Multiple sequence alignment - TraesCS4B01G246300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G246300 chr4B 100.000 2288 0 0 1 2288 510388383 510390670 0.000000e+00 4226.0
1 TraesCS4B01G246300 chr4B 96.909 453 14 0 1836 2288 527454744 527455196 0.000000e+00 760.0
2 TraesCS4B01G246300 chr4B 96.909 453 14 0 1836 2288 575008507 575008959 0.000000e+00 760.0
3 TraesCS4B01G246300 chr5B 94.547 1467 72 4 1 1461 384356181 384354717 0.000000e+00 2259.0
4 TraesCS4B01G246300 chr5B 97.351 453 12 0 1836 2288 610314878 610315330 0.000000e+00 771.0
5 TraesCS4B01G246300 chr5B 96.909 453 14 0 1836 2288 231063901 231064353 0.000000e+00 760.0
6 TraesCS4B01G246300 chr5B 96.909 453 14 0 1836 2288 337471067 337470615 0.000000e+00 760.0
7 TraesCS4B01G246300 chr5B 95.862 290 11 1 1530 1818 356266324 356266613 3.440000e-128 468.0
8 TraesCS4B01G246300 chr5B 87.887 388 24 4 1456 1839 384354669 384354301 3.490000e-118 435.0
9 TraesCS4B01G246300 chr7B 96.967 1286 34 5 555 1838 72303014 72301732 0.000000e+00 2154.0
10 TraesCS4B01G246300 chr6A 96.131 1318 49 2 146 1461 23448519 23447202 0.000000e+00 2150.0
11 TraesCS4B01G246300 chr6A 92.114 317 19 3 1457 1771 23447153 23446841 2.090000e-120 442.0
12 TraesCS4B01G246300 chr6A 100.000 29 0 0 1786 1814 23446845 23446817 1.000000e-03 54.7
13 TraesCS4B01G246300 chr2D 91.580 1449 98 7 1 1425 52067185 52068633 0.000000e+00 1978.0
14 TraesCS4B01G246300 chr2D 89.062 256 22 2 1586 1839 178264723 178264974 1.710000e-81 313.0
15 TraesCS4B01G246300 chr5A 90.790 1455 104 9 1 1425 622727157 622725703 0.000000e+00 1917.0
16 TraesCS4B01G246300 chr5A 90.230 348 26 7 1507 1849 704693631 704693975 4.480000e-122 448.0
17 TraesCS4B01G246300 chr6B 92.109 1356 96 7 1 1347 129396230 129397583 0.000000e+00 1901.0
18 TraesCS4B01G246300 chr6B 96.909 453 14 0 1836 2288 245580088 245579636 0.000000e+00 760.0
19 TraesCS4B01G246300 chr6B 96.909 453 14 0 1836 2288 457722912 457722460 0.000000e+00 760.0
20 TraesCS4B01G246300 chr6B 78.427 496 76 16 1348 1838 643248244 643248713 6.180000e-76 294.0
21 TraesCS4B01G246300 chr4A 90.506 1422 133 1 2 1421 91227553 91226132 0.000000e+00 1877.0
22 TraesCS4B01G246300 chr4A 95.000 80 4 0 1349 1428 255810546 255810467 2.390000e-25 126.0
23 TraesCS4B01G246300 chr3D 91.544 1360 113 1 1 1358 537328209 537326850 0.000000e+00 1873.0
24 TraesCS4B01G246300 chr2A 89.696 1446 138 7 2 1444 615517921 615516484 0.000000e+00 1834.0
25 TraesCS4B01G246300 chr1B 96.909 453 14 0 1836 2288 17996897 17997349 0.000000e+00 760.0
26 TraesCS4B01G246300 chr2B 96.703 455 13 1 1836 2288 694907196 694907650 0.000000e+00 756.0
27 TraesCS4B01G246300 chr2B 76.814 565 66 23 1296 1839 769546070 769546590 8.110000e-65 257.0
28 TraesCS4B01G246300 chr1A 92.428 383 20 3 1457 1838 163378588 163378214 2.590000e-149 538.0
29 TraesCS4B01G246300 chr7A 95.000 80 4 0 1349 1428 50903653 50903574 2.390000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G246300 chr4B 510388383 510390670 2287 False 4226.000000 4226 100.000000 1 2288 1 chr4B.!!$F1 2287
1 TraesCS4B01G246300 chr5B 384354301 384356181 1880 True 1347.000000 2259 91.217000 1 1839 2 chr5B.!!$R2 1838
2 TraesCS4B01G246300 chr7B 72301732 72303014 1282 True 2154.000000 2154 96.967000 555 1838 1 chr7B.!!$R1 1283
3 TraesCS4B01G246300 chr6A 23446817 23448519 1702 True 882.233333 2150 96.081667 146 1814 3 chr6A.!!$R1 1668
4 TraesCS4B01G246300 chr2D 52067185 52068633 1448 False 1978.000000 1978 91.580000 1 1425 1 chr2D.!!$F1 1424
5 TraesCS4B01G246300 chr5A 622725703 622727157 1454 True 1917.000000 1917 90.790000 1 1425 1 chr5A.!!$R1 1424
6 TraesCS4B01G246300 chr6B 129396230 129397583 1353 False 1901.000000 1901 92.109000 1 1347 1 chr6B.!!$F1 1346
7 TraesCS4B01G246300 chr4A 91226132 91227553 1421 True 1877.000000 1877 90.506000 2 1421 1 chr4A.!!$R1 1419
8 TraesCS4B01G246300 chr3D 537326850 537328209 1359 True 1873.000000 1873 91.544000 1 1358 1 chr3D.!!$R1 1357
9 TraesCS4B01G246300 chr2A 615516484 615517921 1437 True 1834.000000 1834 89.696000 2 1444 1 chr2A.!!$R1 1442
10 TraesCS4B01G246300 chr2B 769546070 769546590 520 False 257.000000 257 76.814000 1296 1839 1 chr2B.!!$F2 543

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
116 117 1.002624 TTGGGTCATGAAGGCCGAC 60.003 57.895 0.0 0.0 45.54 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1962 2111 0.032515 TAGAAGCCCTCCATGGTCGA 60.033 55.0 12.58 0.0 0.0 4.2 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 7.362401 GGTTCTCCAATATCAACATGATATGGC 60.362 40.741 12.30 5.35 46.26 4.40
74 75 2.030457 GCTTTATTCGGGTGTGTCATCG 59.970 50.000 0.00 0.00 0.00 3.84
87 88 2.866762 GTGTCATCGATAGTTGGGAAGC 59.133 50.000 0.00 0.00 36.47 3.86
116 117 1.002624 TTGGGTCATGAAGGCCGAC 60.003 57.895 0.00 0.00 45.54 4.79
323 326 1.966451 GACCTTGGGCGGTTGTGAG 60.966 63.158 0.00 0.00 37.42 3.51
345 354 3.699538 GTCAAACAGGAGAACCCAAAACT 59.300 43.478 0.00 0.00 37.41 2.66
552 561 7.149202 ACACATATTAGGGCTTCTATTCCAA 57.851 36.000 0.00 0.00 0.00 3.53
564 573 5.124617 GCTTCTATTCCAAAAGGACCTTCAG 59.875 44.000 7.34 3.04 0.00 3.02
777 789 9.283420 TGTTGTTGCAATTTATATAACATGTCG 57.717 29.630 0.59 0.00 32.07 4.35
945 957 8.919145 CCAACTACTCCTATAGAGAAGTTCAAT 58.081 37.037 5.50 0.00 46.50 2.57
1008 1020 3.831323 TGGTGTGTGGAAGATGAAATGT 58.169 40.909 0.00 0.00 0.00 2.71
1203 1215 7.062322 AGTATGTTATTCCTCCAAATGCATCA 58.938 34.615 0.00 0.00 0.00 3.07
1318 1340 6.311200 TCATGTTCATGTCTTTAGATGTGACG 59.689 38.462 11.73 0.00 33.81 4.35
1476 1592 8.574251 TGTGTAGTTCAAAAATATATGGCAGT 57.426 30.769 0.00 0.00 0.00 4.40
1524 1641 5.278873 TCTACCTCTCTGTACACCTCTCTA 58.721 45.833 0.00 0.00 0.00 2.43
1676 1806 4.102113 CCCAAGGTGGCAAGAAGG 57.898 61.111 0.00 0.00 35.79 3.46
1677 1807 1.153756 CCCAAGGTGGCAAGAAGGT 59.846 57.895 0.00 0.00 35.79 3.50
1678 1808 1.181098 CCCAAGGTGGCAAGAAGGTG 61.181 60.000 0.00 0.00 35.79 4.00
1679 1809 1.181098 CCAAGGTGGCAAGAAGGTGG 61.181 60.000 0.00 0.00 0.00 4.61
1680 1810 1.153756 AAGGTGGCAAGAAGGTGGG 59.846 57.895 0.00 0.00 0.00 4.61
1681 1811 2.991540 GGTGGCAAGAAGGTGGGC 60.992 66.667 0.00 0.00 0.00 5.36
1682 1812 2.116125 GTGGCAAGAAGGTGGGCT 59.884 61.111 0.00 0.00 0.00 5.19
1683 1813 1.531602 GTGGCAAGAAGGTGGGCTT 60.532 57.895 0.00 0.00 0.00 4.35
1684 1814 1.228552 TGGCAAGAAGGTGGGCTTC 60.229 57.895 0.00 0.00 0.00 3.86
1685 1815 1.228552 GGCAAGAAGGTGGGCTTCA 60.229 57.895 0.00 0.00 33.57 3.02
1686 1816 0.827507 GGCAAGAAGGTGGGCTTCAA 60.828 55.000 0.00 0.00 33.57 2.69
1687 1817 0.315251 GCAAGAAGGTGGGCTTCAAC 59.685 55.000 0.00 0.00 33.57 3.18
1688 1818 0.593128 CAAGAAGGTGGGCTTCAACG 59.407 55.000 0.00 0.00 38.34 4.10
1689 1819 1.172812 AAGAAGGTGGGCTTCAACGC 61.173 55.000 0.00 0.00 38.34 4.84
1839 1988 0.988832 TGTTTCCGAACAGGCCCTAT 59.011 50.000 0.00 0.00 40.71 2.57
1840 1989 2.093341 GTGTTTCCGAACAGGCCCTATA 60.093 50.000 0.00 0.00 45.86 1.31
1841 1990 2.775384 TGTTTCCGAACAGGCCCTATAT 59.225 45.455 0.00 0.00 40.71 0.86
1842 1991 3.968649 TGTTTCCGAACAGGCCCTATATA 59.031 43.478 0.00 0.00 40.71 0.86
1843 1992 4.595781 TGTTTCCGAACAGGCCCTATATAT 59.404 41.667 0.00 0.00 40.71 0.86
1844 1993 5.781306 TGTTTCCGAACAGGCCCTATATATA 59.219 40.000 0.00 0.00 40.71 0.86
1845 1994 5.927281 TTCCGAACAGGCCCTATATATAC 57.073 43.478 0.00 0.00 40.77 1.47
1846 1995 4.284178 TCCGAACAGGCCCTATATATACC 58.716 47.826 0.00 0.00 40.77 2.73
1847 1996 4.016851 TCCGAACAGGCCCTATATATACCT 60.017 45.833 0.00 0.00 40.77 3.08
1848 1997 5.194334 TCCGAACAGGCCCTATATATACCTA 59.806 44.000 0.00 0.00 40.77 3.08
1849 1998 6.075984 CCGAACAGGCCCTATATATACCTAT 58.924 44.000 0.00 0.00 0.00 2.57
1850 1999 6.015350 CCGAACAGGCCCTATATATACCTATG 60.015 46.154 0.00 0.00 0.00 2.23
1851 2000 6.550108 CGAACAGGCCCTATATATACCTATGT 59.450 42.308 0.00 0.00 0.00 2.29
1852 2001 7.722728 CGAACAGGCCCTATATATACCTATGTA 59.277 40.741 0.00 0.00 0.00 2.29
1853 2002 8.779096 AACAGGCCCTATATATACCTATGTAC 57.221 38.462 0.00 0.00 0.00 2.90
1854 2003 7.303713 ACAGGCCCTATATATACCTATGTACC 58.696 42.308 0.00 0.00 0.00 3.34
1855 2004 6.724905 CAGGCCCTATATATACCTATGTACCC 59.275 46.154 0.00 0.00 0.00 3.69
1856 2005 6.021672 GGCCCTATATATACCTATGTACCCC 58.978 48.000 0.00 0.00 0.00 4.95
1857 2006 5.713861 GCCCTATATATACCTATGTACCCCG 59.286 48.000 0.00 0.00 0.00 5.73
1858 2007 6.467775 GCCCTATATATACCTATGTACCCCGA 60.468 46.154 0.00 0.00 0.00 5.14
1859 2008 7.529555 CCCTATATATACCTATGTACCCCGAA 58.470 42.308 0.00 0.00 0.00 4.30
1860 2009 8.006564 CCCTATATATACCTATGTACCCCGAAA 58.993 40.741 0.00 0.00 0.00 3.46
1861 2010 9.425248 CCTATATATACCTATGTACCCCGAAAA 57.575 37.037 0.00 0.00 0.00 2.29
1863 2012 6.999705 ATATACCTATGTACCCCGAAAACA 57.000 37.500 0.00 0.00 0.00 2.83
1864 2013 5.899631 ATACCTATGTACCCCGAAAACAT 57.100 39.130 0.00 0.00 37.58 2.71
1865 2014 4.146745 ACCTATGTACCCCGAAAACATC 57.853 45.455 0.00 0.00 35.54 3.06
1876 2025 1.808411 GAAAACATCGAGGAGCACCA 58.192 50.000 3.06 0.00 38.94 4.17
1877 2026 1.464997 GAAAACATCGAGGAGCACCAC 59.535 52.381 3.06 0.00 38.94 4.16
1883 2032 4.771127 GAGGAGCACCACGAAACA 57.229 55.556 2.07 0.00 38.94 2.83
1884 2033 3.233355 GAGGAGCACCACGAAACAT 57.767 52.632 2.07 0.00 38.94 2.71
1885 2034 2.380084 GAGGAGCACCACGAAACATA 57.620 50.000 2.07 0.00 38.94 2.29
1886 2035 2.695359 GAGGAGCACCACGAAACATAA 58.305 47.619 2.07 0.00 38.94 1.90
1887 2036 3.270877 GAGGAGCACCACGAAACATAAT 58.729 45.455 2.07 0.00 38.94 1.28
1888 2037 3.686016 AGGAGCACCACGAAACATAATT 58.314 40.909 2.07 0.00 38.94 1.40
1889 2038 4.079253 AGGAGCACCACGAAACATAATTT 58.921 39.130 2.07 0.00 38.94 1.82
1890 2039 4.156008 AGGAGCACCACGAAACATAATTTC 59.844 41.667 2.07 0.00 38.94 2.17
1891 2040 4.412207 GAGCACCACGAAACATAATTTCC 58.588 43.478 0.00 0.00 0.00 3.13
1892 2041 3.823873 AGCACCACGAAACATAATTTCCA 59.176 39.130 0.00 0.00 0.00 3.53
1893 2042 3.917985 GCACCACGAAACATAATTTCCAC 59.082 43.478 0.00 0.00 0.00 4.02
1894 2043 4.481463 CACCACGAAACATAATTTCCACC 58.519 43.478 0.00 0.00 0.00 4.61
1895 2044 4.022762 CACCACGAAACATAATTTCCACCA 60.023 41.667 0.00 0.00 0.00 4.17
1896 2045 4.022676 ACCACGAAACATAATTTCCACCAC 60.023 41.667 0.00 0.00 0.00 4.16
1897 2046 4.481463 CACGAAACATAATTTCCACCACC 58.519 43.478 0.00 0.00 0.00 4.61
1898 2047 3.189702 ACGAAACATAATTTCCACCACCG 59.810 43.478 0.00 0.00 0.00 4.94
1899 2048 3.189702 CGAAACATAATTTCCACCACCGT 59.810 43.478 0.00 0.00 0.00 4.83
1900 2049 4.392445 CGAAACATAATTTCCACCACCGTA 59.608 41.667 0.00 0.00 0.00 4.02
1901 2050 5.106634 CGAAACATAATTTCCACCACCGTAA 60.107 40.000 0.00 0.00 0.00 3.18
1902 2051 5.632244 AACATAATTTCCACCACCGTAAC 57.368 39.130 0.00 0.00 0.00 2.50
1903 2052 4.011698 ACATAATTTCCACCACCGTAACC 58.988 43.478 0.00 0.00 0.00 2.85
1904 2053 2.963599 AATTTCCACCACCGTAACCT 57.036 45.000 0.00 0.00 0.00 3.50
1905 2054 2.963599 ATTTCCACCACCGTAACCTT 57.036 45.000 0.00 0.00 0.00 3.50
1906 2055 2.259266 TTTCCACCACCGTAACCTTC 57.741 50.000 0.00 0.00 0.00 3.46
1907 2056 1.426751 TTCCACCACCGTAACCTTCT 58.573 50.000 0.00 0.00 0.00 2.85
1908 2057 0.682852 TCCACCACCGTAACCTTCTG 59.317 55.000 0.00 0.00 0.00 3.02
1909 2058 0.395312 CCACCACCGTAACCTTCTGT 59.605 55.000 0.00 0.00 0.00 3.41
1910 2059 1.619827 CCACCACCGTAACCTTCTGTA 59.380 52.381 0.00 0.00 0.00 2.74
1911 2060 2.235402 CCACCACCGTAACCTTCTGTAT 59.765 50.000 0.00 0.00 0.00 2.29
1912 2061 3.518590 CACCACCGTAACCTTCTGTATC 58.481 50.000 0.00 0.00 0.00 2.24
1913 2062 2.498885 ACCACCGTAACCTTCTGTATCC 59.501 50.000 0.00 0.00 0.00 2.59
1914 2063 2.498481 CCACCGTAACCTTCTGTATCCA 59.502 50.000 0.00 0.00 0.00 3.41
1915 2064 3.518590 CACCGTAACCTTCTGTATCCAC 58.481 50.000 0.00 0.00 0.00 4.02
1916 2065 2.165030 ACCGTAACCTTCTGTATCCACG 59.835 50.000 0.00 0.00 0.00 4.94
1917 2066 2.424601 CCGTAACCTTCTGTATCCACGA 59.575 50.000 0.00 0.00 0.00 4.35
1918 2067 3.488721 CCGTAACCTTCTGTATCCACGAG 60.489 52.174 0.00 0.00 0.00 4.18
1919 2068 3.376234 CGTAACCTTCTGTATCCACGAGA 59.624 47.826 0.00 0.00 0.00 4.04
1920 2069 4.036498 CGTAACCTTCTGTATCCACGAGAT 59.964 45.833 0.00 0.00 39.15 2.75
1921 2070 4.657436 AACCTTCTGTATCCACGAGATC 57.343 45.455 0.00 0.00 36.33 2.75
1922 2071 3.904717 ACCTTCTGTATCCACGAGATCT 58.095 45.455 0.00 0.00 36.33 2.75
1923 2072 3.886505 ACCTTCTGTATCCACGAGATCTC 59.113 47.826 13.05 13.05 36.33 2.75
1924 2073 3.885901 CCTTCTGTATCCACGAGATCTCA 59.114 47.826 22.31 3.16 36.33 3.27
1925 2074 4.522405 CCTTCTGTATCCACGAGATCTCAT 59.478 45.833 22.31 4.15 36.33 2.90
1926 2075 5.335583 CCTTCTGTATCCACGAGATCTCATC 60.336 48.000 22.31 0.00 36.33 2.92
1927 2076 4.979335 TCTGTATCCACGAGATCTCATCT 58.021 43.478 22.31 1.22 43.70 2.90
1928 2077 5.380900 TCTGTATCCACGAGATCTCATCTT 58.619 41.667 22.31 5.61 40.38 2.40
1929 2078 5.240403 TCTGTATCCACGAGATCTCATCTTG 59.760 44.000 22.31 12.37 44.72 3.02
1930 2079 4.279420 TGTATCCACGAGATCTCATCTTGG 59.721 45.833 22.31 19.63 43.70 3.61
1931 2080 3.018423 TCCACGAGATCTCATCTTGGA 57.982 47.619 22.31 21.29 43.70 3.53
1932 2081 2.954989 TCCACGAGATCTCATCTTGGAG 59.045 50.000 22.31 6.04 43.70 3.86
1933 2082 2.545532 CCACGAGATCTCATCTTGGAGC 60.546 54.545 22.31 0.00 43.70 4.70
1934 2083 1.686052 ACGAGATCTCATCTTGGAGCC 59.314 52.381 22.31 0.00 43.70 4.70
1935 2084 1.962807 CGAGATCTCATCTTGGAGCCT 59.037 52.381 22.31 0.00 40.38 4.58
1936 2085 2.364970 CGAGATCTCATCTTGGAGCCTT 59.635 50.000 22.31 0.00 40.38 4.35
1937 2086 3.552684 CGAGATCTCATCTTGGAGCCTTC 60.553 52.174 22.31 0.00 40.38 3.46
1938 2087 2.364970 AGATCTCATCTTGGAGCCTTCG 59.635 50.000 0.00 0.00 35.76 3.79
1939 2088 0.176680 TCTCATCTTGGAGCCTTCGC 59.823 55.000 0.00 0.00 34.84 4.70
1940 2089 0.813210 CTCATCTTGGAGCCTTCGCC 60.813 60.000 0.00 0.00 34.57 5.54
1941 2090 2.176273 CATCTTGGAGCCTTCGCCG 61.176 63.158 0.00 0.00 34.60 6.46
1942 2091 2.359169 ATCTTGGAGCCTTCGCCGA 61.359 57.895 0.00 0.00 34.60 5.54
1943 2092 2.579684 ATCTTGGAGCCTTCGCCGAC 62.580 60.000 0.00 0.00 34.60 4.79
1944 2093 3.589654 CTTGGAGCCTTCGCCGACA 62.590 63.158 0.00 0.00 34.60 4.35
1945 2094 3.876589 TTGGAGCCTTCGCCGACAC 62.877 63.158 0.00 0.00 34.60 3.67
1946 2095 4.070552 GGAGCCTTCGCCGACACT 62.071 66.667 0.00 0.00 34.57 3.55
1947 2096 2.507324 GAGCCTTCGCCGACACTC 60.507 66.667 0.00 0.00 34.57 3.51
1948 2097 2.992114 AGCCTTCGCCGACACTCT 60.992 61.111 0.00 0.00 34.57 3.24
1949 2098 2.811317 GCCTTCGCCGACACTCTG 60.811 66.667 0.00 0.00 0.00 3.35
1950 2099 2.811317 CCTTCGCCGACACTCTGC 60.811 66.667 0.00 0.00 0.00 4.26
1951 2100 2.811317 CTTCGCCGACACTCTGCC 60.811 66.667 0.00 0.00 0.00 4.85
1952 2101 4.717629 TTCGCCGACACTCTGCCG 62.718 66.667 0.00 0.00 0.00 5.69
1955 2104 4.803426 GCCGACACTCTGCCGGAG 62.803 72.222 5.05 0.00 45.58 4.63
1968 2117 2.762459 CGGAGGGGGAATCGACCA 60.762 66.667 0.00 0.00 0.00 4.02
1969 2118 2.140792 CGGAGGGGGAATCGACCAT 61.141 63.158 0.00 0.00 0.00 3.55
1970 2119 1.451936 GGAGGGGGAATCGACCATG 59.548 63.158 0.00 0.00 0.00 3.66
1971 2120 1.451936 GAGGGGGAATCGACCATGG 59.548 63.158 11.19 11.19 0.00 3.66
1972 2121 1.004230 AGGGGGAATCGACCATGGA 59.996 57.895 21.47 0.00 0.00 3.41
1973 2122 1.056700 AGGGGGAATCGACCATGGAG 61.057 60.000 21.47 12.28 0.00 3.86
1974 2123 1.451936 GGGGAATCGACCATGGAGG 59.548 63.158 21.47 9.72 45.67 4.30
1975 2124 1.451936 GGGAATCGACCATGGAGGG 59.548 63.158 21.47 6.94 43.89 4.30
1976 2125 1.227973 GGAATCGACCATGGAGGGC 60.228 63.158 21.47 3.64 44.64 5.19
1977 2126 1.700042 GGAATCGACCATGGAGGGCT 61.700 60.000 21.47 0.00 46.64 5.19
1978 2127 0.181350 GAATCGACCATGGAGGGCTT 59.819 55.000 21.47 4.51 46.64 4.35
1979 2128 0.181350 AATCGACCATGGAGGGCTTC 59.819 55.000 21.47 2.84 46.64 3.86
1980 2129 0.692419 ATCGACCATGGAGGGCTTCT 60.692 55.000 21.47 0.00 46.64 2.85
1981 2130 0.032515 TCGACCATGGAGGGCTTCTA 60.033 55.000 21.47 0.00 46.64 2.10
1982 2131 0.105039 CGACCATGGAGGGCTTCTAC 59.895 60.000 21.47 0.00 46.64 2.59
1983 2132 1.204146 GACCATGGAGGGCTTCTACA 58.796 55.000 21.47 0.00 44.70 2.74
1985 2134 1.771255 ACCATGGAGGGCTTCTACATC 59.229 52.381 21.47 0.00 43.41 3.06
1986 2135 1.770658 CCATGGAGGGCTTCTACATCA 59.229 52.381 5.56 0.00 43.41 3.07
1987 2136 2.173356 CCATGGAGGGCTTCTACATCAA 59.827 50.000 5.56 0.00 43.41 2.57
1988 2137 3.209410 CATGGAGGGCTTCTACATCAAC 58.791 50.000 0.00 0.00 43.41 3.18
1989 2138 2.265367 TGGAGGGCTTCTACATCAACA 58.735 47.619 0.00 0.00 29.60 3.33
1990 2139 2.846206 TGGAGGGCTTCTACATCAACAT 59.154 45.455 0.00 0.00 29.60 2.71
1991 2140 3.118261 TGGAGGGCTTCTACATCAACATC 60.118 47.826 0.00 0.00 29.60 3.06
1992 2141 3.471680 GAGGGCTTCTACATCAACATCC 58.528 50.000 0.00 0.00 0.00 3.51
1993 2142 3.118531 AGGGCTTCTACATCAACATCCT 58.881 45.455 0.00 0.00 0.00 3.24
1994 2143 3.525199 AGGGCTTCTACATCAACATCCTT 59.475 43.478 0.00 0.00 0.00 3.36
1995 2144 3.629398 GGGCTTCTACATCAACATCCTTG 59.371 47.826 0.00 0.00 0.00 3.61
1996 2145 3.065925 GGCTTCTACATCAACATCCTTGC 59.934 47.826 0.00 0.00 0.00 4.01
1997 2146 3.065925 GCTTCTACATCAACATCCTTGCC 59.934 47.826 0.00 0.00 0.00 4.52
1998 2147 3.281727 TCTACATCAACATCCTTGCCC 57.718 47.619 0.00 0.00 0.00 5.36
1999 2148 2.092429 TCTACATCAACATCCTTGCCCC 60.092 50.000 0.00 0.00 0.00 5.80
2000 2149 0.706433 ACATCAACATCCTTGCCCCT 59.294 50.000 0.00 0.00 0.00 4.79
2001 2150 1.341383 ACATCAACATCCTTGCCCCTC 60.341 52.381 0.00 0.00 0.00 4.30
2002 2151 0.259938 ATCAACATCCTTGCCCCTCC 59.740 55.000 0.00 0.00 0.00 4.30
2003 2152 1.750399 CAACATCCTTGCCCCTCCG 60.750 63.158 0.00 0.00 0.00 4.63
2004 2153 1.923395 AACATCCTTGCCCCTCCGA 60.923 57.895 0.00 0.00 0.00 4.55
2005 2154 1.281925 AACATCCTTGCCCCTCCGAT 61.282 55.000 0.00 0.00 0.00 4.18
2006 2155 1.228063 CATCCTTGCCCCTCCGATG 60.228 63.158 0.00 0.00 0.00 3.84
2007 2156 1.384502 ATCCTTGCCCCTCCGATGA 60.385 57.895 0.00 0.00 0.00 2.92
2008 2157 1.414061 ATCCTTGCCCCTCCGATGAG 61.414 60.000 0.00 0.00 38.42 2.90
2009 2158 2.370445 CCTTGCCCCTCCGATGAGT 61.370 63.158 0.00 0.00 36.86 3.41
2010 2159 1.604378 CTTGCCCCTCCGATGAGTT 59.396 57.895 0.00 0.00 36.86 3.01
2011 2160 0.745845 CTTGCCCCTCCGATGAGTTG 60.746 60.000 0.00 0.00 36.86 3.16
2012 2161 1.488705 TTGCCCCTCCGATGAGTTGT 61.489 55.000 0.00 0.00 36.86 3.32
2013 2162 1.450312 GCCCCTCCGATGAGTTGTG 60.450 63.158 0.00 0.00 36.86 3.33
2014 2163 1.899437 GCCCCTCCGATGAGTTGTGA 61.899 60.000 0.00 0.00 36.86 3.58
2015 2164 0.176680 CCCCTCCGATGAGTTGTGAG 59.823 60.000 0.00 0.00 36.86 3.51
2016 2165 0.898320 CCCTCCGATGAGTTGTGAGT 59.102 55.000 0.00 0.00 36.86 3.41
2017 2166 2.100197 CCCTCCGATGAGTTGTGAGTA 58.900 52.381 0.00 0.00 36.86 2.59
2018 2167 2.099921 CCCTCCGATGAGTTGTGAGTAG 59.900 54.545 0.00 0.00 36.86 2.57
2019 2168 2.755655 CCTCCGATGAGTTGTGAGTAGT 59.244 50.000 0.00 0.00 36.86 2.73
2020 2169 3.193691 CCTCCGATGAGTTGTGAGTAGTT 59.806 47.826 0.00 0.00 36.86 2.24
2021 2170 4.322049 CCTCCGATGAGTTGTGAGTAGTTT 60.322 45.833 0.00 0.00 36.86 2.66
2022 2171 5.105877 CCTCCGATGAGTTGTGAGTAGTTTA 60.106 44.000 0.00 0.00 36.86 2.01
2023 2172 5.706916 TCCGATGAGTTGTGAGTAGTTTAC 58.293 41.667 0.00 0.00 0.00 2.01
2024 2173 4.863131 CCGATGAGTTGTGAGTAGTTTACC 59.137 45.833 0.00 0.00 0.00 2.85
2025 2174 5.466819 CGATGAGTTGTGAGTAGTTTACCA 58.533 41.667 0.00 0.00 0.00 3.25
2026 2175 6.100004 CGATGAGTTGTGAGTAGTTTACCAT 58.900 40.000 0.00 0.00 0.00 3.55
2027 2176 7.255569 CGATGAGTTGTGAGTAGTTTACCATA 58.744 38.462 0.00 0.00 0.00 2.74
2028 2177 7.432545 CGATGAGTTGTGAGTAGTTTACCATAG 59.567 40.741 0.00 0.00 0.00 2.23
2029 2178 7.770366 TGAGTTGTGAGTAGTTTACCATAGA 57.230 36.000 0.00 0.00 0.00 1.98
2030 2179 7.600065 TGAGTTGTGAGTAGTTTACCATAGAC 58.400 38.462 0.00 0.00 0.00 2.59
2031 2180 6.932947 AGTTGTGAGTAGTTTACCATAGACC 58.067 40.000 0.00 0.00 0.00 3.85
2032 2181 6.724905 AGTTGTGAGTAGTTTACCATAGACCT 59.275 38.462 0.00 0.00 0.00 3.85
2033 2182 7.892241 AGTTGTGAGTAGTTTACCATAGACCTA 59.108 37.037 0.00 0.00 0.00 3.08
2034 2183 7.636150 TGTGAGTAGTTTACCATAGACCTAC 57.364 40.000 0.00 0.00 0.00 3.18
2035 2184 6.317140 TGTGAGTAGTTTACCATAGACCTACG 59.683 42.308 0.00 0.00 0.00 3.51
2036 2185 5.824624 TGAGTAGTTTACCATAGACCTACGG 59.175 44.000 0.00 0.00 0.00 4.02
2037 2186 5.136105 AGTAGTTTACCATAGACCTACGGG 58.864 45.833 0.00 0.00 38.88 5.28
2052 2201 4.525874 ACCTACGGGTCCATAGTTATTAGC 59.474 45.833 0.00 0.00 43.38 3.09
2053 2202 4.771054 CCTACGGGTCCATAGTTATTAGCT 59.229 45.833 0.00 0.00 0.00 3.32
2054 2203 5.948162 CCTACGGGTCCATAGTTATTAGCTA 59.052 44.000 0.00 0.00 0.00 3.32
2055 2204 5.979288 ACGGGTCCATAGTTATTAGCTAG 57.021 43.478 0.00 0.00 0.00 3.42
2056 2205 5.638133 ACGGGTCCATAGTTATTAGCTAGA 58.362 41.667 0.00 0.00 0.00 2.43
2057 2206 6.254522 ACGGGTCCATAGTTATTAGCTAGAT 58.745 40.000 0.00 0.00 0.00 1.98
2058 2207 6.153000 ACGGGTCCATAGTTATTAGCTAGATG 59.847 42.308 0.00 0.00 0.00 2.90
2059 2208 6.405953 CGGGTCCATAGTTATTAGCTAGATGG 60.406 46.154 0.00 2.62 0.00 3.51
2060 2209 6.668283 GGGTCCATAGTTATTAGCTAGATGGA 59.332 42.308 7.56 7.56 33.77 3.41
2061 2210 7.345914 GGGTCCATAGTTATTAGCTAGATGGAT 59.654 40.741 12.50 2.70 37.89 3.41
2062 2211 8.763601 GGTCCATAGTTATTAGCTAGATGGATT 58.236 37.037 12.50 0.00 37.89 3.01
2063 2212 9.810545 GTCCATAGTTATTAGCTAGATGGATTC 57.189 37.037 12.50 1.98 37.89 2.52
2064 2213 9.775539 TCCATAGTTATTAGCTAGATGGATTCT 57.224 33.333 7.56 0.00 38.57 2.40
2074 2223 9.965902 TTAGCTAGATGGATTCTTTTCTCTTTT 57.034 29.630 0.00 0.00 35.79 2.27
2075 2224 8.876303 AGCTAGATGGATTCTTTTCTCTTTTT 57.124 30.769 0.00 0.00 35.79 1.94
2076 2225 8.738106 AGCTAGATGGATTCTTTTCTCTTTTTG 58.262 33.333 0.00 0.00 35.79 2.44
2077 2226 7.972832 GCTAGATGGATTCTTTTCTCTTTTTGG 59.027 37.037 0.00 0.00 35.79 3.28
2078 2227 9.236006 CTAGATGGATTCTTTTCTCTTTTTGGA 57.764 33.333 0.00 0.00 35.79 3.53
2079 2228 8.661752 AGATGGATTCTTTTCTCTTTTTGGAT 57.338 30.769 0.00 0.00 0.00 3.41
2080 2229 8.747471 AGATGGATTCTTTTCTCTTTTTGGATC 58.253 33.333 0.00 0.00 0.00 3.36
2081 2230 8.661752 ATGGATTCTTTTCTCTTTTTGGATCT 57.338 30.769 0.00 0.00 0.00 2.75
2082 2231 8.115490 TGGATTCTTTTCTCTTTTTGGATCTC 57.885 34.615 0.00 0.00 0.00 2.75
2083 2232 7.725397 TGGATTCTTTTCTCTTTTTGGATCTCA 59.275 33.333 0.00 0.00 0.00 3.27
2084 2233 8.579863 GGATTCTTTTCTCTTTTTGGATCTCAA 58.420 33.333 0.00 0.00 0.00 3.02
2088 2237 9.573166 TCTTTTCTCTTTTTGGATCTCAATACA 57.427 29.630 0.00 0.00 34.98 2.29
2092 2241 8.868522 TCTCTTTTTGGATCTCAATACAATGT 57.131 30.769 0.00 0.00 35.60 2.71
2093 2242 9.300681 TCTCTTTTTGGATCTCAATACAATGTT 57.699 29.630 0.00 0.00 35.60 2.71
2094 2243 9.565213 CTCTTTTTGGATCTCAATACAATGTTC 57.435 33.333 0.00 0.00 35.60 3.18
2095 2244 9.300681 TCTTTTTGGATCTCAATACAATGTTCT 57.699 29.630 0.00 0.00 35.60 3.01
2096 2245 9.565213 CTTTTTGGATCTCAATACAATGTTCTC 57.435 33.333 0.00 0.00 35.60 2.87
2097 2246 7.630242 TTTGGATCTCAATACAATGTTCTCC 57.370 36.000 0.00 0.00 35.60 3.71
2098 2247 5.684704 TGGATCTCAATACAATGTTCTCCC 58.315 41.667 0.00 0.00 0.00 4.30
2099 2248 5.066593 GGATCTCAATACAATGTTCTCCCC 58.933 45.833 0.00 0.00 0.00 4.81
2100 2249 4.503714 TCTCAATACAATGTTCTCCCCC 57.496 45.455 0.00 0.00 0.00 5.40
2101 2250 4.111577 TCTCAATACAATGTTCTCCCCCT 58.888 43.478 0.00 0.00 0.00 4.79
2102 2251 4.164221 TCTCAATACAATGTTCTCCCCCTC 59.836 45.833 0.00 0.00 0.00 4.30
2103 2252 4.111577 TCAATACAATGTTCTCCCCCTCT 58.888 43.478 0.00 0.00 0.00 3.69
2104 2253 4.164221 TCAATACAATGTTCTCCCCCTCTC 59.836 45.833 0.00 0.00 0.00 3.20
2105 2254 2.350863 ACAATGTTCTCCCCCTCTCT 57.649 50.000 0.00 0.00 0.00 3.10
2106 2255 2.637165 ACAATGTTCTCCCCCTCTCTT 58.363 47.619 0.00 0.00 0.00 2.85
2107 2256 2.307098 ACAATGTTCTCCCCCTCTCTTG 59.693 50.000 0.00 0.00 0.00 3.02
2108 2257 2.307098 CAATGTTCTCCCCCTCTCTTGT 59.693 50.000 0.00 0.00 0.00 3.16
2109 2258 1.352083 TGTTCTCCCCCTCTCTTGTG 58.648 55.000 0.00 0.00 0.00 3.33
2110 2259 1.132849 TGTTCTCCCCCTCTCTTGTGA 60.133 52.381 0.00 0.00 0.00 3.58
2111 2260 1.978580 GTTCTCCCCCTCTCTTGTGAA 59.021 52.381 0.00 0.00 0.00 3.18
2112 2261 1.944177 TCTCCCCCTCTCTTGTGAAG 58.056 55.000 0.00 0.00 0.00 3.02
2113 2262 1.433199 TCTCCCCCTCTCTTGTGAAGA 59.567 52.381 0.00 0.00 35.87 2.87
2114 2263 2.045047 TCTCCCCCTCTCTTGTGAAGAT 59.955 50.000 0.00 0.00 36.82 2.40
2115 2264 2.433970 CTCCCCCTCTCTTGTGAAGATC 59.566 54.545 0.00 0.00 36.82 2.75
2116 2265 2.045047 TCCCCCTCTCTTGTGAAGATCT 59.955 50.000 0.00 0.00 36.82 2.75
2117 2266 3.272285 TCCCCCTCTCTTGTGAAGATCTA 59.728 47.826 0.00 0.00 36.82 1.98
2118 2267 4.078336 TCCCCCTCTCTTGTGAAGATCTAT 60.078 45.833 0.00 0.00 36.82 1.98
2119 2268 4.657969 CCCCCTCTCTTGTGAAGATCTATT 59.342 45.833 0.00 0.00 36.82 1.73
2120 2269 5.131809 CCCCCTCTCTTGTGAAGATCTATTT 59.868 44.000 0.00 0.00 36.82 1.40
2121 2270 6.054295 CCCCTCTCTTGTGAAGATCTATTTG 58.946 44.000 0.00 0.00 36.82 2.32
2122 2271 6.126940 CCCCTCTCTTGTGAAGATCTATTTGA 60.127 42.308 0.00 0.00 36.82 2.69
2123 2272 7.419981 CCCCTCTCTTGTGAAGATCTATTTGAT 60.420 40.741 0.00 0.00 36.82 2.57
2124 2273 7.441760 CCCTCTCTTGTGAAGATCTATTTGATG 59.558 40.741 0.00 0.00 36.82 3.07
2125 2274 7.986320 CCTCTCTTGTGAAGATCTATTTGATGT 59.014 37.037 0.00 0.00 36.82 3.06
2139 2288 9.941664 ATCTATTTGATGTAATCTCTTTTTGCG 57.058 29.630 0.00 0.00 45.81 4.85
2140 2289 8.397906 TCTATTTGATGTAATCTCTTTTTGCGG 58.602 33.333 0.00 0.00 45.81 5.69
2141 2290 5.957842 TTGATGTAATCTCTTTTTGCGGT 57.042 34.783 0.00 0.00 45.81 5.68
2142 2291 5.295431 TGATGTAATCTCTTTTTGCGGTG 57.705 39.130 0.00 0.00 45.81 4.94
2143 2292 4.759693 TGATGTAATCTCTTTTTGCGGTGT 59.240 37.500 0.00 0.00 45.81 4.16
2144 2293 4.481930 TGTAATCTCTTTTTGCGGTGTG 57.518 40.909 0.00 0.00 0.00 3.82
2145 2294 3.880490 TGTAATCTCTTTTTGCGGTGTGT 59.120 39.130 0.00 0.00 0.00 3.72
2146 2295 4.336993 TGTAATCTCTTTTTGCGGTGTGTT 59.663 37.500 0.00 0.00 0.00 3.32
2147 2296 4.385358 AATCTCTTTTTGCGGTGTGTTT 57.615 36.364 0.00 0.00 0.00 2.83
2148 2297 3.143807 TCTCTTTTTGCGGTGTGTTTG 57.856 42.857 0.00 0.00 0.00 2.93
2149 2298 2.490115 TCTCTTTTTGCGGTGTGTTTGT 59.510 40.909 0.00 0.00 0.00 2.83
2150 2299 2.851824 CTCTTTTTGCGGTGTGTTTGTC 59.148 45.455 0.00 0.00 0.00 3.18
2151 2300 1.581602 CTTTTTGCGGTGTGTTTGTCG 59.418 47.619 0.00 0.00 0.00 4.35
2152 2301 0.803117 TTTTGCGGTGTGTTTGTCGA 59.197 45.000 0.00 0.00 0.00 4.20
2153 2302 0.375454 TTTGCGGTGTGTTTGTCGAG 59.625 50.000 0.00 0.00 0.00 4.04
2154 2303 0.460459 TTGCGGTGTGTTTGTCGAGA 60.460 50.000 0.00 0.00 0.00 4.04
2155 2304 0.249699 TGCGGTGTGTTTGTCGAGAT 60.250 50.000 0.00 0.00 0.00 2.75
2156 2305 0.438830 GCGGTGTGTTTGTCGAGATC 59.561 55.000 0.00 0.00 0.00 2.75
2157 2306 1.068474 CGGTGTGTTTGTCGAGATCC 58.932 55.000 0.00 0.00 0.00 3.36
2158 2307 1.068474 GGTGTGTTTGTCGAGATCCG 58.932 55.000 0.00 0.00 40.25 4.18
2159 2308 1.336517 GGTGTGTTTGTCGAGATCCGA 60.337 52.381 2.65 2.65 46.35 4.55
2169 2318 3.097877 TCGAGATCCGATGAATTGTGG 57.902 47.619 2.65 0.00 43.23 4.17
2170 2319 2.138320 CGAGATCCGATGAATTGTGGG 58.862 52.381 0.00 0.00 41.76 4.61
2171 2320 2.483714 CGAGATCCGATGAATTGTGGGT 60.484 50.000 0.00 0.00 41.76 4.51
2172 2321 3.545703 GAGATCCGATGAATTGTGGGTT 58.454 45.455 0.00 0.00 0.00 4.11
2173 2322 3.947834 GAGATCCGATGAATTGTGGGTTT 59.052 43.478 0.00 0.00 0.00 3.27
2174 2323 5.110814 AGATCCGATGAATTGTGGGTTTA 57.889 39.130 0.00 0.00 0.00 2.01
2175 2324 5.694995 AGATCCGATGAATTGTGGGTTTAT 58.305 37.500 0.00 0.00 0.00 1.40
2176 2325 5.532406 AGATCCGATGAATTGTGGGTTTATG 59.468 40.000 0.00 0.00 0.00 1.90
2177 2326 4.849518 TCCGATGAATTGTGGGTTTATGA 58.150 39.130 0.00 0.00 0.00 2.15
2178 2327 5.445069 TCCGATGAATTGTGGGTTTATGAT 58.555 37.500 0.00 0.00 0.00 2.45
2179 2328 5.530915 TCCGATGAATTGTGGGTTTATGATC 59.469 40.000 0.00 0.00 0.00 2.92
2180 2329 5.299028 CCGATGAATTGTGGGTTTATGATCA 59.701 40.000 0.00 0.00 0.00 2.92
2181 2330 6.183360 CCGATGAATTGTGGGTTTATGATCAA 60.183 38.462 0.00 0.00 0.00 2.57
2182 2331 6.914215 CGATGAATTGTGGGTTTATGATCAAG 59.086 38.462 0.00 0.00 0.00 3.02
2183 2332 7.415541 CGATGAATTGTGGGTTTATGATCAAGT 60.416 37.037 0.00 0.00 0.00 3.16
2184 2333 7.537596 TGAATTGTGGGTTTATGATCAAGTT 57.462 32.000 0.00 0.00 0.00 2.66
2185 2334 7.961351 TGAATTGTGGGTTTATGATCAAGTTT 58.039 30.769 0.00 0.00 0.00 2.66
2186 2335 9.083422 TGAATTGTGGGTTTATGATCAAGTTTA 57.917 29.630 0.00 0.00 0.00 2.01
2189 2338 8.877864 TTGTGGGTTTATGATCAAGTTTATCT 57.122 30.769 0.00 0.00 0.00 1.98
2190 2339 9.967451 TTGTGGGTTTATGATCAAGTTTATCTA 57.033 29.630 0.00 0.00 0.00 1.98
2250 2399 8.565896 TGTATGATTGAGTTATCTTTGCAAGT 57.434 30.769 0.00 0.00 0.00 3.16
2251 2400 8.668353 TGTATGATTGAGTTATCTTTGCAAGTC 58.332 33.333 0.00 0.00 0.00 3.01
2252 2401 7.934855 ATGATTGAGTTATCTTTGCAAGTCT 57.065 32.000 0.00 0.00 0.00 3.24
2253 2402 7.369803 TGATTGAGTTATCTTTGCAAGTCTC 57.630 36.000 0.00 3.89 0.00 3.36
2254 2403 7.164122 TGATTGAGTTATCTTTGCAAGTCTCT 58.836 34.615 0.00 0.00 0.00 3.10
2255 2404 7.663081 TGATTGAGTTATCTTTGCAAGTCTCTT 59.337 33.333 0.00 0.00 0.00 2.85
2256 2405 7.426929 TTGAGTTATCTTTGCAAGTCTCTTC 57.573 36.000 0.00 0.00 0.00 2.87
2257 2406 5.635280 TGAGTTATCTTTGCAAGTCTCTTCG 59.365 40.000 0.00 0.00 0.00 3.79
2258 2407 5.784177 AGTTATCTTTGCAAGTCTCTTCGA 58.216 37.500 0.00 0.00 0.00 3.71
2259 2408 6.223852 AGTTATCTTTGCAAGTCTCTTCGAA 58.776 36.000 0.00 0.00 0.00 3.71
2260 2409 6.876257 AGTTATCTTTGCAAGTCTCTTCGAAT 59.124 34.615 0.00 0.00 0.00 3.34
2261 2410 7.389053 AGTTATCTTTGCAAGTCTCTTCGAATT 59.611 33.333 0.00 0.00 0.00 2.17
2262 2411 8.656849 GTTATCTTTGCAAGTCTCTTCGAATTA 58.343 33.333 0.00 0.00 0.00 1.40
2263 2412 7.856145 ATCTTTGCAAGTCTCTTCGAATTAT 57.144 32.000 0.00 0.00 0.00 1.28
2264 2413 7.295952 TCTTTGCAAGTCTCTTCGAATTATC 57.704 36.000 0.00 0.00 0.00 1.75
2265 2414 6.873605 TCTTTGCAAGTCTCTTCGAATTATCA 59.126 34.615 0.00 0.00 0.00 2.15
2266 2415 6.653273 TTGCAAGTCTCTTCGAATTATCAG 57.347 37.500 0.00 0.00 0.00 2.90
2267 2416 5.724328 TGCAAGTCTCTTCGAATTATCAGT 58.276 37.500 0.00 0.00 0.00 3.41
2268 2417 6.166279 TGCAAGTCTCTTCGAATTATCAGTT 58.834 36.000 0.00 0.00 0.00 3.16
2269 2418 6.650807 TGCAAGTCTCTTCGAATTATCAGTTT 59.349 34.615 0.00 0.00 0.00 2.66
2270 2419 6.958193 GCAAGTCTCTTCGAATTATCAGTTTG 59.042 38.462 0.00 0.00 0.00 2.93
2271 2420 7.459486 CAAGTCTCTTCGAATTATCAGTTTGG 58.541 38.462 0.00 0.00 0.00 3.28
2272 2421 6.702329 AGTCTCTTCGAATTATCAGTTTGGT 58.298 36.000 0.00 0.00 0.00 3.67
2273 2422 7.162082 AGTCTCTTCGAATTATCAGTTTGGTT 58.838 34.615 0.00 0.00 0.00 3.67
2274 2423 7.661847 AGTCTCTTCGAATTATCAGTTTGGTTT 59.338 33.333 0.00 0.00 0.00 3.27
2275 2424 7.746475 GTCTCTTCGAATTATCAGTTTGGTTTG 59.254 37.037 0.00 0.00 0.00 2.93
2276 2425 6.908825 TCTTCGAATTATCAGTTTGGTTTGG 58.091 36.000 0.00 0.00 0.00 3.28
2277 2426 5.054390 TCGAATTATCAGTTTGGTTTGGC 57.946 39.130 0.00 0.00 0.00 4.52
2278 2427 4.082463 TCGAATTATCAGTTTGGTTTGGCC 60.082 41.667 0.00 0.00 37.90 5.36
2279 2428 4.082245 CGAATTATCAGTTTGGTTTGGCCT 60.082 41.667 3.32 0.00 38.35 5.19
2280 2429 5.124776 CGAATTATCAGTTTGGTTTGGCCTA 59.875 40.000 3.32 0.00 38.35 3.93
2281 2430 5.914898 ATTATCAGTTTGGTTTGGCCTAC 57.085 39.130 3.32 1.58 38.35 3.18
2282 2431 3.525800 ATCAGTTTGGTTTGGCCTACT 57.474 42.857 3.32 0.00 38.35 2.57
2283 2432 4.650972 ATCAGTTTGGTTTGGCCTACTA 57.349 40.909 3.32 0.00 38.35 1.82
2284 2433 4.015872 TCAGTTTGGTTTGGCCTACTAG 57.984 45.455 3.32 0.00 38.35 2.57
2285 2434 3.649023 TCAGTTTGGTTTGGCCTACTAGA 59.351 43.478 3.32 0.00 38.35 2.43
2286 2435 4.288626 TCAGTTTGGTTTGGCCTACTAGAT 59.711 41.667 3.32 0.00 38.35 1.98
2287 2436 5.010282 CAGTTTGGTTTGGCCTACTAGATT 58.990 41.667 3.32 0.00 38.35 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
49 50 2.091541 ACACACCCGAATAAAGCATGG 58.908 47.619 0.00 0.00 0.00 3.66
74 75 4.454728 TTTGCAATGCTTCCCAACTATC 57.545 40.909 6.82 0.00 0.00 2.08
87 88 3.992643 TCATGACCCAACTTTTGCAATG 58.007 40.909 0.00 0.00 0.00 2.82
280 283 5.348179 CACAAGAACATAGCAAGAGACTCAG 59.652 44.000 5.02 0.00 0.00 3.35
323 326 3.699538 AGTTTTGGGTTCTCCTGTTTGAC 59.300 43.478 0.00 0.00 36.20 3.18
345 354 5.069318 TGTATCTGCTCCATGTTTGAAACA 58.931 37.500 13.66 13.66 46.94 2.83
527 536 7.149202 TGGAATAGAAGCCCTAATATGTGTT 57.851 36.000 0.00 0.00 0.00 3.32
564 573 6.183360 CCGGTTCTTCCAATGTACCTTATTTC 60.183 42.308 0.00 0.00 35.57 2.17
777 789 6.531240 ACAACAAACATGATTGTGAGTTGAAC 59.469 34.615 20.49 0.00 45.19 3.18
1126 1138 1.685765 CCGGATCCCTCTCACACCA 60.686 63.158 6.06 0.00 0.00 4.17
1203 1215 0.673644 CCGCCGGTGTTGAAGAATCT 60.674 55.000 15.14 0.00 0.00 2.40
1421 1484 4.143347 GCATGTATTTTTGAACTTGCCACG 60.143 41.667 0.00 0.00 39.54 4.94
1474 1590 3.255397 AGAGCTGGGCCTGCAACT 61.255 61.111 32.94 26.85 0.00 3.16
1476 1592 2.932194 AGAGAGCTGGGCCTGCAA 60.932 61.111 32.94 0.00 0.00 4.08
1524 1641 9.911788 AGATAATTTGTGTGATTTCTCCAGTAT 57.088 29.630 0.00 0.00 0.00 2.12
1645 1775 2.819984 CTTGGGCCGGCTAGAAGCAA 62.820 60.000 28.56 0.00 44.75 3.91
1680 1810 3.741476 CAGCTGGGGCGTTGAAGC 61.741 66.667 5.57 0.00 44.37 3.86
1681 1811 3.058160 CCAGCTGGGGCGTTGAAG 61.058 66.667 26.14 0.00 44.37 3.02
1839 1988 8.669055 ATGTTTTCGGGGTACATAGGTATATA 57.331 34.615 0.00 0.00 31.11 0.86
1840 1989 6.999705 TGTTTTCGGGGTACATAGGTATAT 57.000 37.500 0.00 0.00 0.00 0.86
1841 1990 6.294675 CGATGTTTTCGGGGTACATAGGTATA 60.295 42.308 0.00 0.00 44.28 1.47
1842 1991 5.510179 CGATGTTTTCGGGGTACATAGGTAT 60.510 44.000 0.00 0.00 44.28 2.73
1843 1992 4.202141 CGATGTTTTCGGGGTACATAGGTA 60.202 45.833 0.00 0.00 44.28 3.08
1844 1993 3.431207 CGATGTTTTCGGGGTACATAGGT 60.431 47.826 0.00 0.00 44.28 3.08
1845 1994 3.128349 CGATGTTTTCGGGGTACATAGG 58.872 50.000 0.00 0.00 44.28 2.57
1846 1995 4.049186 CTCGATGTTTTCGGGGTACATAG 58.951 47.826 0.00 0.00 44.94 2.23
1847 1996 4.049546 CTCGATGTTTTCGGGGTACATA 57.950 45.455 0.00 0.00 44.94 2.29
1848 1997 2.901249 CTCGATGTTTTCGGGGTACAT 58.099 47.619 0.00 0.00 44.94 2.29
1849 1998 2.373540 CTCGATGTTTTCGGGGTACA 57.626 50.000 0.00 0.00 44.94 2.90
1857 2006 1.464997 GTGGTGCTCCTCGATGTTTTC 59.535 52.381 6.34 0.00 34.23 2.29
1858 2007 1.523758 GTGGTGCTCCTCGATGTTTT 58.476 50.000 6.34 0.00 34.23 2.43
1859 2008 3.233355 GTGGTGCTCCTCGATGTTT 57.767 52.632 6.34 0.00 34.23 2.83
1866 2015 2.380084 TATGTTTCGTGGTGCTCCTC 57.620 50.000 6.34 1.30 34.23 3.71
1867 2016 2.851263 TTATGTTTCGTGGTGCTCCT 57.149 45.000 6.34 0.00 34.23 3.69
1868 2017 4.412207 GAAATTATGTTTCGTGGTGCTCC 58.588 43.478 0.00 0.00 0.00 4.70
1869 2018 4.083003 TGGAAATTATGTTTCGTGGTGCTC 60.083 41.667 0.00 0.00 0.00 4.26
1870 2019 3.823873 TGGAAATTATGTTTCGTGGTGCT 59.176 39.130 0.00 0.00 0.00 4.40
1871 2020 3.917985 GTGGAAATTATGTTTCGTGGTGC 59.082 43.478 0.00 0.00 0.00 5.01
1872 2021 4.022762 TGGTGGAAATTATGTTTCGTGGTG 60.023 41.667 0.00 0.00 0.00 4.17
1873 2022 4.022676 GTGGTGGAAATTATGTTTCGTGGT 60.023 41.667 0.00 0.00 0.00 4.16
1874 2023 4.481463 GTGGTGGAAATTATGTTTCGTGG 58.519 43.478 0.00 0.00 0.00 4.94
1875 2024 4.481463 GGTGGTGGAAATTATGTTTCGTG 58.519 43.478 0.00 0.00 0.00 4.35
1876 2025 3.189702 CGGTGGTGGAAATTATGTTTCGT 59.810 43.478 0.00 0.00 0.00 3.85
1877 2026 3.189702 ACGGTGGTGGAAATTATGTTTCG 59.810 43.478 0.00 0.00 0.00 3.46
1878 2027 4.776795 ACGGTGGTGGAAATTATGTTTC 57.223 40.909 0.00 0.00 0.00 2.78
1879 2028 5.047872 GGTTACGGTGGTGGAAATTATGTTT 60.048 40.000 0.00 0.00 0.00 2.83
1880 2029 4.460034 GGTTACGGTGGTGGAAATTATGTT 59.540 41.667 0.00 0.00 0.00 2.71
1881 2030 4.011698 GGTTACGGTGGTGGAAATTATGT 58.988 43.478 0.00 0.00 0.00 2.29
1882 2031 4.266714 AGGTTACGGTGGTGGAAATTATG 58.733 43.478 0.00 0.00 0.00 1.90
1883 2032 4.579647 AGGTTACGGTGGTGGAAATTAT 57.420 40.909 0.00 0.00 0.00 1.28
1884 2033 4.041938 AGAAGGTTACGGTGGTGGAAATTA 59.958 41.667 0.00 0.00 0.00 1.40
1885 2034 2.963599 AGGTTACGGTGGTGGAAATT 57.036 45.000 0.00 0.00 0.00 1.82
1886 2035 2.374170 AGAAGGTTACGGTGGTGGAAAT 59.626 45.455 0.00 0.00 0.00 2.17
1887 2036 1.770061 AGAAGGTTACGGTGGTGGAAA 59.230 47.619 0.00 0.00 0.00 3.13
1888 2037 1.071071 CAGAAGGTTACGGTGGTGGAA 59.929 52.381 0.00 0.00 0.00 3.53
1889 2038 0.682852 CAGAAGGTTACGGTGGTGGA 59.317 55.000 0.00 0.00 0.00 4.02
1890 2039 0.395312 ACAGAAGGTTACGGTGGTGG 59.605 55.000 0.00 0.00 0.00 4.61
1891 2040 3.518590 GATACAGAAGGTTACGGTGGTG 58.481 50.000 0.00 0.00 0.00 4.17
1892 2041 2.498885 GGATACAGAAGGTTACGGTGGT 59.501 50.000 0.00 0.00 0.00 4.16
1893 2042 2.498481 TGGATACAGAAGGTTACGGTGG 59.502 50.000 0.00 0.00 46.17 4.61
1894 2043 3.880047 TGGATACAGAAGGTTACGGTG 57.120 47.619 0.00 0.00 46.17 4.94
1901 2050 9.759176 AGATGAGATCTCGTGGATACAGAAGGT 62.759 44.444 22.20 0.00 41.87 3.50
1902 2051 7.468636 AGATGAGATCTCGTGGATACAGAAGG 61.469 46.154 22.20 0.00 41.87 3.46
1903 2052 5.473162 AGATGAGATCTCGTGGATACAGAAG 59.527 44.000 22.20 0.00 41.87 2.85
1904 2053 5.380900 AGATGAGATCTCGTGGATACAGAA 58.619 41.667 22.20 0.00 41.87 3.02
1905 2054 4.979335 AGATGAGATCTCGTGGATACAGA 58.021 43.478 22.20 0.00 41.87 3.41
1906 2055 5.459768 CAAGATGAGATCTCGTGGATACAG 58.540 45.833 22.20 1.68 44.15 2.74
1907 2056 4.279420 CCAAGATGAGATCTCGTGGATACA 59.721 45.833 22.20 0.24 41.89 2.29
1908 2057 4.520874 TCCAAGATGAGATCTCGTGGATAC 59.479 45.833 22.20 7.28 39.94 2.24
1909 2058 4.729868 TCCAAGATGAGATCTCGTGGATA 58.270 43.478 22.20 1.09 39.94 2.59
1910 2059 3.570540 TCCAAGATGAGATCTCGTGGAT 58.429 45.455 22.20 7.58 39.94 3.41
1911 2060 2.954989 CTCCAAGATGAGATCTCGTGGA 59.045 50.000 22.20 23.62 41.62 4.02
1912 2061 2.545532 GCTCCAAGATGAGATCTCGTGG 60.546 54.545 22.20 21.17 39.08 4.94
1913 2062 2.545532 GGCTCCAAGATGAGATCTCGTG 60.546 54.545 22.20 13.92 39.08 4.35
1914 2063 1.686052 GGCTCCAAGATGAGATCTCGT 59.314 52.381 17.50 17.50 39.08 4.18
1915 2064 1.962807 AGGCTCCAAGATGAGATCTCG 59.037 52.381 17.76 3.06 39.08 4.04
1916 2065 3.552684 CGAAGGCTCCAAGATGAGATCTC 60.553 52.174 16.21 16.21 39.08 2.75
1917 2066 2.364970 CGAAGGCTCCAAGATGAGATCT 59.635 50.000 0.00 0.00 42.61 2.75
1918 2067 2.753296 CGAAGGCTCCAAGATGAGATC 58.247 52.381 0.00 0.00 34.11 2.75
1919 2068 1.202627 GCGAAGGCTCCAAGATGAGAT 60.203 52.381 0.00 0.00 34.11 2.75
1920 2069 0.176680 GCGAAGGCTCCAAGATGAGA 59.823 55.000 0.00 0.00 34.11 3.27
1921 2070 2.687842 GCGAAGGCTCCAAGATGAG 58.312 57.895 0.00 0.00 35.83 2.90
1922 2071 4.941609 GCGAAGGCTCCAAGATGA 57.058 55.556 0.00 0.00 35.83 2.92
1933 2082 2.811317 GCAGAGTGTCGGCGAAGG 60.811 66.667 12.92 0.00 0.00 3.46
1934 2083 2.811317 GGCAGAGTGTCGGCGAAG 60.811 66.667 12.92 0.00 38.48 3.79
1940 2089 4.135153 CCCTCCGGCAGAGTGTCG 62.135 72.222 0.00 0.00 46.34 4.35
1941 2090 3.775654 CCCCTCCGGCAGAGTGTC 61.776 72.222 0.00 0.00 41.47 3.67
1944 2093 3.642741 ATTCCCCCTCCGGCAGAGT 62.643 63.158 0.00 0.00 41.47 3.24
1945 2094 2.770048 ATTCCCCCTCCGGCAGAG 60.770 66.667 0.00 0.00 42.83 3.35
1946 2095 2.768344 GATTCCCCCTCCGGCAGA 60.768 66.667 0.00 0.00 0.00 4.26
1947 2096 4.241555 CGATTCCCCCTCCGGCAG 62.242 72.222 0.00 0.00 0.00 4.85
1948 2097 4.789173 TCGATTCCCCCTCCGGCA 62.789 66.667 0.00 0.00 0.00 5.69
1949 2098 4.237207 GTCGATTCCCCCTCCGGC 62.237 72.222 0.00 0.00 0.00 6.13
1950 2099 3.547513 GGTCGATTCCCCCTCCGG 61.548 72.222 0.00 0.00 0.00 5.14
1951 2100 2.140792 ATGGTCGATTCCCCCTCCG 61.141 63.158 0.00 0.00 0.00 4.63
1952 2101 1.451936 CATGGTCGATTCCCCCTCC 59.548 63.158 0.00 0.00 0.00 4.30
1953 2102 1.054406 TCCATGGTCGATTCCCCCTC 61.054 60.000 12.58 0.00 0.00 4.30
1954 2103 1.004230 TCCATGGTCGATTCCCCCT 59.996 57.895 12.58 0.00 0.00 4.79
1955 2104 1.451936 CTCCATGGTCGATTCCCCC 59.548 63.158 12.58 0.00 0.00 5.40
1956 2105 1.451936 CCTCCATGGTCGATTCCCC 59.548 63.158 12.58 0.00 0.00 4.81
1957 2106 1.451936 CCCTCCATGGTCGATTCCC 59.548 63.158 12.58 0.00 0.00 3.97
1958 2107 1.227973 GCCCTCCATGGTCGATTCC 60.228 63.158 12.58 0.00 0.00 3.01
1959 2108 0.181350 AAGCCCTCCATGGTCGATTC 59.819 55.000 12.58 0.00 0.00 2.52
1960 2109 0.181350 GAAGCCCTCCATGGTCGATT 59.819 55.000 12.58 5.16 0.00 3.34
1961 2110 0.692419 AGAAGCCCTCCATGGTCGAT 60.692 55.000 12.58 0.00 0.00 3.59
1962 2111 0.032515 TAGAAGCCCTCCATGGTCGA 60.033 55.000 12.58 0.00 0.00 4.20
1963 2112 0.105039 GTAGAAGCCCTCCATGGTCG 59.895 60.000 12.58 4.18 0.00 4.79
1964 2113 1.204146 TGTAGAAGCCCTCCATGGTC 58.796 55.000 12.58 0.00 0.00 4.02
1965 2114 1.771255 GATGTAGAAGCCCTCCATGGT 59.229 52.381 12.58 0.00 0.00 3.55
1966 2115 1.770658 TGATGTAGAAGCCCTCCATGG 59.229 52.381 4.97 4.97 0.00 3.66
1967 2116 3.209410 GTTGATGTAGAAGCCCTCCATG 58.791 50.000 0.00 0.00 0.00 3.66
1968 2117 2.846206 TGTTGATGTAGAAGCCCTCCAT 59.154 45.455 0.00 0.00 0.00 3.41
1969 2118 2.265367 TGTTGATGTAGAAGCCCTCCA 58.735 47.619 0.00 0.00 0.00 3.86
1970 2119 3.471680 GATGTTGATGTAGAAGCCCTCC 58.528 50.000 0.00 0.00 0.00 4.30
1971 2120 3.135530 AGGATGTTGATGTAGAAGCCCTC 59.864 47.826 0.00 0.00 0.00 4.30
1972 2121 3.118531 AGGATGTTGATGTAGAAGCCCT 58.881 45.455 0.00 0.00 0.00 5.19
1973 2122 3.567478 AGGATGTTGATGTAGAAGCCC 57.433 47.619 0.00 0.00 0.00 5.19
1974 2123 3.065925 GCAAGGATGTTGATGTAGAAGCC 59.934 47.826 0.00 0.00 0.00 4.35
1975 2124 3.065925 GGCAAGGATGTTGATGTAGAAGC 59.934 47.826 0.00 0.00 0.00 3.86
1976 2125 3.629398 GGGCAAGGATGTTGATGTAGAAG 59.371 47.826 0.00 0.00 0.00 2.85
1977 2126 3.620488 GGGCAAGGATGTTGATGTAGAA 58.380 45.455 0.00 0.00 0.00 2.10
1978 2127 2.092429 GGGGCAAGGATGTTGATGTAGA 60.092 50.000 0.00 0.00 0.00 2.59
1979 2128 2.092212 AGGGGCAAGGATGTTGATGTAG 60.092 50.000 0.00 0.00 0.00 2.74
1980 2129 1.922447 AGGGGCAAGGATGTTGATGTA 59.078 47.619 0.00 0.00 0.00 2.29
1981 2130 0.706433 AGGGGCAAGGATGTTGATGT 59.294 50.000 0.00 0.00 0.00 3.06
1982 2131 1.396653 GAGGGGCAAGGATGTTGATG 58.603 55.000 0.00 0.00 0.00 3.07
1983 2132 0.259938 GGAGGGGCAAGGATGTTGAT 59.740 55.000 0.00 0.00 0.00 2.57
1984 2133 1.691219 GGAGGGGCAAGGATGTTGA 59.309 57.895 0.00 0.00 0.00 3.18
1985 2134 1.750399 CGGAGGGGCAAGGATGTTG 60.750 63.158 0.00 0.00 0.00 3.33
1986 2135 1.281925 ATCGGAGGGGCAAGGATGTT 61.282 55.000 0.00 0.00 0.00 2.71
1987 2136 1.694169 ATCGGAGGGGCAAGGATGT 60.694 57.895 0.00 0.00 0.00 3.06
1988 2137 1.228063 CATCGGAGGGGCAAGGATG 60.228 63.158 0.00 0.00 0.00 3.51
1989 2138 1.384502 TCATCGGAGGGGCAAGGAT 60.385 57.895 0.00 0.00 0.00 3.24
1990 2139 2.040442 TCATCGGAGGGGCAAGGA 59.960 61.111 0.00 0.00 0.00 3.36
1991 2140 1.915078 AACTCATCGGAGGGGCAAGG 61.915 60.000 0.00 0.00 45.81 3.61
1992 2141 0.745845 CAACTCATCGGAGGGGCAAG 60.746 60.000 0.00 0.00 45.81 4.01
1993 2142 1.299648 CAACTCATCGGAGGGGCAA 59.700 57.895 0.00 0.00 45.81 4.52
1994 2143 1.918293 ACAACTCATCGGAGGGGCA 60.918 57.895 0.00 0.00 45.81 5.36
1995 2144 1.450312 CACAACTCATCGGAGGGGC 60.450 63.158 0.00 0.00 45.81 5.80
1996 2145 0.176680 CTCACAACTCATCGGAGGGG 59.823 60.000 0.00 0.00 45.81 4.79
1997 2146 0.898320 ACTCACAACTCATCGGAGGG 59.102 55.000 0.00 0.00 45.81 4.30
1998 2147 2.755655 ACTACTCACAACTCATCGGAGG 59.244 50.000 0.00 0.00 45.81 4.30
1999 2148 4.442375 AACTACTCACAACTCATCGGAG 57.558 45.455 0.00 0.00 46.96 4.63
2000 2149 4.866508 AAACTACTCACAACTCATCGGA 57.133 40.909 0.00 0.00 0.00 4.55
2001 2150 4.863131 GGTAAACTACTCACAACTCATCGG 59.137 45.833 0.00 0.00 0.00 4.18
2002 2151 5.466819 TGGTAAACTACTCACAACTCATCG 58.533 41.667 0.00 0.00 0.00 3.84
2003 2152 8.467598 TCTATGGTAAACTACTCACAACTCATC 58.532 37.037 0.00 0.00 0.00 2.92
2004 2153 8.251721 GTCTATGGTAAACTACTCACAACTCAT 58.748 37.037 0.00 0.00 0.00 2.90
2005 2154 7.309621 GGTCTATGGTAAACTACTCACAACTCA 60.310 40.741 0.00 0.00 0.00 3.41
2006 2155 7.034397 GGTCTATGGTAAACTACTCACAACTC 58.966 42.308 0.00 0.00 0.00 3.01
2007 2156 6.724905 AGGTCTATGGTAAACTACTCACAACT 59.275 38.462 0.00 0.00 0.00 3.16
2008 2157 6.932947 AGGTCTATGGTAAACTACTCACAAC 58.067 40.000 0.00 0.00 0.00 3.32
2009 2158 7.148188 CGTAGGTCTATGGTAAACTACTCACAA 60.148 40.741 0.00 0.00 31.19 3.33
2010 2159 6.317140 CGTAGGTCTATGGTAAACTACTCACA 59.683 42.308 0.00 0.00 31.19 3.58
2011 2160 6.723282 CGTAGGTCTATGGTAAACTACTCAC 58.277 44.000 0.00 0.00 31.19 3.51
2012 2161 6.932356 CGTAGGTCTATGGTAAACTACTCA 57.068 41.667 0.00 0.00 31.19 3.41
2031 2180 5.979288 AGCTAATAACTATGGACCCGTAG 57.021 43.478 12.51 12.51 40.39 3.51
2032 2181 6.782986 TCTAGCTAATAACTATGGACCCGTA 58.217 40.000 0.00 0.00 0.00 4.02
2033 2182 5.638133 TCTAGCTAATAACTATGGACCCGT 58.362 41.667 0.00 0.00 0.00 5.28
2034 2183 6.405953 CCATCTAGCTAATAACTATGGACCCG 60.406 46.154 0.00 0.00 0.00 5.28
2035 2184 6.668283 TCCATCTAGCTAATAACTATGGACCC 59.332 42.308 10.91 0.00 28.39 4.46
2036 2185 7.719871 TCCATCTAGCTAATAACTATGGACC 57.280 40.000 10.91 0.00 28.39 4.46
2037 2186 9.810545 GAATCCATCTAGCTAATAACTATGGAC 57.189 37.037 14.66 5.48 33.65 4.02
2038 2187 9.775539 AGAATCCATCTAGCTAATAACTATGGA 57.224 33.333 14.69 14.69 36.32 3.41
2048 2197 9.965902 AAAAGAGAAAAGAATCCATCTAGCTAA 57.034 29.630 0.00 0.00 37.42 3.09
2049 2198 9.965902 AAAAAGAGAAAAGAATCCATCTAGCTA 57.034 29.630 0.00 0.00 37.42 3.32
2050 2199 8.738106 CAAAAAGAGAAAAGAATCCATCTAGCT 58.262 33.333 0.00 0.00 37.42 3.32
2051 2200 7.972832 CCAAAAAGAGAAAAGAATCCATCTAGC 59.027 37.037 0.00 0.00 37.42 3.42
2052 2201 9.236006 TCCAAAAAGAGAAAAGAATCCATCTAG 57.764 33.333 0.00 0.00 37.42 2.43
2053 2202 9.759473 ATCCAAAAAGAGAAAAGAATCCATCTA 57.241 29.630 0.00 0.00 37.42 1.98
2054 2203 8.661752 ATCCAAAAAGAGAAAAGAATCCATCT 57.338 30.769 0.00 0.00 41.32 2.90
2055 2204 8.747471 AGATCCAAAAAGAGAAAAGAATCCATC 58.253 33.333 0.00 0.00 0.00 3.51
2056 2205 8.661752 AGATCCAAAAAGAGAAAAGAATCCAT 57.338 30.769 0.00 0.00 0.00 3.41
2057 2206 7.725397 TGAGATCCAAAAAGAGAAAAGAATCCA 59.275 33.333 0.00 0.00 0.00 3.41
2058 2207 8.115490 TGAGATCCAAAAAGAGAAAAGAATCC 57.885 34.615 0.00 0.00 0.00 3.01
2062 2211 9.573166 TGTATTGAGATCCAAAAAGAGAAAAGA 57.427 29.630 1.49 0.00 38.43 2.52
2066 2215 9.300681 ACATTGTATTGAGATCCAAAAAGAGAA 57.699 29.630 1.49 0.00 38.43 2.87
2067 2216 8.868522 ACATTGTATTGAGATCCAAAAAGAGA 57.131 30.769 1.49 0.00 38.43 3.10
2068 2217 9.565213 GAACATTGTATTGAGATCCAAAAAGAG 57.435 33.333 0.00 0.00 38.43 2.85
2069 2218 9.300681 AGAACATTGTATTGAGATCCAAAAAGA 57.699 29.630 0.00 0.00 38.43 2.52
2070 2219 9.565213 GAGAACATTGTATTGAGATCCAAAAAG 57.435 33.333 0.00 0.00 38.43 2.27
2071 2220 8.522830 GGAGAACATTGTATTGAGATCCAAAAA 58.477 33.333 0.00 0.00 38.43 1.94
2072 2221 7.122650 GGGAGAACATTGTATTGAGATCCAAAA 59.877 37.037 0.00 0.00 38.43 2.44
2073 2222 6.603201 GGGAGAACATTGTATTGAGATCCAAA 59.397 38.462 0.00 0.00 38.43 3.28
2074 2223 6.122277 GGGAGAACATTGTATTGAGATCCAA 58.878 40.000 0.00 0.00 39.41 3.53
2075 2224 5.397899 GGGGAGAACATTGTATTGAGATCCA 60.398 44.000 0.00 0.00 0.00 3.41
2076 2225 5.066593 GGGGAGAACATTGTATTGAGATCC 58.933 45.833 0.00 0.00 0.00 3.36
2077 2226 5.066593 GGGGGAGAACATTGTATTGAGATC 58.933 45.833 0.00 0.00 0.00 2.75
2078 2227 4.728860 AGGGGGAGAACATTGTATTGAGAT 59.271 41.667 0.00 0.00 0.00 2.75
2079 2228 4.111577 AGGGGGAGAACATTGTATTGAGA 58.888 43.478 0.00 0.00 0.00 3.27
2080 2229 4.164988 AGAGGGGGAGAACATTGTATTGAG 59.835 45.833 0.00 0.00 0.00 3.02
2081 2230 4.111577 AGAGGGGGAGAACATTGTATTGA 58.888 43.478 0.00 0.00 0.00 2.57
2082 2231 4.164988 AGAGAGGGGGAGAACATTGTATTG 59.835 45.833 0.00 0.00 0.00 1.90
2083 2232 4.375313 AGAGAGGGGGAGAACATTGTATT 58.625 43.478 0.00 0.00 0.00 1.89
2084 2233 4.014273 AGAGAGGGGGAGAACATTGTAT 57.986 45.455 0.00 0.00 0.00 2.29
2085 2234 3.491766 AGAGAGGGGGAGAACATTGTA 57.508 47.619 0.00 0.00 0.00 2.41
2086 2235 2.307098 CAAGAGAGGGGGAGAACATTGT 59.693 50.000 0.00 0.00 0.00 2.71
2087 2236 2.307098 ACAAGAGAGGGGGAGAACATTG 59.693 50.000 0.00 0.00 0.00 2.82
2088 2237 2.307098 CACAAGAGAGGGGGAGAACATT 59.693 50.000 0.00 0.00 0.00 2.71
2089 2238 1.912043 CACAAGAGAGGGGGAGAACAT 59.088 52.381 0.00 0.00 0.00 2.71
2090 2239 1.132849 TCACAAGAGAGGGGGAGAACA 60.133 52.381 0.00 0.00 0.00 3.18
2091 2240 1.645710 TCACAAGAGAGGGGGAGAAC 58.354 55.000 0.00 0.00 0.00 3.01
2092 2241 2.158158 TCTTCACAAGAGAGGGGGAGAA 60.158 50.000 0.00 0.00 32.71 2.87
2093 2242 1.433199 TCTTCACAAGAGAGGGGGAGA 59.567 52.381 0.00 0.00 32.71 3.71
2094 2243 1.944177 TCTTCACAAGAGAGGGGGAG 58.056 55.000 0.00 0.00 32.71 4.30
2095 2244 2.045047 AGATCTTCACAAGAGAGGGGGA 59.955 50.000 0.00 0.00 41.61 4.81
2096 2245 2.476199 AGATCTTCACAAGAGAGGGGG 58.524 52.381 0.00 0.00 41.61 5.40
2097 2246 5.885449 AATAGATCTTCACAAGAGAGGGG 57.115 43.478 0.00 0.00 41.61 4.79
2098 2247 6.882656 TCAAATAGATCTTCACAAGAGAGGG 58.117 40.000 0.00 0.00 41.61 4.30
2099 2248 7.986320 ACATCAAATAGATCTTCACAAGAGAGG 59.014 37.037 0.00 0.00 41.61 3.69
2100 2249 8.945481 ACATCAAATAGATCTTCACAAGAGAG 57.055 34.615 0.00 0.00 41.61 3.20
2113 2262 9.941664 CGCAAAAAGAGATTACATCAAATAGAT 57.058 29.630 0.00 0.00 37.48 1.98
2114 2263 8.397906 CCGCAAAAAGAGATTACATCAAATAGA 58.602 33.333 0.00 0.00 0.00 1.98
2115 2264 8.184192 ACCGCAAAAAGAGATTACATCAAATAG 58.816 33.333 0.00 0.00 0.00 1.73
2116 2265 7.967854 CACCGCAAAAAGAGATTACATCAAATA 59.032 33.333 0.00 0.00 0.00 1.40
2117 2266 6.808212 CACCGCAAAAAGAGATTACATCAAAT 59.192 34.615 0.00 0.00 0.00 2.32
2118 2267 6.148948 CACCGCAAAAAGAGATTACATCAAA 58.851 36.000 0.00 0.00 0.00 2.69
2119 2268 5.240623 ACACCGCAAAAAGAGATTACATCAA 59.759 36.000 0.00 0.00 0.00 2.57
2120 2269 4.759693 ACACCGCAAAAAGAGATTACATCA 59.240 37.500 0.00 0.00 0.00 3.07
2121 2270 5.088739 CACACCGCAAAAAGAGATTACATC 58.911 41.667 0.00 0.00 0.00 3.06
2122 2271 4.518970 ACACACCGCAAAAAGAGATTACAT 59.481 37.500 0.00 0.00 0.00 2.29
2123 2272 3.880490 ACACACCGCAAAAAGAGATTACA 59.120 39.130 0.00 0.00 0.00 2.41
2124 2273 4.483476 ACACACCGCAAAAAGAGATTAC 57.517 40.909 0.00 0.00 0.00 1.89
2125 2274 5.163602 ACAAACACACCGCAAAAAGAGATTA 60.164 36.000 0.00 0.00 0.00 1.75
2126 2275 4.111916 CAAACACACCGCAAAAAGAGATT 58.888 39.130 0.00 0.00 0.00 2.40
2127 2276 3.130340 ACAAACACACCGCAAAAAGAGAT 59.870 39.130 0.00 0.00 0.00 2.75
2128 2277 2.490115 ACAAACACACCGCAAAAAGAGA 59.510 40.909 0.00 0.00 0.00 3.10
2129 2278 2.851824 GACAAACACACCGCAAAAAGAG 59.148 45.455 0.00 0.00 0.00 2.85
2130 2279 2.729467 CGACAAACACACCGCAAAAAGA 60.729 45.455 0.00 0.00 0.00 2.52
2131 2280 1.581602 CGACAAACACACCGCAAAAAG 59.418 47.619 0.00 0.00 0.00 2.27
2132 2281 1.199327 TCGACAAACACACCGCAAAAA 59.801 42.857 0.00 0.00 0.00 1.94
2133 2282 0.803117 TCGACAAACACACCGCAAAA 59.197 45.000 0.00 0.00 0.00 2.44
2134 2283 0.375454 CTCGACAAACACACCGCAAA 59.625 50.000 0.00 0.00 0.00 3.68
2135 2284 0.460459 TCTCGACAAACACACCGCAA 60.460 50.000 0.00 0.00 0.00 4.85
2136 2285 0.249699 ATCTCGACAAACACACCGCA 60.250 50.000 0.00 0.00 0.00 5.69
2137 2286 0.438830 GATCTCGACAAACACACCGC 59.561 55.000 0.00 0.00 0.00 5.68
2138 2287 1.068474 GGATCTCGACAAACACACCG 58.932 55.000 0.00 0.00 0.00 4.94
2139 2288 1.068474 CGGATCTCGACAAACACACC 58.932 55.000 0.00 0.00 42.43 4.16
2140 2289 2.060326 TCGGATCTCGACAAACACAC 57.940 50.000 2.65 0.00 43.74 3.82
2150 2299 2.138320 CCCACAATTCATCGGATCTCG 58.862 52.381 0.00 0.00 40.90 4.04
2151 2300 3.199880 ACCCACAATTCATCGGATCTC 57.800 47.619 0.00 0.00 0.00 2.75
2152 2301 3.652057 AACCCACAATTCATCGGATCT 57.348 42.857 0.00 0.00 0.00 2.75
2153 2302 5.530915 TCATAAACCCACAATTCATCGGATC 59.469 40.000 0.00 0.00 0.00 3.36
2154 2303 5.445069 TCATAAACCCACAATTCATCGGAT 58.555 37.500 0.00 0.00 0.00 4.18
2155 2304 4.849518 TCATAAACCCACAATTCATCGGA 58.150 39.130 0.00 0.00 0.00 4.55
2156 2305 5.299028 TGATCATAAACCCACAATTCATCGG 59.701 40.000 0.00 0.00 0.00 4.18
2157 2306 6.375945 TGATCATAAACCCACAATTCATCG 57.624 37.500 0.00 0.00 0.00 3.84
2158 2307 7.775120 ACTTGATCATAAACCCACAATTCATC 58.225 34.615 0.00 0.00 0.00 2.92
2159 2308 7.722949 ACTTGATCATAAACCCACAATTCAT 57.277 32.000 0.00 0.00 0.00 2.57
2160 2309 7.537596 AACTTGATCATAAACCCACAATTCA 57.462 32.000 0.00 0.00 0.00 2.57
2163 2312 9.479549 AGATAAACTTGATCATAAACCCACAAT 57.520 29.630 0.00 0.00 0.00 2.71
2164 2313 8.877864 AGATAAACTTGATCATAAACCCACAA 57.122 30.769 0.00 0.00 0.00 3.33
2233 2382 7.950963 TTCGAAGAGACTTGCAAAGATAACTCA 60.951 37.037 0.00 0.00 43.32 3.41
2234 2383 6.366332 TTCGAAGAGACTTGCAAAGATAACTC 59.634 38.462 0.00 3.73 43.32 3.01
2235 2384 6.223852 TTCGAAGAGACTTGCAAAGATAACT 58.776 36.000 0.00 0.00 43.32 2.24
2236 2385 6.467723 TTCGAAGAGACTTGCAAAGATAAC 57.532 37.500 0.00 0.00 43.32 1.89
2237 2386 7.672983 AATTCGAAGAGACTTGCAAAGATAA 57.327 32.000 3.35 0.00 43.32 1.75
2238 2387 8.948631 ATAATTCGAAGAGACTTGCAAAGATA 57.051 30.769 3.35 0.00 43.32 1.98
2239 2388 7.550551 TGATAATTCGAAGAGACTTGCAAAGAT 59.449 33.333 3.35 0.00 43.32 2.40
2240 2389 6.873605 TGATAATTCGAAGAGACTTGCAAAGA 59.126 34.615 3.35 0.00 43.32 2.52
2241 2390 7.065216 TGATAATTCGAAGAGACTTGCAAAG 57.935 36.000 3.35 0.00 45.61 2.77
2242 2391 6.650807 ACTGATAATTCGAAGAGACTTGCAAA 59.349 34.615 3.35 0.00 38.43 3.68
2243 2392 6.166279 ACTGATAATTCGAAGAGACTTGCAA 58.834 36.000 3.35 0.00 38.43 4.08
2244 2393 5.724328 ACTGATAATTCGAAGAGACTTGCA 58.276 37.500 3.35 0.00 38.43 4.08
2245 2394 6.654793 AACTGATAATTCGAAGAGACTTGC 57.345 37.500 3.35 0.00 38.43 4.01
2246 2395 7.118390 ACCAAACTGATAATTCGAAGAGACTTG 59.882 37.037 3.35 0.26 38.43 3.16
2247 2396 7.162082 ACCAAACTGATAATTCGAAGAGACTT 58.838 34.615 3.35 0.00 38.43 3.01
2248 2397 6.702329 ACCAAACTGATAATTCGAAGAGACT 58.298 36.000 3.35 0.00 38.43 3.24
2249 2398 6.969828 ACCAAACTGATAATTCGAAGAGAC 57.030 37.500 3.35 0.00 38.43 3.36
2250 2399 7.094805 CCAAACCAAACTGATAATTCGAAGAGA 60.095 37.037 3.35 0.00 38.43 3.10
2251 2400 7.023575 CCAAACCAAACTGATAATTCGAAGAG 58.976 38.462 3.35 0.00 38.43 2.85
2252 2401 6.569610 GCCAAACCAAACTGATAATTCGAAGA 60.570 38.462 3.35 0.00 0.00 2.87
2253 2402 5.572896 GCCAAACCAAACTGATAATTCGAAG 59.427 40.000 3.35 0.00 0.00 3.79
2254 2403 5.465935 GCCAAACCAAACTGATAATTCGAA 58.534 37.500 0.00 0.00 0.00 3.71
2255 2404 4.082463 GGCCAAACCAAACTGATAATTCGA 60.082 41.667 0.00 0.00 38.86 3.71
2256 2405 4.082245 AGGCCAAACCAAACTGATAATTCG 60.082 41.667 5.01 0.00 43.14 3.34
2257 2406 5.405935 AGGCCAAACCAAACTGATAATTC 57.594 39.130 5.01 0.00 43.14 2.17
2258 2407 6.016555 AGTAGGCCAAACCAAACTGATAATT 58.983 36.000 5.01 0.00 43.14 1.40
2259 2408 5.580022 AGTAGGCCAAACCAAACTGATAAT 58.420 37.500 5.01 0.00 43.14 1.28
2260 2409 4.993028 AGTAGGCCAAACCAAACTGATAA 58.007 39.130 5.01 0.00 43.14 1.75
2261 2410 4.650972 AGTAGGCCAAACCAAACTGATA 57.349 40.909 5.01 0.00 43.14 2.15
2262 2411 3.525800 AGTAGGCCAAACCAAACTGAT 57.474 42.857 5.01 0.00 43.14 2.90
2263 2412 3.649023 TCTAGTAGGCCAAACCAAACTGA 59.351 43.478 5.01 0.00 43.14 3.41
2264 2413 4.015872 TCTAGTAGGCCAAACCAAACTG 57.984 45.455 5.01 0.00 43.14 3.16
2265 2414 4.929146 ATCTAGTAGGCCAAACCAAACT 57.071 40.909 5.01 0.00 43.14 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.