Multiple sequence alignment - TraesCS4B01G246000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G246000 chr4B 100.000 2242 0 0 2008 4249 510305187 510307428 0.000000e+00 4141
1 TraesCS4B01G246000 chr4B 100.000 1785 0 0 1 1785 510303180 510304964 0.000000e+00 3297
2 TraesCS4B01G246000 chr4B 99.213 127 1 0 4123 4249 74303685 74303559 3.300000e-56 230
3 TraesCS4B01G246000 chr4B 99.213 127 1 0 4123 4249 555953896 555954022 3.300000e-56 230
4 TraesCS4B01G246000 chr4A 95.991 1696 61 5 2017 3712 49263364 49261676 0.000000e+00 2748
5 TraesCS4B01G246000 chr4A 92.122 1777 67 34 1 1741 49265111 49263372 0.000000e+00 2438
6 TraesCS4B01G246000 chr4A 87.828 419 19 7 3714 4118 49261498 49261098 2.990000e-126 462
7 TraesCS4B01G246000 chr4A 98.485 132 2 0 4118 4249 647678696 647678565 2.550000e-57 233
8 TraesCS4B01G246000 chr4D 96.216 1665 50 7 2058 3716 414146726 414148383 0.000000e+00 2713
9 TraesCS4B01G246000 chr4D 92.119 1751 88 22 1 1726 414144830 414146555 0.000000e+00 2423
10 TraesCS4B01G246000 chr4D 93.396 212 10 2 3714 3921 414148598 414148809 1.150000e-80 311
11 TraesCS4B01G246000 chr4D 90.164 183 10 2 3937 4119 414148905 414149079 9.190000e-57 231
12 TraesCS4B01G246000 chr1B 86.000 1050 142 3 2203 3251 345409678 345408633 0.000000e+00 1120
13 TraesCS4B01G246000 chr1B 99.213 127 1 0 4123 4249 100287376 100287502 3.300000e-56 230
14 TraesCS4B01G246000 chr1B 99.213 127 1 0 4123 4249 640054413 640054539 3.300000e-56 230
15 TraesCS4B01G246000 chr1D 85.741 1052 141 7 2203 3251 267594804 267595849 0.000000e+00 1103
16 TraesCS4B01G246000 chr1A 85.714 1050 145 3 2203 3251 335543149 335542104 0.000000e+00 1103
17 TraesCS4B01G246000 chr2B 99.219 128 1 0 4122 4249 97041694 97041567 9.190000e-57 231
18 TraesCS4B01G246000 chr2B 99.219 128 1 0 4122 4249 787884051 787883924 9.190000e-57 231
19 TraesCS4B01G246000 chrUn 99.213 127 1 0 4123 4249 307632391 307632265 3.300000e-56 230
20 TraesCS4B01G246000 chr7B 99.213 127 1 0 4123 4249 120133485 120133611 3.300000e-56 230


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G246000 chr4B 510303180 510307428 4248 False 3719.000000 4141 100.000000 1 4249 2 chr4B.!!$F2 4248
1 TraesCS4B01G246000 chr4A 49261098 49265111 4013 True 1882.666667 2748 91.980333 1 4118 3 chr4A.!!$R2 4117
2 TraesCS4B01G246000 chr4D 414144830 414149079 4249 False 1419.500000 2713 92.973750 1 4119 4 chr4D.!!$F1 4118
3 TraesCS4B01G246000 chr1B 345408633 345409678 1045 True 1120.000000 1120 86.000000 2203 3251 1 chr1B.!!$R1 1048
4 TraesCS4B01G246000 chr1D 267594804 267595849 1045 False 1103.000000 1103 85.741000 2203 3251 1 chr1D.!!$F1 1048
5 TraesCS4B01G246000 chr1A 335542104 335543149 1045 True 1103.000000 1103 85.714000 2203 3251 1 chr1A.!!$R1 1048

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 280 0.030908 GCCTCCACCTAACGATCTCG 59.969 60.0 0.00 0.0 46.33 4.04 F
819 847 0.179166 CGTGGGCAAATGGATCGTTG 60.179 55.0 0.00 0.0 0.00 4.10 F
820 848 0.887933 GTGGGCAAATGGATCGTTGT 59.112 50.0 4.84 0.0 0.00 3.32 F
2104 2232 0.905337 ACTGTCTGGGGCTACTCCAC 60.905 60.0 0.00 0.0 39.32 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2246 2374 0.249120 CCACACCATAGACCGAAGCA 59.751 55.000 0.0 0.0 0.00 3.91 R
2585 2713 0.688418 ATGATGGGCATGGTTGGTGG 60.688 55.000 0.0 0.0 35.42 4.61 R
2663 2791 3.007940 CAGTCAGGGTGAACTGGTTATCA 59.992 47.826 0.0 0.0 38.98 2.15 R
3775 4126 0.320374 ACTCCGACATTTGGCTCGAA 59.680 50.000 0.0 0.0 31.24 3.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 162 4.867047 TCTGAATCTCAAACTCGATCTTGC 59.133 41.667 2.51 0.00 0.00 4.01
263 280 0.030908 GCCTCCACCTAACGATCTCG 59.969 60.000 0.00 0.00 46.33 4.04
299 316 3.489416 CGAATCATTTGATGCCATTGCTG 59.511 43.478 0.00 0.00 38.71 4.41
376 397 3.036084 CGTCGCAGCAGTCGGTTT 61.036 61.111 0.00 0.00 0.00 3.27
409 430 3.071206 GAGGCCCTCGTCAGCAGA 61.071 66.667 0.00 0.00 0.00 4.26
434 461 4.619227 CGAACACCCCGTGTGCCT 62.619 66.667 0.00 0.00 46.79 4.75
539 566 1.985116 GAGTTCGCCTCTCCCCACT 60.985 63.158 0.00 0.00 37.22 4.00
710 738 6.956299 GTGCTGAATATTCTTGCACAATTT 57.044 33.333 34.87 0.42 46.61 1.82
819 847 0.179166 CGTGGGCAAATGGATCGTTG 60.179 55.000 0.00 0.00 0.00 4.10
820 848 0.887933 GTGGGCAAATGGATCGTTGT 59.112 50.000 4.84 0.00 0.00 3.32
867 895 3.652057 TTAGCTGATTGGCCTTAGCTT 57.348 42.857 22.17 11.18 43.49 3.74
868 896 4.771114 TTAGCTGATTGGCCTTAGCTTA 57.229 40.909 22.17 14.21 43.49 3.09
870 898 1.606189 GCTGATTGGCCTTAGCTTAGC 59.394 52.381 3.32 0.00 39.73 3.09
871 899 5.885848 AGCTGATTGGCCTTAGCTTAGCC 62.886 52.174 14.88 12.99 43.49 3.93
877 905 1.070914 GGCCTTAGCTTAGCCTAGGTG 59.929 57.143 19.03 0.00 43.62 4.00
1178 1208 3.963476 TCCTTTGACCCTTTTCTTGGA 57.037 42.857 0.00 0.00 0.00 3.53
1193 1223 4.431416 TCTTGGAAGCTGAAACCTGTTA 57.569 40.909 0.00 0.00 0.00 2.41
1403 1435 6.299805 AGAGACAATTATAGGAAGTGCACA 57.700 37.500 21.04 0.00 0.00 4.57
1404 1436 6.711277 AGAGACAATTATAGGAAGTGCACAA 58.289 36.000 21.04 2.43 0.00 3.33
1405 1437 7.341805 AGAGACAATTATAGGAAGTGCACAAT 58.658 34.615 21.04 7.32 0.00 2.71
1408 1440 9.113838 AGACAATTATAGGAAGTGCACAATTAG 57.886 33.333 21.04 10.71 0.00 1.73
1409 1441 9.109393 GACAATTATAGGAAGTGCACAATTAGA 57.891 33.333 21.04 0.00 0.00 2.10
1410 1442 9.461312 ACAATTATAGGAAGTGCACAATTAGAA 57.539 29.630 21.04 9.49 0.00 2.10
1414 1446 5.948992 AGGAAGTGCACAATTAGAAAGTC 57.051 39.130 21.04 0.25 0.00 3.01
1424 1461 3.889520 ATTAGAAAGTCGAGGTGTCCC 57.110 47.619 0.00 0.00 0.00 4.46
1565 1610 4.123506 TCTGAAATATATGGCGTTCGCAA 58.876 39.130 18.46 8.20 0.00 4.85
1580 1625 1.209261 TCGCAAATAGGTGCATCCTCA 59.791 47.619 10.60 0.72 44.42 3.86
1610 1655 3.347958 TGTTCGTTCAAAGTCAATGCC 57.652 42.857 0.00 0.00 0.00 4.40
1612 1657 3.042887 GTTCGTTCAAAGTCAATGCCAC 58.957 45.455 0.00 0.00 0.00 5.01
1716 1761 8.988064 TTCATCAGAACTACTAATGTTCACTC 57.012 34.615 8.91 0.00 44.30 3.51
1764 1892 2.507058 TGATTCAAGACCCAGATCCAGG 59.493 50.000 0.00 0.00 0.00 4.45
1771 1899 2.367377 CCAGATCCAGGGGCAGGA 60.367 66.667 0.00 0.00 39.97 3.86
1783 1911 3.004731 AGGGGCAGGATAGAGTATAGGT 58.995 50.000 0.00 0.00 0.00 3.08
2033 2161 7.088589 GTGTAACCATATCTCTGCACAAAAT 57.911 36.000 0.00 0.00 0.00 1.82
2034 2162 8.208718 GTGTAACCATATCTCTGCACAAAATA 57.791 34.615 0.00 0.00 0.00 1.40
2036 2164 9.407380 TGTAACCATATCTCTGCACAAAATATT 57.593 29.630 0.00 0.00 0.00 1.28
2098 2226 3.585289 TGACATTTAACTGTCTGGGGCTA 59.415 43.478 22.07 2.56 44.73 3.93
2104 2232 0.905337 ACTGTCTGGGGCTACTCCAC 60.905 60.000 0.00 0.00 39.32 4.02
2132 2260 7.942908 GCTTTTTGCATGACTTTCATAGTTAC 58.057 34.615 0.00 0.00 42.31 2.50
2196 2324 3.573967 GCCCTCAAAAGAAGATGGTTCAA 59.426 43.478 0.00 0.00 0.00 2.69
2238 2366 4.333926 GGAATAACACATGGAGCACTCTTC 59.666 45.833 0.00 0.00 0.00 2.87
2246 2374 1.449246 GAGCACTCTTCTGCGCCAT 60.449 57.895 4.18 0.00 42.42 4.40
2252 2380 2.033328 CTCTTCTGCGCCATGCTTCG 62.033 60.000 4.18 0.00 46.63 3.79
2279 2407 1.247567 GTGTGGCTGCTGGTTATTGT 58.752 50.000 0.00 0.00 0.00 2.71
2585 2713 3.610911 CATTGGGGAGACACTTTACCTC 58.389 50.000 0.00 0.00 31.84 3.85
2624 2752 3.325293 TTCAAGACATGGCTCTCACTC 57.675 47.619 0.00 0.00 0.00 3.51
2663 2791 7.336931 GGTGGAAGTGTGATATATGTTTTCACT 59.663 37.037 5.31 0.00 40.29 3.41
2819 2947 1.952296 CTTGAGGCTCTGCTGTTGTTT 59.048 47.619 16.72 0.00 0.00 2.83
3089 3217 0.105246 TTGTGGGGACAATTGGGCTT 60.105 50.000 10.83 0.00 46.06 4.35
3129 3257 2.271800 GTGTTCTCTACCAGCAATCGG 58.728 52.381 0.00 0.00 0.00 4.18
3288 3419 2.861935 CGACAACCCATTCGTGGTATAC 59.138 50.000 0.00 0.00 34.15 1.47
3299 3430 4.432980 TCGTGGTATACCTCAGATGAGA 57.567 45.455 22.41 7.95 44.74 3.27
3327 3458 1.656652 ACATGCTGTAGAACATCGGC 58.343 50.000 0.00 0.00 36.59 5.54
3440 3574 3.514309 GGTACCAGACACCTCAACATACT 59.486 47.826 7.15 0.00 32.98 2.12
3561 3695 3.390175 TCCTTTGTGGGTGAAGGAAAA 57.610 42.857 2.51 0.00 46.25 2.29
3562 3696 3.714144 TCCTTTGTGGGTGAAGGAAAAA 58.286 40.909 2.51 0.00 46.25 1.94
3596 3730 9.486497 ACATCATCATTCATCAGTATTAGTCAC 57.514 33.333 0.00 0.00 0.00 3.67
3615 3749 5.598830 AGTCACGGTTCATGAATAGGTAGAT 59.401 40.000 12.12 0.00 0.00 1.98
3616 3750 5.692204 GTCACGGTTCATGAATAGGTAGATG 59.308 44.000 12.12 3.46 0.00 2.90
3738 4089 3.788227 TTTGTAGATGGCAACCTGTCT 57.212 42.857 0.00 0.00 0.00 3.41
3755 4106 2.360350 TGCTGCTAGCCACCTTGC 60.360 61.111 13.29 7.52 41.51 4.01
3775 4126 3.755378 TGCCAAAAAGTTGCACATTTTGT 59.245 34.783 20.53 3.02 42.10 2.83
3791 4142 0.871722 TTGTTCGAGCCAAATGTCGG 59.128 50.000 0.00 0.00 36.81 4.79
3892 4247 6.592220 GGAACCTAATCAGTTTGAGAAGACTC 59.408 42.308 0.00 0.00 42.88 3.36
3977 4412 1.179152 CAGCCATCCACATTGAAGCA 58.821 50.000 0.00 0.00 0.00 3.91
4017 4452 3.608432 GCAAAGGGCAAGCTAGGG 58.392 61.111 0.00 0.00 43.97 3.53
4018 4453 1.304464 GCAAAGGGCAAGCTAGGGT 60.304 57.895 0.00 0.00 43.97 4.34
4019 4454 1.598701 GCAAAGGGCAAGCTAGGGTG 61.599 60.000 0.00 0.00 43.97 4.61
4020 4455 1.304464 AAAGGGCAAGCTAGGGTGC 60.304 57.895 0.00 0.00 40.14 5.01
4021 4456 1.793820 AAAGGGCAAGCTAGGGTGCT 61.794 55.000 7.97 0.00 46.40 4.40
4032 4467 1.207329 CTAGGGTGCTAGGCGAAAAGT 59.793 52.381 0.00 0.00 0.00 2.66
4066 4501 1.600413 GGGCTCGCAAAGACAAAAGTG 60.600 52.381 0.00 0.00 32.94 3.16
4127 4562 3.465990 TACGGAGTACTCCCTGTCG 57.534 57.895 31.78 22.62 46.96 4.35
4128 4563 0.615331 TACGGAGTACTCCCTGTCGT 59.385 55.000 31.78 26.32 46.96 4.34
4129 4564 0.959372 ACGGAGTACTCCCTGTCGTG 60.959 60.000 31.78 19.79 46.96 4.35
4130 4565 1.654954 CGGAGTACTCCCTGTCGTGG 61.655 65.000 31.78 14.36 46.96 4.94
4131 4566 0.611340 GGAGTACTCCCTGTCGTGGT 60.611 60.000 28.87 0.00 43.94 4.16
4132 4567 1.254954 GAGTACTCCCTGTCGTGGTT 58.745 55.000 12.13 0.00 0.00 3.67
4133 4568 1.201880 GAGTACTCCCTGTCGTGGTTC 59.798 57.143 12.13 0.00 0.00 3.62
4134 4569 1.203025 AGTACTCCCTGTCGTGGTTCT 60.203 52.381 0.00 0.00 0.00 3.01
4135 4570 2.040813 AGTACTCCCTGTCGTGGTTCTA 59.959 50.000 0.00 0.00 0.00 2.10
4136 4571 2.005370 ACTCCCTGTCGTGGTTCTAA 57.995 50.000 0.00 0.00 0.00 2.10
4137 4572 1.893801 ACTCCCTGTCGTGGTTCTAAG 59.106 52.381 0.00 0.00 0.00 2.18
4138 4573 1.893801 CTCCCTGTCGTGGTTCTAAGT 59.106 52.381 0.00 0.00 0.00 2.24
4139 4574 1.891150 TCCCTGTCGTGGTTCTAAGTC 59.109 52.381 0.00 0.00 0.00 3.01
4140 4575 1.893801 CCCTGTCGTGGTTCTAAGTCT 59.106 52.381 0.00 0.00 0.00 3.24
4141 4576 2.352814 CCCTGTCGTGGTTCTAAGTCTG 60.353 54.545 0.00 0.00 0.00 3.51
4142 4577 2.557056 CCTGTCGTGGTTCTAAGTCTGA 59.443 50.000 0.00 0.00 0.00 3.27
4143 4578 3.566523 CTGTCGTGGTTCTAAGTCTGAC 58.433 50.000 0.00 0.00 0.00 3.51
4144 4579 2.953648 TGTCGTGGTTCTAAGTCTGACA 59.046 45.455 10.88 0.00 33.14 3.58
4145 4580 3.004419 TGTCGTGGTTCTAAGTCTGACAG 59.996 47.826 10.88 0.00 31.99 3.51
4146 4581 3.004524 GTCGTGGTTCTAAGTCTGACAGT 59.995 47.826 10.88 0.00 0.00 3.55
4147 4582 4.214971 GTCGTGGTTCTAAGTCTGACAGTA 59.785 45.833 10.88 1.08 0.00 2.74
4148 4583 4.454847 TCGTGGTTCTAAGTCTGACAGTAG 59.545 45.833 10.88 10.72 0.00 2.57
4149 4584 4.454847 CGTGGTTCTAAGTCTGACAGTAGA 59.545 45.833 10.88 12.74 0.00 2.59
4150 4585 5.048921 CGTGGTTCTAAGTCTGACAGTAGAA 60.049 44.000 20.87 20.87 31.72 2.10
4151 4586 6.349445 CGTGGTTCTAAGTCTGACAGTAGAAT 60.349 42.308 24.52 0.00 35.60 2.40
4152 4587 7.148289 CGTGGTTCTAAGTCTGACAGTAGAATA 60.148 40.741 24.52 18.00 35.60 1.75
4153 4588 8.185505 GTGGTTCTAAGTCTGACAGTAGAATAG 58.814 40.741 24.52 11.16 35.60 1.73
4154 4589 7.339721 TGGTTCTAAGTCTGACAGTAGAATAGG 59.660 40.741 24.52 3.54 35.60 2.57
4155 4590 7.201839 GGTTCTAAGTCTGACAGTAGAATAGGG 60.202 44.444 24.52 3.03 35.60 3.53
4156 4591 6.366340 TCTAAGTCTGACAGTAGAATAGGGG 58.634 44.000 10.88 0.00 0.00 4.79
4157 4592 3.917300 AGTCTGACAGTAGAATAGGGGG 58.083 50.000 10.88 0.00 0.00 5.40
4158 4593 3.272551 AGTCTGACAGTAGAATAGGGGGT 59.727 47.826 10.88 0.00 0.00 4.95
4159 4594 4.481280 AGTCTGACAGTAGAATAGGGGGTA 59.519 45.833 10.88 0.00 0.00 3.69
4160 4595 4.828387 GTCTGACAGTAGAATAGGGGGTAG 59.172 50.000 2.24 0.00 0.00 3.18
4161 4596 4.140994 TCTGACAGTAGAATAGGGGGTAGG 60.141 50.000 1.59 0.00 0.00 3.18
4162 4597 3.534747 TGACAGTAGAATAGGGGGTAGGT 59.465 47.826 0.00 0.00 0.00 3.08
4163 4598 4.733472 TGACAGTAGAATAGGGGGTAGGTA 59.267 45.833 0.00 0.00 0.00 3.08
4164 4599 5.377769 TGACAGTAGAATAGGGGGTAGGTAT 59.622 44.000 0.00 0.00 0.00 2.73
4165 4600 5.652324 ACAGTAGAATAGGGGGTAGGTATG 58.348 45.833 0.00 0.00 0.00 2.39
4166 4601 5.377769 ACAGTAGAATAGGGGGTAGGTATGA 59.622 44.000 0.00 0.00 0.00 2.15
4167 4602 6.125681 ACAGTAGAATAGGGGGTAGGTATGAA 60.126 42.308 0.00 0.00 0.00 2.57
4168 4603 6.437793 CAGTAGAATAGGGGGTAGGTATGAAG 59.562 46.154 0.00 0.00 0.00 3.02
4169 4604 5.698369 AGAATAGGGGGTAGGTATGAAGA 57.302 43.478 0.00 0.00 0.00 2.87
4170 4605 5.656420 AGAATAGGGGGTAGGTATGAAGAG 58.344 45.833 0.00 0.00 0.00 2.85
4171 4606 2.797285 AGGGGGTAGGTATGAAGAGG 57.203 55.000 0.00 0.00 0.00 3.69
4172 4607 1.057471 GGGGGTAGGTATGAAGAGGC 58.943 60.000 0.00 0.00 0.00 4.70
4173 4608 1.694693 GGGGGTAGGTATGAAGAGGCA 60.695 57.143 0.00 0.00 0.00 4.75
4174 4609 2.124411 GGGGTAGGTATGAAGAGGCAA 58.876 52.381 0.00 0.00 0.00 4.52
4175 4610 2.104963 GGGGTAGGTATGAAGAGGCAAG 59.895 54.545 0.00 0.00 0.00 4.01
4176 4611 3.039011 GGGTAGGTATGAAGAGGCAAGA 58.961 50.000 0.00 0.00 0.00 3.02
4177 4612 3.648545 GGGTAGGTATGAAGAGGCAAGAT 59.351 47.826 0.00 0.00 0.00 2.40
4178 4613 4.262678 GGGTAGGTATGAAGAGGCAAGATC 60.263 50.000 0.00 0.00 0.00 2.75
4179 4614 4.262678 GGTAGGTATGAAGAGGCAAGATCC 60.263 50.000 0.00 0.00 0.00 3.36
4180 4615 3.663198 AGGTATGAAGAGGCAAGATCCT 58.337 45.455 0.00 0.00 39.67 3.24
4181 4616 4.820775 AGGTATGAAGAGGCAAGATCCTA 58.179 43.478 0.00 0.00 36.38 2.94
4182 4617 4.837860 AGGTATGAAGAGGCAAGATCCTAG 59.162 45.833 0.00 0.00 36.38 3.02
4183 4618 3.767902 ATGAAGAGGCAAGATCCTAGC 57.232 47.619 0.00 0.00 36.38 3.42
4184 4619 2.756907 TGAAGAGGCAAGATCCTAGCT 58.243 47.619 0.00 0.00 36.38 3.32
4185 4620 3.916035 TGAAGAGGCAAGATCCTAGCTA 58.084 45.455 0.00 0.00 36.38 3.32
4186 4621 4.487804 TGAAGAGGCAAGATCCTAGCTAT 58.512 43.478 0.00 0.00 36.38 2.97
4187 4622 4.282957 TGAAGAGGCAAGATCCTAGCTATG 59.717 45.833 0.00 0.00 36.38 2.23
4188 4623 3.172339 AGAGGCAAGATCCTAGCTATGG 58.828 50.000 0.00 0.00 36.38 2.74
4189 4624 3.169099 GAGGCAAGATCCTAGCTATGGA 58.831 50.000 12.51 12.51 36.38 3.41
4190 4625 3.172339 AGGCAAGATCCTAGCTATGGAG 58.828 50.000 14.62 5.47 36.99 3.86
4191 4626 6.421293 GAGGCAAGATCCTAGCTATGGAGC 62.421 54.167 15.53 15.53 42.22 4.70
4215 4650 3.493272 TTGTGCACACAAGTGTTTTACG 58.507 40.909 21.56 0.00 45.42 3.18
4216 4651 3.188667 TTGTGCACACAAGTGTTTTACGA 59.811 39.130 21.56 0.00 45.42 3.43
4217 4652 4.670478 TTGTGCACACAAGTGTTTTACGAG 60.670 41.667 21.56 0.00 45.42 4.18
4218 4653 7.044025 TTGTGCACACAAGTGTTTTACGAGT 62.044 40.000 21.56 0.00 45.42 4.18
4219 4654 8.431537 TTGTGCACACAAGTGTTTTACGAGTT 62.432 38.462 21.56 0.00 45.42 3.01
4221 4656 5.211266 CACACAAGTGTTTTACGAGTTCA 57.789 39.130 2.55 0.00 42.83 3.18
4222 4657 5.255596 CACACAAGTGTTTTACGAGTTCAG 58.744 41.667 2.55 0.00 42.83 3.02
4223 4658 4.331717 ACACAAGTGTTTTACGAGTTCAGG 59.668 41.667 0.00 0.00 41.83 3.86
4224 4659 3.311596 ACAAGTGTTTTACGAGTTCAGGC 59.688 43.478 0.00 0.00 0.00 4.85
4225 4660 2.490991 AGTGTTTTACGAGTTCAGGCC 58.509 47.619 0.00 0.00 0.00 5.19
4226 4661 1.534163 GTGTTTTACGAGTTCAGGCCC 59.466 52.381 0.00 0.00 0.00 5.80
4227 4662 1.418637 TGTTTTACGAGTTCAGGCCCT 59.581 47.619 0.00 0.00 0.00 5.19
4228 4663 2.158726 TGTTTTACGAGTTCAGGCCCTT 60.159 45.455 0.00 0.00 0.00 3.95
4229 4664 2.467566 TTTACGAGTTCAGGCCCTTC 57.532 50.000 0.00 0.00 0.00 3.46
4230 4665 1.640917 TTACGAGTTCAGGCCCTTCT 58.359 50.000 0.00 0.00 0.00 2.85
4231 4666 1.183549 TACGAGTTCAGGCCCTTCTC 58.816 55.000 0.00 1.73 0.00 2.87
4232 4667 1.153745 CGAGTTCAGGCCCTTCTCG 60.154 63.158 17.87 17.87 41.02 4.04
4233 4668 1.219393 GAGTTCAGGCCCTTCTCGG 59.781 63.158 0.00 0.00 0.00 4.63
4234 4669 1.229209 AGTTCAGGCCCTTCTCGGA 60.229 57.895 0.00 0.00 33.16 4.55
4235 4670 1.219393 GTTCAGGCCCTTCTCGGAG 59.781 63.158 0.00 0.00 33.16 4.63
4236 4671 1.990060 TTCAGGCCCTTCTCGGAGG 60.990 63.158 0.00 0.00 36.52 4.30
4237 4672 2.364317 CAGGCCCTTCTCGGAGGA 60.364 66.667 0.00 0.00 39.25 3.71
4238 4673 1.990060 CAGGCCCTTCTCGGAGGAA 60.990 63.158 0.00 0.00 39.25 3.36
4239 4674 1.687493 AGGCCCTTCTCGGAGGAAG 60.687 63.158 0.00 7.54 39.25 3.46
4240 4675 1.990614 GGCCCTTCTCGGAGGAAGT 60.991 63.158 4.96 0.00 40.56 3.01
4241 4676 0.686769 GGCCCTTCTCGGAGGAAGTA 60.687 60.000 4.96 0.00 40.56 2.24
4242 4677 1.192428 GCCCTTCTCGGAGGAAGTAA 58.808 55.000 4.96 0.00 40.56 2.24
4243 4678 1.134759 GCCCTTCTCGGAGGAAGTAAC 60.135 57.143 4.96 0.00 40.56 2.50
4244 4679 2.176889 CCCTTCTCGGAGGAAGTAACA 58.823 52.381 4.96 0.00 40.56 2.41
4245 4680 2.166664 CCCTTCTCGGAGGAAGTAACAG 59.833 54.545 4.96 0.00 40.56 3.16
4246 4681 2.417515 CCTTCTCGGAGGAAGTAACAGC 60.418 54.545 4.96 0.00 40.56 4.40
4247 4682 1.183549 TCTCGGAGGAAGTAACAGCC 58.816 55.000 4.96 0.00 0.00 4.85
4248 4683 0.175989 CTCGGAGGAAGTAACAGCCC 59.824 60.000 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
156 162 1.736645 CGCGACTGTAACCACCAGG 60.737 63.158 0.00 0.00 42.21 4.45
246 259 2.290464 ACTCGAGATCGTTAGGTGGAG 58.710 52.381 21.68 0.00 40.80 3.86
376 397 2.900337 TCGCGATCGAGCCAGCTA 60.900 61.111 21.57 0.00 40.21 3.32
409 430 2.499685 GGGGTGTTCGCTCGCTAT 59.500 61.111 0.00 0.00 0.00 2.97
417 438 4.619227 AGGCACACGGGGTGTTCG 62.619 66.667 12.67 0.00 45.08 3.95
494 521 0.915364 AGAAGAGATGCCCCTCAACC 59.085 55.000 5.43 0.00 35.68 3.77
651 679 1.202758 TGGCCAAGTCAATCAAGACGT 60.203 47.619 0.61 0.00 43.24 4.34
710 738 2.426024 CAGATCGGAGAACGGGTAAGAA 59.574 50.000 0.00 0.00 43.58 2.52
747 775 4.077188 GAGCACGTCACAAGCGCC 62.077 66.667 2.29 0.00 0.00 6.53
867 895 1.060729 TGCAACAACCACCTAGGCTA 58.939 50.000 9.30 0.00 43.14 3.93
868 896 0.405585 ATGCAACAACCACCTAGGCT 59.594 50.000 9.30 0.00 43.14 4.58
870 898 3.009723 CAGTATGCAACAACCACCTAGG 58.990 50.000 7.41 7.41 45.67 3.02
871 899 3.009723 CCAGTATGCAACAACCACCTAG 58.990 50.000 0.00 0.00 31.97 3.02
872 900 2.373836 ACCAGTATGCAACAACCACCTA 59.626 45.455 0.00 0.00 31.97 3.08
873 901 1.144913 ACCAGTATGCAACAACCACCT 59.855 47.619 0.00 0.00 31.97 4.00
874 902 1.539827 GACCAGTATGCAACAACCACC 59.460 52.381 0.00 0.00 31.97 4.61
877 905 2.159627 CGAAGACCAGTATGCAACAACC 59.840 50.000 0.00 0.00 31.97 3.77
1134 1164 3.710209 AGAGGAAACAATAGCAGCACT 57.290 42.857 0.00 0.00 0.00 4.40
1178 1208 7.450903 ACAAGTACTATAACAGGTTTCAGCTT 58.549 34.615 0.00 0.00 0.00 3.74
1368 1400 8.491152 CCTATAATTGTCTCTAGCAAACAATCG 58.509 37.037 13.90 6.82 41.47 3.34
1403 1435 3.368116 CGGGACACCTCGACTTTCTAATT 60.368 47.826 0.00 0.00 33.28 1.40
1404 1436 2.165845 CGGGACACCTCGACTTTCTAAT 59.834 50.000 0.00 0.00 33.28 1.73
1405 1437 1.542915 CGGGACACCTCGACTTTCTAA 59.457 52.381 0.00 0.00 33.28 2.10
1408 1440 0.388263 GACGGGACACCTCGACTTTC 60.388 60.000 0.00 0.00 33.28 2.62
1409 1441 0.826672 AGACGGGACACCTCGACTTT 60.827 55.000 0.00 0.00 33.28 2.66
1410 1442 1.228490 AGACGGGACACCTCGACTT 60.228 57.895 0.00 0.00 33.28 3.01
1411 1443 1.972223 CAGACGGGACACCTCGACT 60.972 63.158 0.00 0.00 33.28 4.18
1412 1444 0.957395 TACAGACGGGACACCTCGAC 60.957 60.000 0.00 0.00 33.28 4.20
1414 1446 0.599558 TTTACAGACGGGACACCTCG 59.400 55.000 0.00 0.00 33.28 4.63
1424 1461 8.029642 ACAAATATGGAGAAACTTTACAGACG 57.970 34.615 0.00 0.00 0.00 4.18
1580 1625 6.538742 TGACTTTGAACGAACAATCTCTCTTT 59.461 34.615 0.00 0.00 0.00 2.52
1591 1636 3.042887 GTGGCATTGACTTTGAACGAAC 58.957 45.455 0.00 0.00 0.00 3.95
1640 1685 4.518217 CAGTAACTCGTGCAACTGAAAAG 58.482 43.478 8.01 0.00 41.47 2.27
1706 1751 6.959639 ATTTGTACAAGGTGAGTGAACATT 57.040 33.333 8.56 0.00 0.00 2.71
1712 1757 8.397906 CCATACATAATTTGTACAAGGTGAGTG 58.602 37.037 8.56 7.19 43.46 3.51
1716 1761 9.950680 GATTCCATACATAATTTGTACAAGGTG 57.049 33.333 8.56 8.78 43.46 4.00
2033 2161 6.042638 ACAGAGCAGAGAAGCACTAAAATA 57.957 37.500 0.00 0.00 33.62 1.40
2034 2162 4.904241 ACAGAGCAGAGAAGCACTAAAAT 58.096 39.130 0.00 0.00 33.62 1.82
2036 2164 3.321968 TGACAGAGCAGAGAAGCACTAAA 59.678 43.478 0.00 0.00 33.62 1.85
2037 2165 2.893489 TGACAGAGCAGAGAAGCACTAA 59.107 45.455 0.00 0.00 33.62 2.24
2038 2166 2.491298 CTGACAGAGCAGAGAAGCACTA 59.509 50.000 0.00 0.00 38.14 2.74
2042 2170 2.453983 AACTGACAGAGCAGAGAAGC 57.546 50.000 10.08 0.00 39.20 3.86
2104 2232 6.643770 ACTATGAAAGTCATGCAAAAAGCAAG 59.356 34.615 0.00 0.00 46.97 4.01
2149 2277 7.630297 GCTCTGAGAGATTAGACATCTGAAACA 60.630 40.741 14.78 0.00 0.00 2.83
2153 2281 4.826733 GGCTCTGAGAGATTAGACATCTGA 59.173 45.833 14.78 0.00 0.00 3.27
2196 2324 2.303022 TCCAAGCTCCAGTTTTCTCGAT 59.697 45.455 0.00 0.00 0.00 3.59
2238 2366 2.906182 TAGACCGAAGCATGGCGCAG 62.906 60.000 10.83 0.00 46.13 5.18
2246 2374 0.249120 CCACACCATAGACCGAAGCA 59.751 55.000 0.00 0.00 0.00 3.91
2252 2380 0.745845 CAGCAGCCACACCATAGACC 60.746 60.000 0.00 0.00 0.00 3.85
2585 2713 0.688418 ATGATGGGCATGGTTGGTGG 60.688 55.000 0.00 0.00 35.42 4.61
2663 2791 3.007940 CAGTCAGGGTGAACTGGTTATCA 59.992 47.826 0.00 0.00 38.98 2.15
2699 2827 3.380004 ACATGCTCGCTAGATAGGCTATC 59.620 47.826 23.97 23.97 35.41 2.08
2819 2947 3.652869 CCATTATAAGGAGCTCAAGGGGA 59.347 47.826 17.19 0.00 0.00 4.81
2963 3091 3.329542 GATGGCCCGTCTGCAGGAA 62.330 63.158 15.13 0.00 0.00 3.36
3089 3217 3.695556 CACCACCAGACATGCATATCAAA 59.304 43.478 7.88 0.00 0.00 2.69
3129 3257 2.736531 CACCTTGGGCTTTGTGGC 59.263 61.111 0.00 0.00 40.96 5.01
3288 3419 6.458478 GCATGTTCAAGATTTCTCATCTGAGG 60.458 42.308 7.33 0.00 42.30 3.86
3561 3695 8.967918 ACTGATGAATGATGATGTCAGAAATTT 58.032 29.630 7.14 0.00 40.92 1.82
3562 3696 8.521170 ACTGATGAATGATGATGTCAGAAATT 57.479 30.769 7.14 0.00 40.92 1.82
3563 3697 9.794719 ATACTGATGAATGATGATGTCAGAAAT 57.205 29.630 7.14 0.00 40.92 2.17
3572 3706 7.816513 CCGTGACTAATACTGATGAATGATGAT 59.183 37.037 0.00 0.00 0.00 2.45
3573 3707 7.147976 CCGTGACTAATACTGATGAATGATGA 58.852 38.462 0.00 0.00 0.00 2.92
3574 3708 6.925718 ACCGTGACTAATACTGATGAATGATG 59.074 38.462 0.00 0.00 0.00 3.07
3575 3709 7.055667 ACCGTGACTAATACTGATGAATGAT 57.944 36.000 0.00 0.00 0.00 2.45
3576 3710 6.465439 ACCGTGACTAATACTGATGAATGA 57.535 37.500 0.00 0.00 0.00 2.57
3577 3711 6.756542 TGAACCGTGACTAATACTGATGAATG 59.243 38.462 0.00 0.00 0.00 2.67
3578 3712 6.873997 TGAACCGTGACTAATACTGATGAAT 58.126 36.000 0.00 0.00 0.00 2.57
3596 3730 6.982852 AGTACATCTACCTATTCATGAACCG 58.017 40.000 11.07 4.57 0.00 4.44
3615 3749 2.579207 GCATAAGGCGTCAGAGTACA 57.421 50.000 0.00 0.00 0.00 2.90
3616 3750 7.620458 AGACTTGCATAAGGCGTCAGAGTAC 62.620 48.000 0.00 0.00 46.99 2.73
3738 4089 2.360350 GCAAGGTGGCTAGCAGCA 60.360 61.111 18.24 2.93 44.75 4.41
3775 4126 0.320374 ACTCCGACATTTGGCTCGAA 59.680 50.000 0.00 0.00 31.24 3.71
3791 4142 5.317808 TGGCAGTCCTCTATCTATGTACTC 58.682 45.833 0.00 0.00 0.00 2.59
3907 4262 0.804989 CGATCTGCCACCCTTTTGAC 59.195 55.000 0.00 0.00 0.00 3.18
3963 4398 5.069914 ACATGCAATATGCTTCAATGTGGAT 59.930 36.000 3.78 0.00 45.31 3.41
4002 4437 1.304464 GCACCCTAGCTTGCCCTTT 60.304 57.895 0.00 0.00 32.21 3.11
4013 4448 1.272807 ACTTTTCGCCTAGCACCCTA 58.727 50.000 0.00 0.00 0.00 3.53
4014 4449 0.400594 AACTTTTCGCCTAGCACCCT 59.599 50.000 0.00 0.00 0.00 4.34
4015 4450 1.199327 GAAACTTTTCGCCTAGCACCC 59.801 52.381 0.00 0.00 0.00 4.61
4016 4451 2.613730 GAAACTTTTCGCCTAGCACC 57.386 50.000 0.00 0.00 0.00 5.01
4032 4467 0.392998 GAGCCCATCTCCAAGCGAAA 60.393 55.000 0.00 0.00 35.77 3.46
4066 4501 1.737793 CATCTCACCCAAGCGGTTTAC 59.262 52.381 0.00 0.00 45.36 2.01
4119 4554 1.891150 GACTTAGAACCACGACAGGGA 59.109 52.381 0.00 0.00 0.00 4.20
4120 4555 1.893801 AGACTTAGAACCACGACAGGG 59.106 52.381 0.00 0.00 0.00 4.45
4121 4556 2.557056 TCAGACTTAGAACCACGACAGG 59.443 50.000 0.00 0.00 0.00 4.00
4122 4557 3.004419 TGTCAGACTTAGAACCACGACAG 59.996 47.826 1.31 0.00 0.00 3.51
4123 4558 2.953648 TGTCAGACTTAGAACCACGACA 59.046 45.455 1.31 0.00 0.00 4.35
4124 4559 3.004524 ACTGTCAGACTTAGAACCACGAC 59.995 47.826 6.91 0.00 0.00 4.34
4125 4560 3.220110 ACTGTCAGACTTAGAACCACGA 58.780 45.455 6.91 0.00 0.00 4.35
4126 4561 3.644884 ACTGTCAGACTTAGAACCACG 57.355 47.619 6.91 0.00 0.00 4.94
4127 4562 5.961396 TCTACTGTCAGACTTAGAACCAC 57.039 43.478 6.91 0.00 0.00 4.16
4128 4563 7.339721 CCTATTCTACTGTCAGACTTAGAACCA 59.660 40.741 19.62 13.16 34.27 3.67
4129 4564 7.201839 CCCTATTCTACTGTCAGACTTAGAACC 60.202 44.444 19.62 0.00 34.27 3.62
4130 4565 7.201839 CCCCTATTCTACTGTCAGACTTAGAAC 60.202 44.444 19.62 0.00 34.27 3.01
4131 4566 6.834451 CCCCTATTCTACTGTCAGACTTAGAA 59.166 42.308 19.56 19.56 35.55 2.10
4132 4567 6.366340 CCCCTATTCTACTGTCAGACTTAGA 58.634 44.000 6.91 5.38 0.00 2.10
4133 4568 5.536916 CCCCCTATTCTACTGTCAGACTTAG 59.463 48.000 6.91 3.09 0.00 2.18
4134 4569 5.043582 ACCCCCTATTCTACTGTCAGACTTA 60.044 44.000 6.91 0.00 0.00 2.24
4135 4570 4.264895 ACCCCCTATTCTACTGTCAGACTT 60.265 45.833 6.91 0.00 0.00 3.01
4136 4571 3.272551 ACCCCCTATTCTACTGTCAGACT 59.727 47.826 6.91 0.00 0.00 3.24
4137 4572 3.644335 ACCCCCTATTCTACTGTCAGAC 58.356 50.000 6.91 0.00 0.00 3.51
4138 4573 4.140994 CCTACCCCCTATTCTACTGTCAGA 60.141 50.000 6.91 0.00 0.00 3.27
4139 4574 4.153411 CCTACCCCCTATTCTACTGTCAG 58.847 52.174 0.00 0.00 0.00 3.51
4140 4575 3.534747 ACCTACCCCCTATTCTACTGTCA 59.465 47.826 0.00 0.00 0.00 3.58
4141 4576 4.196118 ACCTACCCCCTATTCTACTGTC 57.804 50.000 0.00 0.00 0.00 3.51
4142 4577 5.377769 TCATACCTACCCCCTATTCTACTGT 59.622 44.000 0.00 0.00 0.00 3.55
4143 4578 5.900437 TCATACCTACCCCCTATTCTACTG 58.100 45.833 0.00 0.00 0.00 2.74
4144 4579 6.337472 TCTTCATACCTACCCCCTATTCTACT 59.663 42.308 0.00 0.00 0.00 2.57
4145 4580 6.559429 TCTTCATACCTACCCCCTATTCTAC 58.441 44.000 0.00 0.00 0.00 2.59
4146 4581 6.240793 CCTCTTCATACCTACCCCCTATTCTA 60.241 46.154 0.00 0.00 0.00 2.10
4147 4582 5.461317 CCTCTTCATACCTACCCCCTATTCT 60.461 48.000 0.00 0.00 0.00 2.40
4148 4583 4.778427 CCTCTTCATACCTACCCCCTATTC 59.222 50.000 0.00 0.00 0.00 1.75
4149 4584 4.764491 CCTCTTCATACCTACCCCCTATT 58.236 47.826 0.00 0.00 0.00 1.73
4150 4585 3.504343 GCCTCTTCATACCTACCCCCTAT 60.504 52.174 0.00 0.00 0.00 2.57
4151 4586 2.158204 GCCTCTTCATACCTACCCCCTA 60.158 54.545 0.00 0.00 0.00 3.53
4152 4587 1.414685 GCCTCTTCATACCTACCCCCT 60.415 57.143 0.00 0.00 0.00 4.79
4153 4588 1.057471 GCCTCTTCATACCTACCCCC 58.943 60.000 0.00 0.00 0.00 5.40
4154 4589 1.802553 TGCCTCTTCATACCTACCCC 58.197 55.000 0.00 0.00 0.00 4.95
4155 4590 3.039011 TCTTGCCTCTTCATACCTACCC 58.961 50.000 0.00 0.00 0.00 3.69
4156 4591 4.262678 GGATCTTGCCTCTTCATACCTACC 60.263 50.000 0.00 0.00 0.00 3.18
4157 4592 4.591072 AGGATCTTGCCTCTTCATACCTAC 59.409 45.833 0.00 0.00 30.76 3.18
4158 4593 4.820775 AGGATCTTGCCTCTTCATACCTA 58.179 43.478 0.00 0.00 30.76 3.08
4159 4594 3.663198 AGGATCTTGCCTCTTCATACCT 58.337 45.455 0.00 0.00 30.76 3.08
4160 4595 4.562552 GCTAGGATCTTGCCTCTTCATACC 60.563 50.000 0.00 0.00 39.50 2.73
4161 4596 4.283212 AGCTAGGATCTTGCCTCTTCATAC 59.717 45.833 0.00 0.00 39.50 2.39
4162 4597 4.487804 AGCTAGGATCTTGCCTCTTCATA 58.512 43.478 0.00 0.00 39.50 2.15
4163 4598 3.316501 AGCTAGGATCTTGCCTCTTCAT 58.683 45.455 0.00 0.00 39.50 2.57
4164 4599 2.756907 AGCTAGGATCTTGCCTCTTCA 58.243 47.619 0.00 0.00 39.50 3.02
4165 4600 4.322650 CCATAGCTAGGATCTTGCCTCTTC 60.323 50.000 7.04 0.00 39.50 2.87
4166 4601 3.582208 CCATAGCTAGGATCTTGCCTCTT 59.418 47.826 7.04 0.00 39.50 2.85
4167 4602 3.172339 CCATAGCTAGGATCTTGCCTCT 58.828 50.000 7.04 0.00 39.50 3.69
4168 4603 3.169099 TCCATAGCTAGGATCTTGCCTC 58.831 50.000 7.04 0.00 39.50 4.70
4169 4604 3.172339 CTCCATAGCTAGGATCTTGCCT 58.828 50.000 7.04 0.00 42.15 4.75
4170 4605 2.354604 GCTCCATAGCTAGGATCTTGCC 60.355 54.545 7.04 0.00 45.85 4.52
4171 4606 2.971307 GCTCCATAGCTAGGATCTTGC 58.029 52.381 7.04 6.27 45.85 4.01
4183 4618 1.466167 GTGTGCACAACTGCTCCATAG 59.534 52.381 23.59 0.00 44.57 2.23
4184 4619 1.202746 TGTGTGCACAACTGCTCCATA 60.203 47.619 23.59 0.00 44.57 2.74
4185 4620 0.466007 TGTGTGCACAACTGCTCCAT 60.466 50.000 23.59 0.00 44.57 3.41
4186 4621 0.679321 TTGTGTGCACAACTGCTCCA 60.679 50.000 23.59 10.70 45.42 3.86
4187 4622 0.029834 CTTGTGTGCACAACTGCTCC 59.970 55.000 23.59 7.83 45.42 4.70
4188 4623 0.734889 ACTTGTGTGCACAACTGCTC 59.265 50.000 23.59 8.63 45.42 4.26
4189 4624 0.452987 CACTTGTGTGCACAACTGCT 59.547 50.000 23.59 0.00 45.42 4.24
4190 4625 2.948093 CACTTGTGTGCACAACTGC 58.052 52.632 23.59 9.86 45.42 4.40
4200 4635 4.331717 CCTGAACTCGTAAAACACTTGTGT 59.668 41.667 0.00 0.00 0.00 3.72
4201 4636 4.785341 GCCTGAACTCGTAAAACACTTGTG 60.785 45.833 0.00 0.00 0.00 3.33
4202 4637 3.311596 GCCTGAACTCGTAAAACACTTGT 59.688 43.478 0.00 0.00 0.00 3.16
4203 4638 3.303791 GGCCTGAACTCGTAAAACACTTG 60.304 47.826 0.00 0.00 0.00 3.16
4204 4639 2.876550 GGCCTGAACTCGTAAAACACTT 59.123 45.455 0.00 0.00 0.00 3.16
4205 4640 2.490991 GGCCTGAACTCGTAAAACACT 58.509 47.619 0.00 0.00 0.00 3.55
4206 4641 1.534163 GGGCCTGAACTCGTAAAACAC 59.466 52.381 0.84 0.00 0.00 3.32
4207 4642 1.418637 AGGGCCTGAACTCGTAAAACA 59.581 47.619 4.50 0.00 0.00 2.83
4208 4643 2.180432 AGGGCCTGAACTCGTAAAAC 57.820 50.000 4.50 0.00 0.00 2.43
4209 4644 2.370849 AGAAGGGCCTGAACTCGTAAAA 59.629 45.455 6.92 0.00 0.00 1.52
4210 4645 1.975680 AGAAGGGCCTGAACTCGTAAA 59.024 47.619 6.92 0.00 0.00 2.01
4211 4646 1.549170 GAGAAGGGCCTGAACTCGTAA 59.451 52.381 6.92 0.00 0.00 3.18
4212 4647 1.183549 GAGAAGGGCCTGAACTCGTA 58.816 55.000 6.92 0.00 0.00 3.43
4213 4648 1.878656 CGAGAAGGGCCTGAACTCGT 61.879 60.000 31.25 9.99 43.19 4.18
4214 4649 1.153745 CGAGAAGGGCCTGAACTCG 60.154 63.158 29.13 29.13 42.77 4.18
4215 4650 1.219393 CCGAGAAGGGCCTGAACTC 59.781 63.158 6.92 15.44 35.97 3.01
4216 4651 1.229209 TCCGAGAAGGGCCTGAACT 60.229 57.895 6.92 7.41 41.52 3.01
4217 4652 1.219393 CTCCGAGAAGGGCCTGAAC 59.781 63.158 6.92 1.62 41.52 3.18
4218 4653 1.990060 CCTCCGAGAAGGGCCTGAA 60.990 63.158 6.92 0.00 41.52 3.02
4219 4654 2.364317 CCTCCGAGAAGGGCCTGA 60.364 66.667 6.92 0.00 41.52 3.86
4220 4655 1.965754 CTTCCTCCGAGAAGGGCCTG 61.966 65.000 6.92 0.00 39.71 4.85
4221 4656 1.687493 CTTCCTCCGAGAAGGGCCT 60.687 63.158 0.00 0.00 39.71 5.19
4222 4657 0.686769 TACTTCCTCCGAGAAGGGCC 60.687 60.000 0.00 0.00 46.24 5.80
4223 4658 1.134759 GTTACTTCCTCCGAGAAGGGC 60.135 57.143 12.46 0.00 46.24 5.19
4224 4659 2.166664 CTGTTACTTCCTCCGAGAAGGG 59.833 54.545 12.46 0.00 46.24 3.95
4225 4660 2.417515 GCTGTTACTTCCTCCGAGAAGG 60.418 54.545 12.46 4.01 46.24 3.46
4227 4662 1.549170 GGCTGTTACTTCCTCCGAGAA 59.451 52.381 0.00 0.00 0.00 2.87
4228 4663 1.183549 GGCTGTTACTTCCTCCGAGA 58.816 55.000 0.00 0.00 0.00 4.04
4229 4664 0.175989 GGGCTGTTACTTCCTCCGAG 59.824 60.000 0.00 0.00 0.00 4.63
4230 4665 2.283824 GGGCTGTTACTTCCTCCGA 58.716 57.895 0.00 0.00 0.00 4.55
4231 4666 4.934989 GGGCTGTTACTTCCTCCG 57.065 61.111 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.