Multiple sequence alignment - TraesCS4B01G245100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G245100 chr4B 100.000 5964 0 0 1 5964 506928821 506922858 0.000000e+00 11014.0
1 TraesCS4B01G245100 chr4B 92.442 172 11 2 1445 1614 192259703 192259874 1.660000e-60 244.0
2 TraesCS4B01G245100 chr4D 97.012 1874 47 7 1854 3724 409141640 409143507 0.000000e+00 3142.0
3 TraesCS4B01G245100 chr4D 95.562 1487 41 5 4481 5964 409143990 409145454 0.000000e+00 2357.0
4 TraesCS4B01G245100 chr4D 93.408 622 12 8 849 1449 409140715 409141328 0.000000e+00 894.0
5 TraesCS4B01G245100 chr4D 90.161 498 36 8 3882 4376 409143505 409143992 2.340000e-178 636.0
6 TraesCS4B01G245100 chr4D 95.200 250 6 4 1608 1856 409141327 409141571 2.020000e-104 390.0
7 TraesCS4B01G245100 chr4D 94.048 168 9 1 1445 1611 468208641 468208808 2.760000e-63 254.0
8 TraesCS4B01G245100 chr4D 95.541 157 6 1 1634 1789 34661526 34661682 3.570000e-62 250.0
9 TraesCS4B01G245100 chr4D 94.268 157 8 1 1634 1789 435010368 435010524 7.720000e-59 239.0
10 TraesCS4B01G245100 chr4D 85.119 168 13 4 4444 4602 409143988 409143824 1.720000e-35 161.0
11 TraesCS4B01G245100 chr4D 90.323 124 10 1 4204 4327 409144109 409143988 1.720000e-35 161.0
12 TraesCS4B01G245100 chr4D 90.566 53 5 0 21 73 433349377 433349429 2.980000e-08 71.3
13 TraesCS4B01G245100 chr4D 100.000 29 0 0 46 74 473868258 473868230 3.000000e-03 54.7
14 TraesCS4B01G245100 chr4A 94.313 1811 78 15 1928 3724 80841428 80843227 0.000000e+00 2750.0
15 TraesCS4B01G245100 chr4A 94.899 1490 53 8 4481 5964 80843900 80845372 0.000000e+00 2309.0
16 TraesCS4B01G245100 chr4A 90.303 495 41 5 3882 4376 80843225 80843712 5.040000e-180 641.0
17 TraesCS4B01G245100 chr4A 89.727 477 30 11 950 1423 80840617 80841077 5.150000e-165 592.0
18 TraesCS4B01G245100 chr4A 94.512 164 8 1 1448 1610 662287221 662287058 9.920000e-63 252.0
19 TraesCS4B01G245100 chr4A 94.268 157 8 1 1634 1789 36388445 36388601 7.720000e-59 239.0
20 TraesCS4B01G245100 chr4A 92.216 167 13 0 3723 3889 517406632 517406466 2.780000e-58 237.0
21 TraesCS4B01G245100 chr4A 85.542 166 15 1 4444 4600 80843708 80843543 1.330000e-36 165.0
22 TraesCS4B01G245100 chr4A 87.903 124 13 1 4204 4327 80844019 80843898 1.730000e-30 145.0
23 TraesCS4B01G245100 chr4A 82.178 101 12 5 21 118 563357800 563357703 1.380000e-11 82.4
24 TraesCS4B01G245100 chr6B 94.484 834 37 7 1 833 676869853 676870678 0.000000e+00 1277.0
25 TraesCS4B01G245100 chr6B 89.881 840 59 14 1 834 34198905 34199724 0.000000e+00 1057.0
26 TraesCS4B01G245100 chr3B 91.459 843 60 11 1 834 558192628 558193467 0.000000e+00 1147.0
27 TraesCS4B01G245100 chr3B 90.643 171 16 0 3714 3884 112325128 112325298 1.670000e-55 228.0
28 TraesCS4B01G245100 chr2D 90.633 758 53 10 76 826 435169406 435170152 0.000000e+00 990.0
29 TraesCS4B01G245100 chr2D 94.268 157 8 1 1634 1789 134301487 134301643 7.720000e-59 239.0
30 TraesCS4B01G245100 chr2D 90.751 173 14 2 3716 3888 624881780 624881950 4.650000e-56 230.0
31 TraesCS4B01G245100 chr3A 89.921 764 61 10 76 834 63567961 63567209 0.000000e+00 970.0
32 TraesCS4B01G245100 chr3A 81.188 101 13 5 21 118 746410227 746410130 6.410000e-10 76.8
33 TraesCS4B01G245100 chr3A 95.745 47 1 1 4198 4244 214725661 214725706 2.310000e-09 75.0
34 TraesCS4B01G245100 chr1B 89.447 777 64 9 61 832 57042427 57041664 0.000000e+00 965.0
35 TraesCS4B01G245100 chr1B 88.378 783 71 12 57 832 57067670 57066901 0.000000e+00 924.0
36 TraesCS4B01G245100 chr1B 90.063 634 55 8 38 666 57136129 57135499 0.000000e+00 815.0
37 TraesCS4B01G245100 chr1B 80.779 411 42 25 446 833 120635245 120635641 2.720000e-73 287.0
38 TraesCS4B01G245100 chr1B 94.186 172 9 1 1439 1609 370161644 370161815 1.650000e-65 261.0
39 TraesCS4B01G245100 chr1B 86.667 120 11 4 39 156 120634917 120635033 1.740000e-25 128.0
40 TraesCS4B01G245100 chr6A 89.700 767 60 11 76 834 457681271 457682026 0.000000e+00 961.0
41 TraesCS4B01G245100 chr6A 97.619 42 0 1 4203 4244 413290026 413289986 2.980000e-08 71.3
42 TraesCS4B01G245100 chr6A 87.037 54 5 2 21 73 58006607 58006555 6.450000e-05 60.2
43 TraesCS4B01G245100 chr5A 89.150 765 61 9 76 833 48633073 48633822 0.000000e+00 933.0
44 TraesCS4B01G245100 chr5A 91.129 124 9 2 4481 4602 395915609 395915486 3.700000e-37 167.0
45 TraesCS4B01G245100 chr7D 95.122 164 7 1 1448 1610 224070725 224070888 2.130000e-64 257.0
46 TraesCS4B01G245100 chr7D 92.453 53 1 3 4192 4244 10814686 10814735 8.290000e-09 73.1
47 TraesCS4B01G245100 chr7D 80.392 102 15 5 21 117 507239634 507239533 8.290000e-09 73.1
48 TraesCS4B01G245100 chr7D 87.037 54 7 0 15 68 41795308 41795361 1.790000e-05 62.1
49 TraesCS4B01G245100 chr2B 95.122 164 7 1 1448 1610 154464957 154464794 2.130000e-64 257.0
50 TraesCS4B01G245100 chr2B 94.512 164 8 1 1448 1610 133025859 133025696 9.920000e-63 252.0
51 TraesCS4B01G245100 chr2B 94.479 163 8 1 1628 1789 608226718 608226880 3.570000e-62 250.0
52 TraesCS4B01G245100 chr2B 91.667 168 14 0 3722 3889 66994643 66994810 3.590000e-57 233.0
53 TraesCS4B01G245100 chr5B 93.064 173 10 2 1442 1612 701551642 701551814 9.920000e-63 252.0
54 TraesCS4B01G245100 chr5B 91.111 45 3 1 4562 4606 221399520 221399477 6.450000e-05 60.2
55 TraesCS4B01G245100 chr5D 91.667 180 12 2 1432 1610 429977831 429978008 4.620000e-61 246.0
56 TraesCS4B01G245100 chr5D 94.872 156 7 1 1635 1789 377988002 377988157 5.970000e-60 243.0
57 TraesCS4B01G245100 chr5D 94.872 156 7 1 1635 1789 529218166 529218321 5.970000e-60 243.0
58 TraesCS4B01G245100 chr5D 92.638 163 12 0 3723 3885 53583077 53583239 9.990000e-58 235.0
59 TraesCS4B01G245100 chr5D 92.000 50 2 2 4205 4254 551289215 551289262 1.070000e-07 69.4
60 TraesCS4B01G245100 chr7B 94.304 158 6 3 1638 1792 518918284 518918127 7.720000e-59 239.0
61 TraesCS4B01G245100 chr7B 91.329 173 15 0 3715 3887 176003000 176002828 2.780000e-58 237.0
62 TraesCS4B01G245100 chr7B 92.121 165 13 0 3723 3887 650609092 650608928 3.590000e-57 233.0
63 TraesCS4B01G245100 chr7B 91.228 171 13 1 3721 3891 618334175 618334343 1.290000e-56 231.0
64 TraesCS4B01G245100 chr7B 91.228 171 13 1 3721 3891 618761188 618761020 1.290000e-56 231.0
65 TraesCS4B01G245100 chr7B 88.430 121 12 2 38 157 18193445 18193564 1.730000e-30 145.0
66 TraesCS4B01G245100 chr1D 85.380 171 12 10 671 840 225049505 225049663 1.330000e-36 165.0
67 TraesCS4B01G245100 chr1D 89.256 121 11 2 38 157 225047856 225047975 3.720000e-32 150.0
68 TraesCS4B01G245100 chr7A 94.118 51 0 3 4194 4244 15282635 15282682 2.310000e-09 75.0
69 TraesCS4B01G245100 chr7A 95.455 44 1 1 4562 4604 492129399 492129356 1.070000e-07 69.4
70 TraesCS4B01G245100 chr7A 86.538 52 3 4 770 819 638841211 638841260 3.000000e-03 54.7
71 TraesCS4B01G245100 chr1A 97.500 40 1 0 4562 4601 386341455 386341416 1.070000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G245100 chr4B 506922858 506928821 5963 True 11014.0 11014 100.0000 1 5964 1 chr4B.!!$R1 5963
1 TraesCS4B01G245100 chr4D 409140715 409145454 4739 False 1483.8 3142 94.2686 849 5964 5 chr4D.!!$F5 5115
2 TraesCS4B01G245100 chr4A 80840617 80845372 4755 False 1573.0 2750 92.3105 950 5964 4 chr4A.!!$F2 5014
3 TraesCS4B01G245100 chr6B 676869853 676870678 825 False 1277.0 1277 94.4840 1 833 1 chr6B.!!$F2 832
4 TraesCS4B01G245100 chr6B 34198905 34199724 819 False 1057.0 1057 89.8810 1 834 1 chr6B.!!$F1 833
5 TraesCS4B01G245100 chr3B 558192628 558193467 839 False 1147.0 1147 91.4590 1 834 1 chr3B.!!$F2 833
6 TraesCS4B01G245100 chr2D 435169406 435170152 746 False 990.0 990 90.6330 76 826 1 chr2D.!!$F2 750
7 TraesCS4B01G245100 chr3A 63567209 63567961 752 True 970.0 970 89.9210 76 834 1 chr3A.!!$R1 758
8 TraesCS4B01G245100 chr1B 57041664 57042427 763 True 965.0 965 89.4470 61 832 1 chr1B.!!$R1 771
9 TraesCS4B01G245100 chr1B 57066901 57067670 769 True 924.0 924 88.3780 57 832 1 chr1B.!!$R2 775
10 TraesCS4B01G245100 chr1B 57135499 57136129 630 True 815.0 815 90.0630 38 666 1 chr1B.!!$R3 628
11 TraesCS4B01G245100 chr1B 120634917 120635641 724 False 207.5 287 83.7230 39 833 2 chr1B.!!$F2 794
12 TraesCS4B01G245100 chr6A 457681271 457682026 755 False 961.0 961 89.7000 76 834 1 chr6A.!!$F1 758
13 TraesCS4B01G245100 chr5A 48633073 48633822 749 False 933.0 933 89.1500 76 833 1 chr5A.!!$F1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 195 0.527565 CCCCGATTCCAGCAAAACAG 59.472 55.000 0.00 0.0 0.00 3.16 F
947 1109 1.073199 CAAGTTGGTTCGCCCTCCT 59.927 57.895 0.00 0.0 36.08 3.69 F
1510 1779 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.0 0.00 4.26 F
1511 1780 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.0 0.00 3.91 F
1512 1781 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.0 0.00 3.68 F
1563 1832 2.708216 ATGCATCCGTATGTGGTTCA 57.292 45.000 0.00 0.0 35.38 3.18 F
3517 3873 0.394762 TGATGGCAGAACTGGATGGC 60.395 55.000 3.99 0.0 42.01 4.40 F
4317 4676 0.244721 TCCACAGATCAGCTCACACG 59.755 55.000 0.00 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1596 1865 0.252103 TGGCTTCTACTCCCTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44 R
2638 2993 1.134848 CAGGCTCAAGTCTAGACCAGC 60.135 57.143 22.41 22.41 0.00 4.85 R
3010 3366 0.520404 CAGAACTGGCATGTGCTGAC 59.480 55.000 15.85 0.00 44.38 3.51 R
3342 3698 5.104817 CCAGGTGGATCCATTAAAAAGCATT 60.105 40.000 19.62 0.00 39.02 3.56 R
3517 3873 0.748450 TATCTGTTCCCCGGTAAGCG 59.252 55.000 0.00 0.00 0.00 4.68 R
3547 3903 6.473778 CAGAAAGTATGTACCTTGACATCTCG 59.526 42.308 0.00 0.00 40.54 4.04 R
4429 4788 0.030369 GCCATGTCTAGCTTGCATGC 59.970 55.000 16.37 16.37 38.79 4.06 R
5557 6002 0.543749 AGGTGCACAATCTAGGAGGC 59.456 55.000 20.43 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
184 190 1.925285 ATGAGCCCCGATTCCAGCAA 61.925 55.000 0.00 0.00 0.00 3.91
189 195 0.527565 CCCCGATTCCAGCAAAACAG 59.472 55.000 0.00 0.00 0.00 3.16
220 227 6.071616 GGTGGTAGCAAAAACTTGAATGGATA 60.072 38.462 0.00 0.00 0.00 2.59
285 294 2.871633 CCAGCAAAAACAATGGTTCCAC 59.128 45.455 0.00 0.00 35.82 4.02
437 569 1.606601 TCGTGCAGTAGGAGCCAGT 60.607 57.895 0.00 0.00 0.00 4.00
493 628 1.141881 GCATCCGACGATGTCCACT 59.858 57.895 0.00 0.00 46.56 4.00
636 779 1.847798 AAACTGGGCGCTGGGATACA 61.848 55.000 7.64 0.00 39.74 2.29
846 1007 8.582433 AAACATTACCCTTACAAAAATGAACG 57.418 30.769 0.00 0.00 32.99 3.95
847 1008 6.683715 ACATTACCCTTACAAAAATGAACGG 58.316 36.000 0.00 0.00 32.99 4.44
848 1009 6.490721 ACATTACCCTTACAAAAATGAACGGA 59.509 34.615 0.00 0.00 32.99 4.69
849 1010 6.563222 TTACCCTTACAAAAATGAACGGAG 57.437 37.500 0.00 0.00 0.00 4.63
850 1011 3.824443 ACCCTTACAAAAATGAACGGAGG 59.176 43.478 0.00 0.00 0.00 4.30
851 1012 4.076394 CCCTTACAAAAATGAACGGAGGA 58.924 43.478 0.00 0.00 0.00 3.71
852 1013 4.521256 CCCTTACAAAAATGAACGGAGGAA 59.479 41.667 0.00 0.00 0.00 3.36
853 1014 5.335661 CCCTTACAAAAATGAACGGAGGAAG 60.336 44.000 0.00 0.00 0.00 3.46
902 1064 5.279685 TCTTTATTTAAGGACTCCCGGGTA 58.720 41.667 22.86 6.41 37.58 3.69
947 1109 1.073199 CAAGTTGGTTCGCCCTCCT 59.927 57.895 0.00 0.00 36.08 3.69
1103 1284 2.665603 GAGCGGCTCCAAGTTCCT 59.334 61.111 19.20 0.00 0.00 3.36
1456 1725 7.912056 AATTCGGTTAGTTTTTACTACCTCC 57.088 36.000 0.00 0.00 0.00 4.30
1457 1726 5.059404 TCGGTTAGTTTTTACTACCTCCG 57.941 43.478 12.38 12.38 35.07 4.63
1458 1727 4.522789 TCGGTTAGTTTTTACTACCTCCGT 59.477 41.667 15.46 0.00 35.18 4.69
1459 1728 5.010617 TCGGTTAGTTTTTACTACCTCCGTT 59.989 40.000 15.46 0.00 35.18 4.44
1460 1729 5.346011 CGGTTAGTTTTTACTACCTCCGTTC 59.654 44.000 0.00 0.00 32.25 3.95
1461 1730 5.639506 GGTTAGTTTTTACTACCTCCGTTCC 59.360 44.000 0.00 0.00 0.00 3.62
1462 1731 6.459066 GTTAGTTTTTACTACCTCCGTTCCT 58.541 40.000 0.00 0.00 0.00 3.36
1463 1732 7.309805 GGTTAGTTTTTACTACCTCCGTTCCTA 60.310 40.741 0.00 0.00 0.00 2.94
1464 1733 6.670695 AGTTTTTACTACCTCCGTTCCTAA 57.329 37.500 0.00 0.00 0.00 2.69
1465 1734 7.066307 AGTTTTTACTACCTCCGTTCCTAAA 57.934 36.000 0.00 0.00 0.00 1.85
1466 1735 7.683578 AGTTTTTACTACCTCCGTTCCTAAAT 58.316 34.615 0.00 0.00 0.00 1.40
1467 1736 8.815912 AGTTTTTACTACCTCCGTTCCTAAATA 58.184 33.333 0.00 0.00 0.00 1.40
1468 1737 9.605275 GTTTTTACTACCTCCGTTCCTAAATAT 57.395 33.333 0.00 0.00 0.00 1.28
1472 1741 9.646522 TTACTACCTCCGTTCCTAAATATAAGT 57.353 33.333 0.00 0.00 0.00 2.24
1473 1742 8.175925 ACTACCTCCGTTCCTAAATATAAGTC 57.824 38.462 0.00 0.00 0.00 3.01
1474 1743 8.003629 ACTACCTCCGTTCCTAAATATAAGTCT 58.996 37.037 0.00 0.00 0.00 3.24
1475 1744 7.672122 ACCTCCGTTCCTAAATATAAGTCTT 57.328 36.000 0.00 0.00 0.00 3.01
1476 1745 8.087303 ACCTCCGTTCCTAAATATAAGTCTTT 57.913 34.615 0.00 0.00 0.00 2.52
1477 1746 8.202811 ACCTCCGTTCCTAAATATAAGTCTTTC 58.797 37.037 0.00 0.00 0.00 2.62
1478 1747 8.422566 CCTCCGTTCCTAAATATAAGTCTTTCT 58.577 37.037 0.00 0.00 0.00 2.52
1479 1748 9.250624 CTCCGTTCCTAAATATAAGTCTTTCTG 57.749 37.037 0.00 0.00 0.00 3.02
1480 1749 8.202137 TCCGTTCCTAAATATAAGTCTTTCTGG 58.798 37.037 0.00 0.00 0.00 3.86
1481 1750 7.441458 CCGTTCCTAAATATAAGTCTTTCTGGG 59.559 40.741 0.00 0.00 0.00 4.45
1482 1751 8.202137 CGTTCCTAAATATAAGTCTTTCTGGGA 58.798 37.037 0.00 0.00 0.00 4.37
1486 1755 9.508642 CCTAAATATAAGTCTTTCTGGGATTCC 57.491 37.037 0.00 0.00 0.00 3.01
1489 1758 9.942526 AAATATAAGTCTTTCTGGGATTCCATT 57.057 29.630 4.80 0.00 43.11 3.16
1492 1761 5.379706 AGTCTTTCTGGGATTCCATTAGG 57.620 43.478 4.80 0.00 43.11 2.69
1493 1762 4.790790 AGTCTTTCTGGGATTCCATTAGGT 59.209 41.667 4.80 0.00 43.11 3.08
1494 1763 4.884164 GTCTTTCTGGGATTCCATTAGGTG 59.116 45.833 4.80 0.00 43.11 4.00
1508 1777 5.122512 CATTAGGTGGACTACATACGGAG 57.877 47.826 0.00 0.00 0.00 4.63
1509 1778 1.400737 AGGTGGACTACATACGGAGC 58.599 55.000 0.00 0.00 0.00 4.70
1510 1779 1.108776 GGTGGACTACATACGGAGCA 58.891 55.000 0.00 0.00 0.00 4.26
1511 1780 1.479323 GGTGGACTACATACGGAGCAA 59.521 52.381 0.00 0.00 0.00 3.91
1512 1781 2.093869 GGTGGACTACATACGGAGCAAA 60.094 50.000 0.00 0.00 0.00 3.68
1513 1782 3.592059 GTGGACTACATACGGAGCAAAA 58.408 45.455 0.00 0.00 0.00 2.44
1514 1783 4.189231 GTGGACTACATACGGAGCAAAAT 58.811 43.478 0.00 0.00 0.00 1.82
1515 1784 4.034048 GTGGACTACATACGGAGCAAAATG 59.966 45.833 0.00 0.00 0.00 2.32
1516 1785 4.081365 TGGACTACATACGGAGCAAAATGA 60.081 41.667 0.00 0.00 0.00 2.57
1517 1786 4.873827 GGACTACATACGGAGCAAAATGAA 59.126 41.667 0.00 0.00 0.00 2.57
1518 1787 5.527582 GGACTACATACGGAGCAAAATGAAT 59.472 40.000 0.00 0.00 0.00 2.57
1519 1788 6.363577 ACTACATACGGAGCAAAATGAATG 57.636 37.500 0.00 0.00 0.00 2.67
1520 1789 6.112734 ACTACATACGGAGCAAAATGAATGA 58.887 36.000 0.00 0.00 0.00 2.57
1521 1790 5.895636 ACATACGGAGCAAAATGAATGAA 57.104 34.783 0.00 0.00 0.00 2.57
1522 1791 6.455360 ACATACGGAGCAAAATGAATGAAT 57.545 33.333 0.00 0.00 0.00 2.57
1523 1792 6.498304 ACATACGGAGCAAAATGAATGAATC 58.502 36.000 0.00 0.00 0.00 2.52
1524 1793 6.319658 ACATACGGAGCAAAATGAATGAATCT 59.680 34.615 0.00 0.00 0.00 2.40
1525 1794 7.498900 ACATACGGAGCAAAATGAATGAATCTA 59.501 33.333 0.00 0.00 0.00 1.98
1526 1795 6.757897 ACGGAGCAAAATGAATGAATCTAA 57.242 33.333 0.00 0.00 0.00 2.10
1527 1796 7.156876 ACGGAGCAAAATGAATGAATCTAAA 57.843 32.000 0.00 0.00 0.00 1.85
1528 1797 7.029563 ACGGAGCAAAATGAATGAATCTAAAC 58.970 34.615 0.00 0.00 0.00 2.01
1529 1798 7.094205 ACGGAGCAAAATGAATGAATCTAAACT 60.094 33.333 0.00 0.00 0.00 2.66
1530 1799 7.756722 CGGAGCAAAATGAATGAATCTAAACTT 59.243 33.333 0.00 0.00 0.00 2.66
1560 1829 5.664457 CATCTATATGCATCCGTATGTGGT 58.336 41.667 0.19 0.00 35.38 4.16
1561 1830 5.738619 TCTATATGCATCCGTATGTGGTT 57.261 39.130 0.19 0.00 35.38 3.67
1562 1831 5.720202 TCTATATGCATCCGTATGTGGTTC 58.280 41.667 0.19 0.00 35.38 3.62
1563 1832 2.708216 ATGCATCCGTATGTGGTTCA 57.292 45.000 0.00 0.00 35.38 3.18
1564 1833 2.708216 TGCATCCGTATGTGGTTCAT 57.292 45.000 0.00 0.00 40.25 2.57
1565 1834 3.828875 TGCATCCGTATGTGGTTCATA 57.171 42.857 0.00 0.00 37.91 2.15
1566 1835 3.727726 TGCATCCGTATGTGGTTCATAG 58.272 45.455 0.00 0.00 39.36 2.23
1567 1836 3.133901 TGCATCCGTATGTGGTTCATAGT 59.866 43.478 0.00 0.00 39.36 2.12
1568 1837 3.494626 GCATCCGTATGTGGTTCATAGTG 59.505 47.826 0.00 0.00 39.36 2.74
1569 1838 3.812156 TCCGTATGTGGTTCATAGTGG 57.188 47.619 0.00 0.00 39.36 4.00
1570 1839 3.367321 TCCGTATGTGGTTCATAGTGGA 58.633 45.455 0.00 0.00 39.94 4.02
1571 1840 3.770388 TCCGTATGTGGTTCATAGTGGAA 59.230 43.478 0.00 0.00 39.60 3.53
1572 1841 4.407621 TCCGTATGTGGTTCATAGTGGAAT 59.592 41.667 0.00 0.00 39.60 3.01
1573 1842 4.750098 CCGTATGTGGTTCATAGTGGAATC 59.250 45.833 0.00 0.00 39.36 2.52
1574 1843 5.453339 CCGTATGTGGTTCATAGTGGAATCT 60.453 44.000 0.00 0.00 39.36 2.40
1575 1844 5.692204 CGTATGTGGTTCATAGTGGAATCTC 59.308 44.000 0.00 0.00 39.36 2.75
1576 1845 5.965033 ATGTGGTTCATAGTGGAATCTCT 57.035 39.130 0.00 0.00 34.67 3.10
1577 1846 7.255486 CGTATGTGGTTCATAGTGGAATCTCTA 60.255 40.741 0.00 0.00 39.36 2.43
1578 1847 6.222038 TGTGGTTCATAGTGGAATCTCTAC 57.778 41.667 0.00 0.00 0.00 2.59
1579 1848 5.719563 TGTGGTTCATAGTGGAATCTCTACA 59.280 40.000 0.00 0.00 29.47 2.74
1580 1849 6.212589 TGTGGTTCATAGTGGAATCTCTACAA 59.787 38.462 0.00 0.00 29.47 2.41
1581 1850 7.103641 GTGGTTCATAGTGGAATCTCTACAAA 58.896 38.462 0.00 0.00 29.47 2.83
1582 1851 7.278868 GTGGTTCATAGTGGAATCTCTACAAAG 59.721 40.741 0.00 0.00 29.47 2.77
1583 1852 7.180229 TGGTTCATAGTGGAATCTCTACAAAGA 59.820 37.037 0.00 0.00 29.47 2.52
1584 1853 7.492994 GGTTCATAGTGGAATCTCTACAAAGAC 59.507 40.741 0.00 0.00 29.47 3.01
1585 1854 7.962995 TCATAGTGGAATCTCTACAAAGACT 57.037 36.000 0.00 0.00 29.47 3.24
1586 1855 8.367660 TCATAGTGGAATCTCTACAAAGACTT 57.632 34.615 0.00 0.00 29.47 3.01
1587 1856 9.475620 TCATAGTGGAATCTCTACAAAGACTTA 57.524 33.333 0.00 0.00 29.47 2.24
1588 1857 9.522804 CATAGTGGAATCTCTACAAAGACTTAC 57.477 37.037 0.00 0.00 29.47 2.34
1589 1858 7.540474 AGTGGAATCTCTACAAAGACTTACA 57.460 36.000 0.00 0.00 29.47 2.41
1590 1859 8.140112 AGTGGAATCTCTACAAAGACTTACAT 57.860 34.615 0.00 0.00 29.47 2.29
1591 1860 8.598041 AGTGGAATCTCTACAAAGACTTACATT 58.402 33.333 0.00 0.00 29.47 2.71
1592 1861 9.220767 GTGGAATCTCTACAAAGACTTACATTT 57.779 33.333 0.00 0.00 0.00 2.32
1600 1869 9.199982 TCTACAAAGACTTACATTTAAGAACGG 57.800 33.333 5.64 0.00 37.49 4.44
1601 1870 9.199982 CTACAAAGACTTACATTTAAGAACGGA 57.800 33.333 5.64 0.00 37.49 4.69
1602 1871 8.084590 ACAAAGACTTACATTTAAGAACGGAG 57.915 34.615 5.64 0.00 37.49 4.63
1603 1872 7.172703 ACAAAGACTTACATTTAAGAACGGAGG 59.827 37.037 5.64 0.00 37.49 4.30
1604 1873 5.731591 AGACTTACATTTAAGAACGGAGGG 58.268 41.667 5.64 0.00 37.49 4.30
1605 1874 5.482878 AGACTTACATTTAAGAACGGAGGGA 59.517 40.000 5.64 0.00 37.49 4.20
1606 1875 5.731591 ACTTACATTTAAGAACGGAGGGAG 58.268 41.667 5.64 0.00 37.49 4.30
1607 1876 5.247792 ACTTACATTTAAGAACGGAGGGAGT 59.752 40.000 5.64 0.00 37.49 3.85
1608 1877 6.438425 ACTTACATTTAAGAACGGAGGGAGTA 59.562 38.462 5.64 0.00 37.49 2.59
1660 1930 7.724287 ACTTCCTCCGTTCCTAAATATAAGTC 58.276 38.462 0.00 0.00 0.00 3.01
1795 2065 9.364653 ACTTATATTTAGGAACGGAGATACTGT 57.635 33.333 0.00 0.00 40.17 3.55
1798 2068 8.937207 ATATTTAGGAACGGAGATACTGTAGT 57.063 34.615 0.00 0.00 37.07 2.73
1800 2070 7.798596 TTTAGGAACGGAGATACTGTAGTAG 57.201 40.000 0.00 0.00 37.07 2.57
1801 2071 5.627182 AGGAACGGAGATACTGTAGTAGA 57.373 43.478 0.00 0.00 37.07 2.59
1802 2072 6.190346 AGGAACGGAGATACTGTAGTAGAT 57.810 41.667 0.00 0.00 37.07 1.98
1803 2073 7.313740 AGGAACGGAGATACTGTAGTAGATA 57.686 40.000 0.00 0.00 37.07 1.98
2400 2750 3.322254 AGAAGGTATGGAGGTTATGCTCG 59.678 47.826 0.00 0.00 0.00 5.03
2763 3118 5.885912 ACAGTACTTCAATCCTGTTTGTTGT 59.114 36.000 0.00 0.00 34.64 3.32
2777 3132 5.347342 TGTTTGTTGTTTATGTTCCTGCTG 58.653 37.500 0.00 0.00 0.00 4.41
3010 3366 3.628487 TGAACTCCAAACAAACTAACGGG 59.372 43.478 0.00 0.00 0.00 5.28
3342 3698 7.004086 ACTTAGGAAATGAACAGAAATGTCCA 58.996 34.615 0.00 0.00 33.19 4.02
3517 3873 0.394762 TGATGGCAGAACTGGATGGC 60.395 55.000 3.99 0.00 42.01 4.40
3547 3903 3.181470 GGGGAACAGATAGAGAAGCTGTC 60.181 52.174 0.00 0.00 41.65 3.51
3574 3930 7.907389 AGATGTCAAGGTACATACTTTCTGAA 58.093 34.615 0.00 0.00 40.17 3.02
3576 3932 9.817809 GATGTCAAGGTACATACTTTCTGAATA 57.182 33.333 0.00 0.00 40.17 1.75
3635 3991 5.528690 AGCTATGCATACGATTTTGATGTGT 59.471 36.000 1.16 0.00 0.00 3.72
3653 4009 3.000041 GTGTGATTCCTGTACGATGCAA 59.000 45.455 0.00 0.00 0.00 4.08
3686 4042 6.639686 CCACACAATTTCAAAGAATGACTCAG 59.360 38.462 0.00 0.00 37.92 3.35
3703 4059 1.628340 TCAGTCCATTGGTGTAGGTGG 59.372 52.381 1.86 0.00 0.00 4.61
3707 4063 2.556622 GTCCATTGGTGTAGGTGGTTTG 59.443 50.000 1.86 0.00 33.47 2.93
3715 4071 3.255642 GGTGTAGGTGGTTTGTCGTACTA 59.744 47.826 0.00 0.00 0.00 1.82
3720 4076 5.479124 AGGTGGTTTGTCGTACTAAGATT 57.521 39.130 0.00 0.00 0.00 2.40
3721 4077 5.235516 AGGTGGTTTGTCGTACTAAGATTG 58.764 41.667 0.00 0.00 0.00 2.67
3722 4078 4.992951 GGTGGTTTGTCGTACTAAGATTGT 59.007 41.667 0.00 0.00 0.00 2.71
3723 4079 6.015180 AGGTGGTTTGTCGTACTAAGATTGTA 60.015 38.462 0.00 0.00 0.00 2.41
3724 4080 6.089954 GGTGGTTTGTCGTACTAAGATTGTAC 59.910 42.308 0.00 0.00 37.50 2.90
3725 4081 6.865205 GTGGTTTGTCGTACTAAGATTGTACT 59.135 38.462 0.00 0.00 38.39 2.73
3726 4082 7.383300 GTGGTTTGTCGTACTAAGATTGTACTT 59.617 37.037 0.00 0.00 38.39 2.24
3727 4083 7.596248 TGGTTTGTCGTACTAAGATTGTACTTC 59.404 37.037 0.00 0.00 38.39 3.01
3728 4084 7.062722 GGTTTGTCGTACTAAGATTGTACTTCC 59.937 40.741 0.00 0.00 38.39 3.46
3729 4085 6.199937 TGTCGTACTAAGATTGTACTTCCC 57.800 41.667 0.00 0.00 38.39 3.97
3730 4086 5.126061 TGTCGTACTAAGATTGTACTTCCCC 59.874 44.000 0.00 0.00 38.39 4.81
3731 4087 4.646492 TCGTACTAAGATTGTACTTCCCCC 59.354 45.833 0.00 0.00 38.39 5.40
3732 4088 4.498682 CGTACTAAGATTGTACTTCCCCCG 60.499 50.000 0.00 0.00 38.39 5.73
3733 4089 3.447950 ACTAAGATTGTACTTCCCCCGT 58.552 45.455 0.00 0.00 0.00 5.28
3734 4090 3.842436 ACTAAGATTGTACTTCCCCCGTT 59.158 43.478 0.00 0.00 0.00 4.44
3735 4091 3.345508 AAGATTGTACTTCCCCCGTTC 57.654 47.619 0.00 0.00 0.00 3.95
3736 4092 1.558294 AGATTGTACTTCCCCCGTTCC 59.442 52.381 0.00 0.00 0.00 3.62
3737 4093 1.558294 GATTGTACTTCCCCCGTTCCT 59.442 52.381 0.00 0.00 0.00 3.36
3738 4094 2.323999 TTGTACTTCCCCCGTTCCTA 57.676 50.000 0.00 0.00 0.00 2.94
3739 4095 2.323999 TGTACTTCCCCCGTTCCTAA 57.676 50.000 0.00 0.00 0.00 2.69
3740 4096 2.618794 TGTACTTCCCCCGTTCCTAAA 58.381 47.619 0.00 0.00 0.00 1.85
3741 4097 3.183801 TGTACTTCCCCCGTTCCTAAAT 58.816 45.455 0.00 0.00 0.00 1.40
3742 4098 4.360889 TGTACTTCCCCCGTTCCTAAATA 58.639 43.478 0.00 0.00 0.00 1.40
3743 4099 4.970640 TGTACTTCCCCCGTTCCTAAATAT 59.029 41.667 0.00 0.00 0.00 1.28
3744 4100 6.142498 TGTACTTCCCCCGTTCCTAAATATA 58.858 40.000 0.00 0.00 0.00 0.86
3745 4101 6.614906 TGTACTTCCCCCGTTCCTAAATATAA 59.385 38.462 0.00 0.00 0.00 0.98
3746 4102 6.183810 ACTTCCCCCGTTCCTAAATATAAG 57.816 41.667 0.00 0.00 0.00 1.73
3747 4103 5.668991 ACTTCCCCCGTTCCTAAATATAAGT 59.331 40.000 0.00 0.00 0.00 2.24
3748 4104 5.813513 TCCCCCGTTCCTAAATATAAGTC 57.186 43.478 0.00 0.00 0.00 3.01
3749 4105 5.470501 TCCCCCGTTCCTAAATATAAGTCT 58.529 41.667 0.00 0.00 0.00 3.24
3750 4106 5.907079 TCCCCCGTTCCTAAATATAAGTCTT 59.093 40.000 0.00 0.00 0.00 3.01
3751 4107 6.387807 TCCCCCGTTCCTAAATATAAGTCTTT 59.612 38.462 0.00 0.00 0.00 2.52
3752 4108 7.058525 CCCCCGTTCCTAAATATAAGTCTTTT 58.941 38.462 0.00 0.00 0.00 2.27
3753 4109 7.558807 CCCCCGTTCCTAAATATAAGTCTTTTT 59.441 37.037 0.00 0.00 0.00 1.94
3754 4110 9.617523 CCCCGTTCCTAAATATAAGTCTTTTTA 57.382 33.333 0.00 0.00 0.00 1.52
3784 4140 9.967346 TTTTCTCTACATACTACATACAGATGC 57.033 33.333 0.00 0.00 36.43 3.91
3785 4141 8.691661 TTCTCTACATACTACATACAGATGCA 57.308 34.615 0.00 0.00 36.43 3.96
3786 4142 8.870075 TCTCTACATACTACATACAGATGCAT 57.130 34.615 0.00 0.00 36.43 3.96
3787 4143 9.959721 TCTCTACATACTACATACAGATGCATA 57.040 33.333 0.00 0.00 36.43 3.14
3826 4182 7.251321 AGTGTAGATTCACTCATTTTCCTCT 57.749 36.000 0.00 0.00 44.07 3.69
3827 4183 7.102346 AGTGTAGATTCACTCATTTTCCTCTG 58.898 38.462 0.00 0.00 44.07 3.35
3828 4184 6.876257 GTGTAGATTCACTCATTTTCCTCTGT 59.124 38.462 0.00 0.00 35.68 3.41
3829 4185 8.035394 GTGTAGATTCACTCATTTTCCTCTGTA 58.965 37.037 0.00 0.00 35.68 2.74
3830 4186 8.762645 TGTAGATTCACTCATTTTCCTCTGTAT 58.237 33.333 0.00 0.00 0.00 2.29
3831 4187 9.039870 GTAGATTCACTCATTTTCCTCTGTATG 57.960 37.037 0.00 0.00 0.00 2.39
3832 4188 7.628234 AGATTCACTCATTTTCCTCTGTATGT 58.372 34.615 0.00 0.00 0.00 2.29
3833 4189 8.762645 AGATTCACTCATTTTCCTCTGTATGTA 58.237 33.333 0.00 0.00 0.00 2.29
3834 4190 8.954950 ATTCACTCATTTTCCTCTGTATGTAG 57.045 34.615 0.00 0.00 0.00 2.74
3835 4191 7.482169 TCACTCATTTTCCTCTGTATGTAGT 57.518 36.000 0.00 0.00 0.00 2.73
3836 4192 7.548097 TCACTCATTTTCCTCTGTATGTAGTC 58.452 38.462 0.00 0.00 0.00 2.59
3837 4193 6.758886 CACTCATTTTCCTCTGTATGTAGTCC 59.241 42.308 0.00 0.00 0.00 3.85
3838 4194 6.440647 ACTCATTTTCCTCTGTATGTAGTCCA 59.559 38.462 0.00 0.00 0.00 4.02
3839 4195 7.126421 ACTCATTTTCCTCTGTATGTAGTCCAT 59.874 37.037 0.00 0.00 37.58 3.41
3840 4196 8.547481 TCATTTTCCTCTGTATGTAGTCCATA 57.453 34.615 0.00 0.00 34.86 2.74
3841 4197 8.642432 TCATTTTCCTCTGTATGTAGTCCATAG 58.358 37.037 0.00 0.00 36.71 2.23
3842 4198 7.973048 TTTTCCTCTGTATGTAGTCCATAGT 57.027 36.000 0.00 0.00 36.71 2.12
3843 4199 9.656323 ATTTTCCTCTGTATGTAGTCCATAGTA 57.344 33.333 0.00 0.00 36.71 1.82
3844 4200 8.693120 TTTCCTCTGTATGTAGTCCATAGTAG 57.307 38.462 0.00 0.00 36.71 2.57
3845 4201 7.628501 TCCTCTGTATGTAGTCCATAGTAGA 57.371 40.000 0.00 0.00 36.71 2.59
3846 4202 8.042286 TCCTCTGTATGTAGTCCATAGTAGAA 57.958 38.462 0.00 0.00 36.71 2.10
3847 4203 8.670490 TCCTCTGTATGTAGTCCATAGTAGAAT 58.330 37.037 0.00 0.00 36.71 2.40
3848 4204 8.952278 CCTCTGTATGTAGTCCATAGTAGAATC 58.048 40.741 0.00 0.00 36.71 2.52
3849 4205 9.733556 CTCTGTATGTAGTCCATAGTAGAATCT 57.266 37.037 0.00 0.00 36.71 2.40
3878 4234 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
3879 4235 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3880 4236 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3893 4249 5.642491 GGAACGGAGGGAGTATATAAATTGC 59.358 44.000 0.00 0.00 0.00 3.56
4010 4367 2.747446 CCACCTTTAACCGATCAACCAG 59.253 50.000 0.00 0.00 0.00 4.00
4064 4423 8.849490 CAACTTAAATGGATGTTGACGTTATTG 58.151 33.333 0.00 0.00 41.35 1.90
4088 4447 1.923148 CTTGGGTTATTGGGTCCCTCT 59.077 52.381 10.00 0.00 41.58 3.69
4091 4450 2.046729 TGGGTTATTGGGTCCCTCTACT 59.953 50.000 10.00 0.00 41.58 2.57
4107 4466 6.069615 TCCCTCTACTCCTCCAAAAATAAAGG 60.070 42.308 0.00 0.00 0.00 3.11
4142 4501 3.680777 TCCCACCCTTTTCTCAAACTT 57.319 42.857 0.00 0.00 0.00 2.66
4201 4560 8.567948 TGTTTTTAGAAGCAATAGGAAGACTTG 58.432 33.333 0.00 0.00 0.00 3.16
4238 4597 7.282675 CCGTTCCTAGATATAGGGTGTATAGTG 59.717 44.444 13.45 0.00 37.81 2.74
4276 4635 6.945636 AATCCGGAATATAGGGTGTATTGA 57.054 37.500 9.01 0.00 0.00 2.57
4303 4662 3.885976 TGTCAATTTTACCCCTCCACA 57.114 42.857 0.00 0.00 0.00 4.17
4317 4676 0.244721 TCCACAGATCAGCTCACACG 59.755 55.000 0.00 0.00 0.00 4.49
4331 4690 3.270027 CTCACACGCATGAAATCCCTAA 58.730 45.455 0.00 0.00 0.00 2.69
4366 4725 8.517062 AGATGATTTGTTTAGAAGATTCCCAG 57.483 34.615 0.00 0.00 0.00 4.45
4376 4735 5.393068 AGAAGATTCCCAGCCATGATTTA 57.607 39.130 0.00 0.00 0.00 1.40
4377 4736 5.961897 AGAAGATTCCCAGCCATGATTTAT 58.038 37.500 0.00 0.00 0.00 1.40
4378 4737 6.379579 AGAAGATTCCCAGCCATGATTTATT 58.620 36.000 0.00 0.00 0.00 1.40
4379 4738 6.842807 AGAAGATTCCCAGCCATGATTTATTT 59.157 34.615 0.00 0.00 0.00 1.40
4380 4739 8.006564 AGAAGATTCCCAGCCATGATTTATTTA 58.993 33.333 0.00 0.00 0.00 1.40
4381 4740 8.731591 AAGATTCCCAGCCATGATTTATTTAT 57.268 30.769 0.00 0.00 0.00 1.40
4382 4741 9.827198 AAGATTCCCAGCCATGATTTATTTATA 57.173 29.630 0.00 0.00 0.00 0.98
4385 4744 8.421249 TTCCCAGCCATGATTTATTTATAAGG 57.579 34.615 0.00 0.00 0.00 2.69
4386 4745 7.534852 TCCCAGCCATGATTTATTTATAAGGT 58.465 34.615 0.00 0.00 0.00 3.50
4387 4746 8.674173 TCCCAGCCATGATTTATTTATAAGGTA 58.326 33.333 0.00 0.00 0.00 3.08
4403 4762 9.845740 TTTATAAGGTATTGTACAGTGCATGAT 57.154 29.630 8.61 2.90 0.00 2.45
4404 4763 9.845740 TTATAAGGTATTGTACAGTGCATGATT 57.154 29.630 8.61 1.16 0.00 2.57
4406 4765 7.466746 AAGGTATTGTACAGTGCATGATTTT 57.533 32.000 8.61 0.00 0.00 1.82
4427 4786 2.012937 TTTCTAACCGCCGTACATGG 57.987 50.000 0.00 0.00 0.00 3.66
4429 4788 0.742505 TCTAACCGCCGTACATGGAG 59.257 55.000 0.00 0.00 0.00 3.86
4430 4789 0.874607 CTAACCGCCGTACATGGAGC 60.875 60.000 0.00 0.00 0.00 4.70
4431 4790 1.605971 TAACCGCCGTACATGGAGCA 61.606 55.000 0.00 0.00 0.00 4.26
4432 4791 2.108976 CCGCCGTACATGGAGCAT 59.891 61.111 0.00 0.00 0.00 3.79
4433 4792 2.246739 CCGCCGTACATGGAGCATG 61.247 63.158 0.00 0.00 46.18 4.06
4434 4793 2.885676 CGCCGTACATGGAGCATGC 61.886 63.158 10.51 10.51 44.80 4.06
4435 4794 1.819208 GCCGTACATGGAGCATGCA 60.819 57.895 21.98 0.00 44.80 3.96
4436 4795 1.375853 GCCGTACATGGAGCATGCAA 61.376 55.000 21.98 5.23 42.43 4.08
4437 4796 0.659427 CCGTACATGGAGCATGCAAG 59.341 55.000 21.98 6.88 42.43 4.01
4438 4797 0.028505 CGTACATGGAGCATGCAAGC 59.971 55.000 21.98 5.62 42.43 4.01
4440 4799 2.564771 GTACATGGAGCATGCAAGCTA 58.435 47.619 21.98 2.11 46.75 3.32
4441 4800 1.676746 ACATGGAGCATGCAAGCTAG 58.323 50.000 21.98 9.70 46.75 3.42
4442 4801 1.211212 ACATGGAGCATGCAAGCTAGA 59.789 47.619 21.98 6.62 46.75 2.43
4443 4802 1.602851 CATGGAGCATGCAAGCTAGAC 59.397 52.381 21.98 10.77 46.75 2.59
4444 4803 0.614812 TGGAGCATGCAAGCTAGACA 59.385 50.000 21.98 13.26 46.75 3.41
4445 4804 1.211212 TGGAGCATGCAAGCTAGACAT 59.789 47.619 21.98 0.00 46.75 3.06
4446 4805 1.602851 GGAGCATGCAAGCTAGACATG 59.397 52.381 21.98 15.60 46.75 3.21
4447 4806 1.602851 GAGCATGCAAGCTAGACATGG 59.397 52.381 21.98 6.96 46.75 3.66
4449 4808 1.676746 CATGCAAGCTAGACATGGCT 58.323 50.000 6.20 6.20 46.67 4.75
4451 4810 0.393402 TGCAAGCTAGACATGGCTGG 60.393 55.000 12.69 10.11 43.40 4.85
4452 4811 1.099879 GCAAGCTAGACATGGCTGGG 61.100 60.000 12.69 5.07 43.40 4.45
4453 4812 0.543277 CAAGCTAGACATGGCTGGGA 59.457 55.000 12.69 0.00 43.40 4.37
4454 4813 0.835941 AAGCTAGACATGGCTGGGAG 59.164 55.000 12.69 1.02 43.40 4.30
4456 4815 0.105778 GCTAGACATGGCTGGGAGTC 59.894 60.000 12.69 0.00 0.00 3.36
4457 4816 1.786937 CTAGACATGGCTGGGAGTCT 58.213 55.000 12.69 0.00 43.25 3.24
4458 4817 2.114616 CTAGACATGGCTGGGAGTCTT 58.885 52.381 12.69 0.00 41.27 3.01
4459 4818 1.366319 AGACATGGCTGGGAGTCTTT 58.634 50.000 0.00 0.00 38.08 2.52
4460 4819 1.280421 AGACATGGCTGGGAGTCTTTC 59.720 52.381 0.00 0.00 38.08 2.62
4465 4824 4.263905 ACATGGCTGGGAGTCTTTCAAATA 60.264 41.667 0.00 0.00 0.00 1.40
4466 4825 4.380843 TGGCTGGGAGTCTTTCAAATAA 57.619 40.909 0.00 0.00 0.00 1.40
4468 4827 5.332743 TGGCTGGGAGTCTTTCAAATAAAT 58.667 37.500 0.00 0.00 0.00 1.40
4469 4828 5.418840 TGGCTGGGAGTCTTTCAAATAAATC 59.581 40.000 0.00 0.00 0.00 2.17
4470 4829 5.418840 GGCTGGGAGTCTTTCAAATAAATCA 59.581 40.000 0.00 0.00 0.00 2.57
4471 4830 6.097412 GGCTGGGAGTCTTTCAAATAAATCAT 59.903 38.462 0.00 0.00 0.00 2.45
4472 4831 7.199078 GCTGGGAGTCTTTCAAATAAATCATC 58.801 38.462 0.00 0.00 0.00 2.92
4473 4832 7.067981 GCTGGGAGTCTTTCAAATAAATCATCT 59.932 37.037 0.00 0.00 0.00 2.90
4474 4833 8.511604 TGGGAGTCTTTCAAATAAATCATCTC 57.488 34.615 0.00 0.00 0.00 2.75
4475 4834 7.557719 TGGGAGTCTTTCAAATAAATCATCTCC 59.442 37.037 0.00 0.00 36.74 3.71
4476 4835 7.777440 GGGAGTCTTTCAAATAAATCATCTCCT 59.223 37.037 0.00 0.00 37.37 3.69
4529 4971 4.062293 GGGGTAAAATTGACAACAAAGGC 58.938 43.478 0.00 0.00 39.54 4.35
4538 4980 4.359434 TGACAACAAAGGCTATACACCA 57.641 40.909 0.00 0.00 0.00 4.17
4546 4988 9.507329 CAACAAAGGCTATACACCATATATTCT 57.493 33.333 0.00 0.00 0.00 2.40
4548 4990 8.103305 ACAAAGGCTATACACCATATATTCTGG 58.897 37.037 0.00 3.14 39.80 3.86
4590 5032 5.057843 ACACACCCTATATCTAGGAACGA 57.942 43.478 5.74 0.00 46.66 3.85
4597 5039 5.516945 CCCTATATCTAGGAACGAAGGGAGT 60.517 48.000 5.74 0.00 46.66 3.85
4598 5040 6.296894 CCCTATATCTAGGAACGAAGGGAGTA 60.297 46.154 5.74 0.00 46.66 2.59
4650 5092 1.314730 ATGGAAAGTTCGCCGTTGTT 58.685 45.000 0.00 0.00 0.00 2.83
4651 5093 1.096416 TGGAAAGTTCGCCGTTGTTT 58.904 45.000 0.00 0.00 0.00 2.83
4652 5094 2.286872 TGGAAAGTTCGCCGTTGTTTA 58.713 42.857 0.00 0.00 0.00 2.01
4653 5095 2.879646 TGGAAAGTTCGCCGTTGTTTAT 59.120 40.909 0.00 0.00 0.00 1.40
4654 5096 3.315749 TGGAAAGTTCGCCGTTGTTTATT 59.684 39.130 0.00 0.00 0.00 1.40
4655 5097 3.910170 GGAAAGTTCGCCGTTGTTTATTC 59.090 43.478 0.00 0.00 0.00 1.75
4656 5098 4.529446 GAAAGTTCGCCGTTGTTTATTCA 58.471 39.130 0.00 0.00 0.00 2.57
4657 5099 4.555348 AAGTTCGCCGTTGTTTATTCAA 57.445 36.364 0.00 0.00 0.00 2.69
4695 5137 5.726980 ACCAAGTATGTTACTGAACCGTA 57.273 39.130 0.00 0.00 39.39 4.02
4954 5396 2.563179 TGCTACTGGTCTGGAGTTTCTC 59.437 50.000 0.00 0.00 0.00 2.87
4960 5402 2.897326 TGGTCTGGAGTTTCTCGATCAA 59.103 45.455 0.00 0.00 0.00 2.57
5007 5449 7.461107 CATGATTTCAGCAATTTTGTCATTCC 58.539 34.615 0.00 0.00 0.00 3.01
5034 5476 4.780815 TGTCTGTCCTGAAAACAGTTGAT 58.219 39.130 3.45 0.00 43.68 2.57
5133 5575 3.245122 TGTCACCCTAATTGAAGGTTCCC 60.245 47.826 0.00 0.00 34.56 3.97
5243 5685 7.603784 ACACTGCAAATCTTCTTGTTTTTCTTT 59.396 29.630 0.00 0.00 0.00 2.52
5440 5885 6.990939 GGTAAGAGTACTGAAAAGAACTGGTT 59.009 38.462 0.00 0.00 0.00 3.67
5522 5967 1.152963 GAACACCCACAGCCACAGT 60.153 57.895 0.00 0.00 0.00 3.55
5584 6032 1.071699 AGATTGTGCACCTTACACGGT 59.928 47.619 15.69 0.00 41.03 4.83
5606 6054 3.821600 TGACTAGCTCTGACGACTTCTTT 59.178 43.478 0.00 0.00 0.00 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 148 7.609918 TCATCTTTTGCTAATTTGCTACCACTA 59.390 33.333 12.99 0.00 0.00 2.74
184 190 1.985159 TGCTACCACCATCCTCTGTTT 59.015 47.619 0.00 0.00 0.00 2.83
189 195 3.421844 AGTTTTTGCTACCACCATCCTC 58.578 45.455 0.00 0.00 0.00 3.71
220 227 1.816224 ACCGTGTTCTGTTTTTGCTGT 59.184 42.857 0.00 0.00 0.00 4.40
417 549 1.599606 CTGGCTCCTACTGCACGACT 61.600 60.000 0.00 0.00 0.00 4.18
493 628 3.240011 TTGGGCGGGGTTGTACGA 61.240 61.111 0.00 0.00 0.00 3.43
636 779 1.222936 CATCTCTTTCCCCGCTGCT 59.777 57.895 0.00 0.00 0.00 4.24
834 995 5.374071 AGTACTTCCTCCGTTCATTTTTGT 58.626 37.500 0.00 0.00 0.00 2.83
835 996 5.941948 AGTACTTCCTCCGTTCATTTTTG 57.058 39.130 0.00 0.00 0.00 2.44
836 997 6.954487 AAAGTACTTCCTCCGTTCATTTTT 57.046 33.333 8.95 0.00 0.00 1.94
837 998 6.954487 AAAAGTACTTCCTCCGTTCATTTT 57.046 33.333 8.95 0.00 0.00 1.82
838 999 6.771267 AGAAAAAGTACTTCCTCCGTTCATTT 59.229 34.615 8.95 1.53 0.00 2.32
839 1000 6.296803 AGAAAAAGTACTTCCTCCGTTCATT 58.703 36.000 8.95 0.00 0.00 2.57
840 1001 5.866207 AGAAAAAGTACTTCCTCCGTTCAT 58.134 37.500 8.95 0.00 0.00 2.57
841 1002 5.286267 AGAAAAAGTACTTCCTCCGTTCA 57.714 39.130 8.95 0.00 0.00 3.18
842 1003 6.482641 AGAAAGAAAAAGTACTTCCTCCGTTC 59.517 38.462 8.95 13.25 0.00 3.95
843 1004 6.354938 AGAAAGAAAAAGTACTTCCTCCGTT 58.645 36.000 8.95 5.99 0.00 4.44
844 1005 5.926663 AGAAAGAAAAAGTACTTCCTCCGT 58.073 37.500 8.95 0.00 0.00 4.69
845 1006 8.549338 AATAGAAAGAAAAAGTACTTCCTCCG 57.451 34.615 8.95 0.00 0.00 4.63
911 1073 0.472352 TGGTTCAACCCGGTAGTCCT 60.472 55.000 3.42 0.00 37.50 3.85
912 1074 0.397564 TTGGTTCAACCCGGTAGTCC 59.602 55.000 3.42 0.00 37.50 3.85
917 1079 0.753848 CCAACTTGGTTCAACCCGGT 60.754 55.000 3.42 0.00 37.50 5.28
947 1109 3.435026 CCCTTGGGTTCAGAAGTTCAGAA 60.435 47.826 6.61 6.61 0.00 3.02
1224 1405 4.897051 AGACACCCCAAGAATATAGGAGT 58.103 43.478 0.00 0.00 0.00 3.85
1225 1406 4.284746 GGAGACACCCCAAGAATATAGGAG 59.715 50.000 0.00 0.00 0.00 3.69
1226 1407 4.077982 AGGAGACACCCCAAGAATATAGGA 60.078 45.833 0.00 0.00 40.05 2.94
1227 1408 4.235372 AGGAGACACCCCAAGAATATAGG 58.765 47.826 0.00 0.00 40.05 2.57
1228 1409 5.131142 ACAAGGAGACACCCCAAGAATATAG 59.869 44.000 0.00 0.00 40.05 1.31
1229 1410 5.036916 ACAAGGAGACACCCCAAGAATATA 58.963 41.667 0.00 0.00 40.05 0.86
1449 1718 8.406730 AGACTTATATTTAGGAACGGAGGTAG 57.593 38.462 0.00 0.00 0.00 3.18
1450 1719 8.773033 AAGACTTATATTTAGGAACGGAGGTA 57.227 34.615 0.00 0.00 0.00 3.08
1451 1720 7.672122 AAGACTTATATTTAGGAACGGAGGT 57.328 36.000 0.00 0.00 0.00 3.85
1452 1721 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
1453 1722 9.250624 CAGAAAGACTTATATTTAGGAACGGAG 57.749 37.037 0.00 0.00 0.00 4.63
1454 1723 8.202137 CCAGAAAGACTTATATTTAGGAACGGA 58.798 37.037 0.00 0.00 0.00 4.69
1455 1724 7.441458 CCCAGAAAGACTTATATTTAGGAACGG 59.559 40.741 0.00 0.00 0.00 4.44
1456 1725 8.202137 TCCCAGAAAGACTTATATTTAGGAACG 58.798 37.037 0.00 0.00 0.00 3.95
1460 1729 9.508642 GGAATCCCAGAAAGACTTATATTTAGG 57.491 37.037 0.00 0.00 0.00 2.69
1486 1755 4.558898 GCTCCGTATGTAGTCCACCTAATG 60.559 50.000 0.00 0.00 0.00 1.90
1487 1756 3.573110 GCTCCGTATGTAGTCCACCTAAT 59.427 47.826 0.00 0.00 0.00 1.73
1488 1757 2.954318 GCTCCGTATGTAGTCCACCTAA 59.046 50.000 0.00 0.00 0.00 2.69
1489 1758 2.092267 TGCTCCGTATGTAGTCCACCTA 60.092 50.000 0.00 0.00 0.00 3.08
1490 1759 1.341679 TGCTCCGTATGTAGTCCACCT 60.342 52.381 0.00 0.00 0.00 4.00
1491 1760 1.108776 TGCTCCGTATGTAGTCCACC 58.891 55.000 0.00 0.00 0.00 4.61
1492 1761 2.953466 TTGCTCCGTATGTAGTCCAC 57.047 50.000 0.00 0.00 0.00 4.02
1493 1762 3.965379 TTTTGCTCCGTATGTAGTCCA 57.035 42.857 0.00 0.00 0.00 4.02
1494 1763 4.439057 TCATTTTGCTCCGTATGTAGTCC 58.561 43.478 0.00 0.00 0.00 3.85
1495 1764 6.257849 TCATTCATTTTGCTCCGTATGTAGTC 59.742 38.462 0.00 0.00 0.00 2.59
1496 1765 6.112734 TCATTCATTTTGCTCCGTATGTAGT 58.887 36.000 0.00 0.00 0.00 2.73
1497 1766 6.603237 TCATTCATTTTGCTCCGTATGTAG 57.397 37.500 0.00 0.00 0.00 2.74
1498 1767 6.993786 TTCATTCATTTTGCTCCGTATGTA 57.006 33.333 0.00 0.00 0.00 2.29
1499 1768 5.895636 TTCATTCATTTTGCTCCGTATGT 57.104 34.783 0.00 0.00 0.00 2.29
1500 1769 6.732154 AGATTCATTCATTTTGCTCCGTATG 58.268 36.000 0.00 0.00 0.00 2.39
1501 1770 6.949352 AGATTCATTCATTTTGCTCCGTAT 57.051 33.333 0.00 0.00 0.00 3.06
1502 1771 7.857734 TTAGATTCATTCATTTTGCTCCGTA 57.142 32.000 0.00 0.00 0.00 4.02
1503 1772 6.757897 TTAGATTCATTCATTTTGCTCCGT 57.242 33.333 0.00 0.00 0.00 4.69
1504 1773 7.253422 AGTTTAGATTCATTCATTTTGCTCCG 58.747 34.615 0.00 0.00 0.00 4.63
1505 1774 8.992835 AAGTTTAGATTCATTCATTTTGCTCC 57.007 30.769 0.00 0.00 0.00 4.70
1537 1806 5.664457 ACCACATACGGATGCATATAGATG 58.336 41.667 7.78 4.42 36.43 2.90
1538 1807 5.939764 ACCACATACGGATGCATATAGAT 57.060 39.130 7.78 0.00 36.43 1.98
1539 1808 5.245075 TGAACCACATACGGATGCATATAGA 59.755 40.000 7.78 0.00 36.43 1.98
1540 1809 5.478407 TGAACCACATACGGATGCATATAG 58.522 41.667 7.78 0.00 36.43 1.31
1541 1810 5.476091 TGAACCACATACGGATGCATATA 57.524 39.130 7.78 0.00 36.43 0.86
1542 1811 4.350368 TGAACCACATACGGATGCATAT 57.650 40.909 7.78 0.00 36.43 1.78
1543 1812 3.828875 TGAACCACATACGGATGCATA 57.171 42.857 7.78 0.00 36.43 3.14
1544 1813 2.708216 TGAACCACATACGGATGCAT 57.292 45.000 7.78 0.00 36.43 3.96
1545 1814 2.708216 ATGAACCACATACGGATGCA 57.292 45.000 7.78 0.00 37.46 3.96
1546 1815 3.494626 CACTATGAACCACATACGGATGC 59.505 47.826 7.78 0.00 40.07 3.91
1547 1816 4.058124 CCACTATGAACCACATACGGATG 58.942 47.826 5.94 5.94 40.07 3.51
1548 1817 3.964688 TCCACTATGAACCACATACGGAT 59.035 43.478 0.00 0.00 40.07 4.18
1549 1818 3.367321 TCCACTATGAACCACATACGGA 58.633 45.455 0.00 0.00 40.07 4.69
1550 1819 3.812156 TCCACTATGAACCACATACGG 57.188 47.619 0.00 0.00 40.07 4.02
1551 1820 5.601662 AGATTCCACTATGAACCACATACG 58.398 41.667 0.00 0.00 40.07 3.06
1552 1821 6.821388 AGAGATTCCACTATGAACCACATAC 58.179 40.000 0.00 0.00 40.07 2.39
1553 1822 7.563556 TGTAGAGATTCCACTATGAACCACATA 59.436 37.037 0.00 0.00 40.07 2.29
1554 1823 5.965033 AGAGATTCCACTATGAACCACAT 57.035 39.130 0.00 0.00 42.39 3.21
1555 1824 5.719563 TGTAGAGATTCCACTATGAACCACA 59.280 40.000 0.00 0.00 0.00 4.17
1556 1825 6.222038 TGTAGAGATTCCACTATGAACCAC 57.778 41.667 0.00 0.00 0.00 4.16
1557 1826 6.867519 TTGTAGAGATTCCACTATGAACCA 57.132 37.500 0.00 0.00 0.00 3.67
1558 1827 7.492994 GTCTTTGTAGAGATTCCACTATGAACC 59.507 40.741 0.00 0.00 0.00 3.62
1559 1828 8.254508 AGTCTTTGTAGAGATTCCACTATGAAC 58.745 37.037 0.00 0.00 0.00 3.18
1560 1829 8.367660 AGTCTTTGTAGAGATTCCACTATGAA 57.632 34.615 0.00 0.00 0.00 2.57
1561 1830 7.962995 AGTCTTTGTAGAGATTCCACTATGA 57.037 36.000 0.00 0.00 0.00 2.15
1562 1831 9.522804 GTAAGTCTTTGTAGAGATTCCACTATG 57.477 37.037 0.00 0.00 0.00 2.23
1563 1832 9.256228 TGTAAGTCTTTGTAGAGATTCCACTAT 57.744 33.333 0.00 0.00 0.00 2.12
1564 1833 8.645814 TGTAAGTCTTTGTAGAGATTCCACTA 57.354 34.615 0.00 0.00 0.00 2.74
1565 1834 7.540474 TGTAAGTCTTTGTAGAGATTCCACT 57.460 36.000 0.00 0.00 0.00 4.00
1566 1835 8.779354 AATGTAAGTCTTTGTAGAGATTCCAC 57.221 34.615 0.00 0.00 0.00 4.02
1574 1843 9.199982 CCGTTCTTAAATGTAAGTCTTTGTAGA 57.800 33.333 2.53 0.00 38.33 2.59
1575 1844 9.199982 TCCGTTCTTAAATGTAAGTCTTTGTAG 57.800 33.333 2.53 0.00 38.33 2.74
1576 1845 9.199982 CTCCGTTCTTAAATGTAAGTCTTTGTA 57.800 33.333 2.53 0.00 38.33 2.41
1577 1846 7.172703 CCTCCGTTCTTAAATGTAAGTCTTTGT 59.827 37.037 2.53 0.00 38.33 2.83
1578 1847 7.360946 CCCTCCGTTCTTAAATGTAAGTCTTTG 60.361 40.741 2.53 0.00 38.33 2.77
1579 1848 6.653740 CCCTCCGTTCTTAAATGTAAGTCTTT 59.346 38.462 2.53 0.00 38.33 2.52
1580 1849 6.013984 TCCCTCCGTTCTTAAATGTAAGTCTT 60.014 38.462 2.53 0.00 38.33 3.01
1581 1850 5.482878 TCCCTCCGTTCTTAAATGTAAGTCT 59.517 40.000 2.53 0.00 38.33 3.24
1582 1851 5.727434 TCCCTCCGTTCTTAAATGTAAGTC 58.273 41.667 2.53 0.00 38.33 3.01
1583 1852 5.247792 ACTCCCTCCGTTCTTAAATGTAAGT 59.752 40.000 2.53 0.00 38.33 2.24
1584 1853 5.731591 ACTCCCTCCGTTCTTAAATGTAAG 58.268 41.667 0.00 0.00 38.50 2.34
1585 1854 5.750352 ACTCCCTCCGTTCTTAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
1586 1855 6.189859 TCTACTCCCTCCGTTCTTAAATGTA 58.810 40.000 0.00 0.00 0.00 2.29
1587 1856 5.021458 TCTACTCCCTCCGTTCTTAAATGT 58.979 41.667 0.00 0.00 0.00 2.71
1588 1857 5.593679 TCTACTCCCTCCGTTCTTAAATG 57.406 43.478 0.00 0.00 0.00 2.32
1589 1858 5.395435 GCTTCTACTCCCTCCGTTCTTAAAT 60.395 44.000 0.00 0.00 0.00 1.40
1590 1859 4.081807 GCTTCTACTCCCTCCGTTCTTAAA 60.082 45.833 0.00 0.00 0.00 1.52
1591 1860 3.446516 GCTTCTACTCCCTCCGTTCTTAA 59.553 47.826 0.00 0.00 0.00 1.85
1592 1861 3.022406 GCTTCTACTCCCTCCGTTCTTA 58.978 50.000 0.00 0.00 0.00 2.10
1593 1862 1.826096 GCTTCTACTCCCTCCGTTCTT 59.174 52.381 0.00 0.00 0.00 2.52
1594 1863 1.476477 GCTTCTACTCCCTCCGTTCT 58.524 55.000 0.00 0.00 0.00 3.01
1595 1864 0.460722 GGCTTCTACTCCCTCCGTTC 59.539 60.000 0.00 0.00 0.00 3.95
1596 1865 0.252103 TGGCTTCTACTCCCTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
1597 1866 0.684805 CTGGCTTCTACTCCCTCCGT 60.685 60.000 0.00 0.00 0.00 4.69
1598 1867 0.395862 TCTGGCTTCTACTCCCTCCG 60.396 60.000 0.00 0.00 0.00 4.63
1599 1868 1.760029 CTTCTGGCTTCTACTCCCTCC 59.240 57.143 0.00 0.00 0.00 4.30
1600 1869 1.760029 CCTTCTGGCTTCTACTCCCTC 59.240 57.143 0.00 0.00 0.00 4.30
1601 1870 1.623834 CCCTTCTGGCTTCTACTCCCT 60.624 57.143 0.00 0.00 0.00 4.20
1602 1871 0.833949 CCCTTCTGGCTTCTACTCCC 59.166 60.000 0.00 0.00 0.00 4.30
1603 1872 1.760029 CTCCCTTCTGGCTTCTACTCC 59.240 57.143 0.00 0.00 0.00 3.85
1604 1873 2.741145 TCTCCCTTCTGGCTTCTACTC 58.259 52.381 0.00 0.00 0.00 2.59
1605 1874 2.930109 TCTCCCTTCTGGCTTCTACT 57.070 50.000 0.00 0.00 0.00 2.57
1606 1875 2.835156 ACTTCTCCCTTCTGGCTTCTAC 59.165 50.000 0.00 0.00 0.00 2.59
1607 1876 2.834549 CACTTCTCCCTTCTGGCTTCTA 59.165 50.000 0.00 0.00 0.00 2.10
1608 1877 1.627834 CACTTCTCCCTTCTGGCTTCT 59.372 52.381 0.00 0.00 0.00 2.85
1719 1989 5.065218 ACATACGGAGCAAAATGAGTGAATC 59.935 40.000 0.00 0.00 0.00 2.52
1792 2062 6.315642 TCTCACCACGAACTTATCTACTACAG 59.684 42.308 0.00 0.00 0.00 2.74
1794 2064 6.674694 TCTCACCACGAACTTATCTACTAC 57.325 41.667 0.00 0.00 0.00 2.73
1795 2065 6.883217 ACTTCTCACCACGAACTTATCTACTA 59.117 38.462 0.00 0.00 0.00 1.82
1797 2067 5.952033 ACTTCTCACCACGAACTTATCTAC 58.048 41.667 0.00 0.00 0.00 2.59
1798 2068 6.015688 ACAACTTCTCACCACGAACTTATCTA 60.016 38.462 0.00 0.00 0.00 1.98
1799 2069 5.221461 ACAACTTCTCACCACGAACTTATCT 60.221 40.000 0.00 0.00 0.00 1.98
1800 2070 4.989168 ACAACTTCTCACCACGAACTTATC 59.011 41.667 0.00 0.00 0.00 1.75
1801 2071 4.957296 ACAACTTCTCACCACGAACTTAT 58.043 39.130 0.00 0.00 0.00 1.73
1802 2072 4.098960 AGACAACTTCTCACCACGAACTTA 59.901 41.667 0.00 0.00 0.00 2.24
1803 2073 3.118738 AGACAACTTCTCACCACGAACTT 60.119 43.478 0.00 0.00 0.00 2.66
1997 2347 8.547481 TCAAAACCCCTTTTCTTTAATTCTCT 57.453 30.769 0.00 0.00 0.00 3.10
2400 2750 4.566987 AGTACACCAAGAATTCTCGAACC 58.433 43.478 8.78 0.00 0.00 3.62
2538 2892 1.494721 GATAGGTCTTGGGCCCAATGA 59.505 52.381 37.10 29.69 35.20 2.57
2539 2893 1.215173 TGATAGGTCTTGGGCCCAATG 59.785 52.381 37.10 28.06 35.20 2.82
2638 2993 1.134848 CAGGCTCAAGTCTAGACCAGC 60.135 57.143 22.41 22.41 0.00 4.85
2763 3118 6.952773 AAAACTACACAGCAGGAACATAAA 57.047 33.333 0.00 0.00 0.00 1.40
3010 3366 0.520404 CAGAACTGGCATGTGCTGAC 59.480 55.000 15.85 0.00 44.38 3.51
3261 3617 9.832445 TGACCCAAGAAGAAAACATATATAGAC 57.168 33.333 0.00 0.00 0.00 2.59
3342 3698 5.104817 CCAGGTGGATCCATTAAAAAGCATT 60.105 40.000 19.62 0.00 39.02 3.56
3517 3873 0.748450 TATCTGTTCCCCGGTAAGCG 59.252 55.000 0.00 0.00 0.00 4.68
3547 3903 6.473778 CAGAAAGTATGTACCTTGACATCTCG 59.526 42.308 0.00 0.00 40.54 4.04
3574 3930 9.391006 TGCTGGAAGTCGATAAAAAGTTAATAT 57.609 29.630 0.00 0.00 35.30 1.28
3576 3932 7.390718 ACTGCTGGAAGTCGATAAAAAGTTAAT 59.609 33.333 0.00 0.00 35.30 1.40
3581 3937 5.613358 AACTGCTGGAAGTCGATAAAAAG 57.387 39.130 0.00 0.00 35.30 2.27
3635 3991 3.876914 GGAATTGCATCGTACAGGAATCA 59.123 43.478 0.00 0.00 0.00 2.57
3653 4009 4.686191 TTGAAATTGTGTGGCTTGGAAT 57.314 36.364 0.00 0.00 0.00 3.01
3686 4042 2.556622 CAAACCACCTACACCAATGGAC 59.443 50.000 6.16 0.00 36.04 4.02
3703 4059 7.062722 GGGAAGTACAATCTTAGTACGACAAAC 59.937 40.741 0.00 0.00 44.92 2.93
3707 4063 5.451103 GGGGGAAGTACAATCTTAGTACGAC 60.451 48.000 0.00 0.00 44.92 4.34
3715 4071 2.026542 GGAACGGGGGAAGTACAATCTT 60.027 50.000 0.00 0.00 0.00 2.40
3720 4076 2.323999 TTAGGAACGGGGGAAGTACA 57.676 50.000 0.00 0.00 0.00 2.90
3721 4077 3.920231 ATTTAGGAACGGGGGAAGTAC 57.080 47.619 0.00 0.00 0.00 2.73
3722 4078 6.845975 ACTTATATTTAGGAACGGGGGAAGTA 59.154 38.462 0.00 0.00 0.00 2.24
3723 4079 5.668991 ACTTATATTTAGGAACGGGGGAAGT 59.331 40.000 0.00 0.00 0.00 3.01
3724 4080 6.042897 AGACTTATATTTAGGAACGGGGGAAG 59.957 42.308 0.00 0.00 0.00 3.46
3725 4081 5.907079 AGACTTATATTTAGGAACGGGGGAA 59.093 40.000 0.00 0.00 0.00 3.97
3726 4082 5.470501 AGACTTATATTTAGGAACGGGGGA 58.529 41.667 0.00 0.00 0.00 4.81
3727 4083 5.820404 AGACTTATATTTAGGAACGGGGG 57.180 43.478 0.00 0.00 0.00 5.40
3728 4084 8.515695 AAAAAGACTTATATTTAGGAACGGGG 57.484 34.615 0.00 0.00 0.00 5.73
3758 4114 9.967346 GCATCTGTATGTAGTATGTAGAGAAAA 57.033 33.333 0.00 0.00 35.38 2.29
3759 4115 9.131791 TGCATCTGTATGTAGTATGTAGAGAAA 57.868 33.333 0.00 0.00 35.38 2.52
3760 4116 8.691661 TGCATCTGTATGTAGTATGTAGAGAA 57.308 34.615 0.00 0.00 35.38 2.87
3761 4117 8.870075 ATGCATCTGTATGTAGTATGTAGAGA 57.130 34.615 0.00 0.00 35.38 3.10
3803 4159 6.876257 ACAGAGGAAAATGAGTGAATCTACAC 59.124 38.462 0.00 0.00 40.60 2.90
3804 4160 7.009179 ACAGAGGAAAATGAGTGAATCTACA 57.991 36.000 0.00 0.00 0.00 2.74
3805 4161 9.039870 CATACAGAGGAAAATGAGTGAATCTAC 57.960 37.037 0.00 0.00 0.00 2.59
3806 4162 8.762645 ACATACAGAGGAAAATGAGTGAATCTA 58.237 33.333 0.00 0.00 0.00 1.98
3807 4163 7.628234 ACATACAGAGGAAAATGAGTGAATCT 58.372 34.615 0.00 0.00 0.00 2.40
3808 4164 7.856145 ACATACAGAGGAAAATGAGTGAATC 57.144 36.000 0.00 0.00 0.00 2.52
3809 4165 8.543774 ACTACATACAGAGGAAAATGAGTGAAT 58.456 33.333 0.00 0.00 0.00 2.57
3810 4166 7.907389 ACTACATACAGAGGAAAATGAGTGAA 58.093 34.615 0.00 0.00 0.00 3.18
3811 4167 7.363880 GGACTACATACAGAGGAAAATGAGTGA 60.364 40.741 0.00 0.00 0.00 3.41
3812 4168 6.758886 GGACTACATACAGAGGAAAATGAGTG 59.241 42.308 0.00 0.00 0.00 3.51
3813 4169 6.440647 TGGACTACATACAGAGGAAAATGAGT 59.559 38.462 0.00 0.00 0.00 3.41
3814 4170 6.878317 TGGACTACATACAGAGGAAAATGAG 58.122 40.000 0.00 0.00 0.00 2.90
3815 4171 6.867519 TGGACTACATACAGAGGAAAATGA 57.132 37.500 0.00 0.00 0.00 2.57
3816 4172 8.424918 ACTATGGACTACATACAGAGGAAAATG 58.575 37.037 0.00 0.00 41.03 2.32
3817 4173 8.554490 ACTATGGACTACATACAGAGGAAAAT 57.446 34.615 0.00 0.00 41.03 1.82
3818 4174 7.973048 ACTATGGACTACATACAGAGGAAAA 57.027 36.000 0.00 0.00 41.03 2.29
3819 4175 8.500238 TCTACTATGGACTACATACAGAGGAAA 58.500 37.037 0.00 0.00 41.03 3.13
3820 4176 8.042286 TCTACTATGGACTACATACAGAGGAA 57.958 38.462 0.00 0.00 41.03 3.36
3821 4177 7.628501 TCTACTATGGACTACATACAGAGGA 57.371 40.000 0.00 0.00 41.03 3.71
3822 4178 8.871629 ATTCTACTATGGACTACATACAGAGG 57.128 38.462 0.00 0.00 41.03 3.69
3823 4179 9.733556 AGATTCTACTATGGACTACATACAGAG 57.266 37.037 0.00 0.00 41.03 3.35
3852 4208 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
3853 4209 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
3854 4210 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
3855 4211 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3856 4212 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
3857 4213 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3858 4214 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
3859 4215 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
3863 4219 9.827198 TTTATATACTCCCTCCGTTCCTAAATA 57.173 33.333 0.00 0.00 0.00 1.40
3864 4220 8.731591 TTTATATACTCCCTCCGTTCCTAAAT 57.268 34.615 0.00 0.00 0.00 1.40
3865 4221 8.731591 ATTTATATACTCCCTCCGTTCCTAAA 57.268 34.615 0.00 0.00 0.00 1.85
3866 4222 8.591072 CAATTTATATACTCCCTCCGTTCCTAA 58.409 37.037 0.00 0.00 0.00 2.69
3867 4223 7.310237 GCAATTTATATACTCCCTCCGTTCCTA 60.310 40.741 0.00 0.00 0.00 2.94
3868 4224 6.520231 GCAATTTATATACTCCCTCCGTTCCT 60.520 42.308 0.00 0.00 0.00 3.36
3869 4225 5.642491 GCAATTTATATACTCCCTCCGTTCC 59.358 44.000 0.00 0.00 0.00 3.62
3870 4226 5.642491 GGCAATTTATATACTCCCTCCGTTC 59.358 44.000 0.00 0.00 0.00 3.95
3871 4227 5.557866 GGCAATTTATATACTCCCTCCGTT 58.442 41.667 0.00 0.00 0.00 4.44
3872 4228 4.322499 CGGCAATTTATATACTCCCTCCGT 60.322 45.833 0.00 0.00 0.00 4.69
3873 4229 4.181578 CGGCAATTTATATACTCCCTCCG 58.818 47.826 0.00 0.00 0.00 4.63
3874 4230 5.161943 ACGGCAATTTATATACTCCCTCC 57.838 43.478 0.00 0.00 0.00 4.30
3875 4231 6.258068 GCATACGGCAATTTATATACTCCCTC 59.742 42.308 0.00 0.00 43.97 4.30
3876 4232 6.113411 GCATACGGCAATTTATATACTCCCT 58.887 40.000 0.00 0.00 43.97 4.20
3877 4233 6.359480 GCATACGGCAATTTATATACTCCC 57.641 41.667 0.00 0.00 43.97 4.30
3963 4319 8.798859 ACTGCAGTAGAAAAATGATGTAATCT 57.201 30.769 20.16 0.00 45.81 2.40
3964 4320 8.125448 GGACTGCAGTAGAAAAATGATGTAATC 58.875 37.037 21.73 0.00 45.83 1.75
3965 4321 7.611467 TGGACTGCAGTAGAAAAATGATGTAAT 59.389 33.333 21.73 0.00 0.00 1.89
3966 4322 6.939730 TGGACTGCAGTAGAAAAATGATGTAA 59.060 34.615 21.73 0.00 0.00 2.41
3979 4336 3.335579 GGTTAAAGGTGGACTGCAGTAG 58.664 50.000 21.73 0.00 0.00 2.57
4010 4367 6.239036 GGGAAATATTACAAGATCAGGCCAAC 60.239 42.308 5.01 0.00 0.00 3.77
4048 4407 5.382303 CAAGACACAATAACGTCAACATCC 58.618 41.667 0.00 0.00 34.48 3.51
4049 4408 5.382303 CCAAGACACAATAACGTCAACATC 58.618 41.667 0.00 0.00 34.48 3.06
4064 4423 2.443416 GGACCCAATAACCCAAGACAC 58.557 52.381 0.00 0.00 0.00 3.67
4088 4447 9.594936 TCATTTTCCTTTATTTTTGGAGGAGTA 57.405 29.630 0.00 0.00 39.33 2.59
4091 4450 8.491045 ACTCATTTTCCTTTATTTTTGGAGGA 57.509 30.769 0.00 0.00 36.55 3.71
4107 4466 3.694566 GGGTGGGATGTGTACTCATTTTC 59.305 47.826 11.49 0.79 0.00 2.29
4142 4501 4.890158 TGACAATTGAGGCTTCTACTGA 57.110 40.909 13.59 0.00 0.00 3.41
4159 4518 9.809096 TTCTAAAAACATGCTTAACAAATGACA 57.191 25.926 0.00 0.00 0.00 3.58
4186 4545 6.042208 AGGGAGTATACAAGTCTTCCTATTGC 59.958 42.308 5.50 0.00 35.62 3.56
4201 4560 4.363991 TCTAGGAACGGAGGGAGTATAC 57.636 50.000 0.00 0.00 0.00 1.47
4256 4615 5.740290 AGTCAATACACCCTATATTCCGG 57.260 43.478 0.00 0.00 0.00 5.14
4276 4635 5.069914 GGAGGGGTAAAATTGACAACAAAGT 59.930 40.000 0.00 0.00 39.54 2.66
4303 4662 0.533951 TCATGCGTGTGAGCTGATCT 59.466 50.000 5.68 0.00 38.13 2.75
4338 4697 9.183368 GGGAATCTTCTAAACAAATCATCTCTT 57.817 33.333 0.00 0.00 0.00 2.85
4339 4698 8.331740 TGGGAATCTTCTAAACAAATCATCTCT 58.668 33.333 0.00 0.00 0.00 3.10
4350 4709 4.526970 TCATGGCTGGGAATCTTCTAAAC 58.473 43.478 0.00 0.00 0.00 2.01
4360 4719 8.010105 ACCTTATAAATAAATCATGGCTGGGAA 58.990 33.333 0.00 0.00 0.00 3.97
4376 4735 9.845740 TCATGCACTGTACAATACCTTATAAAT 57.154 29.630 0.00 0.00 0.00 1.40
4377 4736 9.845740 ATCATGCACTGTACAATACCTTATAAA 57.154 29.630 0.00 0.00 0.00 1.40
4378 4737 9.845740 AATCATGCACTGTACAATACCTTATAA 57.154 29.630 0.00 0.00 0.00 0.98
4379 4738 9.845740 AAATCATGCACTGTACAATACCTTATA 57.154 29.630 0.00 0.00 0.00 0.98
4380 4739 8.752005 AAATCATGCACTGTACAATACCTTAT 57.248 30.769 0.00 0.00 0.00 1.73
4381 4740 8.574251 AAAATCATGCACTGTACAATACCTTA 57.426 30.769 0.00 0.00 0.00 2.69
4382 4741 7.466746 AAAATCATGCACTGTACAATACCTT 57.533 32.000 0.00 0.00 0.00 3.50
4406 4765 2.743126 CCATGTACGGCGGTTAGAAAAA 59.257 45.455 13.24 0.00 0.00 1.94
4409 4768 1.135527 CTCCATGTACGGCGGTTAGAA 59.864 52.381 13.24 0.00 0.00 2.10
4410 4769 0.742505 CTCCATGTACGGCGGTTAGA 59.257 55.000 13.24 0.00 0.00 2.10
4413 4772 2.125269 GCTCCATGTACGGCGGTT 60.125 61.111 13.24 0.00 0.00 4.44
4414 4773 2.731571 ATGCTCCATGTACGGCGGT 61.732 57.895 13.24 1.39 0.00 5.68
4415 4774 2.108976 ATGCTCCATGTACGGCGG 59.891 61.111 13.24 0.00 0.00 6.13
4416 4775 2.885676 GCATGCTCCATGTACGGCG 61.886 63.158 11.37 4.80 43.10 6.46
4417 4776 1.375853 TTGCATGCTCCATGTACGGC 61.376 55.000 20.33 0.00 43.10 5.68
4420 4779 1.386533 AGCTTGCATGCTCCATGTAC 58.613 50.000 20.57 0.00 43.10 2.90
4422 4781 1.211212 TCTAGCTTGCATGCTCCATGT 59.789 47.619 28.34 8.51 43.10 3.21
4423 4782 1.602851 GTCTAGCTTGCATGCTCCATG 59.397 52.381 28.34 17.11 42.97 3.66
4424 4783 1.211212 TGTCTAGCTTGCATGCTCCAT 59.789 47.619 28.34 9.58 42.97 3.41
4425 4784 0.614812 TGTCTAGCTTGCATGCTCCA 59.385 50.000 28.34 20.00 42.97 3.86
4426 4785 1.602851 CATGTCTAGCTTGCATGCTCC 59.397 52.381 28.34 17.95 42.97 4.70
4427 4786 1.602851 CCATGTCTAGCTTGCATGCTC 59.397 52.381 28.34 15.95 42.97 4.26
4429 4788 0.030369 GCCATGTCTAGCTTGCATGC 59.970 55.000 16.37 16.37 38.79 4.06
4430 4789 1.333931 CAGCCATGTCTAGCTTGCATG 59.666 52.381 18.31 18.31 37.18 4.06
4431 4790 1.676746 CAGCCATGTCTAGCTTGCAT 58.323 50.000 0.00 0.00 37.18 3.96
4432 4791 0.393402 CCAGCCATGTCTAGCTTGCA 60.393 55.000 0.00 0.00 37.18 4.08
4433 4792 1.099879 CCCAGCCATGTCTAGCTTGC 61.100 60.000 0.00 0.00 37.18 4.01
4434 4793 0.543277 TCCCAGCCATGTCTAGCTTG 59.457 55.000 0.00 0.00 37.18 4.01
4435 4794 0.835941 CTCCCAGCCATGTCTAGCTT 59.164 55.000 0.00 0.00 37.18 3.74
4436 4795 0.326048 ACTCCCAGCCATGTCTAGCT 60.326 55.000 0.00 0.00 40.89 3.32
4437 4796 0.105778 GACTCCCAGCCATGTCTAGC 59.894 60.000 0.00 0.00 0.00 3.42
4438 4797 1.786937 AGACTCCCAGCCATGTCTAG 58.213 55.000 0.00 0.00 37.92 2.43
4440 4799 1.280421 GAAAGACTCCCAGCCATGTCT 59.720 52.381 0.00 0.00 40.95 3.41
4441 4800 1.003580 TGAAAGACTCCCAGCCATGTC 59.996 52.381 0.00 0.00 0.00 3.06
4442 4801 1.067295 TGAAAGACTCCCAGCCATGT 58.933 50.000 0.00 0.00 0.00 3.21
4443 4802 2.205022 TTGAAAGACTCCCAGCCATG 57.795 50.000 0.00 0.00 0.00 3.66
4444 4803 2.978156 TTTGAAAGACTCCCAGCCAT 57.022 45.000 0.00 0.00 0.00 4.40
4445 4804 2.978156 ATTTGAAAGACTCCCAGCCA 57.022 45.000 0.00 0.00 0.00 4.75
4446 4805 5.418840 TGATTTATTTGAAAGACTCCCAGCC 59.581 40.000 0.00 0.00 0.00 4.85
4447 4806 6.515272 TGATTTATTTGAAAGACTCCCAGC 57.485 37.500 0.00 0.00 0.00 4.85
4449 4808 7.557719 GGAGATGATTTATTTGAAAGACTCCCA 59.442 37.037 0.00 0.00 34.74 4.37
4451 4810 8.744568 AGGAGATGATTTATTTGAAAGACTCC 57.255 34.615 0.00 0.00 39.16 3.85
4478 4837 0.597568 CAGCTCCCACGCATGAAAAA 59.402 50.000 0.00 0.00 0.00 1.94
4569 5011 5.047943 CCTTCGTTCCTAGATATAGGGTGTG 60.048 48.000 13.45 2.19 37.81 3.82
4598 5040 9.787435 TCACGGCTAAGGTGATTAAATAAATAT 57.213 29.630 0.00 0.00 39.36 1.28
4630 5072 1.314730 ACAACGGCGAACTTTCCATT 58.685 45.000 16.62 0.00 0.00 3.16
4695 5137 6.735556 AGGTCAGATGGATGGAAGTATTTTT 58.264 36.000 0.00 0.00 0.00 1.94
4954 5396 5.414454 TCCCCTGTGAAGTTTTTATTGATCG 59.586 40.000 0.00 0.00 0.00 3.69
4960 5402 4.837860 TGCATTCCCCTGTGAAGTTTTTAT 59.162 37.500 0.00 0.00 0.00 1.40
5007 5449 3.194861 TGTTTTCAGGACAGACAACGAG 58.805 45.455 0.00 0.00 32.33 4.18
5034 5476 2.338620 CGCCTCGGTGTTCACTCA 59.661 61.111 2.98 0.00 0.00 3.41
5243 5685 1.967779 TGAGCAGTGTACAACAGGCTA 59.032 47.619 0.00 0.00 39.23 3.93
5557 6002 0.543749 AGGTGCACAATCTAGGAGGC 59.456 55.000 20.43 0.00 0.00 4.70
5584 6032 3.060736 AGAAGTCGTCAGAGCTAGTCA 57.939 47.619 0.00 0.00 0.00 3.41
5632 6080 2.142357 CTGGTTCCTGACGACGAGCA 62.142 60.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.