Multiple sequence alignment - TraesCS4B01G245400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G245400 chr4B 100.000 5514 0 0 582 6095 507250908 507245395 0.000000e+00 10183.0
1 TraesCS4B01G245400 chr4B 100.000 41 0 0 1 41 507251489 507251449 6.550000e-10 76.8
2 TraesCS4B01G245400 chr4D 95.274 4190 157 24 1937 6095 408791165 408795344 0.000000e+00 6602.0
3 TraesCS4B01G245400 chr4D 91.970 1208 36 20 582 1757 408789909 408791087 0.000000e+00 1637.0
4 TraesCS4B01G245400 chr4D 98.485 66 1 0 1808 1873 408791099 408791164 3.860000e-22 117.0
5 TraesCS4B01G245400 chr4A 96.093 2073 79 2 3206 5277 80167104 80169175 0.000000e+00 3378.0
6 TraesCS4B01G245400 chr4A 92.741 1295 59 15 1937 3209 80165663 80166944 0.000000e+00 1838.0
7 TraesCS4B01G245400 chr4A 91.537 1028 37 16 582 1594 80164084 80165076 0.000000e+00 1371.0
8 TraesCS4B01G245400 chr4A 88.261 920 71 16 5207 6095 80169167 80170080 0.000000e+00 1066.0
9 TraesCS4B01G245400 chr4A 82.927 287 12 5 1595 1873 80165405 80165662 2.210000e-54 224.0
10 TraesCS4B01G245400 chr4A 90.141 71 7 0 5207 5277 80169136 80169206 6.500000e-15 93.5
11 TraesCS4B01G245400 chr2A 95.000 80 3 1 1870 1948 622584500 622584579 2.310000e-24 124.0
12 TraesCS4B01G245400 chrUn 93.750 80 4 1 1867 1945 34537825 34537904 1.070000e-22 119.0
13 TraesCS4B01G245400 chr1D 94.805 77 3 1 1870 1945 60650752 60650828 1.070000e-22 119.0
14 TraesCS4B01G245400 chr1D 94.805 77 3 1 1870 1945 124121367 124121443 1.070000e-22 119.0
15 TraesCS4B01G245400 chr1A 92.771 83 5 1 1871 1952 530167078 530166996 1.070000e-22 119.0
16 TraesCS4B01G245400 chr5B 91.765 85 5 2 1866 1948 440022394 440022310 3.860000e-22 117.0
17 TraesCS4B01G245400 chr1B 90.909 88 7 1 1862 1948 567855436 567855523 3.860000e-22 117.0
18 TraesCS4B01G245400 chr7D 91.667 84 6 1 1867 1949 613708056 613708139 1.390000e-21 115.0
19 TraesCS4B01G245400 chr2B 90.909 88 5 3 1863 1948 475277764 475277678 1.390000e-21 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G245400 chr4B 507245395 507251489 6094 True 5129.900000 10183 100.000000 1 6095 2 chr4B.!!$R1 6094
1 TraesCS4B01G245400 chr4D 408789909 408795344 5435 False 2785.333333 6602 95.243000 582 6095 3 chr4D.!!$F1 5513
2 TraesCS4B01G245400 chr4A 80164084 80170080 5996 False 1328.416667 3378 90.283333 582 6095 6 chr4A.!!$F1 5513

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
923 928 1.066573 AGCCTTGCTAGCTAGTGTGTG 60.067 52.381 21.62 9.57 39.29 3.82 F
1887 2256 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46 F
3384 3941 0.178950 AGGCATCGCTCAGGAGGATA 60.179 55.000 0.00 0.00 0.00 2.59 F
3766 4323 0.099259 CCATGTATGTGCAGCCAACG 59.901 55.000 0.00 0.00 0.00 4.10 F
4157 4714 0.682292 TCTATGTCAACCGTGTGGCA 59.318 50.000 0.00 0.00 39.70 4.92 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2221 2594 0.323725 CACCCTGCCAACTATGCCTT 60.324 55.000 0.00 0.0 0.00 4.35 R
3575 4132 0.463295 CTGGAGCACCGCAATCTGAT 60.463 55.000 0.00 0.0 39.42 2.90 R
4544 5101 0.179048 CTCACTGGCAGGTGTGTTGA 60.179 55.000 20.34 11.0 38.28 3.18 R
4976 5533 0.601311 GCGCTGAACTCCACAGTCTT 60.601 55.000 0.00 0.0 37.64 3.01 R
5468 6088 1.073763 ACAGAACAACATGGCCTGCTA 59.926 47.619 3.32 0.0 0.00 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 8.942338 AAAGTCCTTTAAAGTTTGATGGAAAC 57.058 30.769 14.33 6.39 43.89 2.78
30 31 7.654022 AGTCCTTTAAAGTTTGATGGAAACA 57.346 32.000 14.33 0.00 45.69 2.83
686 687 4.410400 CCCAGTCAACCTCGCCCC 62.410 72.222 0.00 0.00 0.00 5.80
687 688 4.410400 CCAGTCAACCTCGCCCCC 62.410 72.222 0.00 0.00 0.00 5.40
730 731 3.140141 CGGGGCGACAATGGCAAT 61.140 61.111 0.00 0.00 35.84 3.56
731 732 2.495866 GGGGCGACAATGGCAATG 59.504 61.111 0.00 0.00 35.84 2.82
732 733 2.495866 GGGCGACAATGGCAATGG 59.504 61.111 7.57 0.00 35.84 3.16
888 893 1.337260 ACGTAGGCTGAGAAACTGCTG 60.337 52.381 0.00 0.00 41.95 4.41
922 927 1.270907 AGCCTTGCTAGCTAGTGTGT 58.729 50.000 21.62 3.77 39.29 3.72
923 928 1.066573 AGCCTTGCTAGCTAGTGTGTG 60.067 52.381 21.62 9.57 39.29 3.82
924 929 1.338200 GCCTTGCTAGCTAGTGTGTGT 60.338 52.381 21.62 0.00 0.00 3.72
925 930 2.341257 CCTTGCTAGCTAGTGTGTGTG 58.659 52.381 21.62 4.10 0.00 3.82
926 931 2.289072 CCTTGCTAGCTAGTGTGTGTGT 60.289 50.000 21.62 0.00 0.00 3.72
927 932 2.438868 TGCTAGCTAGTGTGTGTGTG 57.561 50.000 21.62 0.00 0.00 3.82
928 933 1.686587 TGCTAGCTAGTGTGTGTGTGT 59.313 47.619 21.62 0.00 0.00 3.72
947 952 2.070028 GTGTGTGTGTGTGTGTGTACA 58.930 47.619 0.00 0.00 0.00 2.90
1085 1104 1.698165 GTCGTCGATGAGCTCAACAA 58.302 50.000 22.50 0.00 0.00 2.83
1111 1130 3.772025 GGAGAATCTCCTCAGAGGTTTGA 59.228 47.826 21.48 12.98 43.75 2.69
1120 1139 4.102210 TCCTCAGAGGTTTGATCCATCATC 59.898 45.833 16.65 0.00 36.53 2.92
1121 1140 4.102838 CCTCAGAGGTTTGATCCATCATCT 59.897 45.833 8.54 0.00 36.56 2.90
1122 1141 5.306419 CCTCAGAGGTTTGATCCATCATCTA 59.694 44.000 8.54 0.00 36.56 1.98
1123 1142 6.416631 TCAGAGGTTTGATCCATCATCTAG 57.583 41.667 0.00 0.00 36.56 2.43
1133 1152 6.252233 TGATCCATCATCTAGCTAGCTACTT 58.748 40.000 20.67 8.03 31.92 2.24
1144 1163 4.195416 AGCTAGCTACTTTGGCTTTGATC 58.805 43.478 17.69 0.00 40.74 2.92
1178 1203 0.607489 GCACCACACAAGGCTGAGAT 60.607 55.000 0.00 0.00 0.00 2.75
1461 1492 2.679450 TGACGAAAACCTACGACATGG 58.321 47.619 0.00 0.00 30.94 3.66
1486 1517 8.742777 GGATGTTTGTATATTATCATGGTGCAT 58.257 33.333 0.00 0.00 0.00 3.96
1652 2011 2.473816 CACATATAGCTGTGGACGTGG 58.526 52.381 0.00 0.00 42.26 4.94
1683 2042 7.913789 TGAACTTCTTAGTAAATAGGGAGCAA 58.086 34.615 0.00 0.00 33.17 3.91
1698 2064 4.347876 AGGGAGCAAATAATATTTTGGCCC 59.652 41.667 0.00 14.09 37.13 5.80
1714 2080 2.440253 TGGCCCAAGTACCACCATATAC 59.560 50.000 0.00 0.00 0.00 1.47
1765 2134 8.617809 ACTTATGCAATACGTATTTTTGTAGGG 58.382 33.333 18.06 5.93 28.50 3.53
1766 2135 8.734218 TTATGCAATACGTATTTTTGTAGGGA 57.266 30.769 18.06 7.09 0.00 4.20
1767 2136 7.633193 ATGCAATACGTATTTTTGTAGGGAA 57.367 32.000 18.06 0.00 0.00 3.97
1768 2137 7.633193 TGCAATACGTATTTTTGTAGGGAAT 57.367 32.000 18.06 0.00 0.00 3.01
1769 2138 8.734218 TGCAATACGTATTTTTGTAGGGAATA 57.266 30.769 18.06 0.00 0.00 1.75
1770 2139 9.344772 TGCAATACGTATTTTTGTAGGGAATAT 57.655 29.630 18.06 0.00 0.00 1.28
1771 2140 9.607285 GCAATACGTATTTTTGTAGGGAATATG 57.393 33.333 18.06 3.52 0.00 1.78
1775 2144 8.974060 ACGTATTTTTGTAGGGAATATGTGAT 57.026 30.769 0.00 0.00 35.36 3.06
1849 2218 7.877003 TGGTTTTAGAGAAATCGTGCATAAAA 58.123 30.769 0.00 0.00 0.00 1.52
1873 2242 7.138054 ACCAGCTTATTAATTGGCTACTACT 57.862 36.000 12.40 0.00 33.98 2.57
1874 2243 7.217906 ACCAGCTTATTAATTGGCTACTACTC 58.782 38.462 12.40 0.00 33.98 2.59
1875 2244 6.651225 CCAGCTTATTAATTGGCTACTACTCC 59.349 42.308 12.40 0.00 33.43 3.85
1876 2245 6.651225 CAGCTTATTAATTGGCTACTACTCCC 59.349 42.308 12.40 0.00 33.43 4.30
1877 2246 6.559157 AGCTTATTAATTGGCTACTACTCCCT 59.441 38.462 11.48 0.00 32.94 4.20
1878 2247 6.874664 GCTTATTAATTGGCTACTACTCCCTC 59.125 42.308 0.00 0.00 0.00 4.30
1879 2248 5.827326 ATTAATTGGCTACTACTCCCTCC 57.173 43.478 0.00 0.00 0.00 4.30
1880 2249 1.705873 ATTGGCTACTACTCCCTCCG 58.294 55.000 0.00 0.00 0.00 4.63
1881 2250 0.333993 TTGGCTACTACTCCCTCCGT 59.666 55.000 0.00 0.00 0.00 4.69
1882 2251 0.106819 TGGCTACTACTCCCTCCGTC 60.107 60.000 0.00 0.00 0.00 4.79
1883 2252 0.822944 GGCTACTACTCCCTCCGTCC 60.823 65.000 0.00 0.00 0.00 4.79
1884 2253 1.165284 GCTACTACTCCCTCCGTCCG 61.165 65.000 0.00 0.00 0.00 4.79
1885 2254 0.467384 CTACTACTCCCTCCGTCCGA 59.533 60.000 0.00 0.00 0.00 4.55
1886 2255 0.911769 TACTACTCCCTCCGTCCGAA 59.088 55.000 0.00 0.00 0.00 4.30
1887 2256 0.038744 ACTACTCCCTCCGTCCGAAA 59.961 55.000 0.00 0.00 0.00 3.46
1888 2257 1.180029 CTACTCCCTCCGTCCGAAAA 58.820 55.000 0.00 0.00 0.00 2.29
1889 2258 1.755380 CTACTCCCTCCGTCCGAAAAT 59.245 52.381 0.00 0.00 0.00 1.82
1890 2259 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1891 2260 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1892 2261 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1893 2262 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1894 2263 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1895 2264 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1896 2265 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1897 2266 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1898 2267 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1899 2268 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1900 2269 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1901 2270 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1902 2271 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1903 2272 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1904 2273 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1905 2274 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1906 2275 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
1907 2276 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
1908 2277 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
2056 2427 2.604686 TGCTCTTGGGTCTCGGCT 60.605 61.111 0.00 0.00 0.00 5.52
2144 2515 8.593945 AAATTTGCCCAGATTCTAAGATACAA 57.406 30.769 0.00 0.00 0.00 2.41
2221 2594 8.421784 AGCATGACCGAGAATTAGTAATTTAGA 58.578 33.333 9.47 0.00 0.00 2.10
2255 2628 3.005791 GCAGGGTGCAGATTTTTGTTAGT 59.994 43.478 0.00 0.00 44.26 2.24
2394 2768 6.303259 GTGCTAAGTAATCTTGTTGCTTTTCG 59.697 38.462 0.00 0.00 35.36 3.46
2445 2819 2.128771 TTTATTCTGAGCACAGGGCC 57.871 50.000 11.42 0.00 46.50 5.80
2463 2837 1.269621 GCCGACTCGCATAACCTACAT 60.270 52.381 0.00 0.00 0.00 2.29
2493 2867 7.769272 TTTTTGACAACTGAATGGACAAATC 57.231 32.000 0.00 0.00 33.92 2.17
2517 2891 6.659242 TCAAGTCTCCTGTTTCAAACTTTTCT 59.341 34.615 1.10 0.00 0.00 2.52
2800 3179 6.702329 AGACTCTACACTCCCTAATGTTTTG 58.298 40.000 0.00 0.00 0.00 2.44
2878 3257 6.494893 AATAAGATGCTGCACTTCGTTTTA 57.505 33.333 16.77 3.90 0.00 1.52
3116 3509 5.047802 CCTGGACTTAACTTTACCTGACGTA 60.048 44.000 0.00 0.00 0.00 3.57
3252 3808 6.947733 TGACATCAAATCAACTACCTCCATTT 59.052 34.615 0.00 0.00 0.00 2.32
3271 3827 6.495526 TCCATTTTTCTTCCTTTTCCGGTTAT 59.504 34.615 0.00 0.00 0.00 1.89
3384 3941 0.178950 AGGCATCGCTCAGGAGGATA 60.179 55.000 0.00 0.00 0.00 2.59
3517 4074 1.467734 GCACCATTTGAGCAGAGTGAG 59.532 52.381 0.00 0.00 0.00 3.51
3564 4121 1.746991 GCTTACCTGTGGCTGCTCC 60.747 63.158 0.00 0.00 0.00 4.70
3572 4129 0.396974 TGTGGCTGCTCCTTTGGTTT 60.397 50.000 0.00 0.00 35.26 3.27
3575 4132 2.364002 GTGGCTGCTCCTTTGGTTTTTA 59.636 45.455 0.00 0.00 35.26 1.52
3618 4175 1.155424 ACAAAAAGGCGCTCGAACGA 61.155 50.000 13.23 0.00 34.06 3.85
3728 4285 4.815308 CCAGAACCAGAATATTGAGCTGAG 59.185 45.833 0.00 0.00 0.00 3.35
3760 4317 4.039609 TGGAGATCTACCATGTATGTGCAG 59.960 45.833 1.43 0.00 32.03 4.41
3761 4318 3.993081 GAGATCTACCATGTATGTGCAGC 59.007 47.826 0.00 0.00 0.00 5.25
3766 4323 0.099259 CCATGTATGTGCAGCCAACG 59.901 55.000 0.00 0.00 0.00 4.10
3787 4344 2.549064 TCCATTATCGACATGGCAGG 57.451 50.000 17.38 0.00 41.10 4.85
3981 4538 1.001974 AGAGATGTTGCCAACGCTGTA 59.998 47.619 7.39 0.00 35.36 2.74
4003 4560 1.625818 ACTTCTACCAGAACCAGGCTG 59.374 52.381 7.75 7.75 29.89 4.85
4088 4645 9.672086 CTGGTTTGTTTCATAACGATCTTTAAA 57.328 29.630 0.00 0.00 37.06 1.52
4142 4699 2.035321 GCTGGCTCGAGCTAAAGTCTAT 59.965 50.000 34.46 0.00 41.70 1.98
4157 4714 0.682292 TCTATGTCAACCGTGTGGCA 59.318 50.000 0.00 0.00 39.70 4.92
4184 4741 2.795329 ACAGCAAACGAATGGAAGGAT 58.205 42.857 0.00 0.00 0.00 3.24
4422 4979 4.744795 AGAAATTCTGCGTGACTATCCT 57.255 40.909 0.00 0.00 0.00 3.24
4539 5096 3.588842 TGGAAGAGGACATGAGAAATGGT 59.411 43.478 0.00 0.00 0.00 3.55
4544 5101 7.340487 GGAAGAGGACATGAGAAATGGTAAATT 59.660 37.037 0.00 0.00 0.00 1.82
4790 5347 1.220206 CTGACAGCCCAAGAGCGAT 59.780 57.895 0.00 0.00 38.01 4.58
4860 5417 4.369182 CGACAAGAAGTAAAGTGACCAGT 58.631 43.478 0.00 0.00 0.00 4.00
4911 5468 4.799564 TCCAAATTACAAGCCACATTCC 57.200 40.909 0.00 0.00 0.00 3.01
4976 5533 5.359756 AGCTGTAGTATTTGATGCGAATGA 58.640 37.500 0.00 0.00 0.00 2.57
5075 5632 2.685388 CGAATGCAGAGAGTACTCAGGA 59.315 50.000 24.44 14.81 44.79 3.86
5130 5687 4.427312 CAAGAGGATGCAAAATACAAGGC 58.573 43.478 0.00 0.00 0.00 4.35
5135 5692 4.713321 AGGATGCAAAATACAAGGCTGAAT 59.287 37.500 0.00 0.00 0.00 2.57
5181 5738 3.196469 TGATCTCCTCTAGTGTTTGCAGG 59.804 47.826 0.00 0.00 0.00 4.85
5182 5739 1.902508 TCTCCTCTAGTGTTTGCAGGG 59.097 52.381 0.00 0.00 0.00 4.45
5187 5744 2.564947 CTCTAGTGTTTGCAGGGACTCT 59.435 50.000 0.00 0.00 34.60 3.24
5195 5752 3.795688 TTGCAGGGACTCTGAGAAAAT 57.204 42.857 12.44 0.00 46.18 1.82
5206 5763 7.067981 GGGACTCTGAGAAAATTATTTGCAGAT 59.932 37.037 12.44 0.00 36.64 2.90
5322 5941 8.934023 AAGACTATGTTTCAAGGGATACAAAA 57.066 30.769 0.00 0.00 38.26 2.44
5323 5942 8.934023 AGACTATGTTTCAAGGGATACAAAAA 57.066 30.769 0.00 0.00 38.26 1.94
5324 5943 9.014297 AGACTATGTTTCAAGGGATACAAAAAG 57.986 33.333 0.00 0.00 38.26 2.27
5325 5944 8.122472 ACTATGTTTCAAGGGATACAAAAAGG 57.878 34.615 0.00 0.00 38.26 3.11
5326 5945 7.947890 ACTATGTTTCAAGGGATACAAAAAGGA 59.052 33.333 0.00 0.00 38.26 3.36
5328 5947 5.303333 TGTTTCAAGGGATACAAAAAGGACC 59.697 40.000 0.00 0.00 32.99 4.46
5329 5948 4.042271 TCAAGGGATACAAAAAGGACCC 57.958 45.455 0.00 0.00 37.79 4.46
5330 5949 2.752903 CAAGGGATACAAAAAGGACCCG 59.247 50.000 0.00 0.00 41.81 5.28
5332 5951 2.645797 AGGGATACAAAAAGGACCCGAA 59.354 45.455 0.00 0.00 41.81 4.30
5333 5952 3.074836 AGGGATACAAAAAGGACCCGAAA 59.925 43.478 0.00 0.00 41.81 3.46
5334 5953 4.021229 GGGATACAAAAAGGACCCGAAAT 58.979 43.478 0.00 0.00 39.74 2.17
5341 5961 4.376225 AAAAGGACCCGAAATACCTGAA 57.624 40.909 0.00 0.00 32.73 3.02
5342 5962 3.345508 AAGGACCCGAAATACCTGAAC 57.654 47.619 0.00 0.00 32.73 3.18
5360 5980 8.712228 ACCTGAACTTCTTTGGATCTAAAATT 57.288 30.769 5.70 0.00 0.00 1.82
5361 5981 9.147732 ACCTGAACTTCTTTGGATCTAAAATTT 57.852 29.630 5.70 0.00 0.00 1.82
5395 6015 0.749091 TCATACAGGTGCAGCATGGC 60.749 55.000 19.63 0.00 35.86 4.40
5416 6036 8.545420 CATGGCAATTTATTTCTAAGAACATGC 58.455 33.333 0.00 0.00 0.00 4.06
5432 6052 0.679002 ATGCGTGCCTCTCTGCAATT 60.679 50.000 0.00 0.00 44.11 2.32
5476 6096 2.360801 TGAACAACAAAACTAGCAGGCC 59.639 45.455 0.00 0.00 0.00 5.19
5486 6106 1.352352 ACTAGCAGGCCATGTTGTTCT 59.648 47.619 5.01 0.00 0.00 3.01
5584 6206 9.088987 TGAGGAAAGGCTGTTTAAAATAAGAAT 57.911 29.630 0.00 0.00 0.00 2.40
5594 6216 9.906660 CTGTTTAAAATAAGAATGTTGGTGCTA 57.093 29.630 0.00 0.00 0.00 3.49
5604 6226 5.951747 AGAATGTTGGTGCTAATGTAATGGT 59.048 36.000 0.00 0.00 0.00 3.55
5633 6255 5.163612 GGAACAATACAAAGAGAAGGGATGC 60.164 44.000 0.00 0.00 0.00 3.91
5707 6329 6.463995 TTCCATTTTCCATCCCTTTATTCG 57.536 37.500 0.00 0.00 0.00 3.34
5714 6336 7.948034 TTTCCATCCCTTTATTCGTGTAAAT 57.052 32.000 0.00 0.00 0.00 1.40
5719 6341 6.838198 TCCCTTTATTCGTGTAAATGATCG 57.162 37.500 0.00 0.00 0.00 3.69
5720 6342 6.575267 TCCCTTTATTCGTGTAAATGATCGA 58.425 36.000 0.00 0.00 0.00 3.59
5722 6344 7.713507 TCCCTTTATTCGTGTAAATGATCGATT 59.286 33.333 0.00 0.00 32.54 3.34
5739 6361 6.493458 TGATCGATTCATCACTGTCCCTTATA 59.507 38.462 0.00 0.00 0.00 0.98
5741 6363 7.119709 TCGATTCATCACTGTCCCTTATAAA 57.880 36.000 0.00 0.00 0.00 1.40
5742 6364 7.561251 TCGATTCATCACTGTCCCTTATAAAA 58.439 34.615 0.00 0.00 0.00 1.52
5743 6365 8.044309 TCGATTCATCACTGTCCCTTATAAAAA 58.956 33.333 0.00 0.00 0.00 1.94
5770 6400 9.559732 TGGATTTGAATGTATATTGTAGTCAGG 57.440 33.333 0.00 0.00 0.00 3.86
5871 6518 9.921637 ACTTCTTTCTTTTTGTTACAAACATCA 57.078 25.926 10.28 0.00 41.79 3.07
5936 6583 5.502544 GCGAGCATAGGAAACATGTAAACTC 60.503 44.000 0.00 0.00 0.00 3.01
5937 6584 5.580691 CGAGCATAGGAAACATGTAAACTCA 59.419 40.000 0.00 0.00 0.00 3.41
6039 6686 2.289565 GCAGAACGGGAGGGAAAATAG 58.710 52.381 0.00 0.00 0.00 1.73
6041 6688 2.504175 CAGAACGGGAGGGAAAATAGGA 59.496 50.000 0.00 0.00 0.00 2.94
6042 6689 3.054655 CAGAACGGGAGGGAAAATAGGAA 60.055 47.826 0.00 0.00 0.00 3.36
6063 6710 3.726557 ACAATGAAATGGCTCTCTGGA 57.273 42.857 0.00 0.00 0.00 3.86
6079 6726 6.030548 TCTCTGGAGACAAAATGAGTACAG 57.969 41.667 0.00 0.00 42.06 2.74
6086 6733 4.278419 AGACAAAATGAGTACAGGGCAAAC 59.722 41.667 0.00 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 9.378551 GTTTCCATCAAACTTTAAAGGACTTTT 57.621 29.630 19.14 7.77 41.25 2.27
4 5 8.536175 TGTTTCCATCAAACTTTAAAGGACTTT 58.464 29.630 19.14 8.10 44.35 2.66
5 6 7.979537 GTGTTTCCATCAAACTTTAAAGGACTT 59.020 33.333 19.14 6.86 44.35 3.01
6 7 7.123547 TGTGTTTCCATCAAACTTTAAAGGACT 59.876 33.333 19.14 0.86 44.35 3.85
7 8 7.262048 TGTGTTTCCATCAAACTTTAAAGGAC 58.738 34.615 19.14 3.39 44.35 3.85
8 9 7.411486 TGTGTTTCCATCAAACTTTAAAGGA 57.589 32.000 19.14 7.54 44.35 3.36
9 10 7.171337 CCATGTGTTTCCATCAAACTTTAAAGG 59.829 37.037 19.14 2.13 44.35 3.11
10 11 7.307337 GCCATGTGTTTCCATCAAACTTTAAAG 60.307 37.037 13.76 13.76 44.35 1.85
11 12 6.481644 GCCATGTGTTTCCATCAAACTTTAAA 59.518 34.615 0.00 0.00 44.35 1.52
12 13 5.988561 GCCATGTGTTTCCATCAAACTTTAA 59.011 36.000 0.00 0.00 44.35 1.52
13 14 5.510520 GGCCATGTGTTTCCATCAAACTTTA 60.511 40.000 0.00 0.00 44.35 1.85
14 15 4.379652 GCCATGTGTTTCCATCAAACTTT 58.620 39.130 0.00 0.00 44.35 2.66
15 16 3.244181 GGCCATGTGTTTCCATCAAACTT 60.244 43.478 0.00 0.00 44.35 2.66
16 17 2.299867 GGCCATGTGTTTCCATCAAACT 59.700 45.455 0.00 0.00 44.35 2.66
17 18 2.036992 TGGCCATGTGTTTCCATCAAAC 59.963 45.455 0.00 0.00 44.31 2.93
18 19 2.323599 TGGCCATGTGTTTCCATCAAA 58.676 42.857 0.00 0.00 0.00 2.69
19 20 2.006805 TGGCCATGTGTTTCCATCAA 57.993 45.000 0.00 0.00 0.00 2.57
20 21 2.234896 ATGGCCATGTGTTTCCATCA 57.765 45.000 20.04 0.00 34.43 3.07
727 728 0.329261 TCTTGAGGAGCACCCCATTG 59.671 55.000 0.00 0.00 36.73 2.82
728 729 0.329596 GTCTTGAGGAGCACCCCATT 59.670 55.000 0.00 0.00 36.73 3.16
729 730 0.842030 TGTCTTGAGGAGCACCCCAT 60.842 55.000 0.00 0.00 36.73 4.00
730 731 1.461268 TGTCTTGAGGAGCACCCCA 60.461 57.895 0.00 0.00 36.73 4.96
731 732 1.003233 GTGTCTTGAGGAGCACCCC 60.003 63.158 0.00 0.00 36.73 4.95
732 733 0.603975 GTGTGTCTTGAGGAGCACCC 60.604 60.000 0.00 0.00 36.73 4.61
888 893 2.566570 GGCTAGCTACGGAGAGGCC 61.567 68.421 15.72 4.31 0.00 5.19
918 923 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
919 924 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
920 925 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
921 926 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
922 927 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
923 928 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
924 929 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
925 930 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
926 931 2.070028 GTACACACACACACACACACA 58.930 47.619 0.00 0.00 0.00 3.72
927 932 2.070028 TGTACACACACACACACACAC 58.930 47.619 0.00 0.00 0.00 3.82
928 933 2.457366 TGTACACACACACACACACA 57.543 45.000 0.00 0.00 0.00 3.72
1111 1130 6.070881 CCAAAGTAGCTAGCTAGATGATGGAT 60.071 42.308 24.78 1.75 0.00 3.41
1120 1139 4.759782 TCAAAGCCAAAGTAGCTAGCTAG 58.240 43.478 24.78 16.84 40.49 3.42
1121 1140 4.819105 TCAAAGCCAAAGTAGCTAGCTA 57.181 40.909 20.67 20.67 40.49 3.32
1122 1141 3.703001 TCAAAGCCAAAGTAGCTAGCT 57.297 42.857 23.12 23.12 40.49 3.32
1123 1142 3.001736 CGATCAAAGCCAAAGTAGCTAGC 59.998 47.826 6.62 6.62 40.49 3.42
1133 1152 2.984562 TGTATGCTCGATCAAAGCCAA 58.015 42.857 13.04 0.88 39.05 4.52
1178 1203 1.664649 CCGTTGCACTTCGAGCTGA 60.665 57.895 0.00 0.00 0.00 4.26
1277 1302 0.976073 ATGGGTGCCTACTGCGTAGT 60.976 55.000 11.87 11.87 45.60 2.73
1309 1334 4.081406 ACACTTGCATGCCTCTTAATTCA 58.919 39.130 16.68 0.00 0.00 2.57
1486 1517 4.274705 CACACACAACCACACTAGCAAATA 59.725 41.667 0.00 0.00 0.00 1.40
1487 1518 3.066621 CACACACAACCACACTAGCAAAT 59.933 43.478 0.00 0.00 0.00 2.32
1494 1525 0.253044 AGCTCACACACAACCACACT 59.747 50.000 0.00 0.00 0.00 3.55
1552 1583 7.708051 TCTCGGATTAGATACTTGAAAGTGAG 58.292 38.462 5.95 1.46 40.07 3.51
1652 2011 7.336176 CCCTATTTACTAAGAAGTTCAACACCC 59.664 40.741 5.50 0.00 37.15 4.61
1683 2042 6.099125 GGTGGTACTTGGGCCAAAATATTATT 59.901 38.462 21.28 0.00 36.41 1.40
1686 2045 3.772572 GGTGGTACTTGGGCCAAAATATT 59.227 43.478 21.28 4.94 36.41 1.28
1689 2055 1.133009 TGGTGGTACTTGGGCCAAAAT 60.133 47.619 21.28 13.82 36.41 1.82
1754 2123 8.974060 ACGTATCACATATTCCCTACAAAAAT 57.026 30.769 0.00 0.00 0.00 1.82
1757 2126 9.483916 CAATACGTATCACATATTCCCTACAAA 57.516 33.333 8.86 0.00 0.00 2.83
1758 2127 7.601130 GCAATACGTATCACATATTCCCTACAA 59.399 37.037 8.86 0.00 0.00 2.41
1759 2128 7.039293 AGCAATACGTATCACATATTCCCTACA 60.039 37.037 8.86 0.00 0.00 2.74
1760 2129 7.321153 AGCAATACGTATCACATATTCCCTAC 58.679 38.462 8.86 0.00 0.00 3.18
1761 2130 7.476540 AGCAATACGTATCACATATTCCCTA 57.523 36.000 8.86 0.00 0.00 3.53
1762 2131 6.360370 AGCAATACGTATCACATATTCCCT 57.640 37.500 8.86 0.00 0.00 4.20
1763 2132 7.041372 ACAAAGCAATACGTATCACATATTCCC 60.041 37.037 8.86 0.00 0.00 3.97
1764 2133 7.798516 CACAAAGCAATACGTATCACATATTCC 59.201 37.037 8.86 0.00 0.00 3.01
1765 2134 8.547894 TCACAAAGCAATACGTATCACATATTC 58.452 33.333 8.86 0.00 0.00 1.75
1766 2135 8.335356 GTCACAAAGCAATACGTATCACATATT 58.665 33.333 8.86 0.00 0.00 1.28
1767 2136 7.710907 AGTCACAAAGCAATACGTATCACATAT 59.289 33.333 8.86 0.00 0.00 1.78
1768 2137 7.039270 AGTCACAAAGCAATACGTATCACATA 58.961 34.615 8.86 0.00 0.00 2.29
1769 2138 5.874810 AGTCACAAAGCAATACGTATCACAT 59.125 36.000 8.86 0.00 0.00 3.21
1770 2139 5.234752 AGTCACAAAGCAATACGTATCACA 58.765 37.500 8.86 0.00 0.00 3.58
1771 2140 5.779806 AGTCACAAAGCAATACGTATCAC 57.220 39.130 8.86 4.13 0.00 3.06
1772 2141 5.699001 ACAAGTCACAAAGCAATACGTATCA 59.301 36.000 8.86 0.00 0.00 2.15
1773 2142 6.015504 CACAAGTCACAAAGCAATACGTATC 58.984 40.000 8.86 0.00 0.00 2.24
1774 2143 5.699001 TCACAAGTCACAAAGCAATACGTAT 59.301 36.000 1.14 1.14 0.00 3.06
1775 2144 5.050634 GTCACAAGTCACAAAGCAATACGTA 60.051 40.000 0.00 0.00 0.00 3.57
1776 2145 3.874543 TCACAAGTCACAAAGCAATACGT 59.125 39.130 0.00 0.00 0.00 3.57
1777 2146 4.211389 GTCACAAGTCACAAAGCAATACG 58.789 43.478 0.00 0.00 0.00 3.06
1778 2147 4.970003 GTGTCACAAGTCACAAAGCAATAC 59.030 41.667 0.00 0.00 34.54 1.89
1849 2218 7.138054 AGTAGTAGCCAATTAATAAGCTGGT 57.862 36.000 17.98 9.99 36.79 4.00
1873 2242 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1874 2243 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1875 2244 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1876 2245 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1877 2246 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1878 2247 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1879 2248 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1880 2249 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
1881 2250 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
1882 2251 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
1960 2329 9.906660 CCTGATTTGCTGTTAATTTGTAAAGTA 57.093 29.630 0.00 0.00 0.00 2.24
2166 2537 0.881118 CCAACCGCAAGCATGTTAGT 59.119 50.000 0.00 0.00 0.00 2.24
2221 2594 0.323725 CACCCTGCCAACTATGCCTT 60.324 55.000 0.00 0.00 0.00 4.35
2249 2622 5.289595 CAGAGTGCAGTTTCAGTACTAACA 58.710 41.667 10.42 0.00 31.94 2.41
2282 2655 3.521126 ACTGGCTTGAATATCTGGTGACT 59.479 43.478 0.00 0.00 0.00 3.41
2394 2768 5.879237 TCACATTTAAATCGAATGGCAGTC 58.121 37.500 4.57 4.57 38.50 3.51
2445 2819 4.856664 AGTTATGTAGGTTATGCGAGTCG 58.143 43.478 8.54 8.54 0.00 4.18
2490 2864 7.410120 AAAGTTTGAAACAGGAGACTTGATT 57.590 32.000 11.02 0.00 40.21 2.57
2493 2867 6.749118 CAGAAAAGTTTGAAACAGGAGACTTG 59.251 38.462 11.02 0.00 40.21 3.16
2517 2891 8.325787 ACATGTTAGGTGAATCCACTATTAACA 58.674 33.333 15.46 15.46 41.91 2.41
2787 3166 5.559148 ATTTTGGTGCAAAACATTAGGGA 57.441 34.783 0.00 0.00 44.40 4.20
2800 3179 6.319141 AGAAGAAAGACAGTATTTTGGTGC 57.681 37.500 0.00 0.00 0.00 5.01
2859 3238 4.829064 TTTAAAACGAAGTGCAGCATCT 57.171 36.364 0.00 0.00 45.00 2.90
2878 3257 4.405358 TCTGCAGGAAATGACCAAAGTTTT 59.595 37.500 15.13 0.00 0.00 2.43
3040 3419 6.168270 ACTTAAGCTCAGAAGAAACAGAGT 57.832 37.500 1.29 0.00 0.00 3.24
3116 3509 1.103803 CCTTGCTCAGCTGAATGCAT 58.896 50.000 25.85 0.00 45.94 3.96
3252 3808 5.049267 CGTCAATAACCGGAAAAGGAAGAAA 60.049 40.000 9.46 0.00 34.73 2.52
3271 3827 8.961634 TCATATCAAATTGAATTTACCCGTCAA 58.038 29.630 2.42 0.00 35.83 3.18
3384 3941 1.000993 ATCTCTCTGGGCCGAGTGT 59.999 57.895 15.09 9.46 32.83 3.55
3564 4121 5.345741 CACCGCAATCTGATAAAAACCAAAG 59.654 40.000 0.00 0.00 0.00 2.77
3572 4129 2.288666 GGAGCACCGCAATCTGATAAA 58.711 47.619 0.00 0.00 0.00 1.40
3575 4132 0.463295 CTGGAGCACCGCAATCTGAT 60.463 55.000 0.00 0.00 39.42 2.90
3618 4175 1.612726 GCCTCATTGAGCTTCAGGTGT 60.613 52.381 8.23 0.00 0.00 4.16
3728 4285 5.163258 ACATGGTAGATCTCCATCTGTTTCC 60.163 44.000 18.41 2.37 42.92 3.13
3766 4323 3.005554 CCTGCCATGTCGATAATGGATC 58.994 50.000 26.07 14.15 46.44 3.36
3981 4538 1.348036 GCCTGGTTCTGGTAGAAGTGT 59.652 52.381 0.00 0.00 34.42 3.55
4003 4560 5.050499 CGATCTCACTTACATTCAATCTGGC 60.050 44.000 0.00 0.00 0.00 4.85
4088 4645 3.131400 GCGTCTTCTTCTCCTCCTACAAT 59.869 47.826 0.00 0.00 0.00 2.71
4142 4699 0.960861 TTGTTGCCACACGGTTGACA 60.961 50.000 0.00 0.00 30.32 3.58
4157 4714 3.119316 TCCATTCGTTTGCTGTTGTTGTT 60.119 39.130 0.00 0.00 0.00 2.83
4184 4741 4.891168 ACTGGCATCAATTTATCAGCATCA 59.109 37.500 0.00 0.00 0.00 3.07
4422 4979 0.397564 TGAGTGCTCATGGTTGCTCA 59.602 50.000 0.00 0.00 34.14 4.26
4539 5096 3.317711 CACTGGCAGGTGTGTTGAATTTA 59.682 43.478 20.34 0.00 33.04 1.40
4544 5101 0.179048 CTCACTGGCAGGTGTGTTGA 60.179 55.000 20.34 11.00 38.28 3.18
4650 5207 3.819368 TCTCTTGTCAACAATGCCTTCA 58.181 40.909 0.00 0.00 35.02 3.02
4790 5347 2.567169 TCCTTTCTAGCAGCAGCAGTTA 59.433 45.455 3.17 0.00 45.49 2.24
4860 5417 2.275134 TGTTCTCTTTGCCAGCATCA 57.725 45.000 0.00 0.00 0.00 3.07
4976 5533 0.601311 GCGCTGAACTCCACAGTCTT 60.601 55.000 0.00 0.00 37.64 3.01
5075 5632 3.655777 TCCTTAGTTTCCCCTGTTGTCAT 59.344 43.478 0.00 0.00 0.00 3.06
5078 5635 4.741928 ATTCCTTAGTTTCCCCTGTTGT 57.258 40.909 0.00 0.00 0.00 3.32
5135 5692 9.027202 TCACTTACCAGTACATGATAACTGTTA 57.973 33.333 19.08 2.26 41.25 2.41
5181 5738 7.383102 TCTGCAAATAATTTTCTCAGAGTCC 57.617 36.000 0.00 0.00 31.64 3.85
5301 5920 8.244113 GTCCTTTTTGTATCCCTTGAAACATAG 58.756 37.037 0.00 0.00 0.00 2.23
5306 5925 4.836175 GGGTCCTTTTTGTATCCCTTGAAA 59.164 41.667 0.00 0.00 32.89 2.69
5320 5939 4.077108 GTTCAGGTATTTCGGGTCCTTTT 58.923 43.478 0.00 0.00 0.00 2.27
5322 5941 2.910977 AGTTCAGGTATTTCGGGTCCTT 59.089 45.455 0.00 0.00 0.00 3.36
5323 5942 2.547990 AGTTCAGGTATTTCGGGTCCT 58.452 47.619 0.00 0.00 0.00 3.85
5324 5943 3.055312 AGAAGTTCAGGTATTTCGGGTCC 60.055 47.826 5.50 0.00 0.00 4.46
5325 5944 4.203654 AGAAGTTCAGGTATTTCGGGTC 57.796 45.455 5.50 0.00 0.00 4.46
5326 5945 4.635699 AAGAAGTTCAGGTATTTCGGGT 57.364 40.909 5.50 0.00 0.00 5.28
5328 5947 5.001232 TCCAAAGAAGTTCAGGTATTTCGG 58.999 41.667 5.50 2.28 0.00 4.30
5329 5948 6.595716 AGATCCAAAGAAGTTCAGGTATTTCG 59.404 38.462 5.50 0.00 0.00 3.46
5330 5949 7.929941 AGATCCAAAGAAGTTCAGGTATTTC 57.070 36.000 5.50 2.21 0.00 2.17
5332 5951 9.807921 TTTTAGATCCAAAGAAGTTCAGGTATT 57.192 29.630 5.50 0.00 0.00 1.89
5333 5952 9.981460 ATTTTAGATCCAAAGAAGTTCAGGTAT 57.019 29.630 5.50 0.90 0.00 2.73
5334 5953 9.807921 AATTTTAGATCCAAAGAAGTTCAGGTA 57.192 29.630 5.50 0.00 0.00 3.08
5360 5980 7.925483 CACCTGTATGAAACAAAGAAATGGAAA 59.075 33.333 0.00 0.00 37.74 3.13
5361 5981 7.432869 CACCTGTATGAAACAAAGAAATGGAA 58.567 34.615 0.00 0.00 37.74 3.53
5363 5983 5.634859 GCACCTGTATGAAACAAAGAAATGG 59.365 40.000 0.00 0.00 37.74 3.16
5395 6015 7.253750 GGCACGCATGTTCTTAGAAATAAATTG 60.254 37.037 0.00 0.00 0.00 2.32
5416 6036 1.808945 AGAAAATTGCAGAGAGGCACG 59.191 47.619 0.00 0.00 44.86 5.34
5432 6052 6.379703 TCAAACAATCTCCCAAGTTGAAGAAA 59.620 34.615 3.87 0.00 0.00 2.52
5468 6088 1.073763 ACAGAACAACATGGCCTGCTA 59.926 47.619 3.32 0.00 0.00 3.49
5476 6096 9.604626 GAGAGAATAAAGAAACAGAACAACATG 57.395 33.333 0.00 0.00 0.00 3.21
5486 6106 7.931407 TGCTGTACAAGAGAGAATAAAGAAACA 59.069 33.333 0.00 0.00 0.00 2.83
5584 6206 5.645929 CAGTACCATTACATTAGCACCAACA 59.354 40.000 0.00 0.00 0.00 3.33
5594 6216 7.406916 TGTATTGTTCCCAGTACCATTACATT 58.593 34.615 0.00 0.00 33.97 2.71
5604 6226 6.472887 CCTTCTCTTTGTATTGTTCCCAGTA 58.527 40.000 0.00 0.00 0.00 2.74
5714 6336 3.033909 AGGGACAGTGATGAATCGATCA 58.966 45.455 0.00 0.00 43.67 2.92
5719 6341 9.956720 CATTTTTATAAGGGACAGTGATGAATC 57.043 33.333 0.00 0.00 0.00 2.52
5720 6342 8.917088 CCATTTTTATAAGGGACAGTGATGAAT 58.083 33.333 0.00 0.00 0.00 2.57
5722 6344 7.638444 TCCATTTTTATAAGGGACAGTGATGA 58.362 34.615 0.00 0.00 0.00 2.92
5770 6400 6.581171 AACAGAGAAATTCCACAAGAATCC 57.419 37.500 0.00 0.00 44.75 3.01
5862 6496 7.496591 AGCACTTTTCATTTTCATGATGTTTGT 59.503 29.630 0.00 0.00 39.28 2.83
5868 6515 7.333423 CCAATGAGCACTTTTCATTTTCATGAT 59.667 33.333 0.00 0.00 41.91 2.45
5871 6518 5.410439 GCCAATGAGCACTTTTCATTTTCAT 59.590 36.000 0.00 0.00 41.91 2.57
5987 6634 5.122869 GCACATCTCATAGTTTCTGCTTTCA 59.877 40.000 0.00 0.00 0.00 2.69
6022 6669 3.639672 TTCCTATTTTCCCTCCCGTTC 57.360 47.619 0.00 0.00 0.00 3.95
6025 6672 3.359695 TGTTTCCTATTTTCCCTCCCG 57.640 47.619 0.00 0.00 0.00 5.14
6026 6673 5.269189 TCATTGTTTCCTATTTTCCCTCCC 58.731 41.667 0.00 0.00 0.00 4.30
6039 6686 4.381292 CCAGAGAGCCATTTCATTGTTTCC 60.381 45.833 0.00 0.00 0.00 3.13
6041 6688 4.410099 TCCAGAGAGCCATTTCATTGTTT 58.590 39.130 0.00 0.00 0.00 2.83
6042 6689 4.015084 CTCCAGAGAGCCATTTCATTGTT 58.985 43.478 0.00 0.00 32.13 2.83
6063 6710 3.788227 TGCCCTGTACTCATTTTGTCT 57.212 42.857 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.