Multiple sequence alignment - TraesCS4B01G245500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G245500 chr4B 100.000 7806 0 0 1 7806 507361568 507369373 0.000000e+00 14416.0
1 TraesCS4B01G245500 chr4B 97.110 173 3 2 389 561 592024400 592024230 2.760000e-74 291.0
2 TraesCS4B01G245500 chr4B 96.532 173 4 2 389 561 592148115 592147945 1.280000e-72 285.0
3 TraesCS4B01G245500 chr4B 79.518 249 29 12 95 329 565204533 565204773 2.920000e-34 158.0
4 TraesCS4B01G245500 chr4A 96.714 5113 115 20 848 5927 80146002 80140910 0.000000e+00 8462.0
5 TraesCS4B01G245500 chr4A 97.883 992 14 3 5894 6884 80140910 80139925 0.000000e+00 1709.0
6 TraesCS4B01G245500 chr4A 90.500 200 5 2 555 740 80146516 80146317 1.300000e-62 252.0
7 TraesCS4B01G245500 chr4A 93.333 165 11 0 3905 4069 252243900 252243736 2.180000e-60 244.0
8 TraesCS4B01G245500 chr4A 81.308 321 33 18 3225 3521 715637020 715637337 1.310000e-57 235.0
9 TraesCS4B01G245500 chr4A 81.308 321 33 18 3225 3521 715917379 715917062 1.310000e-57 235.0
10 TraesCS4B01G245500 chr4A 85.333 225 17 7 7158 7368 604718301 604718523 1.320000e-52 219.0
11 TraesCS4B01G245500 chr4A 96.000 125 3 1 739 861 80146148 80146024 1.330000e-47 202.0
12 TraesCS4B01G245500 chr4A 95.455 88 4 0 6992 7079 80137378 80137291 2.940000e-29 141.0
13 TraesCS4B01G245500 chr4A 86.567 67 8 1 276 341 670006459 670006393 1.090000e-08 73.1
14 TraesCS4B01G245500 chr4A 95.349 43 2 0 7082 7124 80137300 80137258 1.410000e-07 69.4
15 TraesCS4B01G245500 chr4D 98.225 3267 45 6 3661 6923 408572913 408569656 0.000000e+00 5699.0
16 TraesCS4B01G245500 chr4D 97.866 2437 35 6 1233 3663 408577561 408575136 0.000000e+00 4196.0
17 TraesCS4B01G245500 chr4D 83.505 776 52 26 6935 7674 408569620 408568885 0.000000e+00 654.0
18 TraesCS4B01G245500 chr4D 90.062 322 13 7 555 859 408580209 408579890 4.390000e-107 399.0
19 TraesCS4B01G245500 chr4D 97.044 203 3 1 903 1105 408578288 408578089 9.700000e-89 339.0
20 TraesCS4B01G245500 chr4D 82.872 397 41 15 15 392 408580596 408580208 1.620000e-86 331.0
21 TraesCS4B01G245500 chr4D 95.977 174 5 2 391 564 75782217 75782046 1.660000e-71 281.0
22 TraesCS4B01G245500 chr4D 93.373 166 8 1 3902 4067 319254356 319254518 7.830000e-60 243.0
23 TraesCS4B01G245500 chr4D 79.592 245 34 10 96 329 12969424 12969185 2.250000e-35 161.0
24 TraesCS4B01G245500 chr4D 92.784 97 7 0 7710 7806 408563934 408563838 2.940000e-29 141.0
25 TraesCS4B01G245500 chr4D 82.558 172 12 7 95 252 400891446 400891613 1.370000e-27 135.0
26 TraesCS4B01G245500 chr5A 90.000 2910 214 44 4065 6921 78153052 78155937 0.000000e+00 3690.0
27 TraesCS4B01G245500 chr5A 91.093 1729 112 21 958 2662 78144496 78146206 0.000000e+00 2302.0
28 TraesCS4B01G245500 chr5A 86.429 899 83 27 2741 3616 78146223 78147105 0.000000e+00 948.0
29 TraesCS4B01G245500 chr5A 80.604 629 67 27 7158 7764 675564713 675565308 1.200000e-117 435.0
30 TraesCS4B01G245500 chr5A 85.714 294 33 4 3613 3906 78152766 78153050 1.270000e-77 302.0
31 TraesCS4B01G245500 chr5A 95.480 177 7 1 381 557 651496996 651496821 1.660000e-71 281.0
32 TraesCS4B01G245500 chr5D 89.628 2902 233 41 4065 6921 82182780 82185658 0.000000e+00 3629.0
33 TraesCS4B01G245500 chr5D 91.652 1713 103 18 958 2647 82179797 82181492 0.000000e+00 2335.0
34 TraesCS4B01G245500 chr5D 86.661 1222 114 31 2697 3902 82181589 82182777 0.000000e+00 1308.0
35 TraesCS4B01G245500 chr5D 95.732 164 7 0 3904 4067 198954906 198955069 1.670000e-66 265.0
36 TraesCS4B01G245500 chr5D 83.333 144 12 3 95 226 445703140 445703283 1.060000e-23 122.0
37 TraesCS4B01G245500 chr5B 89.332 2906 230 44 4065 6919 90502562 90505438 0.000000e+00 3576.0
38 TraesCS4B01G245500 chr5B 91.257 1727 109 19 958 2662 90499804 90501510 0.000000e+00 2314.0
39 TraesCS4B01G245500 chr5B 87.714 700 63 14 3215 3902 90501871 90502559 0.000000e+00 795.0
40 TraesCS4B01G245500 chr5B 87.328 363 35 8 2702 3063 90501515 90501867 9.430000e-109 405.0
41 TraesCS4B01G245500 chr5B 92.638 163 12 0 3904 4066 394970147 394970309 1.310000e-57 235.0
42 TraesCS4B01G245500 chr5B 81.855 248 31 8 94 329 511393273 511393028 6.180000e-46 196.0
43 TraesCS4B01G245500 chr5B 80.233 258 33 10 7159 7402 678295603 678295856 2.240000e-40 178.0
44 TraesCS4B01G245500 chr5B 78.700 277 38 14 71 331 620003867 620003596 1.740000e-36 165.0
45 TraesCS4B01G245500 chr5B 87.591 137 14 2 3388 3521 681001412 681001276 1.050000e-33 156.0
46 TraesCS4B01G245500 chr2A 79.795 683 65 34 7158 7806 775300859 775300216 5.600000e-116 429.0
47 TraesCS4B01G245500 chr2A 94.565 184 9 1 384 567 746756983 746757165 4.610000e-72 283.0
48 TraesCS4B01G245500 chr2A 78.138 247 30 8 3266 3509 67464894 67465119 1.370000e-27 135.0
49 TraesCS4B01G245500 chr2A 97.436 39 1 0 7158 7196 2321146 2321184 5.060000e-07 67.6
50 TraesCS4B01G245500 chr2A 100.000 31 0 0 298 328 187199093 187199123 3.040000e-04 58.4
51 TraesCS4B01G245500 chr2B 82.772 505 59 11 7158 7634 483448283 483448787 7.240000e-115 425.0
52 TraesCS4B01G245500 chr2B 95.977 174 6 1 387 560 594833871 594834043 1.660000e-71 281.0
53 TraesCS4B01G245500 chr2B 93.168 161 11 0 3904 4064 115381524 115381684 3.640000e-58 237.0
54 TraesCS4B01G245500 chr2B 100.000 28 0 0 7082 7109 594185529 594185556 1.400000e-02 52.8
55 TraesCS4B01G245500 chr3D 81.490 416 57 13 1927 2334 477626429 477626832 2.720000e-84 324.0
56 TraesCS4B01G245500 chr3B 97.059 170 3 2 388 557 550322942 550322775 1.280000e-72 285.0
57 TraesCS4B01G245500 chr3B 83.784 185 15 7 95 266 112451008 112450826 2.250000e-35 161.0
58 TraesCS4B01G245500 chr2D 95.506 178 6 2 388 565 516708309 516708484 4.610000e-72 283.0
59 TraesCS4B01G245500 chr2D 84.058 207 20 5 119 315 77671257 77671460 3.720000e-43 187.0
60 TraesCS4B01G245500 chr2D 84.058 207 20 5 119 315 77679003 77679206 3.720000e-43 187.0
61 TraesCS4B01G245500 chr2D 80.242 248 33 10 95 329 480178940 480179184 1.040000e-38 172.0
62 TraesCS4B01G245500 chr2D 75.319 235 43 5 105 329 189842725 189842496 1.790000e-16 99.0
63 TraesCS4B01G245500 chr1D 95.455 176 6 2 387 561 238940384 238940210 5.960000e-71 279.0
64 TraesCS4B01G245500 chr1D 89.655 58 5 1 7022 7079 312965637 312965693 1.090000e-08 73.1
65 TraesCS4B01G245500 chr3A 93.939 165 10 0 3905 4069 513027283 513027119 4.680000e-62 250.0
66 TraesCS4B01G245500 chr1A 94.444 162 9 0 3905 4066 84012547 84012386 4.680000e-62 250.0
67 TraesCS4B01G245500 chr1A 87.591 137 14 2 3388 3521 575198342 575198478 1.050000e-33 156.0
68 TraesCS4B01G245500 chr7A 93.373 166 11 0 3904 4069 435059537 435059372 6.050000e-61 246.0
69 TraesCS4B01G245500 chr7A 93.333 165 11 0 3905 4069 460048616 460048452 2.180000e-60 244.0
70 TraesCS4B01G245500 chr7A 83.770 191 15 9 7160 7336 479575406 479575594 4.840000e-37 167.0
71 TraesCS4B01G245500 chr7A 86.000 150 21 0 1231 1380 580670179 580670030 2.250000e-35 161.0
72 TraesCS4B01G245500 chr7A 93.478 46 3 0 249 294 80728751 80728706 1.410000e-07 69.4
73 TraesCS4B01G245500 chr7A 93.478 46 3 0 249 294 80750980 80750935 1.410000e-07 69.4
74 TraesCS4B01G245500 chr7A 83.077 65 4 6 1 59 9199633 9199570 1.400000e-02 52.8
75 TraesCS4B01G245500 chr1B 93.293 164 10 1 3904 4066 615124151 615123988 2.810000e-59 241.0
76 TraesCS4B01G245500 chr6B 91.228 171 15 0 3904 4074 36133666 36133496 4.710000e-57 233.0
77 TraesCS4B01G245500 chr6D 81.377 247 33 5 95 329 446423764 446424009 1.030000e-43 189.0
78 TraesCS4B01G245500 chrUn 83.173 208 31 4 2724 2930 88801989 88802193 3.720000e-43 187.0
79 TraesCS4B01G245500 chr7D 80.488 246 34 9 95 329 28418073 28418315 8.050000e-40 176.0
80 TraesCS4B01G245500 chr7D 84.667 150 23 0 1231 1380 509929558 509929409 4.880000e-32 150.0
81 TraesCS4B01G245500 chr7B 84.667 150 23 0 1231 1380 538226683 538226534 4.880000e-32 150.0
82 TraesCS4B01G245500 chr7B 80.374 214 27 6 95 295 654170221 654170010 1.750000e-31 148.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G245500 chr4B 507361568 507369373 7805 False 14416.000000 14416 100.000000 1 7806 1 chr4B.!!$F1 7805
1 TraesCS4B01G245500 chr4A 80137258 80146516 9258 True 1805.900000 8462 95.316833 555 7124 6 chr4A.!!$R4 6569
2 TraesCS4B01G245500 chr4D 408568885 408580596 11711 True 1936.333333 5699 91.595667 15 7674 6 chr4D.!!$R4 7659
3 TraesCS4B01G245500 chr5A 78152766 78155937 3171 False 1996.000000 3690 87.857000 3613 6921 2 chr5A.!!$F3 3308
4 TraesCS4B01G245500 chr5A 78144496 78147105 2609 False 1625.000000 2302 88.761000 958 3616 2 chr5A.!!$F2 2658
5 TraesCS4B01G245500 chr5A 675564713 675565308 595 False 435.000000 435 80.604000 7158 7764 1 chr5A.!!$F1 606
6 TraesCS4B01G245500 chr5D 82179797 82185658 5861 False 2424.000000 3629 89.313667 958 6921 3 chr5D.!!$F3 5963
7 TraesCS4B01G245500 chr5B 90499804 90505438 5634 False 1772.500000 3576 88.907750 958 6919 4 chr5B.!!$F3 5961
8 TraesCS4B01G245500 chr2A 775300216 775300859 643 True 429.000000 429 79.795000 7158 7806 1 chr2A.!!$R1 648
9 TraesCS4B01G245500 chr2B 483448283 483448787 504 False 425.000000 425 82.772000 7158 7634 1 chr2B.!!$F2 476

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 302 0.030504 CAACATGCCACTTGTCGCAA 59.969 50.000 0.0 0.00 38.75 4.85 F
292 303 0.030638 AACATGCCACTTGTCGCAAC 59.969 50.000 0.0 0.00 38.75 4.17 F
295 306 0.823356 ATGCCACTTGTCGCAACCTT 60.823 50.000 0.0 0.00 38.75 3.50 F
1133 2897 0.833287 GGCTGTGAGCATCCCTTCTA 59.167 55.000 0.0 0.00 44.75 2.10 F
1354 3517 0.979665 CCTTGGAGGAGAAGTGCTCA 59.020 55.000 0.0 0.00 45.81 4.26 F
2796 5062 1.001633 CAAAAGAGGCATTGGCAAGCT 59.998 47.619 13.2 3.91 43.71 3.74 F
3431 5730 4.141251 ACACTACTGGGAACTGGTGAAAAT 60.141 41.667 0.0 0.00 0.00 1.82 F
4303 8852 5.067023 GGCCTGATTCAAATTACTCTGAAGG 59.933 44.000 0.0 0.00 35.14 3.46 F
5628 10213 8.190122 TGCGTATTTGCATTTTGATAGAAGAAT 58.810 29.630 0.0 0.00 40.62 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1354 3517 0.904865 TGTCGCAGATCTCCTTGGGT 60.905 55.000 0.00 0.00 40.67 4.51 R
1727 3906 1.881973 TGTTCTCTGTGAGCCATTTGC 59.118 47.619 0.00 0.00 41.71 3.68 R
1779 3958 4.697352 GCGGAGATGAATATATGCAAGGTT 59.303 41.667 0.00 0.00 0.00 3.50 R
3119 5413 1.229428 GTGTGCTTGTAGCTCTTGCA 58.771 50.000 0.00 0.00 42.97 4.08 R
3374 5672 8.166422 ACATGACCTGAAAGTTACCTTTAAAG 57.834 34.615 8.32 8.32 40.98 1.85 R
3944 8476 6.798315 TTGCTCCGTATGTAGTCTATAGTC 57.202 41.667 0.00 0.00 0.00 2.59 R
5230 9808 2.680339 GCTCTCCTGTATTCAGCAAACC 59.320 50.000 0.00 0.00 40.09 3.27 R
5707 10292 0.037975 CTTGGCTGCCAGCGAATTTT 60.038 50.000 22.17 0.00 43.62 1.82 R
7609 14776 0.036732 CAGCCACCAGTTTAGGAGCA 59.963 55.000 0.00 0.00 35.08 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.299297 CTGGTTTACTTCTCGTGGAGGT 59.701 50.000 0.00 0.07 37.94 3.85
34 35 3.499338 TGGTTTACTTCTCGTGGAGGTA 58.501 45.455 0.00 0.00 35.78 3.08
36 37 3.509184 GGTTTACTTCTCGTGGAGGTAGT 59.491 47.826 0.00 6.58 37.70 2.73
54 55 0.036306 GTGCCTCTCGGAAAGGGAAA 59.964 55.000 0.00 0.00 35.86 3.13
57 58 1.540267 GCCTCTCGGAAAGGGAAAAAC 59.460 52.381 0.00 0.00 34.26 2.43
58 59 2.858745 CCTCTCGGAAAGGGAAAAACA 58.141 47.619 0.00 0.00 0.00 2.83
59 60 2.552743 CCTCTCGGAAAGGGAAAAACAC 59.447 50.000 0.00 0.00 0.00 3.32
60 61 2.215196 TCTCGGAAAGGGAAAAACACG 58.785 47.619 0.00 0.00 0.00 4.49
61 62 1.944709 CTCGGAAAGGGAAAAACACGT 59.055 47.619 0.00 0.00 0.00 4.49
62 63 1.671845 TCGGAAAGGGAAAAACACGTG 59.328 47.619 15.48 15.48 0.00 4.49
65 66 1.407618 GAAAGGGAAAAACACGTGGCT 59.592 47.619 21.57 3.19 0.00 4.75
67 68 1.480789 AGGGAAAAACACGTGGCTTT 58.519 45.000 21.57 17.60 0.00 3.51
69 70 2.159156 AGGGAAAAACACGTGGCTTTTC 60.159 45.455 30.64 30.64 38.01 2.29
144 155 9.799106 AACCTATCAATATGGGATCTAGTTTTG 57.201 33.333 0.00 0.00 37.20 2.44
150 161 9.784531 TCAATATGGGATCTAGTTTTGAAGATC 57.215 33.333 4.15 4.15 37.15 2.75
153 164 5.907207 TGGGATCTAGTTTTGAAGATCTCG 58.093 41.667 11.05 0.00 40.21 4.04
154 165 5.656859 TGGGATCTAGTTTTGAAGATCTCGA 59.343 40.000 11.05 0.00 40.21 4.04
155 166 6.325028 TGGGATCTAGTTTTGAAGATCTCGAT 59.675 38.462 11.05 0.00 40.21 3.59
177 188 2.723273 GAGGGATCCAACGGTGAAAAT 58.277 47.619 15.23 0.00 0.00 1.82
181 192 2.094752 GGATCCAACGGTGAAAATGGTG 60.095 50.000 6.95 0.00 34.50 4.17
185 196 0.948678 AACGGTGAAAATGGTGGACG 59.051 50.000 0.00 0.00 0.00 4.79
187 198 1.511318 CGGTGAAAATGGTGGACGCA 61.511 55.000 0.00 0.00 0.00 5.24
192 203 0.250381 AAAATGGTGGACGCACGGTA 60.250 50.000 0.00 0.00 0.00 4.02
257 268 2.543031 GGGAAAACTTCGAGGTTGCAAC 60.543 50.000 21.59 21.59 0.00 4.17
265 276 1.363807 GAGGTTGCAACAAGTGGCC 59.636 57.895 29.55 11.68 0.00 5.36
274 285 1.047596 AACAAGTGGCCCACATGCAA 61.048 50.000 18.50 0.00 36.67 4.08
276 287 1.457267 AAGTGGCCCACATGCAACA 60.457 52.632 17.80 0.00 37.66 3.33
277 288 0.832983 AAGTGGCCCACATGCAACAT 60.833 50.000 17.80 0.00 37.66 2.71
278 289 1.079681 GTGGCCCACATGCAACATG 60.080 57.895 9.55 6.03 35.16 3.21
279 290 2.125431 GGCCCACATGCAACATGC 60.125 61.111 7.46 0.00 45.29 4.06
281 292 2.945161 GCCCACATGCAACATGCCA 61.945 57.895 7.46 0.00 44.23 4.92
282 293 1.079681 CCCACATGCAACATGCCAC 60.080 57.895 7.46 0.00 44.23 5.01
284 295 0.319083 CCACATGCAACATGCCACTT 59.681 50.000 7.46 0.00 44.23 3.16
286 297 1.042229 ACATGCAACATGCCACTTGT 58.958 45.000 7.46 0.00 44.23 3.16
287 298 1.000060 ACATGCAACATGCCACTTGTC 60.000 47.619 7.46 0.00 44.23 3.18
288 299 0.241749 ATGCAACATGCCACTTGTCG 59.758 50.000 0.00 0.00 44.23 4.35
290 301 1.653667 CAACATGCCACTTGTCGCA 59.346 52.632 0.00 0.00 39.79 5.10
291 302 0.030504 CAACATGCCACTTGTCGCAA 59.969 50.000 0.00 0.00 38.75 4.85
292 303 0.030638 AACATGCCACTTGTCGCAAC 59.969 50.000 0.00 0.00 38.75 4.17
293 304 1.081242 CATGCCACTTGTCGCAACC 60.081 57.895 0.00 0.00 38.75 3.77
294 305 1.228245 ATGCCACTTGTCGCAACCT 60.228 52.632 0.00 0.00 38.75 3.50
295 306 0.823356 ATGCCACTTGTCGCAACCTT 60.823 50.000 0.00 0.00 38.75 3.50
296 307 1.034838 TGCCACTTGTCGCAACCTTT 61.035 50.000 0.00 0.00 30.46 3.11
317 328 6.294731 CCTTTTAAGGTGGAAGTGATCTTTGG 60.295 42.308 0.15 0.00 41.41 3.28
321 332 3.084786 GGTGGAAGTGATCTTTGGAAGG 58.915 50.000 0.00 0.00 33.64 3.46
329 340 4.158764 AGTGATCTTTGGAAGGAGTACTCG 59.841 45.833 16.56 0.52 0.00 4.18
331 342 3.936372 TCTTTGGAAGGAGTACTCGTG 57.064 47.619 18.27 5.55 0.00 4.35
335 346 4.884668 TTGGAAGGAGTACTCGTGATTT 57.115 40.909 18.27 3.09 0.00 2.17
336 347 4.451629 TGGAAGGAGTACTCGTGATTTC 57.548 45.455 18.27 11.70 0.00 2.17
337 348 3.119602 TGGAAGGAGTACTCGTGATTTCG 60.120 47.826 18.27 0.00 0.00 3.46
340 351 3.087031 AGGAGTACTCGTGATTTCGGAA 58.913 45.455 16.96 0.00 0.00 4.30
341 352 3.508793 AGGAGTACTCGTGATTTCGGAAA 59.491 43.478 16.96 5.52 0.00 3.13
342 353 4.021719 AGGAGTACTCGTGATTTCGGAAAA 60.022 41.667 16.96 0.00 0.00 2.29
344 355 3.992427 AGTACTCGTGATTTCGGAAAACC 59.008 43.478 7.33 3.57 0.00 3.27
345 356 3.121738 ACTCGTGATTTCGGAAAACCT 57.878 42.857 7.33 0.00 0.00 3.50
346 357 3.064931 ACTCGTGATTTCGGAAAACCTC 58.935 45.455 7.33 1.64 0.00 3.85
347 358 2.063266 TCGTGATTTCGGAAAACCTCG 58.937 47.619 7.33 13.63 0.00 4.63
357 375 2.223112 CGGAAAACCTCGCATGATTGAG 60.223 50.000 0.00 0.00 0.00 3.02
408 426 5.565455 TTTTTACTCCCTCCGTTCCTAAA 57.435 39.130 0.00 0.00 0.00 1.85
409 427 5.767277 TTTTACTCCCTCCGTTCCTAAAT 57.233 39.130 0.00 0.00 0.00 1.40
410 428 6.872585 TTTTACTCCCTCCGTTCCTAAATA 57.127 37.500 0.00 0.00 0.00 1.40
411 429 7.441903 TTTTACTCCCTCCGTTCCTAAATAT 57.558 36.000 0.00 0.00 0.00 1.28
412 430 7.441903 TTTACTCCCTCCGTTCCTAAATATT 57.558 36.000 0.00 0.00 0.00 1.28
413 431 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
414 432 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
415 433 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
416 434 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
417 435 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
418 436 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
419 437 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
420 438 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
421 439 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
422 440 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
423 441 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
424 442 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
440 458 8.731275 TCTTTCTAGACATTTTCAACAAGTGA 57.269 30.769 0.00 0.00 0.00 3.41
441 459 8.612619 TCTTTCTAGACATTTTCAACAAGTGAC 58.387 33.333 0.00 0.00 35.39 3.67
442 460 8.506168 TTTCTAGACATTTTCAACAAGTGACT 57.494 30.769 0.00 0.00 35.39 3.41
443 461 9.607988 TTTCTAGACATTTTCAACAAGTGACTA 57.392 29.630 0.00 0.00 35.39 2.59
444 462 8.589335 TCTAGACATTTTCAACAAGTGACTAC 57.411 34.615 0.00 0.00 35.39 2.73
445 463 8.201464 TCTAGACATTTTCAACAAGTGACTACA 58.799 33.333 0.00 0.00 35.39 2.74
446 464 7.807977 AGACATTTTCAACAAGTGACTACAT 57.192 32.000 0.00 0.00 35.39 2.29
447 465 8.902540 AGACATTTTCAACAAGTGACTACATA 57.097 30.769 0.00 0.00 35.39 2.29
448 466 8.774586 AGACATTTTCAACAAGTGACTACATAC 58.225 33.333 0.00 0.00 35.39 2.39
449 467 7.572759 ACATTTTCAACAAGTGACTACATACG 58.427 34.615 0.00 0.00 35.39 3.06
450 468 7.439955 ACATTTTCAACAAGTGACTACATACGA 59.560 33.333 0.00 0.00 35.39 3.43
451 469 7.773864 TTTTCAACAAGTGACTACATACGAA 57.226 32.000 0.00 0.00 35.39 3.85
452 470 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
453 471 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
454 472 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
455 473 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
456 474 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
457 475 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
458 476 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
459 477 7.601130 ACAAGTGACTACATACGAAGCAAAATA 59.399 33.333 0.00 0.00 0.00 1.40
460 478 8.440059 CAAGTGACTACATACGAAGCAAAATAA 58.560 33.333 0.00 0.00 0.00 1.40
461 479 8.186178 AGTGACTACATACGAAGCAAAATAAG 57.814 34.615 0.00 0.00 0.00 1.73
462 480 7.817962 AGTGACTACATACGAAGCAAAATAAGT 59.182 33.333 0.00 0.00 0.00 2.24
463 481 7.898309 GTGACTACATACGAAGCAAAATAAGTG 59.102 37.037 0.00 0.00 0.00 3.16
464 482 7.815549 TGACTACATACGAAGCAAAATAAGTGA 59.184 33.333 0.00 0.00 0.00 3.41
465 483 8.542497 ACTACATACGAAGCAAAATAAGTGAA 57.458 30.769 0.00 0.00 0.00 3.18
466 484 9.162764 ACTACATACGAAGCAAAATAAGTGAAT 57.837 29.630 0.00 0.00 0.00 2.57
467 485 9.638300 CTACATACGAAGCAAAATAAGTGAATC 57.362 33.333 0.00 0.00 0.00 2.52
468 486 8.268850 ACATACGAAGCAAAATAAGTGAATCT 57.731 30.769 0.00 0.00 0.00 2.40
469 487 9.378551 ACATACGAAGCAAAATAAGTGAATCTA 57.621 29.630 0.00 0.00 0.00 1.98
470 488 9.638300 CATACGAAGCAAAATAAGTGAATCTAC 57.362 33.333 0.00 0.00 0.00 2.59
471 489 7.667043 ACGAAGCAAAATAAGTGAATCTACA 57.333 32.000 0.00 0.00 0.00 2.74
472 490 8.268850 ACGAAGCAAAATAAGTGAATCTACAT 57.731 30.769 0.00 0.00 0.00 2.29
473 491 8.730680 ACGAAGCAAAATAAGTGAATCTACATT 58.269 29.630 0.00 0.00 0.00 2.71
474 492 9.214953 CGAAGCAAAATAAGTGAATCTACATTC 57.785 33.333 0.00 0.00 39.24 2.67
505 523 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
507 525 8.502105 TGTCTATATACATCCGTATGTGGTAG 57.498 38.462 3.56 3.93 45.99 3.18
508 526 8.105197 TGTCTATATACATCCGTATGTGGTAGT 58.895 37.037 3.56 0.00 45.99 2.73
509 527 8.610896 GTCTATATACATCCGTATGTGGTAGTC 58.389 40.741 3.56 0.00 45.99 2.59
510 528 6.770746 ATATACATCCGTATGTGGTAGTCC 57.229 41.667 3.56 0.00 45.99 3.85
511 529 2.742348 ACATCCGTATGTGGTAGTCCA 58.258 47.619 0.00 0.00 44.79 4.02
512 530 3.305720 ACATCCGTATGTGGTAGTCCAT 58.694 45.455 0.00 0.00 44.79 3.41
513 531 3.709653 ACATCCGTATGTGGTAGTCCATT 59.290 43.478 0.00 0.00 44.79 3.16
514 532 4.163458 ACATCCGTATGTGGTAGTCCATTT 59.837 41.667 0.00 0.00 44.79 2.32
515 533 4.131649 TCCGTATGTGGTAGTCCATTTG 57.868 45.455 0.00 0.00 46.20 2.32
516 534 3.770388 TCCGTATGTGGTAGTCCATTTGA 59.230 43.478 0.00 0.00 46.20 2.69
517 535 4.223255 TCCGTATGTGGTAGTCCATTTGAA 59.777 41.667 0.00 0.00 46.20 2.69
518 536 4.938832 CCGTATGTGGTAGTCCATTTGAAA 59.061 41.667 0.00 0.00 46.20 2.69
519 537 5.588648 CCGTATGTGGTAGTCCATTTGAAAT 59.411 40.000 0.00 0.00 46.20 2.17
520 538 6.238374 CCGTATGTGGTAGTCCATTTGAAATC 60.238 42.308 0.00 0.00 46.20 2.17
521 539 6.538742 CGTATGTGGTAGTCCATTTGAAATCT 59.461 38.462 0.00 0.00 46.20 2.40
522 540 7.254455 CGTATGTGGTAGTCCATTTGAAATCTC 60.254 40.741 0.00 0.00 46.20 2.75
523 541 6.126863 TGTGGTAGTCCATTTGAAATCTCT 57.873 37.500 0.00 0.00 46.20 3.10
524 542 7.252612 TGTGGTAGTCCATTTGAAATCTCTA 57.747 36.000 0.00 0.00 46.20 2.43
525 543 7.685481 TGTGGTAGTCCATTTGAAATCTCTAA 58.315 34.615 0.00 0.00 46.20 2.10
526 544 8.160765 TGTGGTAGTCCATTTGAAATCTCTAAA 58.839 33.333 0.00 0.00 46.20 1.85
527 545 9.010029 GTGGTAGTCCATTTGAAATCTCTAAAA 57.990 33.333 0.00 0.00 46.20 1.52
528 546 9.581289 TGGTAGTCCATTTGAAATCTCTAAAAA 57.419 29.630 0.00 0.00 39.03 1.94
532 550 9.354673 AGTCCATTTGAAATCTCTAAAAAGACA 57.645 29.630 0.00 0.00 0.00 3.41
533 551 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
550 568 9.908152 AAAAAGACAAATATTTAGAAACGGAGG 57.092 29.630 0.00 0.00 0.00 4.30
551 569 7.625828 AAGACAAATATTTAGAAACGGAGGG 57.374 36.000 0.00 0.00 0.00 4.30
552 570 6.954232 AGACAAATATTTAGAAACGGAGGGA 58.046 36.000 0.00 0.00 0.00 4.20
553 571 7.048512 AGACAAATATTTAGAAACGGAGGGAG 58.951 38.462 0.00 0.00 0.00 4.30
740 773 8.696043 TCCATATGAAACCCTTTGAATCATAG 57.304 34.615 3.65 0.00 36.68 2.23
742 775 9.573166 CCATATGAAACCCTTTGAATCATAGTA 57.427 33.333 3.65 0.00 36.68 1.82
745 778 8.738645 ATGAAACCCTTTGAATCATAGTAGTC 57.261 34.615 0.38 0.00 0.00 2.59
747 780 7.824289 TGAAACCCTTTGAATCATAGTAGTCTG 59.176 37.037 0.38 0.00 0.00 3.51
748 781 6.240549 ACCCTTTGAATCATAGTAGTCTGG 57.759 41.667 0.38 0.00 0.00 3.86
755 960 8.737168 TTGAATCATAGTAGTCTGGAAAATGG 57.263 34.615 0.00 0.00 0.00 3.16
861 1101 2.481276 CGTTCTATTGGATGGAGCACGA 60.481 50.000 0.00 0.00 29.10 4.35
955 2718 3.069586 AGTGACTCACAGAAAACCATCGA 59.930 43.478 11.80 0.00 36.74 3.59
1133 2897 0.833287 GGCTGTGAGCATCCCTTCTA 59.167 55.000 0.00 0.00 44.75 2.10
1354 3517 0.979665 CCTTGGAGGAGAAGTGCTCA 59.020 55.000 0.00 0.00 45.81 4.26
1481 3659 3.650070 TGAATTGCCGCACATACAAAA 57.350 38.095 0.00 0.00 0.00 2.44
1779 3958 2.356741 GGTACAGCTAATTCCTTGCCCA 60.357 50.000 0.00 0.00 0.00 5.36
2372 4551 5.390387 AGTATAAAGACAAGGTTTGGGCAA 58.610 37.500 0.00 0.00 34.12 4.52
2796 5062 1.001633 CAAAAGAGGCATTGGCAAGCT 59.998 47.619 13.20 3.91 43.71 3.74
2869 5137 8.590204 CCAAATAATTTGTAGGGTAGGTTTTGT 58.410 33.333 0.00 0.00 38.98 2.83
2885 5153 9.398538 GTAGGTTTTGTATACCATCCAAACATA 57.601 33.333 0.00 2.23 38.16 2.29
2886 5154 8.288689 AGGTTTTGTATACCATCCAAACATAC 57.711 34.615 0.00 0.00 38.16 2.39
2887 5155 7.340999 AGGTTTTGTATACCATCCAAACATACC 59.659 37.037 0.00 0.00 38.16 2.73
2888 5156 7.417003 GGTTTTGTATACCATCCAAACATACCC 60.417 40.741 0.00 0.00 35.67 3.69
2889 5157 6.584471 TTGTATACCATCCAAACATACCCT 57.416 37.500 0.00 0.00 0.00 4.34
2890 5158 7.693533 TTGTATACCATCCAAACATACCCTA 57.306 36.000 0.00 0.00 0.00 3.53
2891 5159 7.881912 TGTATACCATCCAAACATACCCTAT 57.118 36.000 0.00 0.00 0.00 2.57
2892 5160 8.975925 TGTATACCATCCAAACATACCCTATA 57.024 34.615 0.00 0.00 0.00 1.31
2893 5161 9.569074 TGTATACCATCCAAACATACCCTATAT 57.431 33.333 0.00 0.00 0.00 0.86
2957 5235 5.334421 AGTCAGGACAATAGTACTTCCAGT 58.666 41.667 12.76 2.54 36.55 4.00
3066 5348 5.277974 CGAGTCCTGTGATTGTTTGACATTT 60.278 40.000 0.00 0.00 0.00 2.32
3067 5349 6.073276 CGAGTCCTGTGATTGTTTGACATTTA 60.073 38.462 0.00 0.00 0.00 1.40
3431 5730 4.141251 ACACTACTGGGAACTGGTGAAAAT 60.141 41.667 0.00 0.00 0.00 1.82
4207 8751 7.064134 CGTTATGGCACTCTAGTTTGTTTATCA 59.936 37.037 0.00 0.00 0.00 2.15
4303 8852 5.067023 GGCCTGATTCAAATTACTCTGAAGG 59.933 44.000 0.00 0.00 35.14 3.46
4369 8919 9.319143 CCCTTGATAATAGCTAAATATTCCTCG 57.681 37.037 0.00 0.00 0.00 4.63
5405 9987 8.868522 ATCCTCATTTTCATGTTTCAGAGTTA 57.131 30.769 0.00 0.00 0.00 2.24
5406 9988 8.690203 TCCTCATTTTCATGTTTCAGAGTTAA 57.310 30.769 0.00 0.00 0.00 2.01
5628 10213 8.190122 TGCGTATTTGCATTTTGATAGAAGAAT 58.810 29.630 0.00 0.00 40.62 2.40
5707 10292 2.756760 ACAAGTCGAGGCGTTTAGGATA 59.243 45.455 0.00 0.00 0.00 2.59
5854 10443 2.627945 TGCGTGAATTACATGGGAGAC 58.372 47.619 0.00 0.00 36.16 3.36
6091 10718 6.154363 TCAAAGAAGAAACAATCTGGTGGTTT 59.846 34.615 0.00 0.00 38.79 3.27
6152 10779 5.105473 GCTGGATATTCGTGTAGGGCTTATA 60.105 44.000 0.00 0.00 0.00 0.98
6248 10875 0.889186 CAGTGGTTAGCGGCCTTGTT 60.889 55.000 0.00 0.00 0.00 2.83
6329 10959 2.945008 ACATTGGTATGCTGATTGGTCG 59.055 45.455 0.00 0.00 35.03 4.79
6505 11136 3.005155 GGCTCTCATGTGCTCTTTGTTTT 59.995 43.478 0.00 0.00 33.63 2.43
6506 11137 4.216257 GGCTCTCATGTGCTCTTTGTTTTA 59.784 41.667 0.00 0.00 33.63 1.52
6507 11138 5.105997 GGCTCTCATGTGCTCTTTGTTTTAT 60.106 40.000 0.00 0.00 33.63 1.40
6508 11139 6.094048 GGCTCTCATGTGCTCTTTGTTTTATA 59.906 38.462 0.00 0.00 33.63 0.98
6547 11182 0.815734 TAGTAGCAGCCACTTCGGTC 59.184 55.000 0.00 0.00 36.97 4.79
6928 11869 4.767255 CTCTGCACACCGCCCCTC 62.767 72.222 0.00 0.00 41.33 4.30
6966 11908 1.452108 CAACCTCGGGGGCAATCTC 60.452 63.158 6.13 0.00 39.10 2.75
7025 14114 0.446616 CTTTAGCTCGGCCCGTTTTC 59.553 55.000 1.63 0.00 0.00 2.29
7072 14161 2.629656 CGCTGGCTTCCCAAAGTGG 61.630 63.158 0.00 0.00 41.58 4.00
7073 14162 2.935740 GCTGGCTTCCCAAAGTGGC 61.936 63.158 0.00 0.00 41.58 5.01
7074 14163 2.203625 TGGCTTCCCAAAGTGGCC 60.204 61.111 0.00 0.00 38.46 5.36
7075 14164 2.203625 GGCTTCCCAAAGTGGCCA 60.204 61.111 0.00 0.00 42.08 5.36
7076 14165 2.278330 GGCTTCCCAAAGTGGCCAG 61.278 63.158 5.11 0.00 42.08 4.85
7077 14166 2.935740 GCTTCCCAAAGTGGCCAGC 61.936 63.158 5.11 0.00 35.79 4.85
7078 14167 1.228675 CTTCCCAAAGTGGCCAGCT 60.229 57.895 5.11 3.37 35.79 4.24
7079 14168 1.530013 CTTCCCAAAGTGGCCAGCTG 61.530 60.000 5.11 6.78 35.79 4.24
7080 14169 2.993264 CCCAAAGTGGCCAGCTGG 60.993 66.667 29.34 29.34 35.79 4.85
7081 14170 2.993264 CCAAAGTGGCCAGCTGGG 60.993 66.667 33.46 14.97 40.85 4.45
7082 14171 2.203538 CAAAGTGGCCAGCTGGGT 60.204 61.111 33.46 0.00 39.65 4.51
7083 14172 2.203538 AAAGTGGCCAGCTGGGTG 60.204 61.111 33.46 9.60 39.65 4.61
7128 14217 2.726691 CGTTCGGTAGCAGGCAACG 61.727 63.158 0.00 0.00 46.39 4.10
7129 14218 2.047655 TTCGGTAGCAGGCAACGG 60.048 61.111 0.00 0.00 46.39 4.44
7130 14219 2.575893 TTCGGTAGCAGGCAACGGA 61.576 57.895 0.00 0.00 46.39 4.69
7131 14220 2.501223 TTCGGTAGCAGGCAACGGAG 62.501 60.000 0.00 0.00 46.39 4.63
7132 14221 2.820037 GGTAGCAGGCAACGGAGC 60.820 66.667 0.00 0.00 46.39 4.70
7133 14222 2.047274 GTAGCAGGCAACGGAGCA 60.047 61.111 3.77 0.00 46.39 4.26
7134 14223 1.671054 GTAGCAGGCAACGGAGCAA 60.671 57.895 3.77 0.00 46.39 3.91
7135 14224 1.026718 GTAGCAGGCAACGGAGCAAT 61.027 55.000 3.77 0.00 46.39 3.56
7136 14225 0.322456 TAGCAGGCAACGGAGCAATT 60.322 50.000 3.77 0.00 46.39 2.32
7137 14226 1.181098 AGCAGGCAACGGAGCAATTT 61.181 50.000 3.77 0.00 46.39 1.82
7138 14227 0.733909 GCAGGCAACGGAGCAATTTC 60.734 55.000 3.77 0.00 46.39 2.17
7139 14228 0.597568 CAGGCAACGGAGCAATTTCA 59.402 50.000 3.77 0.00 46.39 2.69
7140 14229 1.000385 CAGGCAACGGAGCAATTTCAA 60.000 47.619 3.77 0.00 46.39 2.69
7141 14230 1.686052 AGGCAACGGAGCAATTTCAAA 59.314 42.857 3.77 0.00 46.39 2.69
7142 14231 2.299867 AGGCAACGGAGCAATTTCAAAT 59.700 40.909 3.77 0.00 46.39 2.32
7143 14232 3.509575 AGGCAACGGAGCAATTTCAAATA 59.490 39.130 3.77 0.00 46.39 1.40
7144 14233 3.612423 GGCAACGGAGCAATTTCAAATAC 59.388 43.478 3.77 0.00 35.83 1.89
7145 14234 3.612423 GCAACGGAGCAATTTCAAATACC 59.388 43.478 0.00 0.00 0.00 2.73
7146 14235 3.757745 ACGGAGCAATTTCAAATACCG 57.242 42.857 12.96 12.96 43.79 4.02
7147 14236 2.159435 ACGGAGCAATTTCAAATACCGC 60.159 45.455 13.90 4.98 42.29 5.68
7148 14237 2.097466 CGGAGCAATTTCAAATACCGCT 59.903 45.455 2.13 2.13 33.24 5.52
7149 14238 3.695816 GGAGCAATTTCAAATACCGCTC 58.304 45.455 15.83 15.83 42.80 5.03
7150 14239 3.128589 GGAGCAATTTCAAATACCGCTCA 59.871 43.478 21.63 0.00 44.77 4.26
7151 14240 4.380444 GGAGCAATTTCAAATACCGCTCAA 60.380 41.667 21.63 0.00 44.77 3.02
7152 14241 5.132897 AGCAATTTCAAATACCGCTCAAA 57.867 34.783 0.00 0.00 0.00 2.69
7153 14242 5.537188 AGCAATTTCAAATACCGCTCAAAA 58.463 33.333 0.00 0.00 0.00 2.44
7154 14243 5.988561 AGCAATTTCAAATACCGCTCAAAAA 59.011 32.000 0.00 0.00 0.00 1.94
7252 14353 4.467198 TCGAAGGTCTAGAATCCAAACC 57.533 45.455 0.00 0.00 0.00 3.27
7283 14390 4.462483 GCTAGTTTCCATCCAAACCAATCA 59.538 41.667 0.00 0.00 37.01 2.57
7336 14443 3.030291 AGTTTGAAACCATGGACAAGCA 58.970 40.909 21.47 6.10 0.00 3.91
7356 14463 1.139163 GGTGTTGGTACGTAACGTGG 58.861 55.000 6.07 0.00 41.39 4.94
7359 14466 1.680735 TGTTGGTACGTAACGTGGAGT 59.319 47.619 6.07 0.00 41.39 3.85
7383 14490 3.381983 TCATCTGCGTGGCCGTCT 61.382 61.111 0.00 0.00 36.15 4.18
7402 14509 1.929836 CTGTGCGCTTAATGGAGAGAC 59.070 52.381 9.73 0.00 0.00 3.36
7403 14510 1.291132 GTGCGCTTAATGGAGAGACC 58.709 55.000 9.73 0.00 39.54 3.85
7439 14575 2.920490 GAGAGAGAAACAGCGTCATGAC 59.080 50.000 16.21 16.21 0.00 3.06
7440 14576 2.560542 AGAGAGAAACAGCGTCATGACT 59.439 45.455 22.95 3.40 0.00 3.41
7441 14577 2.920490 GAGAGAAACAGCGTCATGACTC 59.080 50.000 22.95 15.86 0.00 3.36
7442 14578 2.297315 AGAGAAACAGCGTCATGACTCA 59.703 45.455 22.95 0.00 0.00 3.41
7443 14579 3.056250 AGAGAAACAGCGTCATGACTCAT 60.056 43.478 22.95 5.60 0.00 2.90
7444 14580 2.998670 AGAAACAGCGTCATGACTCATG 59.001 45.455 22.95 18.94 42.60 3.07
7445 14581 2.749280 AACAGCGTCATGACTCATGA 57.251 45.000 22.95 16.44 46.84 3.07
7452 14588 1.963172 TCATGACTCATGATGCAGGC 58.037 50.000 16.44 0.00 44.60 4.85
7493 14654 1.153147 GAAGGCGGATGGAGGGAAC 60.153 63.158 0.00 0.00 0.00 3.62
7609 14776 3.522808 GGGACGCTGGTCTCGTAT 58.477 61.111 0.00 0.00 42.97 3.06
7630 14797 1.946283 GCTCCTAAACTGGTGGCTGAC 60.946 57.143 0.00 0.00 0.00 3.51
7637 14804 3.290948 AACTGGTGGCTGACTTGTTTA 57.709 42.857 0.00 0.00 0.00 2.01
7676 14847 2.407521 TGAGATCGATTAGTCTGCGC 57.592 50.000 0.00 0.00 0.00 6.09
7688 14859 2.270205 CTGCGCCCAGACCAATCT 59.730 61.111 4.18 0.00 41.77 2.40
7707 14878 8.061304 ACCAATCTAATCCAGTCCAATAAATGT 58.939 33.333 0.00 0.00 0.00 2.71
7722 14893 8.440771 TCCAATAAATGTTAAAACCCAAACCAT 58.559 29.630 0.00 0.00 0.00 3.55
7735 14906 8.706322 AAACCCAAACCATACCAGATTATATC 57.294 34.615 0.00 0.00 0.00 1.63
7742 14913 4.474651 CCATACCAGATTATATCAGGGCCA 59.525 45.833 6.18 0.00 40.00 5.36
7764 14935 3.639561 ACAGACCATTTAAACCAACCCAC 59.360 43.478 0.00 0.00 0.00 4.61
7775 14956 0.397816 CCAACCCACCAGGAAAACCA 60.398 55.000 0.00 0.00 39.89 3.67
7780 14961 1.686587 CCCACCAGGAAAACCAAACTC 59.313 52.381 0.00 0.00 38.24 3.01
7792 14973 6.755141 GGAAAACCAAACTCAAACTTAGGTTC 59.245 38.462 0.00 0.00 36.92 3.62
7793 14974 6.844097 AAACCAAACTCAAACTTAGGTTCA 57.156 33.333 0.00 0.00 36.92 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.231958 TAAACCAGTGCCTTTCGCGG 61.232 55.000 6.13 0.00 42.08 6.46
1 2 0.110373 GTAAACCAGTGCCTTTCGCG 60.110 55.000 0.00 0.00 42.08 5.87
2 3 1.235724 AGTAAACCAGTGCCTTTCGC 58.764 50.000 0.00 0.00 38.31 4.70
3 4 3.139077 AGAAGTAAACCAGTGCCTTTCG 58.861 45.455 0.00 0.00 0.00 3.46
4 5 3.186613 CGAGAAGTAAACCAGTGCCTTTC 59.813 47.826 0.00 0.00 0.00 2.62
5 6 3.139077 CGAGAAGTAAACCAGTGCCTTT 58.861 45.455 0.00 0.00 0.00 3.11
6 7 2.104281 ACGAGAAGTAAACCAGTGCCTT 59.896 45.455 0.00 0.00 0.00 4.35
7 8 1.692519 ACGAGAAGTAAACCAGTGCCT 59.307 47.619 0.00 0.00 0.00 4.75
8 9 1.798813 CACGAGAAGTAAACCAGTGCC 59.201 52.381 0.00 0.00 0.00 5.01
9 10 1.798813 CCACGAGAAGTAAACCAGTGC 59.201 52.381 0.00 0.00 0.00 4.40
10 11 3.318017 CTCCACGAGAAGTAAACCAGTG 58.682 50.000 0.00 0.00 0.00 3.66
11 12 2.299297 CCTCCACGAGAAGTAAACCAGT 59.701 50.000 0.00 0.00 0.00 4.00
12 13 2.299297 ACCTCCACGAGAAGTAAACCAG 59.701 50.000 0.00 0.00 0.00 4.00
13 14 2.322658 ACCTCCACGAGAAGTAAACCA 58.677 47.619 0.00 0.00 0.00 3.67
45 46 1.407618 AGCCACGTGTTTTTCCCTTTC 59.592 47.619 15.65 0.00 0.00 2.62
54 55 1.096416 TTCCGAAAAGCCACGTGTTT 58.904 45.000 15.65 8.60 0.00 2.83
57 58 2.196295 TTTTTCCGAAAAGCCACGTG 57.804 45.000 9.08 9.08 31.41 4.49
100 108 4.783242 AGGTTTCGATGAACATTTTCACG 58.217 39.130 0.00 3.78 44.66 4.35
101 109 7.526608 TGATAGGTTTCGATGAACATTTTCAC 58.473 34.615 0.00 0.00 44.66 3.18
102 110 7.680442 TGATAGGTTTCGATGAACATTTTCA 57.320 32.000 0.00 0.00 45.93 2.69
108 119 6.710295 CCCATATTGATAGGTTTCGATGAACA 59.290 38.462 2.63 0.00 0.00 3.18
113 124 7.502060 AGATCCCATATTGATAGGTTTCGAT 57.498 36.000 0.00 0.00 0.00 3.59
143 154 2.640316 TCCCTCGATCGAGATCTTCA 57.360 50.000 39.64 17.30 44.53 3.02
144 155 2.422127 GGATCCCTCGATCGAGATCTTC 59.578 54.545 39.64 28.19 45.16 2.87
146 157 1.352687 TGGATCCCTCGATCGAGATCT 59.647 52.381 39.64 24.92 45.16 2.75
147 158 1.827681 TGGATCCCTCGATCGAGATC 58.172 55.000 39.64 32.53 45.16 2.75
148 159 1.889829 GTTGGATCCCTCGATCGAGAT 59.110 52.381 39.64 28.19 45.16 2.75
149 160 1.319541 GTTGGATCCCTCGATCGAGA 58.680 55.000 39.64 25.07 45.16 4.04
150 161 0.039978 CGTTGGATCCCTCGATCGAG 60.040 60.000 33.32 33.32 45.16 4.04
152 163 1.007271 CCGTTGGATCCCTCGATCG 60.007 63.158 21.76 9.36 45.16 3.69
153 164 0.249489 CACCGTTGGATCCCTCGATC 60.249 60.000 21.76 0.00 43.73 3.69
154 165 0.686441 TCACCGTTGGATCCCTCGAT 60.686 55.000 21.76 6.93 0.00 3.59
155 166 0.901114 TTCACCGTTGGATCCCTCGA 60.901 55.000 21.76 3.84 0.00 4.04
177 188 0.173935 CTTATACCGTGCGTCCACCA 59.826 55.000 0.00 0.00 38.79 4.17
181 192 3.366440 AATCTCTTATACCGTGCGTCC 57.634 47.619 0.00 0.00 0.00 4.79
185 196 9.221775 CAAAATGTTTAATCTCTTATACCGTGC 57.778 33.333 0.00 0.00 0.00 5.34
234 245 1.818131 GCAACCTCGAAGTTTTCCCCT 60.818 52.381 0.00 0.00 0.00 4.79
235 246 0.596577 GCAACCTCGAAGTTTTCCCC 59.403 55.000 0.00 0.00 0.00 4.81
237 248 2.098443 TGTTGCAACCTCGAAGTTTTCC 59.902 45.455 26.14 0.00 0.00 3.13
238 249 3.414549 TGTTGCAACCTCGAAGTTTTC 57.585 42.857 26.14 0.00 0.00 2.29
239 250 3.192633 ACTTGTTGCAACCTCGAAGTTTT 59.807 39.130 26.14 5.34 0.00 2.43
245 256 1.444119 GCCACTTGTTGCAACCTCGA 61.444 55.000 26.14 5.10 0.00 4.04
246 257 1.008538 GCCACTTGTTGCAACCTCG 60.009 57.895 26.14 16.08 0.00 4.63
249 260 2.421314 GGGCCACTTGTTGCAACC 59.579 61.111 26.14 9.23 0.00 3.77
257 268 1.005867 GTTGCATGTGGGCCACTTG 60.006 57.895 35.70 35.70 40.80 3.16
274 285 1.654220 GTTGCGACAAGTGGCATGT 59.346 52.632 10.62 0.00 43.56 3.21
276 287 0.823356 AAGGTTGCGACAAGTGGCAT 60.823 50.000 10.62 0.00 43.56 4.40
277 288 1.034838 AAAGGTTGCGACAAGTGGCA 61.035 50.000 6.39 5.77 42.47 4.92
278 289 0.102300 AAAAGGTTGCGACAAGTGGC 59.898 50.000 6.39 0.00 34.76 5.01
279 290 3.550030 CCTTAAAAGGTTGCGACAAGTGG 60.550 47.826 6.39 0.00 41.41 4.00
281 292 3.982576 CCTTAAAAGGTTGCGACAAGT 57.017 42.857 6.39 0.00 41.41 3.16
290 301 6.839134 AAAGATCACTTCCACCTTAAAAGGTT 59.161 34.615 11.76 0.00 45.33 3.50
292 303 6.294731 CCAAAGATCACTTCCACCTTAAAAGG 60.295 42.308 7.22 7.22 42.73 3.11
293 304 6.490040 TCCAAAGATCACTTCCACCTTAAAAG 59.510 38.462 0.00 0.00 35.05 2.27
294 305 6.369629 TCCAAAGATCACTTCCACCTTAAAA 58.630 36.000 0.00 0.00 35.05 1.52
295 306 5.947663 TCCAAAGATCACTTCCACCTTAAA 58.052 37.500 0.00 0.00 35.05 1.52
296 307 5.576563 TCCAAAGATCACTTCCACCTTAA 57.423 39.130 0.00 0.00 35.05 1.85
317 328 3.128242 TCCGAAATCACGAGTACTCCTTC 59.872 47.826 17.23 10.62 35.09 3.46
321 332 4.091075 GGTTTTCCGAAATCACGAGTACTC 59.909 45.833 13.18 13.18 35.09 2.59
329 340 1.533731 TGCGAGGTTTTCCGAAATCAC 59.466 47.619 0.00 0.00 46.35 3.06
331 342 2.418628 TCATGCGAGGTTTTCCGAAATC 59.581 45.455 0.00 0.00 46.35 2.17
335 346 1.737236 CAATCATGCGAGGTTTTCCGA 59.263 47.619 0.00 0.00 46.35 4.55
336 347 1.737236 TCAATCATGCGAGGTTTTCCG 59.263 47.619 0.00 0.00 46.35 4.30
337 348 3.009723 TCTCAATCATGCGAGGTTTTCC 58.990 45.455 6.74 0.00 41.05 3.13
340 351 2.002586 CGTCTCAATCATGCGAGGTTT 58.997 47.619 6.74 0.00 0.00 3.27
341 352 1.204704 TCGTCTCAATCATGCGAGGTT 59.795 47.619 6.74 0.00 30.35 3.50
342 353 0.817654 TCGTCTCAATCATGCGAGGT 59.182 50.000 6.74 0.00 30.35 3.85
344 355 1.913317 TGTCGTCTCAATCATGCGAG 58.087 50.000 0.00 0.00 32.07 5.03
345 356 2.195922 CATGTCGTCTCAATCATGCGA 58.804 47.619 0.00 0.00 32.83 5.10
346 357 1.929169 ACATGTCGTCTCAATCATGCG 59.071 47.619 0.00 0.00 40.57 4.73
347 358 3.582444 GACATGTCGTCTCAATCATGC 57.418 47.619 10.69 0.00 41.81 4.06
357 375 7.675962 ATAGGATCTAAGTAGACATGTCGTC 57.324 40.000 19.85 15.93 45.77 4.20
390 408 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
391 409 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
392 410 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
393 411 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
394 412 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
395 413 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
396 414 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
397 415 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
398 416 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
415 433 8.612619 GTCACTTGTTGAAAATGTCTAGAAAGA 58.387 33.333 0.00 0.00 35.39 2.52
416 434 8.616076 AGTCACTTGTTGAAAATGTCTAGAAAG 58.384 33.333 0.00 0.00 35.39 2.62
417 435 8.506168 AGTCACTTGTTGAAAATGTCTAGAAA 57.494 30.769 0.00 0.00 35.39 2.52
418 436 9.042008 GTAGTCACTTGTTGAAAATGTCTAGAA 57.958 33.333 0.00 0.00 35.39 2.10
419 437 8.201464 TGTAGTCACTTGTTGAAAATGTCTAGA 58.799 33.333 0.00 0.00 35.39 2.43
420 438 8.365399 TGTAGTCACTTGTTGAAAATGTCTAG 57.635 34.615 0.00 0.00 35.39 2.43
421 439 8.902540 ATGTAGTCACTTGTTGAAAATGTCTA 57.097 30.769 0.00 0.00 35.39 2.59
422 440 7.807977 ATGTAGTCACTTGTTGAAAATGTCT 57.192 32.000 0.00 0.00 35.39 3.41
423 441 7.740346 CGTATGTAGTCACTTGTTGAAAATGTC 59.260 37.037 0.00 0.00 35.39 3.06
424 442 7.439955 TCGTATGTAGTCACTTGTTGAAAATGT 59.560 33.333 0.00 0.00 35.39 2.71
425 443 7.792925 TCGTATGTAGTCACTTGTTGAAAATG 58.207 34.615 0.00 0.00 35.39 2.32
426 444 7.956420 TCGTATGTAGTCACTTGTTGAAAAT 57.044 32.000 0.00 0.00 35.39 1.82
427 445 7.517734 GCTTCGTATGTAGTCACTTGTTGAAAA 60.518 37.037 0.00 0.00 35.39 2.29
428 446 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
429 447 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
430 448 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
431 449 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
432 450 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
433 451 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
434 452 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
435 453 8.542497 TTATTTTGCTTCGTATGTAGTCACTT 57.458 30.769 0.00 0.00 0.00 3.16
436 454 7.817962 ACTTATTTTGCTTCGTATGTAGTCACT 59.182 33.333 0.00 0.00 0.00 3.41
437 455 7.898309 CACTTATTTTGCTTCGTATGTAGTCAC 59.102 37.037 0.00 0.00 0.00 3.67
438 456 7.815549 TCACTTATTTTGCTTCGTATGTAGTCA 59.184 33.333 0.00 0.00 0.00 3.41
439 457 8.181487 TCACTTATTTTGCTTCGTATGTAGTC 57.819 34.615 0.00 0.00 0.00 2.59
440 458 8.542497 TTCACTTATTTTGCTTCGTATGTAGT 57.458 30.769 0.00 0.00 0.00 2.73
441 459 9.638300 GATTCACTTATTTTGCTTCGTATGTAG 57.362 33.333 0.00 0.00 0.00 2.74
442 460 9.378551 AGATTCACTTATTTTGCTTCGTATGTA 57.621 29.630 0.00 0.00 0.00 2.29
443 461 8.268850 AGATTCACTTATTTTGCTTCGTATGT 57.731 30.769 0.00 0.00 0.00 2.29
444 462 9.638300 GTAGATTCACTTATTTTGCTTCGTATG 57.362 33.333 0.00 0.00 0.00 2.39
445 463 9.378551 TGTAGATTCACTTATTTTGCTTCGTAT 57.621 29.630 0.00 0.00 0.00 3.06
446 464 8.766000 TGTAGATTCACTTATTTTGCTTCGTA 57.234 30.769 0.00 0.00 0.00 3.43
447 465 7.667043 TGTAGATTCACTTATTTTGCTTCGT 57.333 32.000 0.00 0.00 0.00 3.85
448 466 9.214953 GAATGTAGATTCACTTATTTTGCTTCG 57.785 33.333 7.69 0.00 38.33 3.79
479 497 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
481 499 7.956328 ACCACATACGGATGTATATAGACAT 57.044 36.000 14.23 12.70 44.82 3.06
482 500 8.105197 ACTACCACATACGGATGTATATAGACA 58.895 37.037 22.62 2.07 44.82 3.41
483 501 8.503458 ACTACCACATACGGATGTATATAGAC 57.497 38.462 22.62 0.00 44.82 2.59
484 502 7.772292 GGACTACCACATACGGATGTATATAGA 59.228 40.741 22.62 5.04 44.82 1.98
485 503 7.555195 TGGACTACCACATACGGATGTATATAG 59.445 40.741 14.23 16.35 44.82 1.31
486 504 7.404481 TGGACTACCACATACGGATGTATATA 58.596 38.462 14.23 5.36 44.82 0.86
487 505 6.250711 TGGACTACCACATACGGATGTATAT 58.749 40.000 14.23 4.37 44.82 0.86
488 506 5.633117 TGGACTACCACATACGGATGTATA 58.367 41.667 14.23 8.27 44.82 1.47
489 507 4.476297 TGGACTACCACATACGGATGTAT 58.524 43.478 14.23 7.46 44.82 2.29
490 508 3.900971 TGGACTACCACATACGGATGTA 58.099 45.455 14.23 0.00 44.82 2.29
506 524 9.354673 TGTCTTTTTAGAGATTTCAAATGGACT 57.645 29.630 0.00 0.00 0.00 3.85
507 525 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
524 542 9.908152 CCTCCGTTTCTAAATATTTGTCTTTTT 57.092 29.630 11.05 0.00 0.00 1.94
525 543 8.520351 CCCTCCGTTTCTAAATATTTGTCTTTT 58.480 33.333 11.05 0.00 0.00 2.27
526 544 7.886446 TCCCTCCGTTTCTAAATATTTGTCTTT 59.114 33.333 11.05 0.00 0.00 2.52
527 545 7.399634 TCCCTCCGTTTCTAAATATTTGTCTT 58.600 34.615 11.05 0.00 0.00 3.01
528 546 6.954232 TCCCTCCGTTTCTAAATATTTGTCT 58.046 36.000 11.05 0.00 0.00 3.41
529 547 6.822170 ACTCCCTCCGTTTCTAAATATTTGTC 59.178 38.462 11.05 0.00 0.00 3.18
530 548 6.718294 ACTCCCTCCGTTTCTAAATATTTGT 58.282 36.000 11.05 0.00 0.00 2.83
531 549 8.904099 ATACTCCCTCCGTTTCTAAATATTTG 57.096 34.615 11.05 1.65 0.00 2.32
532 550 9.916360 AAATACTCCCTCCGTTTCTAAATATTT 57.084 29.630 5.89 5.89 0.00 1.40
536 554 8.711170 TGATAAATACTCCCTCCGTTTCTAAAT 58.289 33.333 0.00 0.00 0.00 1.40
537 555 8.081517 TGATAAATACTCCCTCCGTTTCTAAA 57.918 34.615 0.00 0.00 0.00 1.85
538 556 7.664552 TGATAAATACTCCCTCCGTTTCTAA 57.335 36.000 0.00 0.00 0.00 2.10
539 557 7.664552 TTGATAAATACTCCCTCCGTTTCTA 57.335 36.000 0.00 0.00 0.00 2.10
540 558 6.555463 TTGATAAATACTCCCTCCGTTTCT 57.445 37.500 0.00 0.00 0.00 2.52
541 559 7.619964 TTTTGATAAATACTCCCTCCGTTTC 57.380 36.000 0.00 0.00 0.00 2.78
542 560 8.589701 AATTTTGATAAATACTCCCTCCGTTT 57.410 30.769 0.00 0.00 32.85 3.60
543 561 8.466798 CAAATTTTGATAAATACTCCCTCCGTT 58.533 33.333 2.88 0.00 32.85 4.44
544 562 7.614192 ACAAATTTTGATAAATACTCCCTCCGT 59.386 33.333 15.81 0.00 32.85 4.69
545 563 7.996385 ACAAATTTTGATAAATACTCCCTCCG 58.004 34.615 15.81 0.00 32.85 4.63
691 724 9.218525 GGATTCTGGAGGATTATATTCCTATGA 57.781 37.037 14.75 10.73 46.35 2.15
747 780 3.683365 ATGTTGAACTGGCCATTTTCC 57.317 42.857 19.66 6.26 0.00 3.13
748 781 7.671495 ATAAAATGTTGAACTGGCCATTTTC 57.329 32.000 5.51 13.16 43.01 2.29
755 960 7.319646 TCATGGTTATAAAATGTTGAACTGGC 58.680 34.615 0.00 0.00 0.00 4.85
894 1134 4.936685 AAACTATCTTTCCCTCTGGCTT 57.063 40.909 0.00 0.00 0.00 4.35
955 2718 5.618236 GCCGTTTAGGGTTAGGAGAATTAT 58.382 41.667 0.00 0.00 41.48 1.28
1023 2786 2.589159 GGGATCGGAAGCTTCGGC 60.589 66.667 24.87 14.12 42.17 5.54
1024 2787 2.109181 GGGGATCGGAAGCTTCGG 59.891 66.667 24.00 24.00 0.00 4.30
1133 2897 1.898863 ATTGGGGGAGATAGCACAGT 58.101 50.000 0.00 0.00 0.00 3.55
1354 3517 0.904865 TGTCGCAGATCTCCTTGGGT 60.905 55.000 0.00 0.00 40.67 4.51
1427 3590 9.832445 GTTGGATAGATTTCATAACTCCTGTAA 57.168 33.333 0.00 0.00 0.00 2.41
1481 3659 4.271533 TGATAACTGAAACTTTCGTGCGTT 59.728 37.500 0.00 1.76 0.00 4.84
1727 3906 1.881973 TGTTCTCTGTGAGCCATTTGC 59.118 47.619 0.00 0.00 41.71 3.68
1779 3958 4.697352 GCGGAGATGAATATATGCAAGGTT 59.303 41.667 0.00 0.00 0.00 3.50
2032 4211 7.482654 AATCATAATGATACACCGAACACAG 57.517 36.000 0.00 0.00 35.76 3.66
2721 4987 2.629617 CAACTCATGGGCAAGGAAAAGT 59.370 45.455 0.00 0.00 0.00 2.66
2796 5062 3.342377 TGGATGGCTGACGACATTTTA 57.658 42.857 0.00 0.00 39.58 1.52
2957 5235 3.314080 GGTGAAAACAAATCCACTCGTGA 59.686 43.478 0.00 0.00 0.00 4.35
3119 5413 1.229428 GTGTGCTTGTAGCTCTTGCA 58.771 50.000 0.00 0.00 42.97 4.08
3374 5672 8.166422 ACATGACCTGAAAGTTACCTTTAAAG 57.834 34.615 8.32 8.32 40.98 1.85
3431 5730 6.375174 CACTTATGGTCTTCATCATTGTCCAA 59.625 38.462 0.00 0.00 37.30 3.53
3944 8476 6.798315 TTGCTCCGTATGTAGTCTATAGTC 57.202 41.667 0.00 0.00 0.00 2.59
4207 8751 7.614494 AGACATATGTTTAGCCAAGCAAAAAT 58.386 30.769 10.30 0.00 0.00 1.82
5229 9807 3.869912 GCTCTCCTGTATTCAGCAAACCA 60.870 47.826 0.00 0.00 40.09 3.67
5230 9808 2.680339 GCTCTCCTGTATTCAGCAAACC 59.320 50.000 0.00 0.00 40.09 3.27
5231 9809 2.680339 GGCTCTCCTGTATTCAGCAAAC 59.320 50.000 0.00 0.00 40.09 2.93
5405 9987 6.104094 TCAGGCAAAGGGGGTCTATTAATATT 59.896 38.462 0.00 0.00 0.00 1.28
5406 9988 5.615261 TCAGGCAAAGGGGGTCTATTAATAT 59.385 40.000 0.00 0.00 0.00 1.28
5628 10213 4.414337 AAAGCATGGCCAACTAACAAAA 57.586 36.364 10.96 0.00 0.00 2.44
5707 10292 0.037975 CTTGGCTGCCAGCGAATTTT 60.038 50.000 22.17 0.00 43.62 1.82
5883 10473 0.595095 GCCACAAAGAGAAGCCTGTG 59.405 55.000 0.00 0.00 39.10 3.66
6091 10718 4.356405 TCCTCTGCTGTCTTTGATTTCA 57.644 40.909 0.00 0.00 0.00 2.69
6152 10779 3.757493 CTGGATGCTTCTCTGCTTTTCTT 59.243 43.478 0.00 0.00 0.00 2.52
6248 10875 7.396907 TGCATTTCTTCAAGAGGGATGAATTTA 59.603 33.333 10.19 0.00 36.30 1.40
6329 10959 7.069455 ACCATAAATTGCAAATTAGGGAGGTAC 59.931 37.037 33.45 0.00 36.66 3.34
6528 11159 0.815734 GACCGAAGTGGCTGCTACTA 59.184 55.000 19.24 0.00 43.94 1.82
6547 11182 7.775397 AAATTTCAAATGTCAGTTTCCACAG 57.225 32.000 0.00 0.00 0.00 3.66
6928 11869 3.390135 TGAGCCGAAAGTACACTCAAAG 58.610 45.455 0.00 0.00 34.59 2.77
6966 11908 1.363744 CTGAAAACAGGCCGAGCTAG 58.636 55.000 0.00 0.00 0.00 3.42
7025 14114 1.975407 CAGGCCCCAAGTTCAGCTG 60.975 63.158 7.63 7.63 0.00 4.24
7078 14167 4.020617 CGAGAAGCTGGCCACCCA 62.021 66.667 0.00 0.00 39.32 4.51
7079 14168 4.785453 CCGAGAAGCTGGCCACCC 62.785 72.222 0.00 0.00 0.00 4.61
7080 14169 4.785453 CCCGAGAAGCTGGCCACC 62.785 72.222 0.00 0.00 0.00 4.61
7081 14170 4.785453 CCCCGAGAAGCTGGCCAC 62.785 72.222 0.00 0.00 0.00 5.01
7083 14172 4.168291 CTCCCCGAGAAGCTGGCC 62.168 72.222 0.00 0.00 0.00 5.36
7124 14213 3.851403 CGGTATTTGAAATTGCTCCGTTG 59.149 43.478 0.00 0.00 33.39 4.10
7128 14217 3.128589 TGAGCGGTATTTGAAATTGCTCC 59.871 43.478 23.92 13.85 45.00 4.70
7129 14218 4.355543 TGAGCGGTATTTGAAATTGCTC 57.644 40.909 21.91 21.91 45.61 4.26
7130 14219 4.782019 TTGAGCGGTATTTGAAATTGCT 57.218 36.364 10.41 10.41 0.00 3.91
7131 14220 5.837586 TTTTGAGCGGTATTTGAAATTGC 57.162 34.783 0.00 0.00 0.00 3.56
7167 14256 3.368739 GCCTGGTTTCAATCTGGATTTGG 60.369 47.826 0.05 0.00 30.31 3.28
7252 14353 2.678336 GGATGGAAACTAGCTTGGTTCG 59.322 50.000 17.79 0.00 0.00 3.95
7336 14443 1.269726 CCACGTTACGTACCAACACCT 60.270 52.381 10.89 0.00 38.32 4.00
7356 14463 2.263077 CACGCAGATGACCAGTAACTC 58.737 52.381 0.00 0.00 0.00 3.01
7359 14466 0.391130 GCCACGCAGATGACCAGTAA 60.391 55.000 0.00 0.00 0.00 2.24
7383 14490 1.405526 GGTCTCTCCATTAAGCGCACA 60.406 52.381 11.47 0.00 35.97 4.57
7402 14509 3.295093 TCTCTCTCCATGAAGCTACTGG 58.705 50.000 0.00 3.32 0.00 4.00
7403 14510 4.206375 TCTCTCTCTCCATGAAGCTACTG 58.794 47.826 0.00 0.00 0.00 2.74
7404 14511 4.518278 TCTCTCTCTCCATGAAGCTACT 57.482 45.455 0.00 0.00 0.00 2.57
7405 14512 5.105554 TGTTTCTCTCTCTCCATGAAGCTAC 60.106 44.000 0.00 0.00 0.00 3.58
7406 14513 5.019470 TGTTTCTCTCTCTCCATGAAGCTA 58.981 41.667 0.00 0.00 0.00 3.32
7407 14514 3.837146 TGTTTCTCTCTCTCCATGAAGCT 59.163 43.478 0.00 0.00 0.00 3.74
7439 14575 3.002277 ATGACGCCTGCATCATGAG 57.998 52.632 0.09 0.00 34.23 2.90
7442 14578 1.520494 GATCATGACGCCTGCATCAT 58.480 50.000 0.00 0.00 35.93 2.45
7443 14579 0.877213 CGATCATGACGCCTGCATCA 60.877 55.000 0.00 0.00 0.00 3.07
7444 14580 0.598419 TCGATCATGACGCCTGCATC 60.598 55.000 0.00 0.00 0.00 3.91
7445 14581 0.877649 GTCGATCATGACGCCTGCAT 60.878 55.000 0.00 0.00 0.00 3.96
7446 14582 1.519234 GTCGATCATGACGCCTGCA 60.519 57.895 0.00 0.00 0.00 4.41
7447 14583 1.519234 TGTCGATCATGACGCCTGC 60.519 57.895 0.00 0.00 41.87 4.85
7448 14584 1.474648 CGTGTCGATCATGACGCCTG 61.475 60.000 0.00 0.00 44.52 4.85
7449 14585 1.226688 CGTGTCGATCATGACGCCT 60.227 57.895 0.00 0.00 44.52 5.52
7493 14654 4.570663 GAGATCCGACGGCCGTGG 62.571 72.222 39.65 34.76 36.31 4.94
7563 14724 4.498520 ACGAGACCAGCGCATCGG 62.499 66.667 11.47 9.87 39.42 4.18
7609 14776 0.036732 CAGCCACCAGTTTAGGAGCA 59.963 55.000 0.00 0.00 35.08 4.26
7637 14804 9.994432 GATCTCAAATCGTTTTTGTAATCTCAT 57.006 29.630 11.45 0.00 0.00 2.90
7676 14847 3.181450 GGACTGGATTAGATTGGTCTGGG 60.181 52.174 0.00 0.00 35.87 4.45
7707 14878 8.903059 ATAATCTGGTATGGTTTGGGTTTTAA 57.097 30.769 0.00 0.00 0.00 1.52
7712 14883 7.401060 TGATATAATCTGGTATGGTTTGGGT 57.599 36.000 0.00 0.00 0.00 4.51
7722 14893 4.498493 TGTGGCCCTGATATAATCTGGTA 58.502 43.478 0.00 0.00 44.29 3.25
7735 14906 2.214376 TTAAATGGTCTGTGGCCCTG 57.786 50.000 0.00 0.00 0.00 4.45
7742 14913 3.639561 GTGGGTTGGTTTAAATGGTCTGT 59.360 43.478 0.00 0.00 0.00 3.41
7764 14935 4.736126 AGTTTGAGTTTGGTTTTCCTGG 57.264 40.909 0.00 0.00 41.38 4.45
7775 14956 6.184789 TGGACTTGAACCTAAGTTTGAGTTT 58.815 36.000 0.00 0.00 40.78 2.66
7780 14961 6.451064 AGTTTGGACTTGAACCTAAGTTTG 57.549 37.500 0.00 0.00 40.78 2.93


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.