Multiple sequence alignment - TraesCS4B01G246600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G246600 chr4B 100.000 3637 0 0 1 3637 510563803 510560167 0.000000e+00 6717.0
1 TraesCS4B01G246600 chr4B 91.403 2245 133 28 149 2362 510483189 510480974 0.000000e+00 3022.0
2 TraesCS4B01G246600 chr4B 88.080 1099 108 9 994 2078 510435159 510434070 0.000000e+00 1282.0
3 TraesCS4B01G246600 chr4B 95.494 577 26 0 2984 3560 289258102 289257526 0.000000e+00 922.0
4 TraesCS4B01G246600 chr4B 78.309 544 81 26 2398 2928 510480981 510480462 2.110000e-82 316.0
5 TraesCS4B01G246600 chr4B 80.679 383 40 12 516 882 510435660 510435296 2.150000e-67 267.0
6 TraesCS4B01G246600 chr4B 95.556 45 1 1 2746 2790 510480611 510480568 1.810000e-08 71.3
7 TraesCS4B01G246600 chr4D 89.400 2283 184 36 466 2728 414366261 414364017 0.000000e+00 2822.0
8 TraesCS4B01G246600 chr4D 89.315 2059 163 32 686 2728 414337658 414335641 0.000000e+00 2531.0
9 TraesCS4B01G246600 chr4D 93.662 1499 81 11 1148 2642 414359382 414357894 0.000000e+00 2230.0
10 TraesCS4B01G246600 chr4D 88.123 1103 108 9 994 2082 414328815 414327722 0.000000e+00 1290.0
11 TraesCS4B01G246600 chr4D 80.461 998 160 21 1449 2442 414349712 414348746 0.000000e+00 730.0
12 TraesCS4B01G246600 chr4D 95.225 356 16 1 2630 2985 414357576 414357222 2.450000e-156 562.0
13 TraesCS4B01G246600 chr4D 92.279 272 17 2 149 417 414339169 414338899 2.050000e-102 383.0
14 TraesCS4B01G246600 chr4D 93.411 258 11 5 407 658 414337909 414337652 9.530000e-101 377.0
15 TraesCS4B01G246600 chr4D 85.065 308 43 3 152 459 414366619 414366315 9.810000e-81 311.0
16 TraesCS4B01G246600 chr4D 83.333 282 28 9 516 779 414329348 414329068 3.630000e-60 243.0
17 TraesCS4B01G246600 chr4D 96.154 78 2 1 3561 3637 414357229 414357152 3.810000e-25 126.0
18 TraesCS4B01G246600 chr4A 91.198 1386 96 14 1414 2791 49040330 49041697 0.000000e+00 1860.0
19 TraesCS4B01G246600 chr4A 87.923 1093 107 11 999 2079 49199667 49200746 0.000000e+00 1264.0
20 TraesCS4B01G246600 chr4A 90.878 866 49 9 461 1315 49039373 49040219 0.000000e+00 1134.0
21 TraesCS4B01G246600 chr4A 80.729 384 41 22 516 882 49199152 49199519 5.990000e-68 268.0
22 TraesCS4B01G246600 chr4A 86.740 181 23 1 2805 2985 49041682 49041861 2.210000e-47 200.0
23 TraesCS4B01G246600 chr4A 93.590 78 4 1 3561 3637 49041854 49041931 8.250000e-22 115.0
24 TraesCS4B01G246600 chr4A 100.000 31 0 0 74 104 477047861 477047891 1.410000e-04 58.4
25 TraesCS4B01G246600 chr1B 95.424 590 24 3 2983 3571 555476741 555476154 0.000000e+00 937.0
26 TraesCS4B01G246600 chr1B 78.641 103 22 0 3 105 403622892 403622790 6.520000e-08 69.4
27 TraesCS4B01G246600 chr7B 95.675 578 24 1 2987 3564 217331466 217332042 0.000000e+00 928.0
28 TraesCS4B01G246600 chr5B 94.631 596 30 2 2983 3577 462633496 462634090 0.000000e+00 922.0
29 TraesCS4B01G246600 chr5B 94.772 593 29 2 2982 3572 486092777 486092185 0.000000e+00 922.0
30 TraesCS4B01G246600 chr5B 95.304 575 27 0 2986 3560 396853275 396852701 0.000000e+00 913.0
31 TraesCS4B01G246600 chr2B 95.197 583 26 2 2984 3564 658941258 658941840 0.000000e+00 920.0
32 TraesCS4B01G246600 chr6B 94.604 593 29 3 2973 3564 562280729 562280139 0.000000e+00 915.0
33 TraesCS4B01G246600 chr3B 94.549 587 30 1 2976 3562 372857627 372858211 0.000000e+00 905.0
34 TraesCS4B01G246600 chr3B 78.571 98 19 2 7 103 598972206 598972302 3.030000e-06 63.9
35 TraesCS4B01G246600 chr7D 79.012 162 21 12 1122 1276 595069029 595069184 8.310000e-17 99.0
36 TraesCS4B01G246600 chr7D 82.353 102 18 0 1 102 572872633 572872532 5.000000e-14 89.8
37 TraesCS4B01G246600 chr3D 91.525 59 5 0 1218 1276 10898134 10898076 8.370000e-12 82.4
38 TraesCS4B01G246600 chr3D 80.769 104 19 1 2 105 382945651 382945753 3.010000e-11 80.5
39 TraesCS4B01G246600 chr6D 81.250 80 15 0 25 104 261073266 261073345 8.430000e-07 65.8
40 TraesCS4B01G246600 chr6D 100.000 30 0 0 75 104 368736771 368736800 5.070000e-04 56.5
41 TraesCS4B01G246600 chr6A 88.889 54 5 1 53 105 447158285 447158232 8.430000e-07 65.8
42 TraesCS4B01G246600 chr3A 78.125 96 21 0 2 97 719290067 719289972 1.090000e-05 62.1
43 TraesCS4B01G246600 chr1D 77.778 99 22 0 7 105 415495396 415495494 1.090000e-05 62.1
44 TraesCS4B01G246600 chr1D 100.000 29 0 0 74 102 95571166 95571194 2.000000e-03 54.7
45 TraesCS4B01G246600 chr5D 100.000 29 0 0 74 102 217973149 217973121 2.000000e-03 54.7
46 TraesCS4B01G246600 chr2D 90.244 41 4 0 8 48 447342567 447342527 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G246600 chr4B 510560167 510563803 3636 True 6717.000000 6717 100.000000 1 3637 1 chr4B.!!$R2 3636
1 TraesCS4B01G246600 chr4B 510480462 510483189 2727 True 1136.433333 3022 88.422667 149 2928 3 chr4B.!!$R4 2779
2 TraesCS4B01G246600 chr4B 289257526 289258102 576 True 922.000000 922 95.494000 2984 3560 1 chr4B.!!$R1 576
3 TraesCS4B01G246600 chr4B 510434070 510435660 1590 True 774.500000 1282 84.379500 516 2078 2 chr4B.!!$R3 1562
4 TraesCS4B01G246600 chr4D 414364017 414366619 2602 True 1566.500000 2822 87.232500 152 2728 2 chr4D.!!$R5 2576
5 TraesCS4B01G246600 chr4D 414335641 414339169 3528 True 1097.000000 2531 91.668333 149 2728 3 chr4D.!!$R3 2579
6 TraesCS4B01G246600 chr4D 414357152 414359382 2230 True 972.666667 2230 95.013667 1148 3637 3 chr4D.!!$R4 2489
7 TraesCS4B01G246600 chr4D 414327722 414329348 1626 True 766.500000 1290 85.728000 516 2082 2 chr4D.!!$R2 1566
8 TraesCS4B01G246600 chr4D 414348746 414349712 966 True 730.000000 730 80.461000 1449 2442 1 chr4D.!!$R1 993
9 TraesCS4B01G246600 chr4A 49039373 49041931 2558 False 827.250000 1860 90.601500 461 3637 4 chr4A.!!$F2 3176
10 TraesCS4B01G246600 chr4A 49199152 49200746 1594 False 766.000000 1264 84.326000 516 2079 2 chr4A.!!$F3 1563
11 TraesCS4B01G246600 chr1B 555476154 555476741 587 True 937.000000 937 95.424000 2983 3571 1 chr1B.!!$R2 588
12 TraesCS4B01G246600 chr7B 217331466 217332042 576 False 928.000000 928 95.675000 2987 3564 1 chr7B.!!$F1 577
13 TraesCS4B01G246600 chr5B 462633496 462634090 594 False 922.000000 922 94.631000 2983 3577 1 chr5B.!!$F1 594
14 TraesCS4B01G246600 chr5B 486092185 486092777 592 True 922.000000 922 94.772000 2982 3572 1 chr5B.!!$R2 590
15 TraesCS4B01G246600 chr5B 396852701 396853275 574 True 913.000000 913 95.304000 2986 3560 1 chr5B.!!$R1 574
16 TraesCS4B01G246600 chr2B 658941258 658941840 582 False 920.000000 920 95.197000 2984 3564 1 chr2B.!!$F1 580
17 TraesCS4B01G246600 chr6B 562280139 562280729 590 True 915.000000 915 94.604000 2973 3564 1 chr6B.!!$R1 591
18 TraesCS4B01G246600 chr3B 372857627 372858211 584 False 905.000000 905 94.549000 2976 3562 1 chr3B.!!$F1 586

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 0.108756 GTCCTTAGGTCCTCGTGCAC 60.109 60.0 6.82 6.82 0.00 4.57 F
118 119 0.173708 CCTTAGGTCCTCGTGCACTC 59.826 60.0 16.19 0.12 0.00 3.51 F
133 134 0.321919 CACTCTTGCTTGGCAGCCTA 60.322 55.0 14.15 3.69 46.74 3.93 F
1062 2249 0.329596 AACACAGAGCTTCCCATCCC 59.670 55.0 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 3293 0.175760 GACAAGCGTCTGCCCATCTA 59.824 55.000 0.00 0.00 44.31 1.98 R
2021 3321 1.324740 CCCATCCAGGTGGCACAATG 61.325 60.000 20.82 16.61 44.16 2.82 R
2233 3535 6.069963 GGATATTGGAGCTACATGAGGGTAAT 60.070 42.308 0.00 0.00 0.00 1.89 R
3003 4666 0.178912 AGTGGGTTCGAGTTAGGGGT 60.179 55.000 0.00 0.00 0.00 4.95 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.834631 TCCCATGGACCGATACAGG 58.165 57.895 15.22 0.00 37.30 4.00
20 21 0.837272 CCCATGGACCGATACAGGTT 59.163 55.000 15.22 0.00 46.09 3.50
21 22 1.475034 CCCATGGACCGATACAGGTTG 60.475 57.143 15.22 0.00 46.09 3.77
22 23 1.475034 CCATGGACCGATACAGGTTGG 60.475 57.143 5.56 0.00 46.09 3.77
23 24 0.180406 ATGGACCGATACAGGTTGGC 59.820 55.000 0.00 0.00 46.09 4.52
24 25 1.520787 GGACCGATACAGGTTGGCG 60.521 63.158 0.00 0.00 46.09 5.69
25 26 1.217244 GACCGATACAGGTTGGCGT 59.783 57.895 0.00 0.00 46.09 5.68
26 27 0.390735 GACCGATACAGGTTGGCGTT 60.391 55.000 0.00 0.00 46.09 4.84
27 28 0.672401 ACCGATACAGGTTGGCGTTG 60.672 55.000 0.00 0.00 43.00 4.10
28 29 1.366111 CCGATACAGGTTGGCGTTGG 61.366 60.000 0.00 0.00 0.00 3.77
29 30 0.390603 CGATACAGGTTGGCGTTGGA 60.391 55.000 0.00 0.00 0.00 3.53
30 31 1.742411 CGATACAGGTTGGCGTTGGAT 60.742 52.381 0.00 0.00 0.00 3.41
31 32 1.670811 GATACAGGTTGGCGTTGGATG 59.329 52.381 0.00 0.00 0.00 3.51
32 33 0.322098 TACAGGTTGGCGTTGGATGG 60.322 55.000 0.00 0.00 0.00 3.51
33 34 2.676471 AGGTTGGCGTTGGATGGC 60.676 61.111 0.00 0.00 0.00 4.40
34 35 2.676471 GGTTGGCGTTGGATGGCT 60.676 61.111 0.00 0.00 0.00 4.75
35 36 2.275380 GGTTGGCGTTGGATGGCTT 61.275 57.895 0.00 0.00 0.00 4.35
36 37 1.665442 GTTGGCGTTGGATGGCTTT 59.335 52.632 0.00 0.00 0.00 3.51
37 38 0.388520 GTTGGCGTTGGATGGCTTTC 60.389 55.000 0.00 0.00 0.00 2.62
38 39 1.861542 TTGGCGTTGGATGGCTTTCG 61.862 55.000 0.00 0.00 0.00 3.46
39 40 2.332654 GGCGTTGGATGGCTTTCGT 61.333 57.895 0.00 0.00 0.00 3.85
40 41 1.022451 GGCGTTGGATGGCTTTCGTA 61.022 55.000 0.00 0.00 0.00 3.43
41 42 0.373716 GCGTTGGATGGCTTTCGTAG 59.626 55.000 0.00 0.00 0.00 3.51
42 43 1.722011 CGTTGGATGGCTTTCGTAGT 58.278 50.000 0.00 0.00 0.00 2.73
43 44 2.073816 CGTTGGATGGCTTTCGTAGTT 58.926 47.619 0.00 0.00 0.00 2.24
44 45 2.093783 CGTTGGATGGCTTTCGTAGTTC 59.906 50.000 0.00 0.00 0.00 3.01
45 46 2.004583 TGGATGGCTTTCGTAGTTCG 57.995 50.000 0.00 0.00 41.41 3.95
46 47 1.287425 GGATGGCTTTCGTAGTTCGG 58.713 55.000 0.00 0.00 40.32 4.30
47 48 1.134907 GGATGGCTTTCGTAGTTCGGA 60.135 52.381 0.00 0.00 40.32 4.55
48 49 2.194271 GATGGCTTTCGTAGTTCGGAG 58.806 52.381 0.00 0.00 40.32 4.63
49 50 1.250328 TGGCTTTCGTAGTTCGGAGA 58.750 50.000 0.00 0.00 40.32 3.71
50 51 1.201647 TGGCTTTCGTAGTTCGGAGAG 59.798 52.381 0.00 0.00 38.43 3.20
51 52 1.270068 GCTTTCGTAGTTCGGAGAGC 58.730 55.000 0.00 0.00 38.43 4.09
52 53 1.536149 CTTTCGTAGTTCGGAGAGCG 58.464 55.000 0.00 0.00 44.46 5.03
53 54 0.455633 TTTCGTAGTTCGGAGAGCGC 60.456 55.000 0.00 0.00 44.46 5.92
54 55 2.573341 TTCGTAGTTCGGAGAGCGCG 62.573 60.000 0.00 0.00 44.46 6.86
55 56 2.278013 GTAGTTCGGAGAGCGCGG 60.278 66.667 8.83 0.00 44.46 6.46
56 57 2.749044 TAGTTCGGAGAGCGCGGT 60.749 61.111 12.23 12.23 44.46 5.68
57 58 2.758089 TAGTTCGGAGAGCGCGGTC 61.758 63.158 29.78 29.78 44.46 4.79
61 62 4.735132 CGGAGAGCGCGGTCCAAA 62.735 66.667 32.59 0.00 32.55 3.28
62 63 3.119096 GGAGAGCGCGGTCCAAAC 61.119 66.667 32.59 20.81 32.55 2.93
63 64 3.479269 GAGAGCGCGGTCCAAACG 61.479 66.667 32.59 0.00 0.00 3.60
66 67 4.922026 AGCGCGGTCCAAACGGTT 62.922 61.111 4.23 0.00 33.05 4.44
67 68 3.043121 GCGCGGTCCAAACGGTTA 61.043 61.111 8.83 0.00 0.00 2.85
68 69 2.855325 CGCGGTCCAAACGGTTAC 59.145 61.111 0.00 0.00 0.00 2.50
69 70 1.955157 CGCGGTCCAAACGGTTACA 60.955 57.895 0.00 0.00 0.00 2.41
70 71 1.497223 CGCGGTCCAAACGGTTACAA 61.497 55.000 0.00 0.00 0.00 2.41
71 72 0.662085 GCGGTCCAAACGGTTACAAA 59.338 50.000 0.00 0.00 0.00 2.83
72 73 1.065251 GCGGTCCAAACGGTTACAAAA 59.935 47.619 0.00 0.00 0.00 2.44
73 74 2.855570 GCGGTCCAAACGGTTACAAAAG 60.856 50.000 0.00 0.00 0.00 2.27
74 75 2.287129 CGGTCCAAACGGTTACAAAAGG 60.287 50.000 0.00 0.00 0.00 3.11
75 76 2.689471 GGTCCAAACGGTTACAAAAGGT 59.311 45.455 0.00 0.00 0.00 3.50
76 77 3.130869 GGTCCAAACGGTTACAAAAGGTT 59.869 43.478 0.00 0.00 0.00 3.50
77 78 4.381825 GGTCCAAACGGTTACAAAAGGTTT 60.382 41.667 0.00 0.00 0.00 3.27
78 79 4.563580 GTCCAAACGGTTACAAAAGGTTTG 59.436 41.667 7.71 7.71 44.18 2.93
79 80 4.461781 TCCAAACGGTTACAAAAGGTTTGA 59.538 37.500 14.45 1.40 46.25 2.69
80 81 4.801516 CCAAACGGTTACAAAAGGTTTGAG 59.198 41.667 14.45 3.74 46.25 3.02
81 82 4.642445 AACGGTTACAAAAGGTTTGAGG 57.358 40.909 7.68 0.00 0.00 3.86
82 83 2.953648 ACGGTTACAAAAGGTTTGAGGG 59.046 45.455 7.68 0.00 0.00 4.30
83 84 2.953648 CGGTTACAAAAGGTTTGAGGGT 59.046 45.455 7.68 0.00 0.00 4.34
84 85 3.004002 CGGTTACAAAAGGTTTGAGGGTC 59.996 47.826 7.68 0.00 0.00 4.46
85 86 3.004002 GGTTACAAAAGGTTTGAGGGTCG 59.996 47.826 7.68 0.00 0.00 4.79
86 87 1.687563 ACAAAAGGTTTGAGGGTCGG 58.312 50.000 7.68 0.00 0.00 4.79
87 88 0.313987 CAAAAGGTTTGAGGGTCGGC 59.686 55.000 0.00 0.00 0.00 5.54
88 89 1.170290 AAAAGGTTTGAGGGTCGGCG 61.170 55.000 0.00 0.00 0.00 6.46
89 90 2.333701 AAAGGTTTGAGGGTCGGCGT 62.334 55.000 6.85 0.00 0.00 5.68
90 91 2.281276 GGTTTGAGGGTCGGCGTT 60.281 61.111 6.85 0.00 0.00 4.84
91 92 2.613506 GGTTTGAGGGTCGGCGTTG 61.614 63.158 6.85 0.00 0.00 4.10
92 93 2.281208 TTTGAGGGTCGGCGTTGG 60.281 61.111 6.85 0.00 0.00 3.77
93 94 2.809307 TTTGAGGGTCGGCGTTGGA 61.809 57.895 6.85 0.00 0.00 3.53
94 95 2.725203 TTTGAGGGTCGGCGTTGGAG 62.725 60.000 6.85 0.00 0.00 3.86
95 96 3.379445 GAGGGTCGGCGTTGGAGA 61.379 66.667 6.85 0.00 0.00 3.71
96 97 2.683933 AGGGTCGGCGTTGGAGAT 60.684 61.111 6.85 0.00 0.00 2.75
97 98 2.511600 GGGTCGGCGTTGGAGATG 60.512 66.667 6.85 0.00 0.00 2.90
98 99 2.264794 GGTCGGCGTTGGAGATGT 59.735 61.111 6.85 0.00 0.00 3.06
99 100 1.810030 GGTCGGCGTTGGAGATGTC 60.810 63.158 6.85 0.00 0.00 3.06
100 101 1.810030 GTCGGCGTTGGAGATGTCC 60.810 63.158 6.85 0.83 44.24 4.02
101 102 1.982395 TCGGCGTTGGAGATGTCCT 60.982 57.895 10.72 0.00 44.30 3.85
102 103 1.079127 CGGCGTTGGAGATGTCCTT 60.079 57.895 10.72 0.00 44.30 3.36
103 104 0.174845 CGGCGTTGGAGATGTCCTTA 59.825 55.000 10.72 0.00 44.30 2.69
104 105 1.802880 CGGCGTTGGAGATGTCCTTAG 60.803 57.143 10.72 2.38 44.30 2.18
105 106 1.473434 GGCGTTGGAGATGTCCTTAGG 60.473 57.143 10.72 5.36 44.30 2.69
106 107 1.207329 GCGTTGGAGATGTCCTTAGGT 59.793 52.381 10.72 0.00 44.30 3.08
107 108 2.738964 GCGTTGGAGATGTCCTTAGGTC 60.739 54.545 10.72 0.00 44.30 3.85
108 109 2.159085 CGTTGGAGATGTCCTTAGGTCC 60.159 54.545 10.72 0.00 44.30 4.46
109 110 3.108376 GTTGGAGATGTCCTTAGGTCCT 58.892 50.000 10.72 0.00 44.30 3.85
110 111 3.033659 TGGAGATGTCCTTAGGTCCTC 57.966 52.381 10.72 0.00 44.30 3.71
111 112 1.957877 GGAGATGTCCTTAGGTCCTCG 59.042 57.143 0.54 0.00 40.17 4.63
112 113 2.657143 GAGATGTCCTTAGGTCCTCGT 58.343 52.381 0.00 0.00 0.00 4.18
113 114 2.359531 GAGATGTCCTTAGGTCCTCGTG 59.640 54.545 0.00 0.00 0.00 4.35
114 115 0.824759 ATGTCCTTAGGTCCTCGTGC 59.175 55.000 0.00 0.00 0.00 5.34
115 116 0.541063 TGTCCTTAGGTCCTCGTGCA 60.541 55.000 0.00 0.00 0.00 4.57
116 117 0.108756 GTCCTTAGGTCCTCGTGCAC 60.109 60.000 6.82 6.82 0.00 4.57
117 118 0.251653 TCCTTAGGTCCTCGTGCACT 60.252 55.000 16.19 0.00 0.00 4.40
118 119 0.173708 CCTTAGGTCCTCGTGCACTC 59.826 60.000 16.19 0.12 0.00 3.51
119 120 1.178276 CTTAGGTCCTCGTGCACTCT 58.822 55.000 16.19 5.28 0.00 3.24
120 121 1.546476 CTTAGGTCCTCGTGCACTCTT 59.454 52.381 16.19 0.00 0.00 2.85
121 122 0.888619 TAGGTCCTCGTGCACTCTTG 59.111 55.000 16.19 0.00 0.00 3.02
130 131 2.257676 GCACTCTTGCTTGGCAGC 59.742 61.111 2.53 2.53 46.17 5.25
131 132 2.960170 CACTCTTGCTTGGCAGCC 59.040 61.111 3.66 3.66 46.74 4.85
132 133 1.602888 CACTCTTGCTTGGCAGCCT 60.603 57.895 14.15 0.00 46.74 4.58
133 134 0.321919 CACTCTTGCTTGGCAGCCTA 60.322 55.000 14.15 3.69 46.74 3.93
134 135 0.401738 ACTCTTGCTTGGCAGCCTAA 59.598 50.000 14.15 4.57 46.74 2.69
135 136 1.005215 ACTCTTGCTTGGCAGCCTAAT 59.995 47.619 14.15 0.00 46.74 1.73
136 137 1.674962 CTCTTGCTTGGCAGCCTAATC 59.325 52.381 14.15 1.94 46.74 1.75
137 138 0.743097 CTTGCTTGGCAGCCTAATCC 59.257 55.000 14.15 0.00 46.74 3.01
138 139 0.332632 TTGCTTGGCAGCCTAATCCT 59.667 50.000 14.15 0.00 46.74 3.24
139 140 0.394762 TGCTTGGCAGCCTAATCCTG 60.395 55.000 14.15 0.00 46.74 3.86
140 141 0.394899 GCTTGGCAGCCTAATCCTGT 60.395 55.000 14.15 0.00 40.61 4.00
141 142 1.957113 GCTTGGCAGCCTAATCCTGTT 60.957 52.381 14.15 0.00 40.61 3.16
142 143 2.450476 CTTGGCAGCCTAATCCTGTTT 58.550 47.619 14.15 0.00 32.93 2.83
143 144 2.603075 TGGCAGCCTAATCCTGTTTT 57.397 45.000 14.15 0.00 32.93 2.43
144 145 2.170166 TGGCAGCCTAATCCTGTTTTG 58.830 47.619 14.15 0.00 32.93 2.44
145 146 2.224992 TGGCAGCCTAATCCTGTTTTGA 60.225 45.455 14.15 0.00 32.93 2.69
146 147 2.164422 GGCAGCCTAATCCTGTTTTGAC 59.836 50.000 3.29 0.00 32.93 3.18
147 148 2.164422 GCAGCCTAATCCTGTTTTGACC 59.836 50.000 0.00 0.00 32.93 4.02
202 203 1.566703 TCTGGGTGAAAACCTTGGTCA 59.433 47.619 0.00 0.00 0.00 4.02
207 208 3.133901 GGGTGAAAACCTTGGTCAATTGT 59.866 43.478 5.13 0.00 0.00 2.71
271 272 1.125711 AGGGCGTTGTAGTGGAACCT 61.126 55.000 0.00 0.00 37.80 3.50
283 284 3.248024 AGTGGAACCTAGGTGTCATTGA 58.752 45.455 17.14 0.00 37.80 2.57
734 1810 1.609208 AGCAAGCACTTGGAAATCGT 58.391 45.000 12.09 0.00 40.74 3.73
778 1865 5.812642 CAGAAAGTGTCAAGCTAATACCGAT 59.187 40.000 0.00 0.00 0.00 4.18
779 1866 5.812642 AGAAAGTGTCAAGCTAATACCGATG 59.187 40.000 0.00 0.00 0.00 3.84
780 1867 5.339008 AAGTGTCAAGCTAATACCGATGA 57.661 39.130 0.00 0.00 0.00 2.92
781 1868 4.938080 AGTGTCAAGCTAATACCGATGAG 58.062 43.478 0.00 0.00 0.00 2.90
783 1870 3.958147 TGTCAAGCTAATACCGATGAGGA 59.042 43.478 0.00 0.00 45.00 3.71
784 1871 4.588951 TGTCAAGCTAATACCGATGAGGAT 59.411 41.667 0.00 0.00 45.00 3.24
785 1872 5.070446 TGTCAAGCTAATACCGATGAGGATT 59.930 40.000 0.00 0.00 45.00 3.01
788 1875 5.398603 AGCTAATACCGATGAGGATTGAG 57.601 43.478 0.00 0.00 45.00 3.02
856 1973 7.427238 CGTGTCTGCGCGTATATAAAATATA 57.573 36.000 8.43 0.00 42.94 0.86
857 1974 8.046841 CGTGTCTGCGCGTATATAAAATATAT 57.953 34.615 8.43 0.00 42.94 0.86
858 1975 9.161684 CGTGTCTGCGCGTATATAAAATATATA 57.838 33.333 8.43 0.00 42.94 0.86
1030 2207 7.121759 CCAAATCCTCACTGATACAAGAACAAT 59.878 37.037 0.00 0.00 0.00 2.71
1059 2246 2.616510 GCTACAACACAGAGCTTCCCAT 60.617 50.000 0.00 0.00 33.28 4.00
1060 2247 2.191128 ACAACACAGAGCTTCCCATC 57.809 50.000 0.00 0.00 0.00 3.51
1061 2248 1.271597 ACAACACAGAGCTTCCCATCC 60.272 52.381 0.00 0.00 0.00 3.51
1062 2249 0.329596 AACACAGAGCTTCCCATCCC 59.670 55.000 0.00 0.00 0.00 3.85
1063 2250 0.842030 ACACAGAGCTTCCCATCCCA 60.842 55.000 0.00 0.00 0.00 4.37
1267 2462 1.217511 CGCTGATGCCTCTGACACT 59.782 57.895 0.05 0.00 35.36 3.55
1315 2610 4.523943 TCATGTATGGGCCAATTGAATAGC 59.476 41.667 11.89 1.03 0.00 2.97
1327 2622 6.144854 CCAATTGAATAGCGAATACCACATG 58.855 40.000 7.12 0.00 0.00 3.21
1404 2700 0.604578 GGTACGGCAACCTGTACTCA 59.395 55.000 11.34 0.00 40.56 3.41
1527 2823 1.062587 GATCCGATGTTCTGCAAACCG 59.937 52.381 8.60 6.45 0.00 4.44
1638 2934 1.840630 CGCACTTCGACATGGCACAA 61.841 55.000 0.00 0.00 41.67 3.33
1658 2954 1.626356 CCGGCCTGGGAGAAGATTGA 61.626 60.000 0.00 0.00 0.00 2.57
1726 3022 9.256228 ACCTACCTACACATGAGTATATATTGG 57.744 37.037 0.00 1.02 0.00 3.16
1762 3062 5.623673 GTGTGCAAGTTACTAAAACCGATTG 59.376 40.000 0.00 0.00 0.00 2.67
1805 3105 2.519780 GGTGGGGTGCGGTTCAAA 60.520 61.111 0.00 0.00 0.00 2.69
1828 3128 9.590451 CAAAATTGCTGGTCATGATTACTTTAT 57.410 29.630 0.00 0.00 0.00 1.40
1897 3197 4.916041 TGGATGTCAAGACCTCTGATTT 57.084 40.909 5.66 0.00 0.00 2.17
1993 3293 4.452825 CTCTCATTCAGATTGACCAGCAT 58.547 43.478 0.00 0.00 0.00 3.79
2040 3340 1.000739 ATTGTGCCACCTGGATGGG 59.999 57.895 14.47 8.05 40.43 4.00
2274 3576 7.043565 TCCAATATCCTTGTACGAGTTTAACC 58.956 38.462 9.32 0.00 0.00 2.85
2365 3668 8.564574 GTTACCTCAAATGTTTATTCTCACACA 58.435 33.333 0.00 0.00 0.00 3.72
2474 3777 3.666274 TGTACAATACAACCCTTGGACG 58.334 45.455 0.00 0.00 38.75 4.79
2621 3925 3.304190 CGTAAAAGGCCTACCAAACACAC 60.304 47.826 5.16 0.00 39.06 3.82
2625 3929 2.028876 AGGCCTACCAAACACACAAAC 58.971 47.619 1.29 0.00 39.06 2.93
2869 4532 8.619546 GGAAGAATCTAAGATCAACATCCAAAG 58.380 37.037 0.00 0.00 0.00 2.77
2887 4550 7.615582 TCCAAAGTTGACAAGCTCATAATAG 57.384 36.000 0.00 0.00 0.00 1.73
2913 4576 2.479049 GCCGCTCTTACATCGAACTGTA 60.479 50.000 0.00 0.00 0.00 2.74
2940 4603 0.961019 GGGTGCAAAGACAAGCATGA 59.039 50.000 0.00 0.00 43.44 3.07
3078 4741 6.773638 TCAAATTTGCCCCTAAAAAGCATTA 58.226 32.000 13.54 0.00 36.20 1.90
3112 4775 1.146774 TGCCCTTCCATCTGGTCAAAA 59.853 47.619 0.00 0.00 36.34 2.44
3205 4868 8.659925 ATCAAAATGCTCATAAAAACAACACA 57.340 26.923 0.00 0.00 0.00 3.72
3234 4897 5.049129 TGCACATGTCATTTACGTTCATGAA 60.049 36.000 3.38 3.38 39.07 2.57
3296 4960 7.995463 TAAAATTAATTTAGGGCGAATGCAC 57.005 32.000 13.68 0.00 37.31 4.57
3513 5177 4.183865 GAGCACATCAAAAATTTAGGGGC 58.816 43.478 0.00 0.00 0.00 5.80
3526 5190 5.975988 ATTTAGGGGCAAATCTGAGAGTA 57.024 39.130 0.00 0.00 0.00 2.59
3563 5227 7.480760 GGGCATAAATGTAAATGTCCCATAT 57.519 36.000 8.83 0.00 41.18 1.78
3624 5288 1.985159 TGACAATGAGGTTAGCAGGGT 59.015 47.619 0.00 0.00 0.00 4.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.031515 ACCTGTATCGGTCCATGGGA 60.032 55.000 13.02 1.10 29.14 4.37
3 4 1.953559 CCAACCTGTATCGGTCCATG 58.046 55.000 0.00 0.00 35.89 3.66
4 5 0.180406 GCCAACCTGTATCGGTCCAT 59.820 55.000 0.00 0.00 35.89 3.41
5 6 1.600107 GCCAACCTGTATCGGTCCA 59.400 57.895 0.00 0.00 35.89 4.02
6 7 1.520787 CGCCAACCTGTATCGGTCC 60.521 63.158 0.00 0.00 35.89 4.46
7 8 0.390735 AACGCCAACCTGTATCGGTC 60.391 55.000 0.00 0.00 35.89 4.79
8 9 0.672401 CAACGCCAACCTGTATCGGT 60.672 55.000 0.00 0.00 39.48 4.69
9 10 1.366111 CCAACGCCAACCTGTATCGG 61.366 60.000 0.00 0.00 0.00 4.18
10 11 0.390603 TCCAACGCCAACCTGTATCG 60.391 55.000 0.00 0.00 0.00 2.92
11 12 1.670811 CATCCAACGCCAACCTGTATC 59.329 52.381 0.00 0.00 0.00 2.24
12 13 1.681780 CCATCCAACGCCAACCTGTAT 60.682 52.381 0.00 0.00 0.00 2.29
13 14 0.322098 CCATCCAACGCCAACCTGTA 60.322 55.000 0.00 0.00 0.00 2.74
14 15 1.603455 CCATCCAACGCCAACCTGT 60.603 57.895 0.00 0.00 0.00 4.00
15 16 2.993471 GCCATCCAACGCCAACCTG 61.993 63.158 0.00 0.00 0.00 4.00
16 17 2.676471 GCCATCCAACGCCAACCT 60.676 61.111 0.00 0.00 0.00 3.50
17 18 1.815817 AAAGCCATCCAACGCCAACC 61.816 55.000 0.00 0.00 0.00 3.77
18 19 0.388520 GAAAGCCATCCAACGCCAAC 60.389 55.000 0.00 0.00 0.00 3.77
19 20 1.861542 CGAAAGCCATCCAACGCCAA 61.862 55.000 0.00 0.00 0.00 4.52
20 21 2.331893 CGAAAGCCATCCAACGCCA 61.332 57.895 0.00 0.00 0.00 5.69
21 22 1.022451 TACGAAAGCCATCCAACGCC 61.022 55.000 0.00 0.00 0.00 5.68
22 23 0.373716 CTACGAAAGCCATCCAACGC 59.626 55.000 0.00 0.00 0.00 4.84
23 24 1.722011 ACTACGAAAGCCATCCAACG 58.278 50.000 0.00 0.00 0.00 4.10
24 25 2.093783 CGAACTACGAAAGCCATCCAAC 59.906 50.000 0.00 0.00 45.77 3.77
25 26 2.343101 CGAACTACGAAAGCCATCCAA 58.657 47.619 0.00 0.00 45.77 3.53
26 27 1.404986 CCGAACTACGAAAGCCATCCA 60.405 52.381 0.00 0.00 45.77 3.41
27 28 1.134907 TCCGAACTACGAAAGCCATCC 60.135 52.381 0.00 0.00 45.77 3.51
28 29 2.159282 TCTCCGAACTACGAAAGCCATC 60.159 50.000 0.00 0.00 45.77 3.51
29 30 1.822990 TCTCCGAACTACGAAAGCCAT 59.177 47.619 0.00 0.00 45.77 4.40
30 31 1.201647 CTCTCCGAACTACGAAAGCCA 59.798 52.381 0.00 0.00 45.77 4.75
31 32 1.910688 CTCTCCGAACTACGAAAGCC 58.089 55.000 0.00 0.00 45.77 4.35
32 33 1.270068 GCTCTCCGAACTACGAAAGC 58.730 55.000 0.00 0.00 45.77 3.51
33 34 1.536149 CGCTCTCCGAACTACGAAAG 58.464 55.000 0.00 0.00 45.77 2.62
34 35 0.455633 GCGCTCTCCGAACTACGAAA 60.456 55.000 0.00 0.00 45.77 3.46
35 36 1.136147 GCGCTCTCCGAACTACGAA 59.864 57.895 0.00 0.00 45.77 3.85
36 37 2.789917 GCGCTCTCCGAACTACGA 59.210 61.111 0.00 0.00 45.77 3.43
37 38 2.648102 CGCGCTCTCCGAACTACG 60.648 66.667 5.56 0.00 40.02 3.51
38 39 2.278013 CCGCGCTCTCCGAACTAC 60.278 66.667 5.56 0.00 40.02 2.73
39 40 2.749044 ACCGCGCTCTCCGAACTA 60.749 61.111 5.56 0.00 40.02 2.24
40 41 4.117661 GACCGCGCTCTCCGAACT 62.118 66.667 5.56 0.00 40.02 3.01
44 45 4.735132 TTTGGACCGCGCTCTCCG 62.735 66.667 5.56 0.00 40.75 4.63
45 46 3.119096 GTTTGGACCGCGCTCTCC 61.119 66.667 5.56 9.67 0.00 3.71
46 47 3.479269 CGTTTGGACCGCGCTCTC 61.479 66.667 5.56 0.00 0.00 3.20
49 50 3.518419 TAACCGTTTGGACCGCGCT 62.518 57.895 5.56 0.00 39.21 5.92
50 51 3.043121 TAACCGTTTGGACCGCGC 61.043 61.111 0.00 0.00 39.21 6.86
51 52 1.497223 TTGTAACCGTTTGGACCGCG 61.497 55.000 0.00 0.00 39.21 6.46
52 53 0.662085 TTTGTAACCGTTTGGACCGC 59.338 50.000 0.00 0.00 39.21 5.68
53 54 2.287129 CCTTTTGTAACCGTTTGGACCG 60.287 50.000 0.00 0.00 39.21 4.79
54 55 2.689471 ACCTTTTGTAACCGTTTGGACC 59.311 45.455 0.00 0.00 39.21 4.46
55 56 4.374843 AACCTTTTGTAACCGTTTGGAC 57.625 40.909 0.00 0.00 39.21 4.02
56 57 4.461781 TCAAACCTTTTGTAACCGTTTGGA 59.538 37.500 10.16 0.00 42.14 3.53
57 58 4.745649 TCAAACCTTTTGTAACCGTTTGG 58.254 39.130 10.16 0.00 42.14 3.28
58 59 4.801516 CCTCAAACCTTTTGTAACCGTTTG 59.198 41.667 0.00 0.00 42.84 2.93
59 60 4.142116 CCCTCAAACCTTTTGTAACCGTTT 60.142 41.667 0.00 0.00 0.00 3.60
60 61 3.382227 CCCTCAAACCTTTTGTAACCGTT 59.618 43.478 0.00 0.00 0.00 4.44
61 62 2.953648 CCCTCAAACCTTTTGTAACCGT 59.046 45.455 0.00 0.00 0.00 4.83
62 63 2.953648 ACCCTCAAACCTTTTGTAACCG 59.046 45.455 0.00 0.00 0.00 4.44
63 64 3.004002 CGACCCTCAAACCTTTTGTAACC 59.996 47.826 0.00 0.00 0.00 2.85
64 65 3.004002 CCGACCCTCAAACCTTTTGTAAC 59.996 47.826 0.00 0.00 0.00 2.50
65 66 3.215975 CCGACCCTCAAACCTTTTGTAA 58.784 45.455 0.00 0.00 0.00 2.41
66 67 2.853705 CCGACCCTCAAACCTTTTGTA 58.146 47.619 0.00 0.00 0.00 2.41
67 68 1.687563 CCGACCCTCAAACCTTTTGT 58.312 50.000 0.00 0.00 0.00 2.83
68 69 0.313987 GCCGACCCTCAAACCTTTTG 59.686 55.000 0.00 0.00 0.00 2.44
69 70 1.170290 CGCCGACCCTCAAACCTTTT 61.170 55.000 0.00 0.00 0.00 2.27
70 71 1.599797 CGCCGACCCTCAAACCTTT 60.600 57.895 0.00 0.00 0.00 3.11
71 72 2.032071 CGCCGACCCTCAAACCTT 59.968 61.111 0.00 0.00 0.00 3.50
72 73 2.814835 AACGCCGACCCTCAAACCT 61.815 57.895 0.00 0.00 0.00 3.50
73 74 2.281276 AACGCCGACCCTCAAACC 60.281 61.111 0.00 0.00 0.00 3.27
74 75 2.613506 CCAACGCCGACCCTCAAAC 61.614 63.158 0.00 0.00 0.00 2.93
75 76 2.281208 CCAACGCCGACCCTCAAA 60.281 61.111 0.00 0.00 0.00 2.69
76 77 3.234630 CTCCAACGCCGACCCTCAA 62.235 63.158 0.00 0.00 0.00 3.02
77 78 3.691342 CTCCAACGCCGACCCTCA 61.691 66.667 0.00 0.00 0.00 3.86
78 79 2.722201 ATCTCCAACGCCGACCCTC 61.722 63.158 0.00 0.00 0.00 4.30
79 80 2.683933 ATCTCCAACGCCGACCCT 60.684 61.111 0.00 0.00 0.00 4.34
80 81 2.511600 CATCTCCAACGCCGACCC 60.512 66.667 0.00 0.00 0.00 4.46
81 82 1.810030 GACATCTCCAACGCCGACC 60.810 63.158 0.00 0.00 0.00 4.79
82 83 1.810030 GGACATCTCCAACGCCGAC 60.810 63.158 0.00 0.00 36.42 4.79
83 84 1.541310 AAGGACATCTCCAACGCCGA 61.541 55.000 0.00 0.00 39.39 5.54
84 85 0.174845 TAAGGACATCTCCAACGCCG 59.825 55.000 0.00 0.00 39.39 6.46
85 86 1.473434 CCTAAGGACATCTCCAACGCC 60.473 57.143 0.00 0.00 39.39 5.68
86 87 1.207329 ACCTAAGGACATCTCCAACGC 59.793 52.381 0.00 0.00 39.39 4.84
87 88 2.159085 GGACCTAAGGACATCTCCAACG 60.159 54.545 0.00 0.00 39.39 4.10
88 89 3.108376 AGGACCTAAGGACATCTCCAAC 58.892 50.000 0.00 0.00 39.39 3.77
89 90 3.375699 GAGGACCTAAGGACATCTCCAA 58.624 50.000 0.00 0.00 39.39 3.53
90 91 2.687014 CGAGGACCTAAGGACATCTCCA 60.687 54.545 0.00 0.00 39.39 3.86
91 92 1.957877 CGAGGACCTAAGGACATCTCC 59.042 57.143 0.00 0.00 36.71 3.71
92 93 2.359531 CACGAGGACCTAAGGACATCTC 59.640 54.545 0.00 0.00 0.00 2.75
93 94 2.379972 CACGAGGACCTAAGGACATCT 58.620 52.381 0.00 0.00 0.00 2.90
94 95 1.202428 GCACGAGGACCTAAGGACATC 60.202 57.143 0.00 0.00 0.00 3.06
95 96 0.824759 GCACGAGGACCTAAGGACAT 59.175 55.000 0.00 0.00 0.00 3.06
96 97 0.541063 TGCACGAGGACCTAAGGACA 60.541 55.000 0.00 0.00 0.00 4.02
97 98 0.108756 GTGCACGAGGACCTAAGGAC 60.109 60.000 0.00 0.00 0.00 3.85
98 99 0.251653 AGTGCACGAGGACCTAAGGA 60.252 55.000 12.01 0.00 36.65 3.36
99 100 0.173708 GAGTGCACGAGGACCTAAGG 59.826 60.000 12.01 0.00 36.65 2.69
100 101 1.178276 AGAGTGCACGAGGACCTAAG 58.822 55.000 12.01 0.00 36.65 2.18
101 102 1.272490 CAAGAGTGCACGAGGACCTAA 59.728 52.381 12.01 0.00 36.65 2.69
102 103 0.888619 CAAGAGTGCACGAGGACCTA 59.111 55.000 12.01 0.00 36.65 3.08
103 104 1.668294 CAAGAGTGCACGAGGACCT 59.332 57.895 12.01 0.00 36.65 3.85
104 105 4.268687 CAAGAGTGCACGAGGACC 57.731 61.111 12.01 0.00 36.65 4.46
122 123 2.134789 AACAGGATTAGGCTGCCAAG 57.865 50.000 22.65 4.58 0.00 3.61
123 124 2.562298 CAAAACAGGATTAGGCTGCCAA 59.438 45.455 22.65 13.29 0.00 4.52
124 125 2.170166 CAAAACAGGATTAGGCTGCCA 58.830 47.619 22.65 0.22 0.00 4.92
125 126 2.164422 GTCAAAACAGGATTAGGCTGCC 59.836 50.000 11.65 11.65 0.00 4.85
126 127 2.164422 GGTCAAAACAGGATTAGGCTGC 59.836 50.000 0.00 0.00 0.00 5.25
127 128 2.420022 CGGTCAAAACAGGATTAGGCTG 59.580 50.000 0.00 0.00 0.00 4.85
128 129 2.304761 TCGGTCAAAACAGGATTAGGCT 59.695 45.455 0.00 0.00 0.00 4.58
129 130 2.706890 TCGGTCAAAACAGGATTAGGC 58.293 47.619 0.00 0.00 0.00 3.93
130 131 4.261801 ACATCGGTCAAAACAGGATTAGG 58.738 43.478 0.00 0.00 0.00 2.69
131 132 5.181245 ACAACATCGGTCAAAACAGGATTAG 59.819 40.000 0.00 0.00 0.00 1.73
132 133 5.067273 ACAACATCGGTCAAAACAGGATTA 58.933 37.500 0.00 0.00 0.00 1.75
133 134 3.888930 ACAACATCGGTCAAAACAGGATT 59.111 39.130 0.00 0.00 0.00 3.01
134 135 3.486383 ACAACATCGGTCAAAACAGGAT 58.514 40.909 0.00 0.00 0.00 3.24
135 136 2.875933 GACAACATCGGTCAAAACAGGA 59.124 45.455 0.00 0.00 35.36 3.86
136 137 3.268013 GACAACATCGGTCAAAACAGG 57.732 47.619 0.00 0.00 35.36 4.00
170 171 5.623956 TTTCACCCAGAACTCTAACAAGA 57.376 39.130 0.00 0.00 35.56 3.02
202 203 3.419759 GCCGCGTCCGACACAATT 61.420 61.111 4.92 0.00 36.29 2.32
225 226 0.310543 GAAAGCGGTGCAATGTGTCA 59.689 50.000 0.00 0.00 0.00 3.58
271 272 3.973206 AACCACGATCAATGACACCTA 57.027 42.857 0.00 0.00 0.00 3.08
283 284 3.955650 AAGCACTACACTAACCACGAT 57.044 42.857 0.00 0.00 0.00 3.73
734 1810 2.028839 TGAAGAAATGGACGGCGTTCTA 60.029 45.455 20.55 8.83 30.24 2.10
778 1865 3.779183 AGCTCTTCAATCCTCAATCCTCA 59.221 43.478 0.00 0.00 0.00 3.86
779 1866 4.128643 CAGCTCTTCAATCCTCAATCCTC 58.871 47.826 0.00 0.00 0.00 3.71
780 1867 3.779183 TCAGCTCTTCAATCCTCAATCCT 59.221 43.478 0.00 0.00 0.00 3.24
781 1868 4.148128 TCAGCTCTTCAATCCTCAATCC 57.852 45.455 0.00 0.00 0.00 3.01
782 1869 5.124645 ACATCAGCTCTTCAATCCTCAATC 58.875 41.667 0.00 0.00 0.00 2.67
783 1870 5.113446 ACATCAGCTCTTCAATCCTCAAT 57.887 39.130 0.00 0.00 0.00 2.57
784 1871 4.564782 ACATCAGCTCTTCAATCCTCAA 57.435 40.909 0.00 0.00 0.00 3.02
785 1872 4.564782 AACATCAGCTCTTCAATCCTCA 57.435 40.909 0.00 0.00 0.00 3.86
788 1875 8.668510 TTCTTATAACATCAGCTCTTCAATCC 57.331 34.615 0.00 0.00 0.00 3.01
815 1908 4.039973 AGACACGTCTGGTCCATTTTCTTA 59.960 41.667 0.00 0.00 38.75 2.10
868 1989 1.453745 CCATGCATGGCTTACGGGT 60.454 57.895 31.95 0.00 41.75 5.28
1030 2207 4.021104 AGCTCTGTGTTGTAGCTTATGTGA 60.021 41.667 0.00 0.00 43.97 3.58
1059 2246 2.092592 TCTGTACGTAGCTGATCTGGGA 60.093 50.000 0.00 0.00 0.00 4.37
1060 2247 2.298610 TCTGTACGTAGCTGATCTGGG 58.701 52.381 0.00 0.00 0.00 4.45
1061 2248 4.998033 TCTATCTGTACGTAGCTGATCTGG 59.002 45.833 15.42 10.39 0.00 3.86
1062 2249 5.467063 TGTCTATCTGTACGTAGCTGATCTG 59.533 44.000 15.42 0.00 0.00 2.90
1063 2250 5.612351 TGTCTATCTGTACGTAGCTGATCT 58.388 41.667 15.42 3.74 0.00 2.75
1122 2315 2.183300 GAGCCGACGCCATGTGTA 59.817 61.111 0.00 0.00 34.57 2.90
1124 2317 4.758251 TGGAGCCGACGCCATGTG 62.758 66.667 0.00 0.00 41.32 3.21
1155 2350 2.230994 GAGCATGAGAGCCACCACGA 62.231 60.000 0.00 0.00 34.23 4.35
1156 2351 1.812922 GAGCATGAGAGCCACCACG 60.813 63.158 0.00 0.00 34.23 4.94
1267 2462 9.609346 GACTTTGAAATAAGCTACTTACCCATA 57.391 33.333 0.00 0.00 0.00 2.74
1327 2622 1.464997 CTTTTAGAAGGGCTGCACGAC 59.535 52.381 0.50 0.00 0.00 4.34
1496 2792 1.091771 CATCGGATCCGCAAGCTTGT 61.092 55.000 29.62 7.69 39.59 3.16
1548 2844 2.597510 GGGCAAAGGTTCGTGGCT 60.598 61.111 0.00 0.00 40.05 4.75
1638 2934 1.616628 AATCTTCTCCCAGGCCGGT 60.617 57.895 1.90 0.00 0.00 5.28
1658 2954 1.915489 TGATGCCACCCTTGTAGACAT 59.085 47.619 0.00 0.00 0.00 3.06
1724 3020 0.888736 GCACACAGGCACATACACCA 60.889 55.000 0.00 0.00 0.00 4.17
1725 3021 0.888736 TGCACACAGGCACATACACC 60.889 55.000 0.00 0.00 39.25 4.16
1726 3022 0.950836 TTGCACACAGGCACATACAC 59.049 50.000 0.00 0.00 44.86 2.90
1762 3062 2.268076 ACGCATGGAACCCTGCAAC 61.268 57.895 18.02 0.00 38.30 4.17
1805 3105 7.781693 AGGATAAAGTAATCATGACCAGCAATT 59.218 33.333 0.00 0.00 0.00 2.32
1828 3128 8.096621 TCCCATGTTGAATACATTAACTAGGA 57.903 34.615 0.00 0.00 45.19 2.94
1993 3293 0.175760 GACAAGCGTCTGCCCATCTA 59.824 55.000 0.00 0.00 44.31 1.98
2021 3321 1.324740 CCCATCCAGGTGGCACAATG 61.325 60.000 20.82 16.61 44.16 2.82
2233 3535 6.069963 GGATATTGGAGCTACATGAGGGTAAT 60.070 42.308 0.00 0.00 0.00 1.89
2365 3668 4.137543 GAGTCACCTGAAGAACAACCAAT 58.862 43.478 0.00 0.00 0.00 3.16
2430 3733 8.218338 ACAATGACTTCTAAAGCCATTATCTG 57.782 34.615 1.68 0.00 39.19 2.90
2472 3775 3.148279 GGATCCGTCTGAGCCCGT 61.148 66.667 0.00 0.00 44.13 5.28
2752 4415 4.528206 TCTTGTACATCCAAGCTCTTGAGA 59.472 41.667 10.94 7.11 42.93 3.27
2869 4532 6.017852 GGCTTACCTATTATGAGCTTGTCAAC 60.018 42.308 0.00 0.00 39.19 3.18
3003 4666 0.178912 AGTGGGTTCGAGTTAGGGGT 60.179 55.000 0.00 0.00 0.00 4.95
3112 4775 9.838975 GAATTTTCAAAGTTTTGGTCAAACAAT 57.161 25.926 4.89 0.00 46.55 2.71
3143 4806 9.495754 GCATTCTTGTAAGTTCATATGAGTTTC 57.504 33.333 5.39 3.12 0.00 2.78
3147 4810 9.844790 TTTTGCATTCTTGTAAGTTCATATGAG 57.155 29.630 5.39 0.00 0.00 2.90
3205 4868 8.376889 TGAACGTAAATGACATGTGCATATAT 57.623 30.769 1.15 0.00 0.00 0.86
3296 4960 5.125356 TCCTCACCTACATGTGCATTTATG 58.875 41.667 9.11 0.00 36.17 1.90
3513 5177 6.506500 AATTTGCACCTACTCTCAGATTTG 57.493 37.500 0.00 0.00 0.00 2.32
3526 5190 3.396685 TTATGCCCCTAATTTGCACCT 57.603 42.857 0.00 0.00 37.92 4.00
3563 5227 7.168219 GCCCTACCATAATCAAGACATATTCA 58.832 38.462 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.