Multiple sequence alignment - TraesCS4B01G247000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G247000 chr4B 100.000 8690 0 0 1 8690 511169995 511161306 0.000000e+00 16048.0
1 TraesCS4B01G247000 chr4B 95.122 123 4 2 6071 6192 535428149 535428270 8.900000e-45 193.0
2 TraesCS4B01G247000 chr4B 93.548 124 5 3 6071 6192 535299134 535299256 1.930000e-41 182.0
3 TraesCS4B01G247000 chr4B 88.618 123 7 4 7834 7953 510844512 510844630 9.090000e-30 143.0
4 TraesCS4B01G247000 chr4B 91.667 60 4 1 5107 5165 510841389 510841448 2.010000e-11 82.4
5 TraesCS4B01G247000 chr4A 90.290 4717 286 83 287 4921 48521533 48526159 0.000000e+00 6015.0
6 TraesCS4B01G247000 chr4A 90.086 1392 75 30 7213 8551 48528364 48529745 0.000000e+00 1748.0
7 TraesCS4B01G247000 chr4A 89.585 989 52 14 5179 6151 48526695 48527648 0.000000e+00 1208.0
8 TraesCS4B01G247000 chr4A 89.896 386 21 7 6278 6645 48527652 48528037 1.700000e-131 481.0
9 TraesCS4B01G247000 chr4A 95.374 281 10 1 6838 7118 48528085 48528362 2.230000e-120 444.0
10 TraesCS4B01G247000 chr4A 80.042 481 60 20 7470 7938 48891808 48891352 3.030000e-84 324.0
11 TraesCS4B01G247000 chr4A 83.660 306 31 15 5466 5765 48894726 48894434 4.000000e-68 270.0
12 TraesCS4B01G247000 chr4A 96.581 117 3 1 6071 6186 36535280 36535396 8.900000e-45 193.0
13 TraesCS4B01G247000 chr4A 92.661 109 5 2 8583 8690 48529856 48529962 4.200000e-33 154.0
14 TraesCS4B01G247000 chr4A 92.157 102 7 1 7111 7211 712853629 712853528 9.090000e-30 143.0
15 TraesCS4B01G247000 chr4A 93.750 64 4 0 7012 7075 48892099 48892036 7.180000e-16 97.1
16 TraesCS4B01G247000 chr4A 97.872 47 1 0 1424 1470 48522622 48522668 2.010000e-11 82.4
17 TraesCS4B01G247000 chr4A 90.476 63 5 1 5107 5168 48894974 48894912 2.010000e-11 82.4
18 TraesCS4B01G247000 chr4A 95.833 48 1 1 8535 8582 48529777 48529823 9.350000e-10 76.8
19 TraesCS4B01G247000 chr4A 95.349 43 2 0 1370 1412 48522676 48522718 1.570000e-07 69.4
20 TraesCS4B01G247000 chr4D 94.477 3549 155 16 1646 5168 415004170 415000637 0.000000e+00 5430.0
21 TraesCS4B01G247000 chr4D 93.434 1995 46 12 5182 7122 415000656 414998693 0.000000e+00 2880.0
22 TraesCS4B01G247000 chr4D 88.896 1675 93 43 29 1649 415005834 415004199 0.000000e+00 1977.0
23 TraesCS4B01G247000 chr4D 90.022 1373 76 26 7211 8551 414998697 414997354 0.000000e+00 1720.0
24 TraesCS4B01G247000 chr4D 90.826 109 5 3 8583 8690 414997270 414997166 3.270000e-29 141.0
25 TraesCS4B01G247000 chr4D 91.667 60 4 1 5107 5165 414621537 414621596 2.010000e-11 82.4
26 TraesCS4B01G247000 chr4D 97.872 47 1 0 1424 1470 415004472 415004426 2.010000e-11 82.4
27 TraesCS4B01G247000 chr4D 91.489 47 4 0 1370 1416 415004418 415004372 2.020000e-06 65.8
28 TraesCS4B01G247000 chr3B 79.679 374 50 11 6724 7072 817523819 817524191 6.740000e-61 246.0
29 TraesCS4B01G247000 chr3B 83.562 219 28 2 5230 5448 64300315 64300105 1.910000e-46 198.0
30 TraesCS4B01G247000 chr3B 73.239 781 103 59 465 1212 817517158 817517865 4.140000e-43 187.0
31 TraesCS4B01G247000 chr3B 92.105 114 7 2 6183 6296 450843907 450844018 9.030000e-35 159.0
32 TraesCS4B01G247000 chr3B 100.000 31 0 0 6122 6152 810565539 810565509 3.390000e-04 58.4
33 TraesCS4B01G247000 chr3A 78.307 378 54 16 6724 7075 740192224 740191849 1.470000e-52 219.0
34 TraesCS4B01G247000 chr3A 93.860 114 5 2 6183 6296 470095675 470095786 4.170000e-38 171.0
35 TraesCS4B01G247000 chr3A 88.793 116 11 2 7091 7205 726326316 726326430 3.270000e-29 141.0
36 TraesCS4B01G247000 chr3A 79.381 194 27 8 5454 5639 740192409 740192221 3.290000e-24 124.0
37 TraesCS4B01G247000 chr5D 94.444 108 6 0 6180 6287 139441023 139440916 5.400000e-37 167.0
38 TraesCS4B01G247000 chr7B 94.444 108 5 1 6191 6297 162120908 162120801 1.940000e-36 165.0
39 TraesCS4B01G247000 chr7B 97.701 87 2 0 7120 7206 446149487 446149573 5.430000e-32 150.0
40 TraesCS4B01G247000 chr5B 96.000 100 4 0 6188 6287 166379083 166379182 6.980000e-36 163.0
41 TraesCS4B01G247000 chr5A 94.231 104 6 0 6180 6283 174594014 174594117 9.030000e-35 159.0
42 TraesCS4B01G247000 chr3D 89.431 123 11 2 6176 6297 80943309 80943188 4.200000e-33 154.0
43 TraesCS4B01G247000 chr3D 91.346 104 9 0 7120 7223 386613364 386613261 9.090000e-30 143.0
44 TraesCS4B01G247000 chr3D 90.909 55 3 2 6099 6152 332801467 332801414 1.210000e-08 73.1
45 TraesCS4B01G247000 chr1D 93.269 104 7 0 6184 6287 226457723 226457620 4.200000e-33 154.0
46 TraesCS4B01G247000 chr7D 97.701 87 2 0 7120 7206 204732370 204732456 5.430000e-32 150.0
47 TraesCS4B01G247000 chr2B 95.745 94 3 1 7113 7205 365069292 365069385 5.430000e-32 150.0
48 TraesCS4B01G247000 chr2B 95.455 88 4 0 7118 7205 53971060 53970973 3.270000e-29 141.0
49 TraesCS4B01G247000 chr1A 94.845 97 3 1 7121 7215 236401295 236401199 5.430000e-32 150.0
50 TraesCS4B01G247000 chr1A 96.875 32 1 0 6118 6149 32107518 32107487 4.000000e-03 54.7
51 TraesCS4B01G247000 chr7A 87.931 116 11 3 7120 7234 555465426 555465313 5.470000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G247000 chr4B 511161306 511169995 8689 True 16048.000000 16048 100.000000 1 8690 1 chr4B.!!$R1 8689
1 TraesCS4B01G247000 chr4A 48521533 48529962 8429 False 1142.066667 6015 92.994000 287 8690 9 chr4A.!!$F2 8403
2 TraesCS4B01G247000 chr4D 414997166 415005834 8668 True 1756.600000 5430 92.430857 29 8690 7 chr4D.!!$R1 8661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.036952 AGCCATCTCTCCAACACGTG 60.037 55.0 15.48 15.48 0.00 4.49 F
385 397 0.169230 CTCGGTCGAGACAAGTCAGG 59.831 60.0 14.45 0.00 44.53 3.86 F
1479 1555 0.032540 ACGGCGAAGGTACGTCTTTT 59.967 50.0 16.62 0.00 35.77 2.27 F
2726 2860 0.394192 TCCACACACCAGAAGAGCAG 59.606 55.0 0.00 0.00 0.00 4.24 F
3280 3417 0.096976 GATGTGGTGCACGATTTCGG 59.903 55.0 11.45 0.00 44.95 4.30 F
3902 4040 0.037160 ACGGTTCCGGTGCCTTATTT 59.963 50.0 15.66 0.00 0.00 1.40 F
5160 5633 0.179062 GTCCGAGCAATGCTGGAGAT 60.179 55.0 18.77 0.00 39.88 2.75 F
5589 6062 0.178961 GCAAACAACCCTCCCCTTCT 60.179 55.0 0.00 0.00 0.00 2.85 F
7286 7832 0.827368 GGAACTCCTGGCACTCTAGG 59.173 60.0 0.00 0.00 35.34 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1093 1155 2.065906 CTAAGCTCGACCTCCTCGGC 62.066 65.000 0.00 0.00 43.16 5.54 R
2290 2423 0.321298 AGACGGTGTCAATTTCCCCG 60.321 55.000 0.00 0.00 44.06 5.73 R
2803 2937 0.039798 GACGACAGTGCCGTGTAGAA 60.040 55.000 9.89 0.00 40.67 2.10 R
3702 3840 1.000233 GGATGGCCAATGGTGTCCA 60.000 57.895 10.96 7.12 38.19 4.02 R
4994 5401 0.456221 CAGAACTATGAGGCCGACGT 59.544 55.000 0.00 0.00 0.00 4.34 R
5586 6059 0.326618 GGGGATCTGGTCTGGGAGAA 60.327 60.000 0.00 0.00 0.00 2.87 R
6781 7308 0.673644 ACACACGGAGGTAAGCATGC 60.674 55.000 10.51 10.51 0.00 4.06 R
7400 7946 0.343372 ACCATCCTTCTGCTCCCCTA 59.657 55.000 0.00 0.00 0.00 3.53 R
8514 9124 0.247736 AAGGTAGTCTCAGCCTTGCG 59.752 55.000 0.00 0.00 40.71 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.736670 ACTCAAAACTGGAGTTGGCT 57.263 45.000 0.00 0.00 42.77 4.75
21 22 2.301346 ACTCAAAACTGGAGTTGGCTG 58.699 47.619 0.00 0.00 42.77 4.85
22 23 1.610522 CTCAAAACTGGAGTTGGCTGG 59.389 52.381 0.00 0.00 38.44 4.85
23 24 1.064017 TCAAAACTGGAGTTGGCTGGT 60.064 47.619 0.00 0.00 38.44 4.00
24 25 2.173782 TCAAAACTGGAGTTGGCTGGTA 59.826 45.455 0.00 0.00 38.44 3.25
25 26 2.955660 CAAAACTGGAGTTGGCTGGTAA 59.044 45.455 0.00 0.00 38.44 2.85
26 27 3.306472 AAACTGGAGTTGGCTGGTAAA 57.694 42.857 0.00 0.00 38.44 2.01
27 28 3.306472 AACTGGAGTTGGCTGGTAAAA 57.694 42.857 0.00 0.00 36.80 1.52
28 29 2.863809 ACTGGAGTTGGCTGGTAAAAG 58.136 47.619 0.00 0.00 0.00 2.27
29 30 2.174854 ACTGGAGTTGGCTGGTAAAAGT 59.825 45.455 0.00 0.00 0.00 2.66
30 31 3.393278 ACTGGAGTTGGCTGGTAAAAGTA 59.607 43.478 0.00 0.00 0.00 2.24
31 32 4.141344 ACTGGAGTTGGCTGGTAAAAGTAA 60.141 41.667 0.00 0.00 0.00 2.24
32 33 4.794334 TGGAGTTGGCTGGTAAAAGTAAA 58.206 39.130 0.00 0.00 0.00 2.01
33 34 5.202004 TGGAGTTGGCTGGTAAAAGTAAAA 58.798 37.500 0.00 0.00 0.00 1.52
34 35 5.068067 TGGAGTTGGCTGGTAAAAGTAAAAC 59.932 40.000 0.00 0.00 0.00 2.43
35 36 5.177725 AGTTGGCTGGTAAAAGTAAAACG 57.822 39.130 0.00 0.00 0.00 3.60
36 37 4.641541 AGTTGGCTGGTAAAAGTAAAACGT 59.358 37.500 0.00 0.00 0.00 3.99
37 38 4.816786 TGGCTGGTAAAAGTAAAACGTC 57.183 40.909 0.00 0.00 0.00 4.34
38 39 3.565063 TGGCTGGTAAAAGTAAAACGTCC 59.435 43.478 0.00 0.00 0.00 4.79
42 43 5.049267 GCTGGTAAAAGTAAAACGTCCATCA 60.049 40.000 0.00 0.00 0.00 3.07
56 57 4.516698 ACGTCCATCATAATCAAAGCCATC 59.483 41.667 0.00 0.00 0.00 3.51
58 59 5.106791 CGTCCATCATAATCAAAGCCATCTC 60.107 44.000 0.00 0.00 0.00 2.75
69 70 0.036952 AGCCATCTCTCCAACACGTG 60.037 55.000 15.48 15.48 0.00 4.49
99 104 2.399856 TTGTTCGACAAGTGGGTGC 58.600 52.632 0.00 0.00 32.34 5.01
108 113 1.100510 CAAGTGGGTGCAGATCCATG 58.899 55.000 6.64 0.00 33.75 3.66
114 119 1.141657 GGGTGCAGATCCATGCTCTAA 59.858 52.381 8.27 0.00 46.63 2.10
115 120 2.492012 GGTGCAGATCCATGCTCTAAG 58.508 52.381 8.27 0.00 46.63 2.18
116 121 2.158842 GGTGCAGATCCATGCTCTAAGT 60.159 50.000 8.27 0.00 46.63 2.24
117 122 3.070159 GGTGCAGATCCATGCTCTAAGTA 59.930 47.826 8.27 0.00 46.63 2.24
141 146 5.041940 CCTGCCGTGTAGTAGAATAGTTTC 58.958 45.833 0.00 0.00 0.00 2.78
143 148 6.276832 TGCCGTGTAGTAGAATAGTTTCTT 57.723 37.500 0.00 0.00 42.29 2.52
144 149 7.395190 TGCCGTGTAGTAGAATAGTTTCTTA 57.605 36.000 0.00 0.00 42.29 2.10
145 150 8.004087 TGCCGTGTAGTAGAATAGTTTCTTAT 57.996 34.615 0.00 0.00 42.29 1.73
147 152 7.594386 GCCGTGTAGTAGAATAGTTTCTTATCC 59.406 40.741 0.00 0.00 42.29 2.59
148 153 8.081025 CCGTGTAGTAGAATAGTTTCTTATCCC 58.919 40.741 0.00 0.00 42.29 3.85
149 154 7.802251 CGTGTAGTAGAATAGTTTCTTATCCCG 59.198 40.741 0.00 0.00 42.29 5.14
150 155 8.844244 GTGTAGTAGAATAGTTTCTTATCCCGA 58.156 37.037 0.00 0.00 42.29 5.14
151 156 9.412460 TGTAGTAGAATAGTTTCTTATCCCGAA 57.588 33.333 0.00 0.00 42.29 4.30
152 157 9.896263 GTAGTAGAATAGTTTCTTATCCCGAAG 57.104 37.037 0.00 0.00 42.29 3.79
153 158 8.536340 AGTAGAATAGTTTCTTATCCCGAAGT 57.464 34.615 0.00 0.00 42.29 3.01
154 159 8.979534 AGTAGAATAGTTTCTTATCCCGAAGTT 58.020 33.333 0.00 0.00 42.29 2.66
155 160 9.597170 GTAGAATAGTTTCTTATCCCGAAGTTT 57.403 33.333 0.00 0.00 42.29 2.66
157 162 8.947115 AGAATAGTTTCTTATCCCGAAGTTTTG 58.053 33.333 0.00 0.00 39.18 2.44
171 178 8.149647 TCCCGAAGTTTTGTGTTATTCTACTTA 58.850 33.333 0.00 0.00 0.00 2.24
191 198 9.274065 CTACTTAAAAGCATTAAAAAGTAGCCG 57.726 33.333 13.76 0.00 39.38 5.52
201 208 4.379339 AAAAAGTAGCCGAAAACAAGCA 57.621 36.364 0.00 0.00 0.00 3.91
203 210 3.559238 AAGTAGCCGAAAACAAGCATG 57.441 42.857 0.00 0.00 0.00 4.06
217 224 2.549754 CAAGCATGAGACAGAAAACGGT 59.450 45.455 0.00 0.00 0.00 4.83
222 229 1.289800 GAGACAGAAAACGGTCGCCC 61.290 60.000 0.00 0.00 39.01 6.13
237 244 2.691571 GCCCTTTAAGCGGCTAGAC 58.308 57.895 1.35 0.00 42.21 2.59
243 250 4.021016 CCCTTTAAGCGGCTAGACAGATAT 60.021 45.833 1.35 0.00 0.00 1.63
245 252 6.326375 CCTTTAAGCGGCTAGACAGATATAG 58.674 44.000 1.35 0.00 0.00 1.31
247 254 7.147983 CCTTTAAGCGGCTAGACAGATATAGAT 60.148 40.741 1.35 0.00 0.00 1.98
295 307 0.733729 AGATAGACTGACACGGCGAC 59.266 55.000 16.62 5.15 0.00 5.19
321 333 1.080974 GTCATCGTCCGTTGGTCGT 60.081 57.895 2.68 0.00 35.87 4.34
377 389 3.878519 CCTCCGCTCGGTCGAGAC 61.879 72.222 22.51 12.97 44.53 3.36
378 390 3.125573 CTCCGCTCGGTCGAGACA 61.126 66.667 22.51 5.57 44.53 3.41
379 391 2.670592 TCCGCTCGGTCGAGACAA 60.671 61.111 22.51 5.00 44.53 3.18
380 392 2.202492 CCGCTCGGTCGAGACAAG 60.202 66.667 22.51 10.47 44.53 3.16
381 393 2.561885 CGCTCGGTCGAGACAAGT 59.438 61.111 22.51 0.00 44.53 3.16
382 394 1.512310 CGCTCGGTCGAGACAAGTC 60.512 63.158 22.51 4.31 44.53 3.01
383 395 1.579932 GCTCGGTCGAGACAAGTCA 59.420 57.895 22.51 0.00 44.53 3.41
384 396 0.455295 GCTCGGTCGAGACAAGTCAG 60.455 60.000 22.51 0.00 44.53 3.51
385 397 0.169230 CTCGGTCGAGACAAGTCAGG 59.831 60.000 14.45 0.00 44.53 3.86
386 398 1.213013 CGGTCGAGACAAGTCAGGG 59.787 63.158 5.55 0.00 0.00 4.45
387 399 1.241990 CGGTCGAGACAAGTCAGGGA 61.242 60.000 5.55 0.00 0.00 4.20
388 400 0.528470 GGTCGAGACAAGTCAGGGAG 59.472 60.000 5.55 0.00 0.00 4.30
389 401 0.528470 GTCGAGACAAGTCAGGGAGG 59.472 60.000 2.72 0.00 0.00 4.30
565 588 2.927856 ACATGTGTCCTGCCGGGA 60.928 61.111 2.18 0.00 42.77 5.14
604 627 1.079405 TCCGCGCTTCCCAAACTAG 60.079 57.895 5.56 0.00 0.00 2.57
620 643 2.706952 CTAGCCCTCCCCCTCTCTCG 62.707 70.000 0.00 0.00 0.00 4.04
687 711 4.149046 GCAAATTATTTTTGTTGCGACGGA 59.851 37.500 0.00 0.00 37.25 4.69
761 788 1.878522 GCACATCACCGGCTCTACG 60.879 63.158 0.00 0.00 0.00 3.51
785 812 3.319198 GCGTCCACCTCCCTCCAA 61.319 66.667 0.00 0.00 0.00 3.53
797 824 2.768492 CCTCCAAGGCTGCGCAATC 61.768 63.158 13.05 6.54 0.00 2.67
811 838 2.585247 AATCCTCGTAAGCCGCGC 60.585 61.111 0.00 0.00 36.19 6.86
815 842 4.796231 CTCGTAAGCCGCGCCAGT 62.796 66.667 0.00 0.00 36.19 4.00
828 876 1.112315 CGCCAGTCTCCTCCTATGCT 61.112 60.000 0.00 0.00 0.00 3.79
829 877 1.127343 GCCAGTCTCCTCCTATGCTT 58.873 55.000 0.00 0.00 0.00 3.91
1287 1349 4.084888 GGGAACAACGCCGCTTCG 62.085 66.667 0.00 0.00 0.00 3.79
1406 1474 4.436998 GTCCACAGGCTCGTCGGG 62.437 72.222 0.00 0.00 0.00 5.14
1479 1555 0.032540 ACGGCGAAGGTACGTCTTTT 59.967 50.000 16.62 0.00 35.77 2.27
1484 1560 3.249320 GGCGAAGGTACGTCTTTTTCTTT 59.751 43.478 0.00 0.00 33.85 2.52
1485 1561 4.260907 GGCGAAGGTACGTCTTTTTCTTTT 60.261 41.667 0.00 0.00 33.85 2.27
1486 1562 4.902448 GCGAAGGTACGTCTTTTTCTTTTC 59.098 41.667 0.00 0.00 33.85 2.29
1487 1563 5.277202 GCGAAGGTACGTCTTTTTCTTTTCT 60.277 40.000 0.00 0.00 33.85 2.52
1488 1564 6.127403 CGAAGGTACGTCTTTTTCTTTTCTG 58.873 40.000 0.00 0.00 33.85 3.02
1489 1565 6.238022 CGAAGGTACGTCTTTTTCTTTTCTGT 60.238 38.462 0.00 0.00 33.85 3.41
1490 1566 6.600246 AGGTACGTCTTTTTCTTTTCTGTC 57.400 37.500 0.00 0.00 0.00 3.51
1491 1567 6.346896 AGGTACGTCTTTTTCTTTTCTGTCT 58.653 36.000 0.00 0.00 0.00 3.41
1492 1568 6.822170 AGGTACGTCTTTTTCTTTTCTGTCTT 59.178 34.615 0.00 0.00 0.00 3.01
1514 1590 7.543172 GTCTTATGTTTCAATGTGACGGTACTA 59.457 37.037 0.00 0.00 0.00 1.82
1661 1779 8.373220 ACTGGTAATATATTGTGTTAGGTAGGC 58.627 37.037 8.28 0.00 0.00 3.93
1670 1788 6.368779 TTGTGTTAGGTAGGCTTAACAGAT 57.631 37.500 9.85 0.00 44.26 2.90
1731 1849 8.923270 AGTTTCATTGTTCCCAAGAAAAATCTA 58.077 29.630 0.00 0.00 37.76 1.98
1780 1899 5.067805 GCACATTAGGAAAGTGGAATTAGGG 59.932 44.000 0.00 0.00 33.98 3.53
1781 1900 6.423182 CACATTAGGAAAGTGGAATTAGGGA 58.577 40.000 0.00 0.00 0.00 4.20
1829 1948 5.581085 GCCAGTGAATAAAGTACACCAGTAG 59.419 44.000 0.00 0.00 35.47 2.57
1874 1994 5.221224 CCTGTTTCTCTCTGGAGTATAGCTG 60.221 48.000 0.00 0.00 40.29 4.24
1899 2019 2.103094 CGCTGGATCTTAGGTGGATTCA 59.897 50.000 0.00 0.00 0.00 2.57
2043 2173 3.197983 GTGTGCCAGGGTCTATTAGAACT 59.802 47.826 8.59 1.64 31.11 3.01
2048 2179 3.070302 CCAGGGTCTATTAGAACTCTGCC 59.930 52.174 16.01 5.05 32.45 4.85
2064 2195 3.346315 TCTGCCATGATTTGTGTACCAG 58.654 45.455 0.00 0.00 0.00 4.00
2066 2197 2.819019 TGCCATGATTTGTGTACCAGTG 59.181 45.455 0.00 0.00 0.00 3.66
2093 2224 5.532779 GGAAGATGGGAAAGCAAGGTATAAG 59.467 44.000 0.00 0.00 0.00 1.73
2274 2407 6.923508 CAGGACCATCCTTAAAGAAACAAAAC 59.076 38.462 0.00 0.00 46.91 2.43
2275 2408 6.041637 AGGACCATCCTTAAAGAAACAAAACC 59.958 38.462 0.00 0.00 46.91 3.27
2290 2423 2.215942 AAACCTTACACATGGCTCCC 57.784 50.000 0.00 0.00 0.00 4.30
2363 2496 3.366679 GCAATGCTTCATACTGCACTTGT 60.367 43.478 0.00 0.00 42.26 3.16
2419 2552 1.003118 TGATGTAGCGGCCAAGAAGTT 59.997 47.619 2.24 0.00 0.00 2.66
2430 2563 1.070134 CCAAGAAGTTGTCGGTGGAGA 59.930 52.381 0.00 0.00 38.13 3.71
2482 2615 2.736721 CTCGGAGAATGCAACGAAGAAA 59.263 45.455 0.00 0.00 34.09 2.52
2531 2664 0.739813 CGGGTCTGGCGAAACCTAAG 60.740 60.000 0.00 0.00 40.22 2.18
2670 2803 2.665000 CGCCAGAGGAAGCCTTCA 59.335 61.111 6.80 0.00 31.76 3.02
2726 2860 0.394192 TCCACACACCAGAAGAGCAG 59.606 55.000 0.00 0.00 0.00 4.24
2749 2883 4.399219 CGACTAGACAATCCTCCATCCTA 58.601 47.826 0.00 0.00 0.00 2.94
2755 2889 6.031964 AGACAATCCTCCATCCTACTCTAA 57.968 41.667 0.00 0.00 0.00 2.10
2814 2948 4.708421 ACCTTACTCTTATTCTACACGGCA 59.292 41.667 0.00 0.00 0.00 5.69
2870 3004 3.712733 ACCAAACCCTAAGTACAGTGTCA 59.287 43.478 0.00 0.00 0.00 3.58
2886 3020 1.985159 TGTCATTGGGCAGACTAGGTT 59.015 47.619 0.00 0.00 35.81 3.50
2955 3090 9.482627 TTTGCGAACATTTATTATTCAAAGGTT 57.517 25.926 0.00 0.00 41.15 3.50
3069 3205 0.395312 AAAGTTGGACACCCGTCGAT 59.605 50.000 0.00 0.00 43.61 3.59
3076 3212 1.223187 GACACCCGTCGATGTTTGTT 58.777 50.000 3.52 0.00 31.07 2.83
3078 3214 0.237235 CACCCGTCGATGTTTGTTGG 59.763 55.000 3.52 0.00 0.00 3.77
3153 3289 1.137282 TGTAGTTTGTGACGCCAGTGA 59.863 47.619 0.00 0.00 0.00 3.41
3154 3290 1.792949 GTAGTTTGTGACGCCAGTGAG 59.207 52.381 0.00 0.00 0.00 3.51
3181 3317 7.667043 TTGCTTACCTAGTGTAACATTTCAG 57.333 36.000 1.11 0.00 41.43 3.02
3184 3320 7.097834 GCTTACCTAGTGTAACATTTCAGTCT 58.902 38.462 1.11 0.00 41.43 3.24
3188 3324 8.379457 ACCTAGTGTAACATTTCAGTCTTTTC 57.621 34.615 0.00 0.00 41.43 2.29
3189 3325 7.170998 ACCTAGTGTAACATTTCAGTCTTTTCG 59.829 37.037 0.00 0.00 41.43 3.46
3217 3354 2.613474 GCATCAAAGGCTGCCATTTCAA 60.613 45.455 22.65 8.99 32.15 2.69
3272 3409 3.696051 ACATTTATCTGGATGTGGTGCAC 59.304 43.478 8.80 8.80 35.31 4.57
3280 3417 0.096976 GATGTGGTGCACGATTTCGG 59.903 55.000 11.45 0.00 44.95 4.30
3291 3428 3.766151 CACGATTTCGGCTACTTACTCA 58.234 45.455 4.84 0.00 44.95 3.41
3312 3449 1.526887 GCATGATATTGTCGGACACGG 59.473 52.381 10.97 0.00 41.39 4.94
3319 3456 4.201951 GTCGGACACGGCATCAAT 57.798 55.556 2.62 0.00 45.76 2.57
3326 3463 3.546020 CGGACACGGCATCAATACAAATC 60.546 47.826 0.00 0.00 36.18 2.17
3329 3466 2.611751 CACGGCATCAATACAAATCCGA 59.388 45.455 4.71 0.00 38.79 4.55
3361 3498 2.229792 TGGCAATCGAAGTTCAAAGCT 58.770 42.857 3.32 0.00 0.00 3.74
3702 3840 3.056035 GGTCTATCACCGAGGAACAAGTT 60.056 47.826 0.00 0.00 34.56 2.66
3723 3861 1.680338 GACACCATTGGCCATCCTAC 58.320 55.000 6.09 0.00 0.00 3.18
3741 3879 1.538047 ACTGCGGATGCTTGTCATTT 58.462 45.000 0.00 0.00 43.34 2.32
3761 3899 5.798125 TTTTGGCAAACCTTATGATGACA 57.202 34.783 13.10 0.00 36.63 3.58
3769 3907 6.542852 CAAACCTTATGATGACACTTTACGG 58.457 40.000 0.00 0.00 0.00 4.02
3831 3969 3.650281 TCAATGCTTGCCATTCCTCTA 57.350 42.857 0.00 0.00 42.15 2.43
3902 4040 0.037160 ACGGTTCCGGTGCCTTATTT 59.963 50.000 15.66 0.00 0.00 1.40
3946 4084 5.872617 TGGGAAATAACACTCAAGTATGACG 59.127 40.000 0.00 0.00 0.00 4.35
4047 4185 2.607499 TGACACAAATTTGGGATGCCT 58.393 42.857 26.87 3.62 35.04 4.75
4125 4263 6.831664 AACATTATCAACCATCCTAGTCCT 57.168 37.500 0.00 0.00 0.00 3.85
4316 4454 2.557317 TGTCGAGGAACAAGTTGGAAC 58.443 47.619 7.96 0.00 0.00 3.62
4317 4455 2.169769 TGTCGAGGAACAAGTTGGAACT 59.830 45.455 7.96 1.50 42.04 3.01
4345 4483 1.183549 ATCCTAGTTCCGACGCTTGT 58.816 50.000 0.00 0.00 0.00 3.16
4603 4744 3.587797 ATCGCTTAGGAACAACTCGAA 57.412 42.857 0.00 0.00 0.00 3.71
4609 4750 0.383231 AGGAACAACTCGAACGTCGT 59.617 50.000 0.00 0.00 41.35 4.34
4637 4778 4.642445 TCGTAGTCGATTGCCATTTCTA 57.358 40.909 0.00 0.00 41.35 2.10
4843 4984 5.808042 TCGCTTACGAGTCTAACACTTAT 57.192 39.130 0.00 0.00 45.12 1.73
4946 5353 1.742411 CGGGGTGCAATACTCGACAAT 60.742 52.381 0.68 0.00 0.00 2.71
4994 5401 4.956085 TCGTCAAGGAAGAAGTCAAATGA 58.044 39.130 0.00 0.00 0.00 2.57
5015 5422 0.824759 GTCGGCCTCATAGTTCTGGT 59.175 55.000 0.00 0.00 0.00 4.00
5016 5423 1.112113 TCGGCCTCATAGTTCTGGTC 58.888 55.000 0.00 0.00 0.00 4.02
5025 5433 3.767131 TCATAGTTCTGGTCGACATTCCA 59.233 43.478 18.91 4.99 0.00 3.53
5036 5444 6.174049 TGGTCGACATTCCATTGTACAATTA 58.826 36.000 18.50 7.28 0.00 1.40
5152 5625 0.379669 GCAAGGATGTCCGAGCAATG 59.620 55.000 11.98 0.84 42.08 2.82
5153 5626 0.379669 CAAGGATGTCCGAGCAATGC 59.620 55.000 0.00 0.00 42.08 3.56
5154 5627 0.254178 AAGGATGTCCGAGCAATGCT 59.746 50.000 7.79 7.79 43.88 3.79
5155 5628 0.463295 AGGATGTCCGAGCAATGCTG 60.463 55.000 14.48 5.02 39.88 4.41
5156 5629 1.442526 GGATGTCCGAGCAATGCTGG 61.443 60.000 14.48 12.16 39.88 4.85
5157 5630 0.462581 GATGTCCGAGCAATGCTGGA 60.463 55.000 18.77 18.34 39.88 3.86
5158 5631 0.463295 ATGTCCGAGCAATGCTGGAG 60.463 55.000 18.77 8.83 39.88 3.86
5159 5632 1.219124 GTCCGAGCAATGCTGGAGA 59.781 57.895 18.77 10.95 39.88 3.71
5160 5633 0.179062 GTCCGAGCAATGCTGGAGAT 60.179 55.000 18.77 0.00 39.88 2.75
5161 5634 0.543277 TCCGAGCAATGCTGGAGATT 59.457 50.000 18.77 0.00 39.88 2.40
5162 5635 1.065199 TCCGAGCAATGCTGGAGATTT 60.065 47.619 18.77 0.00 39.88 2.17
5163 5636 1.747355 CCGAGCAATGCTGGAGATTTT 59.253 47.619 18.77 0.00 39.88 1.82
5164 5637 2.165030 CCGAGCAATGCTGGAGATTTTT 59.835 45.455 18.77 0.00 39.88 1.94
5227 5700 7.267128 CACGGTAGTACCTTGATTATTTGGTA 58.733 38.462 18.73 0.00 39.65 3.25
5264 5737 3.889196 TCAAGCATGTTTTACGGTGTC 57.111 42.857 0.00 0.00 0.00 3.67
5448 5921 3.244078 TGTCCGAGCAACACTAGAAATGT 60.244 43.478 0.00 0.00 0.00 2.71
5452 5925 3.123621 CGAGCAACACTAGAAATGTCCAC 59.876 47.826 0.00 0.00 0.00 4.02
5537 6010 1.276138 TCGGCAAGAGACATCACACAT 59.724 47.619 0.00 0.00 0.00 3.21
5538 6011 2.079158 CGGCAAGAGACATCACACATT 58.921 47.619 0.00 0.00 0.00 2.71
5539 6012 2.094894 CGGCAAGAGACATCACACATTC 59.905 50.000 0.00 0.00 0.00 2.67
5540 6013 3.076621 GGCAAGAGACATCACACATTCA 58.923 45.455 0.00 0.00 0.00 2.57
5541 6014 3.120060 GGCAAGAGACATCACACATTCAC 60.120 47.826 0.00 0.00 0.00 3.18
5542 6015 3.499537 GCAAGAGACATCACACATTCACA 59.500 43.478 0.00 0.00 0.00 3.58
5543 6016 4.612259 GCAAGAGACATCACACATTCACAC 60.612 45.833 0.00 0.00 0.00 3.82
5584 6057 4.286447 TTGGCAAACAACCCTCCC 57.714 55.556 0.00 0.00 33.18 4.30
5586 6059 1.955458 TTGGCAAACAACCCTCCCCT 61.955 55.000 0.00 0.00 33.18 4.79
5588 6061 1.185618 GGCAAACAACCCTCCCCTTC 61.186 60.000 0.00 0.00 0.00 3.46
5589 6062 0.178961 GCAAACAACCCTCCCCTTCT 60.179 55.000 0.00 0.00 0.00 2.85
5590 6063 1.911057 CAAACAACCCTCCCCTTCTC 58.089 55.000 0.00 0.00 0.00 2.87
5593 6066 1.541368 CAACCCTCCCCTTCTCCCA 60.541 63.158 0.00 0.00 0.00 4.37
5634 6108 3.574354 TGCTTCCATATGGTGCACATA 57.426 42.857 28.20 14.30 45.60 2.29
5657 6131 3.044894 TCCCCTTTGTTTCATTGCCTTT 58.955 40.909 0.00 0.00 0.00 3.11
5688 6162 4.022068 ACGTCTGCATGATTCATTTTTGGT 60.022 37.500 0.00 0.00 0.00 3.67
5789 6270 4.443063 GCCGAACATGTGGTTAAAAAGTTC 59.557 41.667 0.00 0.00 40.63 3.01
5821 6302 1.756538 ACAGGGCAAGTTTTGAACCAG 59.243 47.619 0.00 0.00 33.35 4.00
5970 6458 4.893424 TGTTCCTTACTTGTTGAAGCAC 57.107 40.909 0.00 0.00 31.68 4.40
6169 6657 4.879295 ATGGATCCAGTTTAACCCATCA 57.121 40.909 21.33 0.00 29.11 3.07
6170 6658 4.879295 TGGATCCAGTTTAACCCATCAT 57.121 40.909 11.44 0.00 0.00 2.45
6171 6659 4.792068 TGGATCCAGTTTAACCCATCATC 58.208 43.478 11.44 0.00 0.00 2.92
6274 6763 3.915437 AACTGCGACACTTATTTTGGG 57.085 42.857 0.00 0.00 0.00 4.12
6351 6858 1.561643 TCTTCTGCAGGAATCCTCGT 58.438 50.000 15.13 0.00 33.01 4.18
6385 6892 2.202987 CCTGCTGGCATCGAGGAC 60.203 66.667 0.00 0.00 0.00 3.85
6735 7262 5.759506 ACATAACAAATTCCGTGTCACAA 57.240 34.783 3.42 0.00 0.00 3.33
6736 7263 6.325919 ACATAACAAATTCCGTGTCACAAT 57.674 33.333 3.42 0.00 0.00 2.71
6742 7269 1.300481 TTCCGTGTCACAATTCGCAA 58.700 45.000 3.42 0.00 0.00 4.85
6752 7279 2.162208 CACAATTCGCAAGCATGGTACT 59.838 45.455 0.00 0.00 37.18 2.73
6781 7308 4.242475 TGACAATGCTACGTTCCTACTTG 58.758 43.478 0.00 0.00 0.00 3.16
6906 7450 4.282195 CCCACCAAATTAAGTTGTGGCTTA 59.718 41.667 21.52 0.00 34.27 3.09
7097 7643 7.536159 AGTAGTAACTAGTAGCAGTTGGTTT 57.464 36.000 0.00 0.00 39.12 3.27
7118 7664 8.929487 TGGTTTTTATTTCAATGTTCCTACCTT 58.071 29.630 0.00 0.00 0.00 3.50
7119 7665 9.203421 GGTTTTTATTTCAATGTTCCTACCTTG 57.797 33.333 0.00 0.00 32.94 3.61
7120 7666 9.758651 GTTTTTATTTCAATGTTCCTACCTTGT 57.241 29.630 0.00 0.00 33.30 3.16
7123 7669 9.802039 TTTATTTCAATGTTCCTACCTTGTACT 57.198 29.630 0.00 0.00 33.30 2.73
7124 7670 7.923414 ATTTCAATGTTCCTACCTTGTACTC 57.077 36.000 0.00 0.00 33.30 2.59
7125 7671 5.416271 TCAATGTTCCTACCTTGTACTCC 57.584 43.478 0.00 0.00 33.30 3.85
7126 7672 4.224370 TCAATGTTCCTACCTTGTACTCCC 59.776 45.833 0.00 0.00 33.30 4.30
7127 7673 3.555117 TGTTCCTACCTTGTACTCCCT 57.445 47.619 0.00 0.00 0.00 4.20
7128 7674 3.438183 TGTTCCTACCTTGTACTCCCTC 58.562 50.000 0.00 0.00 0.00 4.30
7129 7675 3.077088 TGTTCCTACCTTGTACTCCCTCT 59.923 47.826 0.00 0.00 0.00 3.69
7130 7676 3.383698 TCCTACCTTGTACTCCCTCTG 57.616 52.381 0.00 0.00 0.00 3.35
7131 7677 2.653366 TCCTACCTTGTACTCCCTCTGT 59.347 50.000 0.00 0.00 0.00 3.41
7132 7678 3.854389 TCCTACCTTGTACTCCCTCTGTA 59.146 47.826 0.00 0.00 0.00 2.74
7133 7679 4.293102 TCCTACCTTGTACTCCCTCTGTAA 59.707 45.833 0.00 0.00 0.00 2.41
7134 7680 5.021458 CCTACCTTGTACTCCCTCTGTAAA 58.979 45.833 0.00 0.00 0.00 2.01
7135 7681 5.661759 CCTACCTTGTACTCCCTCTGTAAAT 59.338 44.000 0.00 0.00 0.00 1.40
7136 7682 6.156429 CCTACCTTGTACTCCCTCTGTAAATT 59.844 42.308 0.00 0.00 0.00 1.82
7137 7683 7.343833 CCTACCTTGTACTCCCTCTGTAAATTA 59.656 40.741 0.00 0.00 0.00 1.40
7138 7684 7.563724 ACCTTGTACTCCCTCTGTAAATTAA 57.436 36.000 0.00 0.00 0.00 1.40
7139 7685 8.159229 ACCTTGTACTCCCTCTGTAAATTAAT 57.841 34.615 0.00 0.00 0.00 1.40
7140 7686 9.275572 ACCTTGTACTCCCTCTGTAAATTAATA 57.724 33.333 0.00 0.00 0.00 0.98
7148 7694 9.360093 CTCCCTCTGTAAATTAATATAAGAGCG 57.640 37.037 9.98 4.77 0.00 5.03
7149 7695 8.867097 TCCCTCTGTAAATTAATATAAGAGCGT 58.133 33.333 9.98 0.00 0.00 5.07
7150 7696 9.490379 CCCTCTGTAAATTAATATAAGAGCGTT 57.510 33.333 9.98 0.00 0.00 4.84
7196 7742 9.669353 TCTAAACGCTCTAATATTAGTTTACGG 57.331 33.333 19.58 9.02 34.29 4.02
7197 7743 9.669353 CTAAACGCTCTAATATTAGTTTACGGA 57.331 33.333 19.58 9.69 34.29 4.69
7198 7744 8.571461 AAACGCTCTAATATTAGTTTACGGAG 57.429 34.615 19.58 10.64 31.14 4.63
7199 7745 6.675987 ACGCTCTAATATTAGTTTACGGAGG 58.324 40.000 19.58 7.21 32.61 4.30
7200 7746 6.091437 CGCTCTAATATTAGTTTACGGAGGG 58.909 44.000 19.58 12.99 32.61 4.30
7201 7747 6.072286 CGCTCTAATATTAGTTTACGGAGGGA 60.072 42.308 19.58 0.00 34.63 4.20
7202 7748 7.314393 GCTCTAATATTAGTTTACGGAGGGAG 58.686 42.308 19.58 8.43 32.61 4.30
7203 7749 7.039853 GCTCTAATATTAGTTTACGGAGGGAGT 60.040 40.741 19.58 0.00 32.61 3.85
7204 7750 9.512588 CTCTAATATTAGTTTACGGAGGGAGTA 57.487 37.037 19.58 0.00 32.61 2.59
7207 7753 8.716674 AATATTAGTTTACGGAGGGAGTATCA 57.283 34.615 0.00 0.00 36.25 2.15
7208 7754 6.651975 ATTAGTTTACGGAGGGAGTATCAG 57.348 41.667 0.00 0.00 36.25 2.90
7209 7755 4.246712 AGTTTACGGAGGGAGTATCAGA 57.753 45.455 0.00 0.00 36.25 3.27
7210 7756 4.805744 AGTTTACGGAGGGAGTATCAGAT 58.194 43.478 0.00 0.00 36.25 2.90
7235 7781 8.571461 TTCTATCAGATTTGCTTCTGTTGATT 57.429 30.769 10.35 0.00 43.02 2.57
7238 7784 7.934855 ATCAGATTTGCTTCTGTTGATTACT 57.065 32.000 10.35 0.00 43.02 2.24
7286 7832 0.827368 GGAACTCCTGGCACTCTAGG 59.173 60.000 0.00 0.00 35.34 3.02
7322 7868 1.668294 CTGTTCTGCCCTCGTCTGT 59.332 57.895 0.00 0.00 0.00 3.41
7345 7891 4.688419 CAAACAGCAGCGCCGTGG 62.688 66.667 2.29 0.00 0.00 4.94
7422 7968 0.462759 GGGAGCAGAAGGATGGTTCG 60.463 60.000 0.00 0.00 0.00 3.95
7426 7972 1.561542 AGCAGAAGGATGGTTCGGAAT 59.438 47.619 0.00 0.00 0.00 3.01
7452 7998 1.394618 CGGCAAGAGCTACTAGGACT 58.605 55.000 0.00 0.00 41.70 3.85
7623 8169 2.629656 GGAGTTTGTGGCGCATGCT 61.630 57.895 17.13 2.84 42.25 3.79
7665 8211 2.291843 GATGAGGCACATCGTCGTG 58.708 57.895 9.14 3.10 44.46 4.35
7813 8359 8.853345 CATTTTATGTTTTACAGACTGCACATC 58.147 33.333 1.25 0.00 0.00 3.06
7905 8451 7.478322 AGCAAACATATGACAGATTGAACATC 58.522 34.615 10.38 0.00 0.00 3.06
7939 8485 4.074259 TGGTGATCATCACTTGTTTCCTG 58.926 43.478 17.46 0.00 46.19 3.86
7955 8501 5.105554 TGTTTCCTGCTGTTATTGTTGTTGT 60.106 36.000 0.00 0.00 0.00 3.32
7956 8502 5.590530 TTCCTGCTGTTATTGTTGTTGTT 57.409 34.783 0.00 0.00 0.00 2.83
7962 8508 5.928839 TGCTGTTATTGTTGTTGTTGTTGTT 59.071 32.000 0.00 0.00 0.00 2.83
7966 8512 6.088217 TGTTATTGTTGTTGTTGTTGTTGTCG 59.912 34.615 0.00 0.00 0.00 4.35
7975 8521 5.608676 TGTTGTTGTTGTCGTTGTCTTAA 57.391 34.783 0.00 0.00 0.00 1.85
8078 8624 1.069765 CCAGCGACTGGTCAGTTGT 59.930 57.895 16.92 4.58 45.82 3.32
8149 8695 3.055530 CCAGTTTCATGGAGTCAGTAGCT 60.056 47.826 0.00 0.00 43.57 3.32
8158 8704 3.838317 TGGAGTCAGTAGCTAACCATGTT 59.162 43.478 0.00 0.00 0.00 2.71
8265 8832 0.037326 TTAGTGGCTGGCTTCTCACG 60.037 55.000 2.00 0.00 35.50 4.35
8284 8851 1.001641 GCTCCCAGCAACCAGTCAT 60.002 57.895 0.00 0.00 41.89 3.06
8286 8853 1.340017 GCTCCCAGCAACCAGTCATTA 60.340 52.381 0.00 0.00 41.89 1.90
8338 8932 6.875726 CCAGTCTGAAGTGATGAACATCTTAA 59.124 38.462 14.50 0.00 38.60 1.85
8339 8933 7.148507 CCAGTCTGAAGTGATGAACATCTTAAC 60.149 40.741 14.50 6.13 38.60 2.01
8344 8938 4.517285 AGTGATGAACATCTTAACCGCAT 58.483 39.130 14.50 0.00 38.60 4.73
8368 8962 3.942829 TCTGAGTTGGTAGCTTTCCATG 58.057 45.455 10.42 0.00 34.75 3.66
8369 8963 3.012518 CTGAGTTGGTAGCTTTCCATGG 58.987 50.000 4.97 4.97 34.75 3.66
8371 8965 3.073798 TGAGTTGGTAGCTTTCCATGGAA 59.926 43.478 23.63 23.63 34.75 3.53
8390 8987 7.939039 CCATGGAATACATTGTTAGTCTGGTAT 59.061 37.037 5.56 0.00 37.84 2.73
8392 8989 9.998106 ATGGAATACATTGTTAGTCTGGTATAC 57.002 33.333 0.00 0.00 35.97 1.47
8400 8997 9.254133 CATTGTTAGTCTGGTATACATCTTCAG 57.746 37.037 5.01 2.67 0.00 3.02
8420 9017 4.102524 TCAGGGCTTGTTCAGTTTAGAGAA 59.897 41.667 0.00 0.00 0.00 2.87
8424 9021 5.352846 GGGCTTGTTCAGTTTAGAGAAGATC 59.647 44.000 0.00 0.00 0.00 2.75
8429 9026 5.477291 TGTTCAGTTTAGAGAAGATCGAGGT 59.523 40.000 0.00 0.00 0.00 3.85
8430 9027 6.657966 TGTTCAGTTTAGAGAAGATCGAGGTA 59.342 38.462 0.00 0.00 0.00 3.08
8453 9050 6.954487 AGTTAACCCCTACAAAGTCAAAAG 57.046 37.500 0.88 0.00 0.00 2.27
8470 9067 1.773541 AAGATCCTCCCCCAAACCTT 58.226 50.000 0.00 0.00 0.00 3.50
8486 9089 1.118838 CCTTCCCAGCAACCAACAAA 58.881 50.000 0.00 0.00 0.00 2.83
8490 9093 0.539051 CCCAGCAACCAACAAACCAA 59.461 50.000 0.00 0.00 0.00 3.67
8491 9094 1.065854 CCCAGCAACCAACAAACCAAA 60.066 47.619 0.00 0.00 0.00 3.28
8493 9096 2.871633 CCAGCAACCAACAAACCAAATC 59.128 45.455 0.00 0.00 0.00 2.17
8501 9104 3.465871 CAACAAACCAAATCCAACCCAG 58.534 45.455 0.00 0.00 0.00 4.45
8573 9231 6.650120 AGATAGGTGGATTCACAACGTTTAT 58.350 36.000 6.44 0.00 45.32 1.40
8574 9232 7.788026 AGATAGGTGGATTCACAACGTTTATA 58.212 34.615 6.44 0.00 45.32 0.98
8575 9233 7.709613 AGATAGGTGGATTCACAACGTTTATAC 59.290 37.037 6.44 0.00 45.32 1.47
8576 9234 5.553123 AGGTGGATTCACAACGTTTATACA 58.447 37.500 6.44 0.00 45.32 2.29
8578 9236 5.391203 GGTGGATTCACAACGTTTATACACC 60.391 44.000 19.80 19.80 45.32 4.16
8579 9237 5.410439 GTGGATTCACAACGTTTATACACCT 59.590 40.000 0.00 0.00 43.13 4.00
8580 9238 6.591062 GTGGATTCACAACGTTTATACACCTA 59.409 38.462 0.00 0.00 43.13 3.08
8581 9239 7.279313 GTGGATTCACAACGTTTATACACCTAT 59.721 37.037 0.00 0.00 43.13 2.57
8582 9240 8.476447 TGGATTCACAACGTTTATACACCTATA 58.524 33.333 0.00 0.00 0.00 1.31
8583 9241 8.758715 GGATTCACAACGTTTATACACCTATAC 58.241 37.037 0.00 0.00 0.00 1.47
8584 9242 9.304731 GATTCACAACGTTTATACACCTATACA 57.695 33.333 0.00 0.00 0.00 2.29
8585 9243 9.826574 ATTCACAACGTTTATACACCTATACAT 57.173 29.630 0.00 0.00 0.00 2.29
8586 9244 9.656040 TTCACAACGTTTATACACCTATACATT 57.344 29.630 0.00 0.00 0.00 2.71
8587 9245 9.304731 TCACAACGTTTATACACCTATACATTC 57.695 33.333 0.00 0.00 0.00 2.67
8591 9249 7.439381 ACGTTTATACACCTATACATTCCCAG 58.561 38.462 0.00 0.00 0.00 4.45
8592 9250 6.872020 CGTTTATACACCTATACATTCCCAGG 59.128 42.308 0.00 0.00 0.00 4.45
8593 9251 7.256048 CGTTTATACACCTATACATTCCCAGGA 60.256 40.741 0.00 0.00 32.25 3.86
8594 9252 7.549147 TTATACACCTATACATTCCCAGGAC 57.451 40.000 0.00 0.00 32.25 3.85
8598 9285 3.711704 ACCTATACATTCCCAGGACACAG 59.288 47.826 0.00 0.00 32.25 3.66
8648 9338 1.000955 CTAAGCCACGAGGACACTTGT 59.999 52.381 1.86 0.00 42.17 3.16
8656 9346 2.167693 ACGAGGACACTTGTTCAGAACA 59.832 45.455 12.24 12.24 38.17 3.18
8657 9347 3.181465 ACGAGGACACTTGTTCAGAACAT 60.181 43.478 16.89 1.63 41.79 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.301346 CAGCCAACTCCAGTTTTGAGT 58.699 47.619 0.00 0.00 44.75 3.41
2 3 1.610522 CCAGCCAACTCCAGTTTTGAG 59.389 52.381 0.00 0.00 35.83 3.02
3 4 1.064017 ACCAGCCAACTCCAGTTTTGA 60.064 47.619 0.00 0.00 35.83 2.69
4 5 1.402787 ACCAGCCAACTCCAGTTTTG 58.597 50.000 0.00 0.00 35.83 2.44
6 7 3.306472 TTTACCAGCCAACTCCAGTTT 57.694 42.857 0.00 0.00 35.83 2.66
7 8 3.222603 CTTTTACCAGCCAACTCCAGTT 58.777 45.455 0.00 0.00 39.12 3.16
8 9 2.174854 ACTTTTACCAGCCAACTCCAGT 59.825 45.455 0.00 0.00 0.00 4.00
10 11 4.440826 TTACTTTTACCAGCCAACTCCA 57.559 40.909 0.00 0.00 0.00 3.86
11 12 5.526115 GTTTTACTTTTACCAGCCAACTCC 58.474 41.667 0.00 0.00 0.00 3.85
12 13 5.209977 CGTTTTACTTTTACCAGCCAACTC 58.790 41.667 0.00 0.00 0.00 3.01
13 14 4.641541 ACGTTTTACTTTTACCAGCCAACT 59.358 37.500 0.00 0.00 0.00 3.16
14 15 4.923893 ACGTTTTACTTTTACCAGCCAAC 58.076 39.130 0.00 0.00 0.00 3.77
15 16 4.036616 GGACGTTTTACTTTTACCAGCCAA 59.963 41.667 0.00 0.00 0.00 4.52
16 17 3.565063 GGACGTTTTACTTTTACCAGCCA 59.435 43.478 0.00 0.00 0.00 4.75
17 18 3.565063 TGGACGTTTTACTTTTACCAGCC 59.435 43.478 0.00 0.00 0.00 4.85
18 19 4.816786 TGGACGTTTTACTTTTACCAGC 57.183 40.909 0.00 0.00 0.00 4.85
19 20 6.548441 TGATGGACGTTTTACTTTTACCAG 57.452 37.500 0.00 0.00 0.00 4.00
20 21 8.618702 TTATGATGGACGTTTTACTTTTACCA 57.381 30.769 0.00 0.00 0.00 3.25
21 22 9.712359 GATTATGATGGACGTTTTACTTTTACC 57.288 33.333 0.00 0.00 0.00 2.85
25 26 9.840427 CTTTGATTATGATGGACGTTTTACTTT 57.160 29.630 0.00 0.00 0.00 2.66
26 27 7.968405 GCTTTGATTATGATGGACGTTTTACTT 59.032 33.333 0.00 0.00 0.00 2.24
27 28 7.415206 GGCTTTGATTATGATGGACGTTTTACT 60.415 37.037 0.00 0.00 0.00 2.24
28 29 6.691388 GGCTTTGATTATGATGGACGTTTTAC 59.309 38.462 0.00 0.00 0.00 2.01
29 30 6.375736 TGGCTTTGATTATGATGGACGTTTTA 59.624 34.615 0.00 0.00 0.00 1.52
30 31 5.184864 TGGCTTTGATTATGATGGACGTTTT 59.815 36.000 0.00 0.00 0.00 2.43
31 32 4.704540 TGGCTTTGATTATGATGGACGTTT 59.295 37.500 0.00 0.00 0.00 3.60
32 33 4.269183 TGGCTTTGATTATGATGGACGTT 58.731 39.130 0.00 0.00 0.00 3.99
33 34 3.884895 TGGCTTTGATTATGATGGACGT 58.115 40.909 0.00 0.00 0.00 4.34
34 35 4.758674 AGATGGCTTTGATTATGATGGACG 59.241 41.667 0.00 0.00 0.00 4.79
35 36 6.002704 AGAGATGGCTTTGATTATGATGGAC 58.997 40.000 0.00 0.00 0.00 4.02
36 37 6.196918 AGAGATGGCTTTGATTATGATGGA 57.803 37.500 0.00 0.00 0.00 3.41
37 38 5.415077 GGAGAGATGGCTTTGATTATGATGG 59.585 44.000 0.00 0.00 0.00 3.51
38 39 6.002082 TGGAGAGATGGCTTTGATTATGATG 58.998 40.000 0.00 0.00 0.00 3.07
42 43 5.591877 GTGTTGGAGAGATGGCTTTGATTAT 59.408 40.000 0.00 0.00 0.00 1.28
48 49 1.072331 ACGTGTTGGAGAGATGGCTTT 59.928 47.619 0.00 0.00 0.00 3.51
69 70 1.859080 GTCGAACAAGTGTCTGTGTCC 59.141 52.381 0.00 0.00 0.00 4.02
99 104 4.798924 GCAGGTACTTAGAGCATGGATCTG 60.799 50.000 0.00 0.00 34.60 2.90
108 113 0.531200 ACACGGCAGGTACTTAGAGC 59.469 55.000 0.00 0.00 34.60 4.09
114 119 2.795231 TCTACTACACGGCAGGTACT 57.205 50.000 0.00 0.00 43.88 2.73
115 120 4.578105 ACTATTCTACTACACGGCAGGTAC 59.422 45.833 0.00 0.00 0.00 3.34
116 121 4.785301 ACTATTCTACTACACGGCAGGTA 58.215 43.478 0.00 0.00 0.00 3.08
117 122 3.629087 ACTATTCTACTACACGGCAGGT 58.371 45.455 0.00 0.00 0.00 4.00
141 146 8.040716 AGAATAACACAAAACTTCGGGATAAG 57.959 34.615 0.00 0.00 0.00 1.73
143 148 8.316214 AGTAGAATAACACAAAACTTCGGGATA 58.684 33.333 0.00 0.00 0.00 2.59
144 149 7.166167 AGTAGAATAACACAAAACTTCGGGAT 58.834 34.615 0.00 0.00 0.00 3.85
145 150 6.527423 AGTAGAATAACACAAAACTTCGGGA 58.473 36.000 0.00 0.00 0.00 5.14
171 178 7.492994 TGTTTTCGGCTACTTTTTAATGCTTTT 59.507 29.630 0.00 0.00 0.00 2.27
191 198 5.172053 CGTTTTCTGTCTCATGCTTGTTTTC 59.828 40.000 0.00 0.00 0.00 2.29
201 208 1.429463 GCGACCGTTTTCTGTCTCAT 58.571 50.000 0.00 0.00 33.00 2.90
203 210 1.289800 GGGCGACCGTTTTCTGTCTC 61.290 60.000 0.00 0.00 43.64 3.36
222 229 7.147143 TCTATATCTGTCTAGCCGCTTAAAG 57.853 40.000 0.00 0.00 0.00 1.85
269 281 5.811100 CGCCGTGTCAGTCTATCTATATCTA 59.189 44.000 0.00 0.00 0.00 1.98
270 282 4.632251 CGCCGTGTCAGTCTATCTATATCT 59.368 45.833 0.00 0.00 0.00 1.98
271 283 4.630505 TCGCCGTGTCAGTCTATCTATATC 59.369 45.833 0.00 0.00 0.00 1.63
272 284 4.392445 GTCGCCGTGTCAGTCTATCTATAT 59.608 45.833 0.00 0.00 0.00 0.86
273 285 3.744942 GTCGCCGTGTCAGTCTATCTATA 59.255 47.826 0.00 0.00 0.00 1.31
274 286 2.548904 GTCGCCGTGTCAGTCTATCTAT 59.451 50.000 0.00 0.00 0.00 1.98
275 287 1.938577 GTCGCCGTGTCAGTCTATCTA 59.061 52.381 0.00 0.00 0.00 1.98
276 288 0.733729 GTCGCCGTGTCAGTCTATCT 59.266 55.000 0.00 0.00 0.00 1.98
277 289 0.733729 AGTCGCCGTGTCAGTCTATC 59.266 55.000 0.00 0.00 0.00 2.08
278 290 1.135373 CAAGTCGCCGTGTCAGTCTAT 60.135 52.381 0.00 0.00 0.00 1.98
279 291 0.240145 CAAGTCGCCGTGTCAGTCTA 59.760 55.000 0.00 0.00 0.00 2.59
280 292 1.007271 CAAGTCGCCGTGTCAGTCT 60.007 57.895 0.00 0.00 0.00 3.24
281 293 2.658707 GCAAGTCGCCGTGTCAGTC 61.659 63.158 0.00 0.00 32.94 3.51
282 294 2.661866 GCAAGTCGCCGTGTCAGT 60.662 61.111 0.00 0.00 32.94 3.41
283 295 1.959899 GATGCAAGTCGCCGTGTCAG 61.960 60.000 0.00 0.00 41.33 3.51
284 296 2.027073 GATGCAAGTCGCCGTGTCA 61.027 57.895 0.00 0.00 41.33 3.58
285 297 2.778679 GATGCAAGTCGCCGTGTC 59.221 61.111 0.00 0.00 41.33 3.67
295 307 0.802222 ACGGACGATGACGATGCAAG 60.802 55.000 0.00 0.00 42.66 4.01
362 374 2.670592 TTGTCTCGACCGAGCGGA 60.671 61.111 16.83 0.38 41.71 5.54
363 375 2.202492 CTTGTCTCGACCGAGCGG 60.202 66.667 14.00 7.48 41.71 5.52
365 377 0.455295 CTGACTTGTCTCGACCGAGC 60.455 60.000 14.00 9.94 41.71 5.03
366 378 0.169230 CCTGACTTGTCTCGACCGAG 59.831 60.000 12.77 12.77 43.21 4.63
367 379 1.241990 CCCTGACTTGTCTCGACCGA 61.242 60.000 2.35 0.00 0.00 4.69
369 381 0.528470 CTCCCTGACTTGTCTCGACC 59.472 60.000 2.35 0.00 0.00 4.79
371 383 1.251527 GCCTCCCTGACTTGTCTCGA 61.252 60.000 2.35 0.00 0.00 4.04
372 384 1.216710 GCCTCCCTGACTTGTCTCG 59.783 63.158 2.35 0.00 0.00 4.04
373 385 1.216710 CGCCTCCCTGACTTGTCTC 59.783 63.158 2.35 0.00 0.00 3.36
374 386 0.832135 TTCGCCTCCCTGACTTGTCT 60.832 55.000 2.35 0.00 0.00 3.41
375 387 0.034896 TTTCGCCTCCCTGACTTGTC 59.965 55.000 0.00 0.00 0.00 3.18
376 388 0.250338 GTTTCGCCTCCCTGACTTGT 60.250 55.000 0.00 0.00 0.00 3.16
377 389 0.035458 AGTTTCGCCTCCCTGACTTG 59.965 55.000 0.00 0.00 0.00 3.16
378 390 0.035458 CAGTTTCGCCTCCCTGACTT 59.965 55.000 0.00 0.00 0.00 3.01
379 391 0.832135 TCAGTTTCGCCTCCCTGACT 60.832 55.000 0.00 0.00 0.00 3.41
380 392 0.034896 TTCAGTTTCGCCTCCCTGAC 59.965 55.000 0.00 0.00 33.90 3.51
381 393 0.321671 CTTCAGTTTCGCCTCCCTGA 59.678 55.000 0.00 0.00 32.38 3.86
382 394 1.301677 GCTTCAGTTTCGCCTCCCTG 61.302 60.000 0.00 0.00 0.00 4.45
383 395 1.003233 GCTTCAGTTTCGCCTCCCT 60.003 57.895 0.00 0.00 0.00 4.20
384 396 2.391389 CGCTTCAGTTTCGCCTCCC 61.391 63.158 0.00 0.00 0.00 4.30
385 397 3.028366 GCGCTTCAGTTTCGCCTCC 62.028 63.158 0.00 0.00 42.71 4.30
386 398 2.476499 GCGCTTCAGTTTCGCCTC 59.524 61.111 0.00 0.00 42.71 4.70
387 399 3.414700 CGCGCTTCAGTTTCGCCT 61.415 61.111 5.56 0.00 45.34 5.52
388 400 4.445545 CCGCGCTTCAGTTTCGCC 62.446 66.667 5.56 0.00 45.34 5.54
389 401 3.354499 CTCCGCGCTTCAGTTTCGC 62.354 63.158 5.56 0.00 44.76 4.70
620 643 0.039165 CCCTTTTGCTTTCGAGGTGC 60.039 55.000 0.00 0.00 0.00 5.01
658 682 5.116983 CGCAACAAAAATAATTTGCTCGTCT 59.883 36.000 3.88 0.00 41.80 4.18
687 711 0.395173 GAGAGGAGGAAGGAGACGCT 60.395 60.000 0.00 0.00 0.00 5.07
761 788 1.745489 GGAGGTGGACGCCATTGAC 60.745 63.158 4.54 0.00 39.13 3.18
811 838 2.223923 CGAAAGCATAGGAGGAGACTGG 60.224 54.545 0.00 0.00 44.43 4.00
814 841 3.528597 AACGAAAGCATAGGAGGAGAC 57.471 47.619 0.00 0.00 0.00 3.36
815 842 3.769844 AGAAACGAAAGCATAGGAGGAGA 59.230 43.478 0.00 0.00 0.00 3.71
828 876 2.316792 CGAAGCGAGAGAGAAACGAAA 58.683 47.619 0.00 0.00 0.00 3.46
829 877 1.965083 CGAAGCGAGAGAGAAACGAA 58.035 50.000 0.00 0.00 0.00 3.85
954 1016 2.726351 GGACAGAGGAAGCTCCCGG 61.726 68.421 0.00 0.00 37.19 5.73
1093 1155 2.065906 CTAAGCTCGACCTCCTCGGC 62.066 65.000 0.00 0.00 43.16 5.54
1479 1555 9.734620 CACATTGAAACATAAGACAGAAAAGAA 57.265 29.630 0.00 0.00 0.00 2.52
1484 1560 6.073276 CCGTCACATTGAAACATAAGACAGAA 60.073 38.462 0.00 0.00 0.00 3.02
1485 1561 5.408299 CCGTCACATTGAAACATAAGACAGA 59.592 40.000 0.00 0.00 0.00 3.41
1486 1562 5.179368 ACCGTCACATTGAAACATAAGACAG 59.821 40.000 0.00 0.00 0.00 3.51
1487 1563 5.060506 ACCGTCACATTGAAACATAAGACA 58.939 37.500 0.00 0.00 0.00 3.41
1488 1564 5.607119 ACCGTCACATTGAAACATAAGAC 57.393 39.130 0.00 0.00 0.00 3.01
1489 1565 6.460781 AGTACCGTCACATTGAAACATAAGA 58.539 36.000 0.00 0.00 0.00 2.10
1490 1566 6.721571 AGTACCGTCACATTGAAACATAAG 57.278 37.500 0.00 0.00 0.00 1.73
1491 1567 8.780846 ATTAGTACCGTCACATTGAAACATAA 57.219 30.769 0.00 0.00 0.00 1.90
1492 1568 8.780846 AATTAGTACCGTCACATTGAAACATA 57.219 30.769 0.00 0.00 0.00 2.29
1829 1948 3.072211 GGGCGCCTTTTACTCCATATAC 58.928 50.000 28.56 0.00 0.00 1.47
1874 1994 2.427753 CCTAAGATCCAGCGGCCC 59.572 66.667 0.00 0.00 0.00 5.80
1899 2019 2.867109 ACACATCACCTTAGCTTGCT 57.133 45.000 0.00 0.00 0.00 3.91
1999 2129 6.767524 ACAAATAGTTGTGAACAGGACAAA 57.232 33.333 7.92 0.00 46.40 2.83
2043 2173 3.244875 ACTGGTACACAAATCATGGCAGA 60.245 43.478 0.00 0.00 0.00 4.26
2048 2179 5.487433 TCCTACACTGGTACACAAATCATG 58.513 41.667 0.00 0.00 0.00 3.07
2064 2195 3.350219 TGCTTTCCCATCTTCCTACAC 57.650 47.619 0.00 0.00 0.00 2.90
2066 2197 3.282885 CCTTGCTTTCCCATCTTCCTAC 58.717 50.000 0.00 0.00 0.00 3.18
2093 2224 1.672356 CAGCTACCACACACCCTGC 60.672 63.158 0.00 0.00 0.00 4.85
2274 2407 1.153168 CCGGGAGCCATGTGTAAGG 60.153 63.158 0.00 0.00 0.00 2.69
2275 2408 1.153168 CCCGGGAGCCATGTGTAAG 60.153 63.158 18.48 0.00 0.00 2.34
2290 2423 0.321298 AGACGGTGTCAATTTCCCCG 60.321 55.000 0.00 0.00 44.06 5.73
2330 2463 2.422303 AGCATTGCTTATGGCGCAT 58.578 47.368 10.83 3.40 45.43 4.73
2363 2496 1.290955 CAGCGGTGTTTCGGAGGTA 59.709 57.895 6.41 0.00 0.00 3.08
2419 2552 1.546029 CATCTTCTGTCTCCACCGACA 59.454 52.381 0.00 0.00 41.33 4.35
2430 2563 3.713288 TGTTTTCGTCGACATCTTCTGT 58.287 40.909 17.16 0.00 42.15 3.41
2482 2615 1.629043 TCTAGGTTGCTCGTCCAACT 58.371 50.000 16.29 8.46 43.48 3.16
2531 2664 1.887707 CGCCCGGGAACTAATGAGC 60.888 63.158 29.31 2.72 0.00 4.26
2670 2803 1.032014 ATGCTTTGCAGGTTGTCGTT 58.968 45.000 0.00 0.00 43.65 3.85
2707 2841 0.394192 CTGCTCTTCTGGTGTGTGGA 59.606 55.000 0.00 0.00 0.00 4.02
2726 2860 2.288518 GGATGGAGGATTGTCTAGTCGC 60.289 54.545 0.00 0.00 0.00 5.19
2749 2883 1.405661 GCCTTGTTAGCGCCTTAGAGT 60.406 52.381 2.29 0.00 0.00 3.24
2755 2889 3.952628 GACGGCCTTGTTAGCGCCT 62.953 63.158 2.29 0.00 36.28 5.52
2802 2936 0.601558 ACGACAGTGCCGTGTAGAAT 59.398 50.000 2.86 0.00 38.97 2.40
2803 2937 0.039798 GACGACAGTGCCGTGTAGAA 60.040 55.000 9.89 0.00 40.67 2.10
2804 2938 1.577922 GACGACAGTGCCGTGTAGA 59.422 57.895 9.89 0.00 40.67 2.59
2814 2948 2.765250 GATGTGGTGGCGACGACAGT 62.765 60.000 20.15 9.89 43.16 3.55
2870 3004 3.954258 GCATTTAACCTAGTCTGCCCAAT 59.046 43.478 0.00 0.00 0.00 3.16
2955 3090 7.791029 TGAGTAAGGCATAGAAATCATGTACA 58.209 34.615 0.00 0.00 0.00 2.90
3069 3205 2.894126 ACTTGTTCACCACCAACAAACA 59.106 40.909 0.14 0.00 41.92 2.83
3076 3212 1.483004 TCTTCGACTTGTTCACCACCA 59.517 47.619 0.00 0.00 0.00 4.17
3078 3214 2.546778 TGTCTTCGACTTGTTCACCAC 58.453 47.619 0.00 0.00 33.15 4.16
3100 3236 4.379394 CGAGCATCAGAACTAGGATAGAGC 60.379 50.000 0.00 0.00 37.29 4.09
3101 3237 4.379394 GCGAGCATCAGAACTAGGATAGAG 60.379 50.000 0.00 0.00 37.29 2.43
3154 3290 6.812879 AATGTTACACTAGGTAAGCAAACC 57.187 37.500 0.00 0.00 42.44 3.27
3181 3317 2.688507 TGATGCCACTCTCGAAAAGAC 58.311 47.619 1.70 0.00 0.00 3.01
3184 3320 2.813754 CCTTTGATGCCACTCTCGAAAA 59.186 45.455 0.00 0.00 0.00 2.29
3188 3324 0.392193 AGCCTTTGATGCCACTCTCG 60.392 55.000 0.00 0.00 0.00 4.04
3189 3325 1.093159 CAGCCTTTGATGCCACTCTC 58.907 55.000 0.00 0.00 0.00 3.20
3217 3354 6.037940 GTCATCATGTGCTTCACAAGATACAT 59.962 38.462 14.65 5.48 46.41 2.29
3272 3409 2.789893 GCTGAGTAAGTAGCCGAAATCG 59.210 50.000 0.00 0.00 39.44 3.34
3280 3417 6.088749 CGACAATATCATGCTGAGTAAGTAGC 59.911 42.308 0.00 0.00 40.29 3.58
3291 3428 2.473816 CGTGTCCGACAATATCATGCT 58.526 47.619 1.88 0.00 35.63 3.79
3312 3449 2.349817 CCGCTCGGATTTGTATTGATGC 60.350 50.000 1.35 0.00 37.50 3.91
3319 3456 0.753867 TATGGCCGCTCGGATTTGTA 59.246 50.000 13.11 0.00 37.50 2.41
3326 3463 3.343972 CCAAATATGGCCGCTCGG 58.656 61.111 3.56 3.56 40.58 4.63
3348 3485 3.499918 ACCTTGATGAGCTTTGAACTTCG 59.500 43.478 0.00 0.00 0.00 3.79
3361 3498 2.625314 CCTCAGCGATAGACCTTGATGA 59.375 50.000 0.00 0.00 39.76 2.92
3702 3840 1.000233 GGATGGCCAATGGTGTCCA 60.000 57.895 10.96 7.12 38.19 4.02
3723 3861 2.256174 CAAAATGACAAGCATCCGCAG 58.744 47.619 0.00 0.00 42.27 5.18
3741 3879 4.406456 AGTGTCATCATAAGGTTTGCCAA 58.594 39.130 0.00 0.00 37.19 4.52
3761 3899 7.068226 ACGTTACATTAGGTATACCCGTAAAGT 59.932 37.037 22.44 22.44 38.74 2.66
3769 3907 8.958043 CGAGTAAAACGTTACATTAGGTATACC 58.042 37.037 14.54 14.54 41.88 2.73
3902 4040 5.072055 CCCATGTCTAACAATATCATGCCA 58.928 41.667 0.00 0.00 35.85 4.92
4047 4185 2.303022 TCCAACTTTGGTTGCCAAACAA 59.697 40.909 3.23 3.23 46.92 2.83
4125 4263 1.078497 ACGGAAATGGCGAGCATCA 60.078 52.632 0.00 0.00 33.17 3.07
4192 4330 2.483877 CTGATGCTACTTTGCCAAACGA 59.516 45.455 0.00 0.00 0.00 3.85
4316 4454 2.280628 GGAACTAGGATTGCCAACGAG 58.719 52.381 0.00 0.00 36.29 4.18
4317 4455 1.404986 CGGAACTAGGATTGCCAACGA 60.405 52.381 0.00 0.00 36.29 3.85
4413 4554 7.605309 CCAGCTATCATGTGCTTCATAAGATAA 59.395 37.037 7.63 0.00 37.44 1.75
4421 4562 2.236893 TGACCAGCTATCATGTGCTTCA 59.763 45.455 7.63 7.68 37.44 3.02
4603 4744 1.016130 ACTACGATGGTCGACGACGT 61.016 55.000 26.30 26.30 43.74 4.34
4637 4778 3.867493 CACATCAGCGTCACAAGATACAT 59.133 43.478 0.00 0.00 0.00 2.29
4843 4984 5.333581 TCAAGATCCTCTACCAAGTCTTGA 58.666 41.667 14.42 10.54 45.28 3.02
4850 4991 3.387962 AGGCATCAAGATCCTCTACCAA 58.612 45.455 0.00 0.00 0.00 3.67
4946 5353 2.366533 CTCTAGGGTGTGTAGCTTCGA 58.633 52.381 0.00 0.00 0.00 3.71
4977 5384 3.741344 CGACGTCATTTGACTTCTTCCTT 59.259 43.478 17.16 0.00 42.66 3.36
4994 5401 0.456221 CAGAACTATGAGGCCGACGT 59.544 55.000 0.00 0.00 0.00 4.34
5015 5422 6.238621 GGCATAATTGTACAATGGAATGTCGA 60.239 38.462 21.46 0.48 34.75 4.20
5016 5423 5.914635 GGCATAATTGTACAATGGAATGTCG 59.085 40.000 21.46 6.31 34.75 4.35
5025 5433 6.546034 GGTAAGTGAGGGCATAATTGTACAAT 59.454 38.462 15.47 15.47 0.00 2.71
5061 5469 5.483811 TCCAATATTGCGTTTGAGTCAGTA 58.516 37.500 10.11 0.00 0.00 2.74
5177 5650 7.026072 CAACAAACATCTCCAGCATTGTTGC 62.026 44.000 13.96 0.00 45.74 4.17
5178 5651 4.247267 ACAAACATCTCCAGCATTGTTG 57.753 40.909 0.00 0.00 32.90 3.33
5179 5652 4.624015 CAACAAACATCTCCAGCATTGTT 58.376 39.130 0.00 0.00 40.49 2.83
5180 5653 3.553508 GCAACAAACATCTCCAGCATTGT 60.554 43.478 0.00 0.00 32.78 2.71
5181 5654 2.991190 GCAACAAACATCTCCAGCATTG 59.009 45.455 0.00 0.00 0.00 2.82
5182 5655 2.629137 TGCAACAAACATCTCCAGCATT 59.371 40.909 0.00 0.00 0.00 3.56
5183 5656 2.029649 GTGCAACAAACATCTCCAGCAT 60.030 45.455 0.00 0.00 36.32 3.79
5184 5657 1.337703 GTGCAACAAACATCTCCAGCA 59.662 47.619 0.00 0.00 36.32 4.41
5227 5700 3.559069 CTTGATATGGCATCCTTGGTGT 58.441 45.455 1.65 0.00 0.00 4.16
5264 5737 0.457853 TAAGCGAGCACGTAGGCTTG 60.458 55.000 18.79 14.96 45.99 4.01
5448 5921 1.071699 GCTTCCTTGGTGTACAGTGGA 59.928 52.381 0.00 0.00 33.60 4.02
5452 5925 4.192317 GGAATAGCTTCCTTGGTGTACAG 58.808 47.826 0.00 0.00 46.44 2.74
5537 6010 2.296752 CTGGCAACCAATCATGTGTGAA 59.703 45.455 0.00 0.00 38.01 3.18
5538 6011 1.887854 CTGGCAACCAATCATGTGTGA 59.112 47.619 0.00 0.00 39.04 3.58
5539 6012 1.887854 TCTGGCAACCAATCATGTGTG 59.112 47.619 0.00 0.00 30.80 3.82
5540 6013 2.165167 CTCTGGCAACCAATCATGTGT 58.835 47.619 0.00 0.00 30.80 3.72
5541 6014 2.094906 CACTCTGGCAACCAATCATGTG 60.095 50.000 0.00 0.00 30.80 3.21
5542 6015 2.165167 CACTCTGGCAACCAATCATGT 58.835 47.619 0.00 0.00 30.80 3.21
5543 6016 1.135199 GCACTCTGGCAACCAATCATG 60.135 52.381 0.00 0.00 30.80 3.07
5568 6041 1.955458 AAGGGGAGGGTTGTTTGCCA 61.955 55.000 0.00 0.00 0.00 4.92
5584 6057 1.127343 GGATCTGGTCTGGGAGAAGG 58.873 60.000 0.00 0.00 0.00 3.46
5586 6059 0.326618 GGGGATCTGGTCTGGGAGAA 60.327 60.000 0.00 0.00 0.00 2.87
5588 6061 1.768077 GGGGGATCTGGTCTGGGAG 60.768 68.421 0.00 0.00 0.00 4.30
5589 6062 2.372688 GGGGGATCTGGTCTGGGA 59.627 66.667 0.00 0.00 0.00 4.37
5634 6108 3.250617 AGGCAATGAAACAAAGGGGAAT 58.749 40.909 0.00 0.00 0.00 3.01
5688 6162 8.593945 ATCTTGAGGCAAAATGGTTATTTAGA 57.406 30.769 0.00 0.00 35.50 2.10
5789 6270 2.036958 TGCCCTGTATCAATGGAACG 57.963 50.000 0.00 0.00 0.00 3.95
5892 6373 4.411013 ACTAGTAACGGTACTGGAAACCT 58.589 43.478 28.30 4.66 40.38 3.50
5970 6458 2.870435 GCCCCAGTACACTATATTGGCG 60.870 54.545 0.00 0.00 0.00 5.69
6160 6648 9.685276 CTTTATATATGGCAAGATGATGGGTTA 57.315 33.333 0.00 0.00 0.00 2.85
6161 6649 8.172741 ACTTTATATATGGCAAGATGATGGGTT 58.827 33.333 0.00 0.00 0.00 4.11
6162 6650 7.702785 ACTTTATATATGGCAAGATGATGGGT 58.297 34.615 0.00 0.00 0.00 4.51
6163 6651 9.113838 GTACTTTATATATGGCAAGATGATGGG 57.886 37.037 0.00 0.00 0.00 4.00
6164 6652 9.896645 AGTACTTTATATATGGCAAGATGATGG 57.103 33.333 0.00 0.00 0.00 3.51
6170 6658 9.032624 GGGAGTAGTACTTTATATATGGCAAGA 57.967 37.037 0.00 0.00 0.00 3.02
6171 6659 9.036980 AGGGAGTAGTACTTTATATATGGCAAG 57.963 37.037 0.00 0.00 0.00 4.01
6274 6763 5.288015 GCTTAAACTAATACTCCCTCCGAC 58.712 45.833 0.00 0.00 0.00 4.79
6351 6858 1.694150 CAGGGAGTGAACTTGTCCTCA 59.306 52.381 0.00 0.00 0.00 3.86
6385 6892 1.901085 CTTCCTCTTCCTCCACCCG 59.099 63.158 0.00 0.00 0.00 5.28
6716 7243 5.444983 CGAATTGTGACACGGAATTTGTTA 58.555 37.500 0.22 0.00 0.00 2.41
6717 7244 4.286910 CGAATTGTGACACGGAATTTGTT 58.713 39.130 0.22 0.00 0.00 2.83
6718 7245 3.851838 GCGAATTGTGACACGGAATTTGT 60.852 43.478 15.13 0.00 0.00 2.83
6719 7246 2.656422 GCGAATTGTGACACGGAATTTG 59.344 45.455 11.65 11.65 0.00 2.32
6720 7247 2.292016 TGCGAATTGTGACACGGAATTT 59.708 40.909 0.22 0.00 0.00 1.82
6735 7262 3.081061 TGAAAGTACCATGCTTGCGAAT 58.919 40.909 0.00 0.00 0.00 3.34
6736 7263 2.499197 TGAAAGTACCATGCTTGCGAA 58.501 42.857 0.00 0.00 0.00 4.70
6742 7269 4.558226 TGTCAGATGAAAGTACCATGCT 57.442 40.909 0.00 0.00 0.00 3.79
6752 7279 4.391830 GGAACGTAGCATTGTCAGATGAAA 59.608 41.667 0.00 0.00 0.00 2.69
6781 7308 0.673644 ACACACGGAGGTAAGCATGC 60.674 55.000 10.51 10.51 0.00 4.06
6906 7450 1.138568 CCAGAGGGCAGGATGAATCT 58.861 55.000 0.00 0.00 39.69 2.40
7122 7668 9.360093 CGCTCTTATATTAATTTACAGAGGGAG 57.640 37.037 20.74 5.24 40.49 4.30
7123 7669 8.867097 ACGCTCTTATATTAATTTACAGAGGGA 58.133 33.333 25.54 1.67 40.49 4.20
7124 7670 9.490379 AACGCTCTTATATTAATTTACAGAGGG 57.510 33.333 21.96 21.96 42.53 4.30
7170 7716 9.669353 CCGTAAACTAATATTAGAGCGTTTAGA 57.331 33.333 25.83 3.74 34.84 2.10
7171 7717 9.669353 TCCGTAAACTAATATTAGAGCGTTTAG 57.331 33.333 25.83 14.01 34.84 1.85
7172 7718 9.669353 CTCCGTAAACTAATATTAGAGCGTTTA 57.331 33.333 25.83 17.45 34.84 2.01
7173 7719 7.650903 CCTCCGTAAACTAATATTAGAGCGTTT 59.349 37.037 25.83 18.28 34.84 3.60
7174 7720 7.144000 CCTCCGTAAACTAATATTAGAGCGTT 58.856 38.462 25.83 15.99 34.84 4.84
7175 7721 6.294397 CCCTCCGTAAACTAATATTAGAGCGT 60.294 42.308 25.83 11.63 34.84 5.07
7176 7722 6.072286 TCCCTCCGTAAACTAATATTAGAGCG 60.072 42.308 25.83 20.56 34.84 5.03
7177 7723 7.039853 ACTCCCTCCGTAAACTAATATTAGAGC 60.040 40.741 25.83 12.58 34.84 4.09
7178 7724 8.406730 ACTCCCTCCGTAAACTAATATTAGAG 57.593 38.462 25.83 12.47 34.84 2.43
7181 7727 9.812347 TGATACTCCCTCCGTAAACTAATATTA 57.188 33.333 0.00 0.00 0.00 0.98
7182 7728 8.716674 TGATACTCCCTCCGTAAACTAATATT 57.283 34.615 0.00 0.00 0.00 1.28
7183 7729 8.168725 TCTGATACTCCCTCCGTAAACTAATAT 58.831 37.037 0.00 0.00 0.00 1.28
7184 7730 7.520798 TCTGATACTCCCTCCGTAAACTAATA 58.479 38.462 0.00 0.00 0.00 0.98
7185 7731 6.371278 TCTGATACTCCCTCCGTAAACTAAT 58.629 40.000 0.00 0.00 0.00 1.73
7186 7732 5.759059 TCTGATACTCCCTCCGTAAACTAA 58.241 41.667 0.00 0.00 0.00 2.24
7187 7733 5.378230 TCTGATACTCCCTCCGTAAACTA 57.622 43.478 0.00 0.00 0.00 2.24
7188 7734 4.246712 TCTGATACTCCCTCCGTAAACT 57.753 45.455 0.00 0.00 0.00 2.66
7189 7735 5.302313 AGAATCTGATACTCCCTCCGTAAAC 59.698 44.000 0.00 0.00 0.00 2.01
7190 7736 5.455872 AGAATCTGATACTCCCTCCGTAAA 58.544 41.667 0.00 0.00 0.00 2.01
7191 7737 5.063017 AGAATCTGATACTCCCTCCGTAA 57.937 43.478 0.00 0.00 0.00 3.18
7192 7738 4.726035 AGAATCTGATACTCCCTCCGTA 57.274 45.455 0.00 0.00 0.00 4.02
7193 7739 3.603965 AGAATCTGATACTCCCTCCGT 57.396 47.619 0.00 0.00 0.00 4.69
7194 7740 5.257262 TGATAGAATCTGATACTCCCTCCG 58.743 45.833 0.00 0.00 0.00 4.63
7195 7741 6.489603 TCTGATAGAATCTGATACTCCCTCC 58.510 44.000 0.00 0.00 33.13 4.30
7196 7742 8.593945 AATCTGATAGAATCTGATACTCCCTC 57.406 38.462 8.98 0.00 44.11 4.30
7197 7743 8.814931 CAAATCTGATAGAATCTGATACTCCCT 58.185 37.037 8.98 0.00 44.11 4.20
7198 7744 7.548780 GCAAATCTGATAGAATCTGATACTCCC 59.451 40.741 8.98 0.00 44.11 4.30
7199 7745 8.313292 AGCAAATCTGATAGAATCTGATACTCC 58.687 37.037 8.98 1.59 44.11 3.85
7200 7746 9.709495 AAGCAAATCTGATAGAATCTGATACTC 57.291 33.333 8.98 0.00 44.11 2.59
7201 7747 9.709495 GAAGCAAATCTGATAGAATCTGATACT 57.291 33.333 8.98 5.79 44.11 2.12
7202 7748 9.709495 AGAAGCAAATCTGATAGAATCTGATAC 57.291 33.333 8.98 4.14 44.11 2.24
7345 7891 2.430465 TGCTGAAGATGAAGAGGTTGC 58.570 47.619 0.00 0.00 0.00 4.17
7351 7897 2.011947 CGCCAATGCTGAAGATGAAGA 58.988 47.619 0.00 0.00 34.43 2.87
7400 7946 0.343372 ACCATCCTTCTGCTCCCCTA 59.657 55.000 0.00 0.00 0.00 3.53
7411 7957 0.395724 GGCCATTCCGAACCATCCTT 60.396 55.000 0.00 0.00 0.00 3.36
7452 7998 1.517361 CATGTCTGCCACGCTCCTA 59.483 57.895 0.00 0.00 0.00 2.94
7508 8054 2.956964 CGATCCTCTCGCCGTTGC 60.957 66.667 0.00 0.00 41.14 4.17
7905 8451 2.754472 TGATCACCAGAACAACGAGTG 58.246 47.619 0.00 0.00 0.00 3.51
7939 8485 6.128688 ACAACAACAACAACAACAATAACAGC 60.129 34.615 0.00 0.00 0.00 4.40
7955 8501 5.163834 GGTCTTAAGACAACGACAACAACAA 60.164 40.000 31.30 0.00 46.47 2.83
7956 8502 4.330620 GGTCTTAAGACAACGACAACAACA 59.669 41.667 31.30 0.00 46.47 3.33
7962 8508 4.124238 CCTTTGGTCTTAAGACAACGACA 58.876 43.478 31.30 19.26 46.47 4.35
8149 8695 2.344592 AGGGTGTCAGGAACATGGTTA 58.655 47.619 0.00 0.00 40.80 2.85
8158 8704 2.391926 TCAGTTGTAGGGTGTCAGGA 57.608 50.000 0.00 0.00 0.00 3.86
8238 8805 1.484240 AGCCAGCCACTAAGATCAGTC 59.516 52.381 0.00 0.00 0.00 3.51
8265 8832 2.360475 GACTGGTTGCTGGGAGCC 60.360 66.667 0.00 0.00 41.51 4.70
8319 8912 4.391830 GCGGTTAAGATGTTCATCACTTCA 59.608 41.667 14.05 0.00 32.90 3.02
8338 8932 0.687354 ACCAACTCAGAAGATGCGGT 59.313 50.000 0.00 0.00 0.00 5.68
8339 8933 2.544685 CTACCAACTCAGAAGATGCGG 58.455 52.381 0.00 0.00 0.00 5.69
8344 8938 3.646162 TGGAAAGCTACCAACTCAGAAGA 59.354 43.478 9.68 0.00 34.25 2.87
8368 8962 9.998106 ATGTATACCAGACTAACAATGTATTCC 57.002 33.333 0.00 0.00 0.00 3.01
8390 8987 3.327757 ACTGAACAAGCCCTGAAGATGTA 59.672 43.478 0.00 0.00 0.00 2.29
8392 8989 2.787994 ACTGAACAAGCCCTGAAGATG 58.212 47.619 0.00 0.00 0.00 2.90
8400 8997 4.642429 TCTTCTCTAAACTGAACAAGCCC 58.358 43.478 0.00 0.00 0.00 5.19
8429 9026 7.804147 TCTTTTGACTTTGTAGGGGTTAACTA 58.196 34.615 5.42 0.00 0.00 2.24
8430 9027 6.665695 TCTTTTGACTTTGTAGGGGTTAACT 58.334 36.000 5.42 0.00 0.00 2.24
8453 9050 0.259065 GGAAGGTTTGGGGGAGGATC 59.741 60.000 0.00 0.00 0.00 3.36
8470 9067 0.324738 TGGTTTGTTGGTTGCTGGGA 60.325 50.000 0.00 0.00 0.00 4.37
8486 9089 1.341080 CTTGCTGGGTTGGATTTGGT 58.659 50.000 0.00 0.00 0.00 3.67
8490 9093 1.610379 GGGCTTGCTGGGTTGGATT 60.610 57.895 0.00 0.00 0.00 3.01
8491 9094 2.037847 GGGCTTGCTGGGTTGGAT 59.962 61.111 0.00 0.00 0.00 3.41
8493 9096 2.993264 CTGGGCTTGCTGGGTTGG 60.993 66.667 0.00 0.00 0.00 3.77
8514 9124 0.247736 AAGGTAGTCTCAGCCTTGCG 59.752 55.000 0.00 0.00 40.71 4.85
8573 9231 4.652421 GTGTCCTGGGAATGTATAGGTGTA 59.348 45.833 0.00 0.00 0.00 2.90
8574 9232 3.454812 GTGTCCTGGGAATGTATAGGTGT 59.545 47.826 0.00 0.00 0.00 4.16
8575 9233 3.454447 TGTGTCCTGGGAATGTATAGGTG 59.546 47.826 0.00 0.00 0.00 4.00
8576 9234 3.711704 CTGTGTCCTGGGAATGTATAGGT 59.288 47.826 0.00 0.00 0.00 3.08
8578 9236 5.815233 ATCTGTGTCCTGGGAATGTATAG 57.185 43.478 0.00 0.00 0.00 1.31
8579 9237 7.567250 TCTTTATCTGTGTCCTGGGAATGTATA 59.433 37.037 0.00 0.00 0.00 1.47
8580 9238 6.386927 TCTTTATCTGTGTCCTGGGAATGTAT 59.613 38.462 0.00 0.00 0.00 2.29
8581 9239 5.724370 TCTTTATCTGTGTCCTGGGAATGTA 59.276 40.000 0.00 0.00 0.00 2.29
8582 9240 4.536090 TCTTTATCTGTGTCCTGGGAATGT 59.464 41.667 0.00 0.00 0.00 2.71
8583 9241 5.102953 TCTTTATCTGTGTCCTGGGAATG 57.897 43.478 0.00 0.00 0.00 2.67
8584 9242 5.779241 TTCTTTATCTGTGTCCTGGGAAT 57.221 39.130 0.00 0.00 0.00 3.01
8585 9243 5.779241 ATTCTTTATCTGTGTCCTGGGAA 57.221 39.130 0.00 0.00 0.00 3.97
8586 9244 5.964477 ACTATTCTTTATCTGTGTCCTGGGA 59.036 40.000 0.00 0.00 0.00 4.37
8587 9245 6.051717 CACTATTCTTTATCTGTGTCCTGGG 58.948 44.000 0.00 0.00 0.00 4.45
8591 9249 6.036517 CACTGCACTATTCTTTATCTGTGTCC 59.963 42.308 0.00 0.00 0.00 4.02
8592 9250 6.813649 TCACTGCACTATTCTTTATCTGTGTC 59.186 38.462 0.00 0.00 0.00 3.67
8593 9251 6.701340 TCACTGCACTATTCTTTATCTGTGT 58.299 36.000 0.00 0.00 0.00 3.72
8594 9252 7.783090 ATCACTGCACTATTCTTTATCTGTG 57.217 36.000 0.00 0.00 0.00 3.66
8598 9285 7.854916 GCAAGAATCACTGCACTATTCTTTATC 59.145 37.037 17.41 10.07 43.85 1.75
8648 9338 8.565896 AGCTGATGTTAAACATATGTTCTGAA 57.434 30.769 21.02 12.69 39.27 3.02
8656 9346 6.484643 CCACTGCTAGCTGATGTTAAACATAT 59.515 38.462 26.29 0.00 39.27 1.78
8657 9347 5.817296 CCACTGCTAGCTGATGTTAAACATA 59.183 40.000 26.29 0.00 39.27 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.