Multiple sequence alignment - TraesCS4B01G244500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G244500 chr4B 100.000 6232 0 0 1 6232 506149621 506143390 0.000000e+00 11509.0
1 TraesCS4B01G244500 chr4B 88.095 84 10 0 5785 5868 34491233 34491316 3.980000e-17 100.0
2 TraesCS4B01G244500 chr4B 91.176 68 5 1 4123 4189 506145466 506145399 2.390000e-14 91.6
3 TraesCS4B01G244500 chr4B 91.176 68 5 1 4156 4223 506145499 506145433 2.390000e-14 91.6
4 TraesCS4B01G244500 chr4B 100.000 40 0 0 5513 5552 506144071 506144032 2.410000e-09 75.0
5 TraesCS4B01G244500 chr4B 100.000 40 0 0 5551 5590 506144109 506144070 2.410000e-09 75.0
6 TraesCS4B01G244500 chr4A 96.588 3107 65 19 1341 4447 64151251 64148186 0.000000e+00 5112.0
7 TraesCS4B01G244500 chr4A 97.250 800 22 0 4570 5369 64148188 64147389 0.000000e+00 1356.0
8 TraesCS4B01G244500 chr4A 95.581 430 11 6 895 1318 64152001 64151574 0.000000e+00 682.0
9 TraesCS4B01G244500 chr4A 92.400 250 9 4 5988 6231 64147080 64146835 1.290000e-91 348.0
10 TraesCS4B01G244500 chr4A 87.456 287 27 5 1 280 64173323 64173039 7.790000e-84 322.0
11 TraesCS4B01G244500 chr4A 92.893 197 11 1 5551 5744 64147305 64147109 3.680000e-72 283.0
12 TraesCS4B01G244500 chr4A 100.000 43 0 0 5510 5552 64147308 64147266 5.180000e-11 80.5
13 TraesCS4B01G244500 chr4A 88.235 68 5 2 4156 4223 64148504 64148440 1.860000e-10 78.7
14 TraesCS4B01G244500 chr4D 96.235 2842 72 13 1348 4189 409636361 409639167 0.000000e+00 4623.0
15 TraesCS4B01G244500 chr4D 96.552 986 26 4 4570 5552 409639310 409640290 0.000000e+00 1626.0
16 TraesCS4B01G244500 chr4D 85.167 836 88 23 1 816 409634729 409635548 0.000000e+00 824.0
17 TraesCS4B01G244500 chr4D 88.831 385 14 12 802 1160 409635582 409635963 4.430000e-121 446.0
18 TraesCS4B01G244500 chr4D 92.623 244 14 2 5988 6231 409640561 409640800 1.290000e-91 348.0
19 TraesCS4B01G244500 chr4D 98.421 190 3 0 5551 5740 409640251 409640440 1.000000e-87 335.0
20 TraesCS4B01G244500 chr4D 98.246 57 1 0 4391 4447 409639256 409639312 3.980000e-17 100.0
21 TraesCS4B01G244500 chrUn 94.161 137 8 0 4445 4581 322720536 322720400 6.330000e-50 209.0
22 TraesCS4B01G244500 chr1B 94.161 137 8 0 4440 4576 277456294 277456430 6.330000e-50 209.0
23 TraesCS4B01G244500 chr1B 95.385 130 6 0 4445 4574 623951084 623950955 2.280000e-49 207.0
24 TraesCS4B01G244500 chr3B 92.958 142 9 1 4439 4579 207301291 207301432 8.190000e-49 206.0
25 TraesCS4B01G244500 chr3B 89.103 156 15 2 4442 4596 691456385 691456539 6.380000e-45 193.0
26 TraesCS4B01G244500 chr3B 88.820 161 11 7 4412 4571 793003083 793003237 2.290000e-44 191.0
27 TraesCS4B01G244500 chr6B 92.308 143 9 2 4445 4587 68120703 68120843 1.060000e-47 202.0
28 TraesCS4B01G244500 chr5A 91.724 145 11 1 4435 4579 46616179 46616322 3.810000e-47 200.0
29 TraesCS4B01G244500 chr2B 91.096 146 11 2 4432 4576 547962625 547962481 4.930000e-46 196.0
30 TraesCS4B01G244500 chr2D 97.368 76 2 0 5796 5871 5386005 5385930 5.070000e-26 130.0
31 TraesCS4B01G244500 chr3A 88.571 105 12 0 5887 5991 734523222 734523118 1.820000e-25 128.0
32 TraesCS4B01G244500 chr3A 89.247 93 10 0 5887 5979 641321568 641321476 3.950000e-22 117.0
33 TraesCS4B01G244500 chr5D 90.426 94 9 0 5886 5979 538171639 538171546 2.360000e-24 124.0
34 TraesCS4B01G244500 chr5D 90.361 83 8 0 5792 5874 342594428 342594346 6.600000e-20 110.0
35 TraesCS4B01G244500 chr5D 84.466 103 12 4 5774 5874 92148840 92148740 1.430000e-16 99.0
36 TraesCS4B01G244500 chr3D 92.045 88 7 0 5887 5974 604609883 604609796 2.360000e-24 124.0
37 TraesCS4B01G244500 chr1D 89.583 96 10 0 5884 5979 7770685 7770780 8.480000e-24 122.0
38 TraesCS4B01G244500 chr1D 87.500 96 11 1 5884 5979 446708448 446708542 6.600000e-20 110.0
39 TraesCS4B01G244500 chr7D 86.792 106 14 0 5884 5989 603581129 603581024 1.100000e-22 119.0
40 TraesCS4B01G244500 chr5B 86.239 109 11 4 5768 5874 97493993 97493887 1.420000e-21 115.0
41 TraesCS4B01G244500 chr5B 90.361 83 8 0 5789 5871 712006969 712007051 6.600000e-20 110.0
42 TraesCS4B01G244500 chr5B 90.361 83 8 0 5789 5871 712024421 712024503 6.600000e-20 110.0
43 TraesCS4B01G244500 chr7B 88.298 94 11 0 5886 5979 218817080 218816987 5.110000e-21 113.0
44 TraesCS4B01G244500 chr1A 88.298 94 11 0 5886 5979 22251365 22251272 5.110000e-21 113.0
45 TraesCS4B01G244500 chr6D 90.361 83 8 0 5792 5874 464733879 464733797 6.600000e-20 110.0
46 TraesCS4B01G244500 chr2A 89.655 87 7 2 5786 5871 692710357 692710442 6.600000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G244500 chr4B 506143390 506149621 6231 True 11509.000000 11509 100.000000 1 6232 1 chr4B.!!$R1 6231
1 TraesCS4B01G244500 chr4A 64146835 64152001 5166 True 1134.314286 5112 94.706714 895 6231 7 chr4A.!!$R2 5336
2 TraesCS4B01G244500 chr4D 409634729 409640800 6071 False 1186.000000 4623 93.725000 1 6231 7 chr4D.!!$F1 6230

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.043334 ACATCTAGTCCAGGGGCTGT 59.957 55.0 1.91 0.0 0.00 4.40 F
73 74 0.467384 CATCTAGTCCAGGGGCTGTG 59.533 60.0 1.91 0.0 0.00 3.66 F
356 364 0.589708 GTAAGAACCGCACACCCAAC 59.410 55.0 0.00 0.0 0.00 3.77 F
2016 2424 0.461870 CGGCATCAACGGAGAATGGA 60.462 55.0 0.00 0.0 0.00 3.41 F
2750 3158 0.106569 CACCATGCCTAGGGATGCAA 60.107 55.0 32.10 1.3 41.64 4.08 F
3194 3602 0.692476 CCCACCATGACACCAAGAGA 59.308 55.0 0.00 0.0 0.00 3.10 F
3294 3702 1.213296 GGCTGGTAATCCCCTCTGAA 58.787 55.0 0.00 0.0 0.00 3.02 F
3803 4211 1.915141 CAGGGCCAGAAATCAGTGTT 58.085 50.0 6.18 0.0 0.00 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1160 1268 1.006102 CAGTTGCGGAACTCGTCCT 60.006 57.895 20.31 0.00 45.36 3.85 R
2016 2424 2.254546 TCCACAGCGTGTCAATTCTT 57.745 45.000 7.68 0.00 0.00 2.52 R
2179 2587 1.141881 CAACATCCTCCTCGTCCCG 59.858 63.158 0.00 0.00 0.00 5.14 R
3337 3745 0.879839 TGTGCAGTCACGTCATGGTG 60.880 55.000 0.00 0.00 46.01 4.17 R
4447 4855 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20 R
4448 4856 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30 R
4449 4857 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30 R
5555 5966 0.029834 GCCACAACTCACAACTGCAG 59.970 55.000 13.48 13.48 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 9.625747 AATCCTTCACAAAACACCAATATTTTT 57.374 25.926 0.00 0.00 0.00 1.94
55 56 9.567776 TTCTTCAGAAATGTACCATTAGAAACA 57.432 29.630 0.00 0.00 0.00 2.83
64 65 7.727578 TGTACCATTAGAAACATCTAGTCCA 57.272 36.000 0.00 0.00 0.00 4.02
68 69 5.455326 CCATTAGAAACATCTAGTCCAGGGG 60.455 48.000 0.00 0.00 0.00 4.79
69 70 1.840635 AGAAACATCTAGTCCAGGGGC 59.159 52.381 0.00 0.00 0.00 5.80
70 71 1.840635 GAAACATCTAGTCCAGGGGCT 59.159 52.381 0.00 0.00 0.00 5.19
71 72 1.207791 AACATCTAGTCCAGGGGCTG 58.792 55.000 1.91 0.00 0.00 4.85
72 73 0.043334 ACATCTAGTCCAGGGGCTGT 59.957 55.000 1.91 0.00 0.00 4.40
73 74 0.467384 CATCTAGTCCAGGGGCTGTG 59.533 60.000 1.91 0.00 0.00 3.66
75 76 1.992277 CTAGTCCAGGGGCTGTGCT 60.992 63.158 1.91 0.00 0.00 4.40
105 106 8.425577 AGCATATATTTTACCGTATCATCAGC 57.574 34.615 0.00 0.00 0.00 4.26
114 115 2.029470 CCGTATCATCAGCTTCCTCCTC 60.029 54.545 0.00 0.00 0.00 3.71
189 190 2.119495 ACGAAAGGACCTAGATGCCAT 58.881 47.619 0.00 0.00 0.00 4.40
203 204 2.423446 CCATCGAGTGGGCTAGCC 59.577 66.667 26.55 26.55 44.79 3.93
207 208 2.589610 ATCGAGTGGGCTAGCCTGGA 62.590 60.000 32.18 19.64 36.10 3.86
239 240 2.560284 GCACGATACATGCACATACG 57.440 50.000 0.00 0.00 42.88 3.06
241 242 1.128513 ACGATACATGCACATACGCG 58.871 50.000 3.53 3.53 33.35 6.01
242 243 1.128513 CGATACATGCACATACGCGT 58.871 50.000 19.17 19.17 33.35 6.01
255 263 4.042398 ACATACGCGTTATCATCACTCAC 58.958 43.478 20.78 0.00 0.00 3.51
283 291 2.170379 AGGTGGAATCCCCTATCCCTA 58.830 52.381 7.43 0.00 34.68 3.53
356 364 0.589708 GTAAGAACCGCACACCCAAC 59.410 55.000 0.00 0.00 0.00 3.77
370 378 1.761198 ACCCAACCGCTCTATTAGACC 59.239 52.381 0.00 0.00 0.00 3.85
395 403 3.497763 CCCATCTACTTCACACCCAAACA 60.498 47.826 0.00 0.00 0.00 2.83
405 413 5.313280 TCACACCCAAACATTAACCTAGT 57.687 39.130 0.00 0.00 0.00 2.57
413 421 6.119536 CCAAACATTAACCTAGTATGAGCCA 58.880 40.000 0.00 0.00 0.00 4.75
430 438 5.299148 TGAGCCAATTTTCTTCCATTTGTG 58.701 37.500 0.00 0.00 0.00 3.33
432 440 5.299949 AGCCAATTTTCTTCCATTTGTGAC 58.700 37.500 0.00 0.00 0.00 3.67
433 441 5.055812 GCCAATTTTCTTCCATTTGTGACA 58.944 37.500 0.00 0.00 0.00 3.58
434 442 5.526846 GCCAATTTTCTTCCATTTGTGACAA 59.473 36.000 0.00 0.00 0.00 3.18
435 443 6.293027 GCCAATTTTCTTCCATTTGTGACAAG 60.293 38.462 0.00 0.00 0.00 3.16
436 444 6.762661 CCAATTTTCTTCCATTTGTGACAAGT 59.237 34.615 0.00 0.00 0.00 3.16
437 445 7.280652 CCAATTTTCTTCCATTTGTGACAAGTT 59.719 33.333 0.00 0.00 0.00 2.66
438 446 8.667463 CAATTTTCTTCCATTTGTGACAAGTTT 58.333 29.630 0.00 0.00 0.00 2.66
439 447 8.791327 ATTTTCTTCCATTTGTGACAAGTTTT 57.209 26.923 0.00 0.00 0.00 2.43
440 448 8.614469 TTTTCTTCCATTTGTGACAAGTTTTT 57.386 26.923 0.00 0.00 0.00 1.94
496 504 1.222113 CCGGCCTCCTTCCTTTCTC 59.778 63.158 0.00 0.00 0.00 2.87
497 505 1.553690 CCGGCCTCCTTCCTTTCTCA 61.554 60.000 0.00 0.00 0.00 3.27
502 535 3.445450 GGCCTCCTTCCTTTCTCATTTTC 59.555 47.826 0.00 0.00 0.00 2.29
516 549 6.901081 TCTCATTTTCCTTTTTCCTCTTCC 57.099 37.500 0.00 0.00 0.00 3.46
528 561 4.921644 TTCCTCTTCCCCTAAAATTCGT 57.078 40.909 0.00 0.00 0.00 3.85
549 582 7.405469 TCGTGAACATTTTCAAATTTCATGG 57.595 32.000 17.77 11.78 43.52 3.66
828 911 3.063588 AGCCTACTTTTAATTTCGCGAGC 59.936 43.478 9.59 4.29 0.00 5.03
830 913 4.578601 CCTACTTTTAATTTCGCGAGCAG 58.421 43.478 9.59 1.49 0.00 4.24
831 914 2.851534 ACTTTTAATTTCGCGAGCAGC 58.148 42.857 9.59 0.00 43.95 5.25
842 925 1.080501 CGAGCAGCACGAGGAGAAA 60.081 57.895 6.34 0.00 0.00 2.52
860 943 3.055819 AGAAAGGAATGAGAGCGCTGTTA 60.056 43.478 18.48 8.56 0.00 2.41
865 948 0.598680 ATGAGAGCGCTGTTATCGGC 60.599 55.000 18.48 0.00 42.06 5.54
890 984 0.898320 CATATCCGGAGTAGGCCTGG 59.102 60.000 17.99 7.79 0.00 4.45
891 985 0.784495 ATATCCGGAGTAGGCCTGGA 59.216 55.000 17.99 13.98 35.91 3.86
892 986 0.784495 TATCCGGAGTAGGCCTGGAT 59.216 55.000 21.72 21.72 36.21 3.41
915 1016 3.244284 ACACAAAATCTACTACACGGCCA 60.244 43.478 2.24 0.00 0.00 5.36
917 1018 2.676342 CAAAATCTACTACACGGCCACC 59.324 50.000 2.24 0.00 0.00 4.61
936 1037 4.148825 CAAGGCCCGCTACGCTCT 62.149 66.667 0.00 0.00 0.00 4.09
981 1083 3.550431 CGGCGAGACATCCCCCAT 61.550 66.667 0.00 0.00 0.00 4.00
1473 1881 2.347490 GCGCTCCACCTCTCCAAA 59.653 61.111 0.00 0.00 0.00 3.28
1487 1895 2.613506 CCAAACCCAAGACCGTCGC 61.614 63.158 0.00 0.00 0.00 5.19
1605 2013 0.979665 TGCTCTCCTTCAACTCCCAG 59.020 55.000 0.00 0.00 0.00 4.45
1637 2045 4.749310 CGAGCCGCTGCAGGAGTT 62.749 66.667 17.12 0.00 41.13 3.01
1896 2304 0.916086 TTGGGCTGTATGGGTCGATT 59.084 50.000 0.00 0.00 0.00 3.34
2016 2424 0.461870 CGGCATCAACGGAGAATGGA 60.462 55.000 0.00 0.00 0.00 3.41
2179 2587 1.375523 CAGTGCCGGTGGAACTACC 60.376 63.158 1.90 0.00 40.16 3.18
2547 2955 0.108585 GGTGGGCTGACAAGTTCTCA 59.891 55.000 0.00 0.00 0.00 3.27
2577 2985 3.650942 ACTACAAGGGATCAACTCCAACA 59.349 43.478 0.00 0.00 46.98 3.33
2723 3131 9.914923 CATTTTATGCATGAATCAATCTTGTTG 57.085 29.630 10.16 0.00 36.00 3.33
2750 3158 0.106569 CACCATGCCTAGGGATGCAA 60.107 55.000 32.10 1.30 41.64 4.08
2757 3165 5.443283 CATGCCTAGGGATGCAATACATAT 58.557 41.667 27.89 0.00 41.50 1.78
2902 3310 1.873698 TTGCTGGAAGTCAACGGTAC 58.126 50.000 0.00 0.00 35.30 3.34
3013 3421 1.433592 ACCTTCTCTGGTAGGTGGACT 59.566 52.381 0.00 0.00 40.87 3.85
3061 3469 9.528489 AATCCTGATGTTAAAAGCCTTACTAAA 57.472 29.630 0.00 0.00 0.00 1.85
3069 3477 9.959749 TGTTAAAAGCCTTACTAAAATGTGAAG 57.040 29.630 0.00 0.00 0.00 3.02
3113 3521 3.511146 GTGGATTCTTTGGCAATCCTGAA 59.489 43.478 16.30 11.69 46.74 3.02
3176 3584 4.222124 TCCTTTCTTTAGAGGTCATGCC 57.778 45.455 0.00 0.00 34.57 4.40
3194 3602 0.692476 CCCACCATGACACCAAGAGA 59.308 55.000 0.00 0.00 0.00 3.10
3236 3644 9.965902 TTTGGGTAATGCCACAAATAATTATTT 57.034 25.926 16.15 16.15 39.65 1.40
3237 3645 9.965902 TTGGGTAATGCCACAAATAATTATTTT 57.034 25.926 18.72 9.39 39.65 1.82
3294 3702 1.213296 GGCTGGTAATCCCCTCTGAA 58.787 55.000 0.00 0.00 0.00 3.02
3298 3706 3.696548 GCTGGTAATCCCCTCTGAAAAAG 59.303 47.826 0.00 0.00 0.00 2.27
3329 3737 3.320541 AGAACTGGCTGATAATCGAGGAG 59.679 47.826 0.00 0.00 0.00 3.69
3337 3745 7.099764 TGGCTGATAATCGAGGAGAATTTATC 58.900 38.462 5.96 5.96 34.09 1.75
3352 3760 5.582269 AGAATTTATCACCATGACGTGACTG 59.418 40.000 6.91 0.00 45.19 3.51
3437 3845 7.642669 TGATGATGATCGAGGAAAATTTAAGC 58.357 34.615 0.00 0.00 0.00 3.09
3438 3846 7.500227 TGATGATGATCGAGGAAAATTTAAGCT 59.500 33.333 0.00 0.00 0.00 3.74
3439 3847 7.019774 TGATGATCGAGGAAAATTTAAGCTG 57.980 36.000 0.00 0.00 0.00 4.24
3440 3848 6.599244 TGATGATCGAGGAAAATTTAAGCTGT 59.401 34.615 0.00 0.00 0.00 4.40
3441 3849 6.817765 TGATCGAGGAAAATTTAAGCTGTT 57.182 33.333 0.00 0.00 0.00 3.16
3442 3850 7.915293 TGATCGAGGAAAATTTAAGCTGTTA 57.085 32.000 0.00 0.00 0.00 2.41
3443 3851 8.330466 TGATCGAGGAAAATTTAAGCTGTTAA 57.670 30.769 0.00 0.00 0.00 2.01
3548 3956 5.593679 TGTTGCCCTACTATTACACTCTC 57.406 43.478 0.00 0.00 0.00 3.20
3599 4007 3.741249 TGTTATGCGTCCTTTGTGGTTA 58.259 40.909 0.00 0.00 37.07 2.85
3744 4152 9.638239 TTAATCACTCATATTTTGCTGGAAAAC 57.362 29.630 9.28 0.00 36.35 2.43
3752 4160 3.717400 TTTGCTGGAAAACGCAACATA 57.283 38.095 0.00 0.00 44.88 2.29
3753 4161 3.932545 TTGCTGGAAAACGCAACATAT 57.067 38.095 0.00 0.00 40.84 1.78
3754 4162 3.214697 TGCTGGAAAACGCAACATATG 57.785 42.857 0.00 0.00 32.40 1.78
3755 4163 2.094803 TGCTGGAAAACGCAACATATGG 60.095 45.455 7.80 0.00 32.40 2.74
3756 4164 2.163412 GCTGGAAAACGCAACATATGGA 59.837 45.455 7.80 0.00 0.00 3.41
3757 4165 3.366883 GCTGGAAAACGCAACATATGGAA 60.367 43.478 7.80 0.00 0.00 3.53
3758 4166 4.677779 GCTGGAAAACGCAACATATGGAAT 60.678 41.667 7.80 0.00 0.00 3.01
3759 4167 5.449862 GCTGGAAAACGCAACATATGGAATA 60.450 40.000 7.80 0.00 0.00 1.75
3760 4168 5.885881 TGGAAAACGCAACATATGGAATAC 58.114 37.500 7.80 0.00 0.00 1.89
3761 4169 5.416013 TGGAAAACGCAACATATGGAATACA 59.584 36.000 7.80 0.00 0.00 2.29
3762 4170 6.096141 TGGAAAACGCAACATATGGAATACAT 59.904 34.615 7.80 0.00 43.68 2.29
3763 4171 6.417635 GGAAAACGCAACATATGGAATACATG 59.582 38.462 7.80 0.00 40.82 3.21
3803 4211 1.915141 CAGGGCCAGAAATCAGTGTT 58.085 50.000 6.18 0.00 0.00 3.32
3870 4278 4.443598 GGATCTCCATACAAGGGAAGTGTC 60.444 50.000 0.00 0.00 33.11 3.67
4171 4579 9.233649 TGTGAACCTTTTTCTTTACTAAAGACA 57.766 29.630 10.29 2.50 46.53 3.41
4217 4625 4.771590 ACTAAAGACATGTTGCATGTGG 57.228 40.909 17.98 6.78 31.52 4.17
4260 4668 5.769484 TCCAGATTAGTCGATGTAGTTCC 57.231 43.478 0.00 0.00 0.00 3.62
4286 4694 7.043788 CGAGGATCAACTATACATCATATTGCG 60.044 40.741 0.00 0.00 33.17 4.85
4454 4862 1.525941 GCTACTAGCTACTCCCTCCG 58.474 60.000 0.35 0.00 38.45 4.63
4455 4863 1.202794 GCTACTAGCTACTCCCTCCGT 60.203 57.143 0.35 0.00 38.45 4.69
4456 4864 2.769893 CTACTAGCTACTCCCTCCGTC 58.230 57.143 0.00 0.00 0.00 4.79
4457 4865 0.183252 ACTAGCTACTCCCTCCGTCC 59.817 60.000 0.00 0.00 0.00 4.79
4458 4866 0.885596 CTAGCTACTCCCTCCGTCCG 60.886 65.000 0.00 0.00 0.00 4.79
4459 4867 2.335092 TAGCTACTCCCTCCGTCCGG 62.335 65.000 0.00 0.00 0.00 5.14
4460 4868 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
4461 4869 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
4462 4870 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
4463 4871 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
4464 4872 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
4465 4873 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
4466 4874 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
4467 4875 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
4468 4876 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
4469 4877 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
4470 4878 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
4471 4879 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
4472 4880 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
4473 4881 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
4474 4882 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
4475 4883 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
4476 4884 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
4477 4885 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
4478 4886 6.084277 GTCCGGAAATACTTGTCATCAAAAC 58.916 40.000 5.23 0.00 32.87 2.43
4479 4887 5.086058 CCGGAAATACTTGTCATCAAAACG 58.914 41.667 0.00 0.00 32.87 3.60
4480 4888 5.106869 CCGGAAATACTTGTCATCAAAACGA 60.107 40.000 0.00 0.00 32.87 3.85
4481 4889 6.367421 CGGAAATACTTGTCATCAAAACGAA 58.633 36.000 0.00 0.00 32.87 3.85
4482 4890 7.021196 CGGAAATACTTGTCATCAAAACGAAT 58.979 34.615 0.00 0.00 32.87 3.34
4483 4891 8.172484 CGGAAATACTTGTCATCAAAACGAATA 58.828 33.333 0.00 0.00 32.87 1.75
4484 4892 9.834628 GGAAATACTTGTCATCAAAACGAATAA 57.165 29.630 0.00 0.00 32.87 1.40
4488 4896 9.840427 ATACTTGTCATCAAAACGAATAAAAGG 57.160 29.630 0.00 0.00 32.87 3.11
4489 4897 7.145323 ACTTGTCATCAAAACGAATAAAAGGG 58.855 34.615 0.00 0.00 32.87 3.95
4490 4898 6.019779 TGTCATCAAAACGAATAAAAGGGG 57.980 37.500 0.00 0.00 0.00 4.79
4491 4899 5.770663 TGTCATCAAAACGAATAAAAGGGGA 59.229 36.000 0.00 0.00 0.00 4.81
4492 4900 6.435904 TGTCATCAAAACGAATAAAAGGGGAT 59.564 34.615 0.00 0.00 0.00 3.85
4493 4901 6.751888 GTCATCAAAACGAATAAAAGGGGATG 59.248 38.462 0.00 0.00 0.00 3.51
4494 4902 6.435904 TCATCAAAACGAATAAAAGGGGATGT 59.564 34.615 0.00 0.00 32.47 3.06
4495 4903 7.612244 TCATCAAAACGAATAAAAGGGGATGTA 59.388 33.333 0.00 0.00 32.47 2.29
4496 4904 7.948034 TCAAAACGAATAAAAGGGGATGTAT 57.052 32.000 0.00 0.00 0.00 2.29
4497 4905 7.992008 TCAAAACGAATAAAAGGGGATGTATC 58.008 34.615 0.00 0.00 0.00 2.24
4498 4906 7.832187 TCAAAACGAATAAAAGGGGATGTATCT 59.168 33.333 0.00 0.00 0.00 1.98
4499 4907 7.568199 AAACGAATAAAAGGGGATGTATCTG 57.432 36.000 0.00 0.00 0.00 2.90
4500 4908 5.621193 ACGAATAAAAGGGGATGTATCTGG 58.379 41.667 0.00 0.00 0.00 3.86
4501 4909 5.368523 ACGAATAAAAGGGGATGTATCTGGA 59.631 40.000 0.00 0.00 0.00 3.86
4502 4910 6.044404 ACGAATAAAAGGGGATGTATCTGGAT 59.956 38.462 0.00 0.00 0.00 3.41
4503 4911 6.372659 CGAATAAAAGGGGATGTATCTGGATG 59.627 42.308 0.00 0.00 0.00 3.51
4504 4912 6.786843 ATAAAAGGGGATGTATCTGGATGT 57.213 37.500 0.00 0.00 0.00 3.06
4505 4913 7.888514 ATAAAAGGGGATGTATCTGGATGTA 57.111 36.000 0.00 0.00 0.00 2.29
4506 4914 6.786843 AAAAGGGGATGTATCTGGATGTAT 57.213 37.500 0.00 0.00 0.00 2.29
4507 4915 7.888514 AAAAGGGGATGTATCTGGATGTATA 57.111 36.000 0.00 0.00 0.00 1.47
4508 4916 8.468547 AAAAGGGGATGTATCTGGATGTATAT 57.531 34.615 0.00 0.00 0.00 0.86
4509 4917 8.468547 AAAGGGGATGTATCTGGATGTATATT 57.531 34.615 0.00 0.00 0.00 1.28
4510 4918 9.574577 AAAGGGGATGTATCTGGATGTATATTA 57.425 33.333 0.00 0.00 0.00 0.98
4511 4919 8.789767 AGGGGATGTATCTGGATGTATATTAG 57.210 38.462 0.00 0.00 0.00 1.73
4512 4920 8.355256 AGGGGATGTATCTGGATGTATATTAGT 58.645 37.037 0.00 0.00 0.00 2.24
4513 4921 8.993424 GGGGATGTATCTGGATGTATATTAGTT 58.007 37.037 0.00 0.00 0.00 2.24
4535 4943 8.208575 AGTTCTAGATACATCCCCTTTTATCC 57.791 38.462 0.00 0.00 0.00 2.59
4536 4944 7.794683 AGTTCTAGATACATCCCCTTTTATCCA 59.205 37.037 0.00 0.00 0.00 3.41
4537 4945 8.437575 GTTCTAGATACATCCCCTTTTATCCAA 58.562 37.037 0.00 0.00 0.00 3.53
4538 4946 8.757307 TCTAGATACATCCCCTTTTATCCAAT 57.243 34.615 0.00 0.00 0.00 3.16
4539 4947 9.182642 TCTAGATACATCCCCTTTTATCCAATT 57.817 33.333 0.00 0.00 0.00 2.32
4540 4948 9.813826 CTAGATACATCCCCTTTTATCCAATTT 57.186 33.333 0.00 0.00 0.00 1.82
4541 4949 8.482852 AGATACATCCCCTTTTATCCAATTTG 57.517 34.615 0.00 0.00 0.00 2.32
4542 4950 8.288812 AGATACATCCCCTTTTATCCAATTTGA 58.711 33.333 0.00 0.00 0.00 2.69
4543 4951 9.093458 GATACATCCCCTTTTATCCAATTTGAT 57.907 33.333 0.00 0.00 0.00 2.57
4544 4952 7.128234 ACATCCCCTTTTATCCAATTTGATG 57.872 36.000 2.33 0.00 33.80 3.07
4545 4953 6.902416 ACATCCCCTTTTATCCAATTTGATGA 59.098 34.615 2.33 0.00 32.39 2.92
4546 4954 6.790232 TCCCCTTTTATCCAATTTGATGAC 57.210 37.500 2.33 0.00 0.00 3.06
4547 4955 6.259893 TCCCCTTTTATCCAATTTGATGACA 58.740 36.000 2.33 0.00 0.00 3.58
4548 4956 6.728164 TCCCCTTTTATCCAATTTGATGACAA 59.272 34.615 2.33 0.00 0.00 3.18
4549 4957 7.043565 CCCCTTTTATCCAATTTGATGACAAG 58.956 38.462 2.33 2.46 37.32 3.16
4550 4958 7.310609 CCCCTTTTATCCAATTTGATGACAAGT 60.311 37.037 2.33 0.00 37.32 3.16
4551 4959 8.748412 CCCTTTTATCCAATTTGATGACAAGTA 58.252 33.333 2.33 0.00 37.32 2.24
4557 4965 8.915871 ATCCAATTTGATGACAAGTATTTTCG 57.084 30.769 0.00 0.00 37.32 3.46
4558 4966 7.312154 TCCAATTTGATGACAAGTATTTTCGG 58.688 34.615 0.00 0.00 37.32 4.30
4559 4967 7.175816 TCCAATTTGATGACAAGTATTTTCGGA 59.824 33.333 0.00 0.00 37.32 4.55
4560 4968 7.273381 CCAATTTGATGACAAGTATTTTCGGAC 59.727 37.037 0.00 0.00 37.32 4.79
4561 4969 6.869315 TTTGATGACAAGTATTTTCGGACA 57.131 33.333 0.00 0.00 37.32 4.02
4562 4970 6.480524 TTGATGACAAGTATTTTCGGACAG 57.519 37.500 0.00 0.00 0.00 3.51
4563 4971 5.789521 TGATGACAAGTATTTTCGGACAGA 58.210 37.500 0.00 0.00 0.00 3.41
4564 4972 5.869344 TGATGACAAGTATTTTCGGACAGAG 59.131 40.000 0.00 0.00 0.00 3.35
4565 4973 4.566004 TGACAAGTATTTTCGGACAGAGG 58.434 43.478 0.00 0.00 0.00 3.69
4566 4974 3.933332 GACAAGTATTTTCGGACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
4567 4975 3.581332 ACAAGTATTTTCGGACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
4568 4976 4.184629 CAAGTATTTTCGGACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
4569 4977 3.442076 AGTATTTTCGGACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
4570 4978 4.607239 AGTATTTTCGGACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
4571 4979 3.889520 ATTTTCGGACAGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
4575 4983 3.878237 TCGGACAGAGGGAGTACATAT 57.122 47.619 0.00 0.00 0.00 1.78
4624 5032 8.494016 AGACTATTTAACTCTGTATGTTTGCC 57.506 34.615 0.00 0.00 0.00 4.52
4630 5038 8.800370 TTTAACTCTGTATGTTTGCCATGATA 57.200 30.769 0.00 0.00 34.86 2.15
4743 5151 1.577134 CATCGGCGTTTTGTATTTGCG 59.423 47.619 6.85 0.00 0.00 4.85
4788 5196 1.971505 TTGCGCCTGATAGTCTGGGG 61.972 60.000 4.18 13.25 46.40 4.96
4940 5348 3.054361 AGGAGTGGTTCAAAGTCTGTTGT 60.054 43.478 0.00 0.00 0.00 3.32
5064 5472 2.758423 TCGCTGTCAGGCTATAAACTCA 59.242 45.455 1.14 0.00 0.00 3.41
5122 5530 4.764823 TGTTATCTGTGGACACCCAAATTC 59.235 41.667 0.00 0.00 45.59 2.17
5147 5555 4.487714 TGTTTCAGACTTTCAGTGGACT 57.512 40.909 0.00 0.00 0.00 3.85
5345 5753 6.873605 TGTGTGTGTAATCTTGGATAGTTCTG 59.126 38.462 0.00 0.00 0.00 3.02
5426 5834 1.407437 GCCCACACACTATCCTCCAAG 60.407 57.143 0.00 0.00 0.00 3.61
5449 5857 7.768807 AGCACAAAGGTAACAAATAATACCA 57.231 32.000 4.91 0.00 43.32 3.25
5451 5859 8.811994 AGCACAAAGGTAACAAATAATACCATT 58.188 29.630 4.91 0.00 43.32 3.16
5468 5876 3.254166 ACCATTTCAGACAGAATGCACAC 59.746 43.478 0.00 0.00 42.53 3.82
5535 5946 1.382522 ACTGCAGTTGTGAGTTGTGG 58.617 50.000 15.25 0.00 0.00 4.17
5536 5947 0.029834 CTGCAGTTGTGAGTTGTGGC 59.970 55.000 5.25 0.00 0.00 5.01
5537 5948 0.679321 TGCAGTTGTGAGTTGTGGCA 60.679 50.000 0.00 0.00 0.00 4.92
5538 5949 0.029834 GCAGTTGTGAGTTGTGGCAG 59.970 55.000 0.00 0.00 0.00 4.85
5539 5950 0.664761 CAGTTGTGAGTTGTGGCAGG 59.335 55.000 0.00 0.00 0.00 4.85
5540 5951 1.103398 AGTTGTGAGTTGTGGCAGGC 61.103 55.000 0.00 0.00 0.00 4.85
5541 5952 1.077140 TTGTGAGTTGTGGCAGGCA 60.077 52.632 0.00 0.00 0.00 4.75
5542 5953 1.102809 TTGTGAGTTGTGGCAGGCAG 61.103 55.000 0.00 0.00 0.00 4.85
5543 5954 1.227943 GTGAGTTGTGGCAGGCAGA 60.228 57.895 0.00 0.00 0.00 4.26
5544 5955 1.227943 TGAGTTGTGGCAGGCAGAC 60.228 57.895 0.00 0.00 0.00 3.51
5545 5956 1.968540 GAGTTGTGGCAGGCAGACC 60.969 63.158 0.00 0.00 0.00 3.85
5546 5957 2.203337 GTTGTGGCAGGCAGACCA 60.203 61.111 0.00 0.00 39.06 4.02
5547 5958 1.827789 GTTGTGGCAGGCAGACCAA 60.828 57.895 0.00 0.00 37.79 3.67
5548 5959 1.076412 TTGTGGCAGGCAGACCAAA 60.076 52.632 0.00 0.00 37.79 3.28
5549 5960 1.108727 TTGTGGCAGGCAGACCAAAG 61.109 55.000 0.00 0.00 37.79 2.77
5550 5961 1.529244 GTGGCAGGCAGACCAAAGT 60.529 57.895 0.00 0.00 37.79 2.66
5551 5962 1.529010 TGGCAGGCAGACCAAAGTG 60.529 57.895 0.00 0.00 39.06 3.16
5552 5963 2.647297 GCAGGCAGACCAAAGTGC 59.353 61.111 0.00 0.00 39.06 4.40
5553 5964 2.195567 GCAGGCAGACCAAAGTGCA 61.196 57.895 0.00 0.00 41.75 4.57
5554 5965 1.737355 GCAGGCAGACCAAAGTGCAA 61.737 55.000 0.00 0.00 41.75 4.08
5555 5966 0.031178 CAGGCAGACCAAAGTGCAAC 59.969 55.000 0.00 0.00 41.75 4.17
5556 5967 0.106519 AGGCAGACCAAAGTGCAACT 60.107 50.000 0.00 0.00 46.20 3.16
5557 5968 0.031178 GGCAGACCAAAGTGCAACTG 59.969 55.000 0.00 0.00 41.36 3.16
5558 5969 3.865825 GGCAGACCAAAGTGCAACTGC 62.866 57.143 0.00 0.00 41.36 4.40
5692 6106 0.466922 GGTAGGCAATGCATCCAGCT 60.467 55.000 7.79 0.00 45.94 4.24
5747 6161 3.559238 CCTTGAAAGTGGCACATGTAC 57.441 47.619 21.41 6.86 44.52 2.90
5749 6163 3.317711 CCTTGAAAGTGGCACATGTACAA 59.682 43.478 21.41 15.65 44.52 2.41
5751 6165 4.566545 TGAAAGTGGCACATGTACAAAG 57.433 40.909 21.41 0.00 44.52 2.77
5752 6166 3.951037 TGAAAGTGGCACATGTACAAAGT 59.049 39.130 21.41 0.00 44.52 2.66
5753 6167 4.400884 TGAAAGTGGCACATGTACAAAGTT 59.599 37.500 21.41 0.00 44.52 2.66
5755 6169 2.622942 AGTGGCACATGTACAAAGTTGG 59.377 45.455 21.41 0.00 44.52 3.77
5756 6170 1.959985 TGGCACATGTACAAAGTTGGG 59.040 47.619 0.00 0.00 0.00 4.12
5757 6171 2.235016 GGCACATGTACAAAGTTGGGA 58.765 47.619 0.00 0.00 0.00 4.37
5758 6172 2.030274 GGCACATGTACAAAGTTGGGAC 60.030 50.000 0.00 0.00 0.00 4.46
5759 6173 2.350388 GCACATGTACAAAGTTGGGACG 60.350 50.000 0.00 0.00 0.00 4.79
5760 6174 1.877443 ACATGTACAAAGTTGGGACGC 59.123 47.619 0.00 0.00 0.00 5.19
5761 6175 2.151202 CATGTACAAAGTTGGGACGCT 58.849 47.619 0.00 0.00 0.00 5.07
5762 6176 2.335316 TGTACAAAGTTGGGACGCTT 57.665 45.000 0.00 0.00 0.00 4.68
5763 6177 3.472283 TGTACAAAGTTGGGACGCTTA 57.528 42.857 0.00 0.00 0.00 3.09
5764 6178 4.010667 TGTACAAAGTTGGGACGCTTAT 57.989 40.909 0.00 0.00 0.00 1.73
5765 6179 4.391155 TGTACAAAGTTGGGACGCTTATT 58.609 39.130 0.00 0.00 0.00 1.40
5766 6180 4.822896 TGTACAAAGTTGGGACGCTTATTT 59.177 37.500 0.00 0.00 0.00 1.40
5767 6181 4.929819 ACAAAGTTGGGACGCTTATTTT 57.070 36.364 0.00 0.00 0.00 1.82
5768 6182 4.616953 ACAAAGTTGGGACGCTTATTTTG 58.383 39.130 0.00 9.65 0.00 2.44
5769 6183 3.934457 AAGTTGGGACGCTTATTTTGG 57.066 42.857 0.00 0.00 0.00 3.28
5770 6184 1.544246 AGTTGGGACGCTTATTTTGGC 59.456 47.619 0.00 0.00 0.00 4.52
5771 6185 1.271102 GTTGGGACGCTTATTTTGGCA 59.729 47.619 0.00 0.00 0.00 4.92
5772 6186 0.885196 TGGGACGCTTATTTTGGCAC 59.115 50.000 0.00 0.00 0.00 5.01
5773 6187 0.179174 GGGACGCTTATTTTGGCACG 60.179 55.000 0.00 0.00 0.00 5.34
5774 6188 0.179174 GGACGCTTATTTTGGCACGG 60.179 55.000 0.00 0.00 0.00 4.94
5775 6189 0.800012 GACGCTTATTTTGGCACGGA 59.200 50.000 0.00 0.00 0.00 4.69
5776 6190 0.802494 ACGCTTATTTTGGCACGGAG 59.198 50.000 0.00 0.00 0.00 4.63
5791 6205 3.204526 CACGGAGGGAGTACTACTGTAG 58.795 54.545 13.13 13.13 0.00 2.74
5793 6207 4.033709 ACGGAGGGAGTACTACTGTAGTA 58.966 47.826 20.74 20.74 40.14 1.82
5805 6219 3.274095 ACTGTAGTAGTACCTCCGTCC 57.726 52.381 5.26 0.00 38.04 4.79
5806 6220 2.843113 ACTGTAGTAGTACCTCCGTCCT 59.157 50.000 5.26 0.00 38.04 3.85
5808 6222 2.092753 TGTAGTAGTACCTCCGTCCTGG 60.093 54.545 5.26 0.00 40.09 4.45
5809 6223 0.998145 AGTAGTACCTCCGTCCTGGT 59.002 55.000 0.00 0.00 39.52 4.00
5810 6224 1.357079 AGTAGTACCTCCGTCCTGGTT 59.643 52.381 0.00 0.00 39.52 3.67
5811 6225 2.174360 GTAGTACCTCCGTCCTGGTTT 58.826 52.381 0.00 0.00 39.52 3.27
5812 6226 2.610438 AGTACCTCCGTCCTGGTTTA 57.390 50.000 0.00 0.00 39.52 2.01
5814 6228 3.447950 AGTACCTCCGTCCTGGTTTATT 58.552 45.455 0.00 0.00 39.52 1.40
5816 6230 4.648307 AGTACCTCCGTCCTGGTTTATTAG 59.352 45.833 0.00 0.00 39.52 1.73
5817 6231 2.169978 ACCTCCGTCCTGGTTTATTAGC 59.830 50.000 0.00 0.00 39.52 3.09
5818 6232 2.484947 CCTCCGTCCTGGTTTATTAGCC 60.485 54.545 0.00 0.00 39.52 3.93
5819 6233 1.487558 TCCGTCCTGGTTTATTAGCCC 59.512 52.381 0.00 0.00 39.52 5.19
5820 6234 1.476291 CCGTCCTGGTTTATTAGCCCC 60.476 57.143 0.00 0.00 0.00 5.80
5821 6235 1.476291 CGTCCTGGTTTATTAGCCCCC 60.476 57.143 0.00 0.00 0.00 5.40
5822 6236 1.850998 GTCCTGGTTTATTAGCCCCCT 59.149 52.381 0.00 0.00 0.00 4.79
5823 6237 2.243994 GTCCTGGTTTATTAGCCCCCTT 59.756 50.000 0.00 0.00 0.00 3.95
5824 6238 2.512476 TCCTGGTTTATTAGCCCCCTTC 59.488 50.000 0.00 0.00 0.00 3.46
5827 6241 3.113824 TGGTTTATTAGCCCCCTTCGTA 58.886 45.455 0.00 0.00 0.00 3.43
5830 6244 5.135383 GGTTTATTAGCCCCCTTCGTATTT 58.865 41.667 0.00 0.00 0.00 1.40
5831 6245 5.595542 GGTTTATTAGCCCCCTTCGTATTTT 59.404 40.000 0.00 0.00 0.00 1.82
5832 6246 6.460537 GGTTTATTAGCCCCCTTCGTATTTTG 60.461 42.308 0.00 0.00 0.00 2.44
5833 6247 3.724732 TTAGCCCCCTTCGTATTTTGT 57.275 42.857 0.00 0.00 0.00 2.83
5834 6248 1.834188 AGCCCCCTTCGTATTTTGTG 58.166 50.000 0.00 0.00 0.00 3.33
5835 6249 0.172578 GCCCCCTTCGTATTTTGTGC 59.827 55.000 0.00 0.00 0.00 4.57
5837 6251 2.942306 GCCCCCTTCGTATTTTGTGCTA 60.942 50.000 0.00 0.00 0.00 3.49
5838 6252 3.349022 CCCCCTTCGTATTTTGTGCTAA 58.651 45.455 0.00 0.00 0.00 3.09
5839 6253 3.759618 CCCCCTTCGTATTTTGTGCTAAA 59.240 43.478 0.00 0.00 0.00 1.85
5841 6255 5.105513 CCCCCTTCGTATTTTGTGCTAAATT 60.106 40.000 0.00 0.00 0.00 1.82
5842 6256 6.394809 CCCCTTCGTATTTTGTGCTAAATTT 58.605 36.000 0.00 0.00 0.00 1.82
5843 6257 6.871492 CCCCTTCGTATTTTGTGCTAAATTTT 59.129 34.615 0.00 0.00 0.00 1.82
5844 6258 7.148656 CCCCTTCGTATTTTGTGCTAAATTTTG 60.149 37.037 0.00 0.00 0.00 2.44
5845 6259 7.596995 CCCTTCGTATTTTGTGCTAAATTTTGA 59.403 33.333 3.69 0.00 0.00 2.69
5846 6260 8.424731 CCTTCGTATTTTGTGCTAAATTTTGAC 58.575 33.333 3.69 0.67 0.00 3.18
5848 6262 9.522804 TTCGTATTTTGTGCTAAATTTTGACTT 57.477 25.926 3.69 0.00 0.00 3.01
5960 6374 8.346476 TCAAAATTTGACACAAAATACGAAGG 57.654 30.769 4.03 0.00 34.08 3.46
5961 6375 7.436673 TCAAAATTTGACACAAAATACGAAGGG 59.563 33.333 4.03 0.00 34.08 3.95
5962 6376 4.839668 TTTGACACAAAATACGAAGGGG 57.160 40.909 0.00 0.00 0.00 4.79
5963 6377 3.773418 TGACACAAAATACGAAGGGGA 57.227 42.857 0.00 0.00 0.00 4.81
5964 6378 3.404899 TGACACAAAATACGAAGGGGAC 58.595 45.455 0.00 0.00 0.00 4.46
5979 6393 2.891191 GGGACCAATAAACCTGGACA 57.109 50.000 0.00 0.00 37.40 4.02
5980 6394 3.382083 GGGACCAATAAACCTGGACAT 57.618 47.619 0.00 0.00 37.40 3.06
5981 6395 4.513406 GGGACCAATAAACCTGGACATA 57.487 45.455 0.00 0.00 37.40 2.29
5982 6396 4.461198 GGGACCAATAAACCTGGACATAG 58.539 47.826 0.00 0.00 37.40 2.23
5983 6397 4.165372 GGGACCAATAAACCTGGACATAGA 59.835 45.833 0.00 0.00 37.40 1.98
5984 6398 5.163088 GGGACCAATAAACCTGGACATAGAT 60.163 44.000 0.00 0.00 37.40 1.98
5985 6399 6.043938 GGGACCAATAAACCTGGACATAGATA 59.956 42.308 0.00 0.00 37.40 1.98
5986 6400 7.420913 GGGACCAATAAACCTGGACATAGATAA 60.421 40.741 0.00 0.00 37.40 1.75
6021 6435 4.162131 AGCTTGGAGGTTTGTTTGACAATT 59.838 37.500 0.00 0.00 38.00 2.32
6059 6473 6.428385 AGACAATTTTATTTCTCAGCTCGG 57.572 37.500 0.00 0.00 0.00 4.63
6078 6492 4.714632 TCGGAAACAAAACCTCATCTTCT 58.285 39.130 0.00 0.00 0.00 2.85
6109 6523 2.934887 TGGTCTCGGGTACATTCGATA 58.065 47.619 0.00 0.00 34.77 2.92
6110 6524 3.493334 TGGTCTCGGGTACATTCGATAT 58.507 45.455 0.00 0.00 34.77 1.63
6128 6542 7.704578 TCGATATACAAGGATTAAGAGAGGG 57.295 40.000 0.00 0.00 0.00 4.30
6156 6570 6.726490 TGACATAACTAGGGATAGACCAAC 57.274 41.667 0.00 0.00 41.20 3.77
6202 6616 5.240713 CAGAGCACTGGTCCAATTAAATC 57.759 43.478 2.82 0.00 40.14 2.17
6231 6651 0.883833 GGCACAGAACAAGGACATGG 59.116 55.000 0.00 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 7.147724 CCTGGACTAGATGTTTCTAATGGTACA 60.148 40.741 0.00 0.00 36.54 2.90
53 54 0.043334 ACAGCCCCTGGACTAGATGT 59.957 55.000 0.00 0.00 35.51 3.06
55 56 1.341156 GCACAGCCCCTGGACTAGAT 61.341 60.000 0.00 0.00 35.51 1.98
85 86 7.680730 AGGAAGCTGATGATACGGTAAAATAT 58.319 34.615 0.00 0.00 0.00 1.28
86 87 7.062749 AGGAAGCTGATGATACGGTAAAATA 57.937 36.000 0.00 0.00 0.00 1.40
114 115 2.535485 TATGTGCTTGAGGTGCCCGG 62.535 60.000 0.00 0.00 0.00 5.73
147 148 4.974275 GTGTTCAGCATATGTCATCATTGC 59.026 41.667 4.29 7.05 37.82 3.56
189 190 2.589610 ATCCAGGCTAGCCCACTCGA 62.590 60.000 30.42 17.68 36.58 4.04
202 203 1.305213 CACCCCCACCAAATCCAGG 60.305 63.158 0.00 0.00 0.00 4.45
203 204 1.984026 GCACCCCCACCAAATCCAG 60.984 63.158 0.00 0.00 0.00 3.86
207 208 2.439553 ATCGTGCACCCCCACCAAAT 62.440 55.000 12.15 0.00 32.10 2.32
234 235 3.425525 GGTGAGTGATGATAACGCGTATG 59.574 47.826 14.46 0.00 0.00 2.39
236 237 2.540157 CGGTGAGTGATGATAACGCGTA 60.540 50.000 14.46 0.00 0.00 4.42
239 240 1.209128 CCGGTGAGTGATGATAACGC 58.791 55.000 0.00 0.00 0.00 4.84
241 242 3.099267 CTCCCGGTGAGTGATGATAAC 57.901 52.381 0.00 0.00 36.27 1.89
255 263 1.408453 GGGATTCCACCTACTCCCGG 61.408 65.000 4.80 0.00 38.15 5.73
291 299 1.270893 GCGAGAATAGGGGATTCCACC 60.271 57.143 0.00 1.64 44.54 4.61
292 300 1.694696 AGCGAGAATAGGGGATTCCAC 59.305 52.381 4.80 0.00 44.54 4.02
324 332 6.862090 GTGCGGTTCTTACGAATATCTCTTAT 59.138 38.462 0.00 0.00 0.00 1.73
345 353 2.852495 ATAGAGCGGTTGGGTGTGCG 62.852 60.000 0.00 0.00 0.00 5.34
356 364 1.760613 TGGGTTGGTCTAATAGAGCGG 59.239 52.381 13.87 0.00 45.17 5.52
370 378 2.039746 TGGGTGTGAAGTAGATGGGTTG 59.960 50.000 0.00 0.00 0.00 3.77
395 403 9.700831 AAGAAAATTGGCTCATACTAGGTTAAT 57.299 29.630 0.00 0.00 0.00 1.40
405 413 7.039152 TCACAAATGGAAGAAAATTGGCTCATA 60.039 33.333 0.00 0.00 0.00 2.15
413 421 8.791327 AAACTTGTCACAAATGGAAGAAAATT 57.209 26.923 0.00 0.00 0.00 1.82
474 482 1.423794 AAAGGAAGGAGGCCGGTGAA 61.424 55.000 1.90 0.00 0.00 3.18
475 483 1.838073 GAAAGGAAGGAGGCCGGTGA 61.838 60.000 1.90 0.00 0.00 4.02
478 486 1.222113 GAGAAAGGAAGGAGGCCGG 59.778 63.158 0.00 0.00 0.00 6.13
496 504 4.840680 AGGGGAAGAGGAAAAAGGAAAATG 59.159 41.667 0.00 0.00 0.00 2.32
497 505 5.093236 AGGGGAAGAGGAAAAAGGAAAAT 57.907 39.130 0.00 0.00 0.00 1.82
502 535 6.350194 CGAATTTTAGGGGAAGAGGAAAAAGG 60.350 42.308 0.00 0.00 0.00 3.11
516 549 7.938563 TTGAAAATGTTCACGAATTTTAGGG 57.061 32.000 0.00 0.00 43.52 3.53
701 735 9.646522 AAACTGGCTATTGGTTTATTGATAGAT 57.353 29.630 0.00 0.00 32.39 1.98
779 814 9.914131 GCACCAGTTTCTTTTCTCTTTAATAAT 57.086 29.630 0.00 0.00 0.00 1.28
790 825 1.683385 AGGCTGCACCAGTTTCTTTTC 59.317 47.619 0.50 0.00 43.14 2.29
800 835 4.083003 CGAAATTAAAAGTAGGCTGCACCA 60.083 41.667 5.14 0.00 43.14 4.17
828 911 2.005451 CATTCCTTTCTCCTCGTGCTG 58.995 52.381 0.00 0.00 0.00 4.41
830 913 2.093973 TCTCATTCCTTTCTCCTCGTGC 60.094 50.000 0.00 0.00 0.00 5.34
831 914 3.779759 CTCTCATTCCTTTCTCCTCGTG 58.220 50.000 0.00 0.00 0.00 4.35
837 920 1.932511 CAGCGCTCTCATTCCTTTCTC 59.067 52.381 7.13 0.00 0.00 2.87
838 921 1.277557 ACAGCGCTCTCATTCCTTTCT 59.722 47.619 7.13 0.00 0.00 2.52
839 922 1.731720 ACAGCGCTCTCATTCCTTTC 58.268 50.000 7.13 0.00 0.00 2.62
842 925 2.544694 CGATAACAGCGCTCTCATTCCT 60.545 50.000 7.13 0.00 0.00 3.36
860 943 2.959484 CGGATATGGGCTGGCCGAT 61.959 63.158 16.08 13.23 44.43 4.18
865 948 0.898320 CTACTCCGGATATGGGCTGG 59.102 60.000 3.57 0.00 0.00 4.85
890 984 5.233689 GGCCGTGTAGTAGATTTTGTGTATC 59.766 44.000 0.00 0.00 0.00 2.24
891 985 5.114081 GGCCGTGTAGTAGATTTTGTGTAT 58.886 41.667 0.00 0.00 0.00 2.29
892 986 4.021280 TGGCCGTGTAGTAGATTTTGTGTA 60.021 41.667 0.00 0.00 0.00 2.90
915 1016 4.388499 CGTAGCGGGCCTTGTGGT 62.388 66.667 0.84 0.00 35.27 4.16
1160 1268 1.006102 CAGTTGCGGAACTCGTCCT 60.006 57.895 20.31 0.00 45.36 3.85
1323 1431 3.223589 GAGAGGCGGAGGAGGAGC 61.224 72.222 0.00 0.00 0.00 4.70
1324 1432 2.520741 GGAGAGGCGGAGGAGGAG 60.521 72.222 0.00 0.00 0.00 3.69
1325 1433 4.507916 CGGAGAGGCGGAGGAGGA 62.508 72.222 0.00 0.00 0.00 3.71
1605 2013 3.285371 TCGAAGTCGAAGAGGCCC 58.715 61.111 0.00 0.00 46.30 5.80
1896 2304 2.380941 CCATGTGCAATCATGAAGGGA 58.619 47.619 16.64 0.00 45.41 4.20
2004 2412 4.455877 GTGTCAATTCTTCCATTCTCCGTT 59.544 41.667 0.00 0.00 0.00 4.44
2016 2424 2.254546 TCCACAGCGTGTCAATTCTT 57.745 45.000 7.68 0.00 0.00 2.52
2179 2587 1.141881 CAACATCCTCCTCGTCCCG 59.858 63.158 0.00 0.00 0.00 5.14
2547 2955 7.775561 GGAGTTGATCCCTTGTAGTTTTGATAT 59.224 37.037 0.00 0.00 43.01 1.63
2577 2985 4.637276 TCATGTCGTTCCAAATGTACAGT 58.363 39.130 0.33 0.00 0.00 3.55
2723 3131 2.039084 CCCTAGGCATGGTGACCTATTC 59.961 54.545 2.05 0.00 37.88 1.75
3013 3421 9.391006 GGATTATGAGGTGAAGTTGTAATGTAA 57.609 33.333 0.00 0.00 0.00 2.41
3061 3469 2.035066 GCACCTGTCAAAGCTTCACATT 59.965 45.455 10.74 0.89 0.00 2.71
3069 3477 1.237285 ACATCCGCACCTGTCAAAGC 61.237 55.000 0.00 0.00 0.00 3.51
3176 3584 1.813513 GTCTCTTGGTGTCATGGTGG 58.186 55.000 0.00 0.00 0.00 4.61
3194 3602 1.684869 CCAAATAACCATGGCTCCCGT 60.685 52.381 13.04 0.00 0.00 5.28
3337 3745 0.879839 TGTGCAGTCACGTCATGGTG 60.880 55.000 0.00 0.00 46.01 4.17
3352 3760 7.483059 GCTTAAATTTTCTAGATGACAGTGTGC 59.517 37.037 0.00 0.00 0.00 4.57
3416 3824 7.020914 ACAGCTTAAATTTTCCTCGATCATC 57.979 36.000 0.00 0.00 0.00 2.92
3417 3825 7.396540 AACAGCTTAAATTTTCCTCGATCAT 57.603 32.000 0.00 0.00 0.00 2.45
3419 3827 8.234546 TGTTAACAGCTTAAATTTTCCTCGATC 58.765 33.333 3.59 0.00 0.00 3.69
3420 3828 8.106247 TGTTAACAGCTTAAATTTTCCTCGAT 57.894 30.769 3.59 0.00 0.00 3.59
3422 3830 7.326063 CCTTGTTAACAGCTTAAATTTTCCTCG 59.674 37.037 8.56 0.00 0.00 4.63
3423 3831 7.116376 GCCTTGTTAACAGCTTAAATTTTCCTC 59.884 37.037 8.56 0.00 0.00 3.71
3424 3832 6.929049 GCCTTGTTAACAGCTTAAATTTTCCT 59.071 34.615 8.56 0.00 0.00 3.36
3425 3833 6.929049 AGCCTTGTTAACAGCTTAAATTTTCC 59.071 34.615 14.73 0.00 29.27 3.13
3426 3834 7.946655 AGCCTTGTTAACAGCTTAAATTTTC 57.053 32.000 14.73 0.00 29.27 2.29
3427 3835 9.256477 GTTAGCCTTGTTAACAGCTTAAATTTT 57.744 29.630 22.77 4.13 36.79 1.82
3428 3836 8.417884 TGTTAGCCTTGTTAACAGCTTAAATTT 58.582 29.630 22.77 0.00 35.09 1.82
3429 3837 7.947282 TGTTAGCCTTGTTAACAGCTTAAATT 58.053 30.769 22.77 5.31 35.09 1.82
3430 3838 7.519032 TGTTAGCCTTGTTAACAGCTTAAAT 57.481 32.000 22.77 5.91 35.09 1.40
3431 3839 6.945938 TGTTAGCCTTGTTAACAGCTTAAA 57.054 33.333 22.77 12.34 35.09 1.52
3432 3840 7.881232 AGTATGTTAGCCTTGTTAACAGCTTAA 59.119 33.333 22.77 13.94 41.09 1.85
3433 3841 7.391620 AGTATGTTAGCCTTGTTAACAGCTTA 58.608 34.615 22.77 14.00 41.09 3.09
3434 3842 6.238648 AGTATGTTAGCCTTGTTAACAGCTT 58.761 36.000 22.77 10.89 41.09 3.74
3435 3843 5.805728 AGTATGTTAGCCTTGTTAACAGCT 58.194 37.500 21.69 21.69 41.09 4.24
3436 3844 5.642063 TGAGTATGTTAGCCTTGTTAACAGC 59.358 40.000 8.56 9.90 41.09 4.40
3437 3845 7.849804 ATGAGTATGTTAGCCTTGTTAACAG 57.150 36.000 8.56 0.00 41.09 3.16
3438 3846 7.663905 ACAATGAGTATGTTAGCCTTGTTAACA 59.336 33.333 3.59 3.59 41.74 2.41
3439 3847 8.040716 ACAATGAGTATGTTAGCCTTGTTAAC 57.959 34.615 0.00 0.00 31.51 2.01
3440 3848 9.158233 GTACAATGAGTATGTTAGCCTTGTTAA 57.842 33.333 0.00 0.00 34.67 2.01
3441 3849 8.537016 AGTACAATGAGTATGTTAGCCTTGTTA 58.463 33.333 0.00 0.00 34.67 2.41
3442 3850 7.394816 AGTACAATGAGTATGTTAGCCTTGTT 58.605 34.615 0.00 0.00 34.67 2.83
3443 3851 6.947464 AGTACAATGAGTATGTTAGCCTTGT 58.053 36.000 0.00 0.00 34.67 3.16
3548 3956 4.499183 CAGTTACACTAGCCTCTTGGAAG 58.501 47.826 0.00 0.00 34.57 3.46
3599 4007 4.351874 TTCCTTGTCGTCAGGAAATTCT 57.648 40.909 9.41 0.00 38.61 2.40
3668 4076 4.000988 TCACCTCTTCGTAAATTCCTTGC 58.999 43.478 0.00 0.00 0.00 4.01
3719 4127 7.967854 CGTTTTCCAGCAAAATATGAGTGATTA 59.032 33.333 0.00 0.00 36.35 1.75
3763 4171 9.626045 GCCCTGCATGAAGTTATTATATTAAAC 57.374 33.333 0.00 0.00 0.00 2.01
3803 4211 1.072648 CCGTTCCAGGAAGGTAAACCA 59.927 52.381 18.61 0.00 38.89 3.67
3870 4278 2.097954 TGAAACTTGCAGCTTGTGTGAG 59.902 45.455 0.00 0.00 0.00 3.51
4171 4579 5.280654 AGAAAAAGGTTCACATGCAACAT 57.719 34.783 9.67 0.76 0.00 2.71
4172 4580 4.734398 AGAAAAAGGTTCACATGCAACA 57.266 36.364 9.67 0.00 0.00 3.33
4217 4625 4.038282 GGAAGGAGCTAGCTAAGTAAGGTC 59.962 50.000 19.38 1.34 37.13 3.85
4260 4668 7.043788 CGCAATATGATGTATAGTTGATCCTCG 60.044 40.741 0.00 0.00 0.00 4.63
4286 4694 9.971922 AATGAGCCTAATAATTTAACAAGCATC 57.028 29.630 0.00 0.00 0.00 3.91
4386 4794 8.972458 TGGTCATATATTTAGCTAGTTTTGCA 57.028 30.769 0.00 0.00 0.00 4.08
4447 4855 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
4448 4856 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
4449 4857 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
4450 4858 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
4451 4859 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
4452 4860 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
4453 4861 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
4454 4862 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
4455 4863 5.106869 CGTTTTGATGACAAGTATTTCCGGA 60.107 40.000 0.00 0.00 37.32 5.14
4456 4864 5.086058 CGTTTTGATGACAAGTATTTCCGG 58.914 41.667 0.00 0.00 37.32 5.14
4457 4865 5.922546 TCGTTTTGATGACAAGTATTTCCG 58.077 37.500 0.00 0.00 37.32 4.30
4458 4866 9.834628 TTATTCGTTTTGATGACAAGTATTTCC 57.165 29.630 0.00 0.00 37.32 3.13
4462 4870 9.840427 CCTTTTATTCGTTTTGATGACAAGTAT 57.160 29.630 0.00 0.00 37.32 2.12
4463 4871 8.293867 CCCTTTTATTCGTTTTGATGACAAGTA 58.706 33.333 0.00 0.00 37.32 2.24
4464 4872 7.145323 CCCTTTTATTCGTTTTGATGACAAGT 58.855 34.615 0.00 0.00 37.32 3.16
4465 4873 6.586082 CCCCTTTTATTCGTTTTGATGACAAG 59.414 38.462 0.00 0.00 37.32 3.16
4466 4874 6.265649 TCCCCTTTTATTCGTTTTGATGACAA 59.734 34.615 0.00 0.00 0.00 3.18
4467 4875 5.770663 TCCCCTTTTATTCGTTTTGATGACA 59.229 36.000 0.00 0.00 0.00 3.58
4468 4876 6.262193 TCCCCTTTTATTCGTTTTGATGAC 57.738 37.500 0.00 0.00 0.00 3.06
4469 4877 6.435904 ACATCCCCTTTTATTCGTTTTGATGA 59.564 34.615 0.00 0.00 32.39 2.92
4470 4878 6.630071 ACATCCCCTTTTATTCGTTTTGATG 58.370 36.000 0.00 0.00 33.80 3.07
4471 4879 6.850752 ACATCCCCTTTTATTCGTTTTGAT 57.149 33.333 0.00 0.00 0.00 2.57
4472 4880 7.832187 AGATACATCCCCTTTTATTCGTTTTGA 59.168 33.333 0.00 0.00 0.00 2.69
4473 4881 7.915397 CAGATACATCCCCTTTTATTCGTTTTG 59.085 37.037 0.00 0.00 0.00 2.44
4474 4882 7.068226 CCAGATACATCCCCTTTTATTCGTTTT 59.932 37.037 0.00 0.00 0.00 2.43
4475 4883 6.546034 CCAGATACATCCCCTTTTATTCGTTT 59.454 38.462 0.00 0.00 0.00 3.60
4476 4884 6.062095 CCAGATACATCCCCTTTTATTCGTT 58.938 40.000 0.00 0.00 0.00 3.85
4477 4885 5.368523 TCCAGATACATCCCCTTTTATTCGT 59.631 40.000 0.00 0.00 0.00 3.85
4478 4886 5.865085 TCCAGATACATCCCCTTTTATTCG 58.135 41.667 0.00 0.00 0.00 3.34
4479 4887 7.234355 ACATCCAGATACATCCCCTTTTATTC 58.766 38.462 0.00 0.00 0.00 1.75
4480 4888 7.166758 ACATCCAGATACATCCCCTTTTATT 57.833 36.000 0.00 0.00 0.00 1.40
4481 4889 6.786843 ACATCCAGATACATCCCCTTTTAT 57.213 37.500 0.00 0.00 0.00 1.40
4482 4890 7.888514 ATACATCCAGATACATCCCCTTTTA 57.111 36.000 0.00 0.00 0.00 1.52
4483 4891 6.786843 ATACATCCAGATACATCCCCTTTT 57.213 37.500 0.00 0.00 0.00 2.27
4484 4892 8.468547 AATATACATCCAGATACATCCCCTTT 57.531 34.615 0.00 0.00 0.00 3.11
4485 4893 9.218525 CTAATATACATCCAGATACATCCCCTT 57.781 37.037 0.00 0.00 0.00 3.95
4486 4894 8.355256 ACTAATATACATCCAGATACATCCCCT 58.645 37.037 0.00 0.00 0.00 4.79
4487 4895 8.554490 ACTAATATACATCCAGATACATCCCC 57.446 38.462 0.00 0.00 0.00 4.81
4509 4917 9.322769 GGATAAAAGGGGATGTATCTAGAACTA 57.677 37.037 0.00 0.00 0.00 2.24
4510 4918 7.794683 TGGATAAAAGGGGATGTATCTAGAACT 59.205 37.037 0.00 0.00 0.00 3.01
4511 4919 7.974504 TGGATAAAAGGGGATGTATCTAGAAC 58.025 38.462 0.00 0.00 0.00 3.01
4512 4920 8.575736 TTGGATAAAAGGGGATGTATCTAGAA 57.424 34.615 0.00 0.00 0.00 2.10
4513 4921 8.757307 ATTGGATAAAAGGGGATGTATCTAGA 57.243 34.615 0.00 0.00 0.00 2.43
4514 4922 9.813826 AAATTGGATAAAAGGGGATGTATCTAG 57.186 33.333 0.00 0.00 0.00 2.43
4515 4923 9.586732 CAAATTGGATAAAAGGGGATGTATCTA 57.413 33.333 0.00 0.00 0.00 1.98
4516 4924 8.288812 TCAAATTGGATAAAAGGGGATGTATCT 58.711 33.333 0.00 0.00 0.00 1.98
4517 4925 8.477419 TCAAATTGGATAAAAGGGGATGTATC 57.523 34.615 0.00 0.00 0.00 2.24
4518 4926 8.873144 CATCAAATTGGATAAAAGGGGATGTAT 58.127 33.333 0.00 0.00 0.00 2.29
4519 4927 8.064389 TCATCAAATTGGATAAAAGGGGATGTA 58.936 33.333 0.00 0.00 32.47 2.29
4520 4928 6.902416 TCATCAAATTGGATAAAAGGGGATGT 59.098 34.615 0.00 0.00 32.47 3.06
4521 4929 7.147689 TGTCATCAAATTGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 0.00 3.51
4522 4930 6.902416 TGTCATCAAATTGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 0.00 3.85
4523 4931 6.259893 TGTCATCAAATTGGATAAAAGGGGA 58.740 36.000 0.00 0.00 0.00 4.81
4524 4932 6.543430 TGTCATCAAATTGGATAAAAGGGG 57.457 37.500 0.00 0.00 0.00 4.79
4525 4933 7.614494 ACTTGTCATCAAATTGGATAAAAGGG 58.386 34.615 12.52 0.00 32.87 3.95
4532 4940 7.975616 CCGAAAATACTTGTCATCAAATTGGAT 59.024 33.333 0.00 0.00 32.87 3.41
4533 4941 7.175816 TCCGAAAATACTTGTCATCAAATTGGA 59.824 33.333 0.00 0.00 32.87 3.53
4534 4942 7.273381 GTCCGAAAATACTTGTCATCAAATTGG 59.727 37.037 0.00 0.00 32.87 3.16
4535 4943 7.807433 TGTCCGAAAATACTTGTCATCAAATTG 59.193 33.333 0.00 0.00 32.87 2.32
4536 4944 7.881142 TGTCCGAAAATACTTGTCATCAAATT 58.119 30.769 0.00 0.00 32.87 1.82
4537 4945 7.390440 TCTGTCCGAAAATACTTGTCATCAAAT 59.610 33.333 0.00 0.00 32.87 2.32
4538 4946 6.708502 TCTGTCCGAAAATACTTGTCATCAAA 59.291 34.615 0.00 0.00 32.87 2.69
4539 4947 6.227522 TCTGTCCGAAAATACTTGTCATCAA 58.772 36.000 0.00 0.00 0.00 2.57
4540 4948 5.789521 TCTGTCCGAAAATACTTGTCATCA 58.210 37.500 0.00 0.00 0.00 3.07
4541 4949 5.292101 CCTCTGTCCGAAAATACTTGTCATC 59.708 44.000 0.00 0.00 0.00 2.92
4542 4950 5.178797 CCTCTGTCCGAAAATACTTGTCAT 58.821 41.667 0.00 0.00 0.00 3.06
4543 4951 4.562757 CCCTCTGTCCGAAAATACTTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
4544 4952 3.933332 CCCTCTGTCCGAAAATACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
4545 4953 3.581332 TCCCTCTGTCCGAAAATACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
4546 4954 4.184629 CTCCCTCTGTCCGAAAATACTTG 58.815 47.826 0.00 0.00 0.00 3.16
4547 4955 3.838903 ACTCCCTCTGTCCGAAAATACTT 59.161 43.478 0.00 0.00 0.00 2.24
4548 4956 3.442076 ACTCCCTCTGTCCGAAAATACT 58.558 45.455 0.00 0.00 0.00 2.12
4549 4957 3.889520 ACTCCCTCTGTCCGAAAATAC 57.110 47.619 0.00 0.00 0.00 1.89
4550 4958 4.346730 TGTACTCCCTCTGTCCGAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
4551 4959 3.170717 TGTACTCCCTCTGTCCGAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
4552 4960 2.600790 TGTACTCCCTCTGTCCGAAAA 58.399 47.619 0.00 0.00 0.00 2.29
4553 4961 2.297698 TGTACTCCCTCTGTCCGAAA 57.702 50.000 0.00 0.00 0.00 3.46
4554 4962 2.526888 ATGTACTCCCTCTGTCCGAA 57.473 50.000 0.00 0.00 0.00 4.30
4555 4963 3.878237 ATATGTACTCCCTCTGTCCGA 57.122 47.619 0.00 0.00 0.00 4.55
4556 4964 5.048643 CACTAATATGTACTCCCTCTGTCCG 60.049 48.000 0.00 0.00 0.00 4.79
4557 4965 5.834204 ACACTAATATGTACTCCCTCTGTCC 59.166 44.000 0.00 0.00 0.00 4.02
4558 4966 6.239064 CCACACTAATATGTACTCCCTCTGTC 60.239 46.154 0.00 0.00 0.00 3.51
4559 4967 5.598830 CCACACTAATATGTACTCCCTCTGT 59.401 44.000 0.00 0.00 0.00 3.41
4560 4968 5.598830 ACCACACTAATATGTACTCCCTCTG 59.401 44.000 0.00 0.00 0.00 3.35
4561 4969 5.778542 ACCACACTAATATGTACTCCCTCT 58.221 41.667 0.00 0.00 0.00 3.69
4562 4970 6.481434 AACCACACTAATATGTACTCCCTC 57.519 41.667 0.00 0.00 0.00 4.30
4563 4971 6.886178 AAACCACACTAATATGTACTCCCT 57.114 37.500 0.00 0.00 0.00 4.20
4564 4972 9.269453 GAATAAACCACACTAATATGTACTCCC 57.731 37.037 0.00 0.00 0.00 4.30
4575 4983 9.085645 TCTACTTCAGAGAATAAACCACACTAA 57.914 33.333 0.00 0.00 0.00 2.24
4624 5032 4.897509 TGAGGGCTATCACCTTATCATG 57.102 45.455 0.00 0.00 38.79 3.07
4630 5038 3.321950 AGCTATTGAGGGCTATCACCTT 58.678 45.455 0.00 0.00 38.79 3.50
4788 5196 7.819900 ACACACTCAGTTGAATATACCTTCTTC 59.180 37.037 0.00 0.00 0.00 2.87
4940 5348 2.431683 GCCTCCTGACTGTTGGCA 59.568 61.111 0.00 0.00 42.79 4.92
5064 5472 1.482593 ACTACGCTTCTAGCATTGCCT 59.517 47.619 4.70 0.00 42.58 4.75
5147 5555 4.832266 ACCAGGTACATGCAGAAATTTTGA 59.168 37.500 0.96 0.00 0.00 2.69
5345 5753 5.376625 TGATGGGATTACAATCTTAGGCAC 58.623 41.667 2.19 0.00 35.73 5.01
5426 5834 8.996024 AATGGTATTATTTGTTACCTTTGTGC 57.004 30.769 0.00 0.00 33.90 4.57
5449 5857 4.139786 AGTGTGTGCATTCTGTCTGAAAT 58.860 39.130 0.00 0.00 38.29 2.17
5451 5859 3.198409 AGTGTGTGCATTCTGTCTGAA 57.802 42.857 0.00 0.00 39.24 3.02
5468 5876 8.660373 CCATAACTAACTCAAGCTCTTAAAGTG 58.340 37.037 0.00 0.00 0.00 3.16
5524 5935 1.526686 CTGCCTGCCACAACTCACA 60.527 57.895 0.00 0.00 0.00 3.58
5525 5936 1.227943 TCTGCCTGCCACAACTCAC 60.228 57.895 0.00 0.00 0.00 3.51
5526 5937 1.227943 GTCTGCCTGCCACAACTCA 60.228 57.895 0.00 0.00 0.00 3.41
5527 5938 1.968540 GGTCTGCCTGCCACAACTC 60.969 63.158 0.00 0.00 0.00 3.01
5528 5939 2.113986 GGTCTGCCTGCCACAACT 59.886 61.111 0.00 0.00 0.00 3.16
5529 5940 1.391157 TTTGGTCTGCCTGCCACAAC 61.391 55.000 0.00 0.00 34.02 3.32
5530 5941 1.076412 TTTGGTCTGCCTGCCACAA 60.076 52.632 0.00 0.00 34.02 3.33
5531 5942 1.529010 CTTTGGTCTGCCTGCCACA 60.529 57.895 0.00 0.00 34.02 4.17
5532 5943 1.529244 ACTTTGGTCTGCCTGCCAC 60.529 57.895 0.00 0.00 34.02 5.01
5533 5944 1.529010 CACTTTGGTCTGCCTGCCA 60.529 57.895 0.00 0.00 35.27 4.92
5534 5945 2.924105 GCACTTTGGTCTGCCTGCC 61.924 63.158 0.00 0.00 35.27 4.85
5535 5946 1.737355 TTGCACTTTGGTCTGCCTGC 61.737 55.000 0.00 0.00 34.10 4.85
5536 5947 0.031178 GTTGCACTTTGGTCTGCCTG 59.969 55.000 0.00 0.00 35.27 4.85
5537 5948 0.106519 AGTTGCACTTTGGTCTGCCT 60.107 50.000 0.00 0.00 35.27 4.75
5538 5949 0.031178 CAGTTGCACTTTGGTCTGCC 59.969 55.000 0.00 0.00 0.00 4.85
5539 5950 0.595825 GCAGTTGCACTTTGGTCTGC 60.596 55.000 0.00 0.00 41.59 4.26
5540 5951 3.557207 GCAGTTGCACTTTGGTCTG 57.443 52.632 0.00 0.00 41.59 3.51
5553 5964 1.745087 CCACAACTCACAACTGCAGTT 59.255 47.619 26.36 26.36 39.12 3.16
5554 5965 1.382522 CCACAACTCACAACTGCAGT 58.617 50.000 15.25 15.25 0.00 4.40
5555 5966 0.029834 GCCACAACTCACAACTGCAG 59.970 55.000 13.48 13.48 0.00 4.41
5556 5967 0.679321 TGCCACAACTCACAACTGCA 60.679 50.000 0.00 0.00 0.00 4.41
5557 5968 0.029834 CTGCCACAACTCACAACTGC 59.970 55.000 0.00 0.00 0.00 4.40
5558 5969 0.664761 CCTGCCACAACTCACAACTG 59.335 55.000 0.00 0.00 0.00 3.16
5559 5970 1.103398 GCCTGCCACAACTCACAACT 61.103 55.000 0.00 0.00 0.00 3.16
5560 5971 1.360192 GCCTGCCACAACTCACAAC 59.640 57.895 0.00 0.00 0.00 3.32
5561 5972 1.077140 TGCCTGCCACAACTCACAA 60.077 52.632 0.00 0.00 0.00 3.33
5621 6032 9.965824 TGTAAACGTTATAATACTAACTAGCCC 57.034 33.333 0.00 0.00 30.88 5.19
5692 6106 2.119611 TCGGAACAGAGGCTGGGA 59.880 61.111 0.00 0.00 35.51 4.37
5740 6154 1.877443 GCGTCCCAACTTTGTACATGT 59.123 47.619 2.69 2.69 0.00 3.21
5744 6158 5.366829 AAATAAGCGTCCCAACTTTGTAC 57.633 39.130 0.00 0.00 0.00 2.90
5745 6159 5.278561 CCAAAATAAGCGTCCCAACTTTGTA 60.279 40.000 0.00 0.00 0.00 2.41
5746 6160 4.500716 CCAAAATAAGCGTCCCAACTTTGT 60.501 41.667 0.00 0.00 0.00 2.83
5747 6161 3.987220 CCAAAATAAGCGTCCCAACTTTG 59.013 43.478 0.00 0.00 0.00 2.77
5749 6163 2.029380 GCCAAAATAAGCGTCCCAACTT 60.029 45.455 0.00 0.00 0.00 2.66
5751 6165 1.271102 TGCCAAAATAAGCGTCCCAAC 59.729 47.619 0.00 0.00 0.00 3.77
5752 6166 1.271102 GTGCCAAAATAAGCGTCCCAA 59.729 47.619 0.00 0.00 0.00 4.12
5753 6167 0.885196 GTGCCAAAATAAGCGTCCCA 59.115 50.000 0.00 0.00 0.00 4.37
5755 6169 0.179174 CCGTGCCAAAATAAGCGTCC 60.179 55.000 0.00 0.00 0.00 4.79
5756 6170 0.800012 TCCGTGCCAAAATAAGCGTC 59.200 50.000 0.00 0.00 0.00 5.19
5757 6171 0.802494 CTCCGTGCCAAAATAAGCGT 59.198 50.000 0.00 0.00 0.00 5.07
5758 6172 0.098728 CCTCCGTGCCAAAATAAGCG 59.901 55.000 0.00 0.00 0.00 4.68
5759 6173 0.455815 CCCTCCGTGCCAAAATAAGC 59.544 55.000 0.00 0.00 0.00 3.09
5760 6174 2.017049 CTCCCTCCGTGCCAAAATAAG 58.983 52.381 0.00 0.00 0.00 1.73
5761 6175 1.353022 ACTCCCTCCGTGCCAAAATAA 59.647 47.619 0.00 0.00 0.00 1.40
5762 6176 0.988832 ACTCCCTCCGTGCCAAAATA 59.011 50.000 0.00 0.00 0.00 1.40
5763 6177 0.988832 TACTCCCTCCGTGCCAAAAT 59.011 50.000 0.00 0.00 0.00 1.82
5764 6178 0.035739 GTACTCCCTCCGTGCCAAAA 59.964 55.000 0.00 0.00 0.00 2.44
5765 6179 0.834687 AGTACTCCCTCCGTGCCAAA 60.835 55.000 0.00 0.00 0.00 3.28
5766 6180 0.040058 TAGTACTCCCTCCGTGCCAA 59.960 55.000 0.00 0.00 0.00 4.52
5767 6181 0.682209 GTAGTACTCCCTCCGTGCCA 60.682 60.000 0.00 0.00 0.00 4.92
5768 6182 0.395448 AGTAGTACTCCCTCCGTGCC 60.395 60.000 0.00 0.00 0.00 5.01
5769 6183 0.739561 CAGTAGTACTCCCTCCGTGC 59.260 60.000 0.00 0.00 0.00 5.34
5770 6184 2.125773 ACAGTAGTACTCCCTCCGTG 57.874 55.000 0.00 0.00 0.00 4.94
5771 6185 2.843113 ACTACAGTAGTACTCCCTCCGT 59.157 50.000 11.84 0.00 37.23 4.69
5772 6186 3.557228 ACTACAGTAGTACTCCCTCCG 57.443 52.381 11.84 0.00 37.23 4.63
5791 6205 1.844687 AACCAGGACGGAGGTACTAC 58.155 55.000 0.00 0.00 41.55 2.73
5797 6211 2.484947 GGCTAATAAACCAGGACGGAGG 60.485 54.545 0.00 0.00 38.63 4.30
5798 6212 2.484947 GGGCTAATAAACCAGGACGGAG 60.485 54.545 0.00 0.00 38.63 4.63
5801 6215 1.476291 GGGGGCTAATAAACCAGGACG 60.476 57.143 0.00 0.00 0.00 4.79
5802 6216 1.850998 AGGGGGCTAATAAACCAGGAC 59.149 52.381 0.00 0.00 0.00 3.85
5804 6218 2.748465 CGAAGGGGGCTAATAAACCAGG 60.748 54.545 0.00 0.00 0.00 4.45
5805 6219 2.092592 ACGAAGGGGGCTAATAAACCAG 60.093 50.000 0.00 0.00 0.00 4.00
5806 6220 1.917568 ACGAAGGGGGCTAATAAACCA 59.082 47.619 0.00 0.00 0.00 3.67
5808 6222 6.095860 ACAAAATACGAAGGGGGCTAATAAAC 59.904 38.462 0.00 0.00 0.00 2.01
5809 6223 6.095720 CACAAAATACGAAGGGGGCTAATAAA 59.904 38.462 0.00 0.00 0.00 1.40
5810 6224 5.591067 CACAAAATACGAAGGGGGCTAATAA 59.409 40.000 0.00 0.00 0.00 1.40
5811 6225 5.127491 CACAAAATACGAAGGGGGCTAATA 58.873 41.667 0.00 0.00 0.00 0.98
5812 6226 3.951680 CACAAAATACGAAGGGGGCTAAT 59.048 43.478 0.00 0.00 0.00 1.73
5814 6228 2.942306 GCACAAAATACGAAGGGGGCTA 60.942 50.000 0.00 0.00 0.00 3.93
5816 6230 0.172578 GCACAAAATACGAAGGGGGC 59.827 55.000 0.00 0.00 0.00 5.80
5817 6231 1.834188 AGCACAAAATACGAAGGGGG 58.166 50.000 0.00 0.00 0.00 5.40
5818 6232 5.576447 ATTTAGCACAAAATACGAAGGGG 57.424 39.130 0.00 0.00 0.00 4.79
5819 6233 7.596995 TCAAAATTTAGCACAAAATACGAAGGG 59.403 33.333 0.00 0.00 0.00 3.95
5820 6234 8.424731 GTCAAAATTTAGCACAAAATACGAAGG 58.575 33.333 0.00 0.00 0.00 3.46
5821 6235 9.180678 AGTCAAAATTTAGCACAAAATACGAAG 57.819 29.630 0.00 0.00 0.00 3.79
5822 6236 9.522804 AAGTCAAAATTTAGCACAAAATACGAA 57.477 25.926 0.00 0.00 0.00 3.85
5823 6237 9.522804 AAAGTCAAAATTTAGCACAAAATACGA 57.477 25.926 0.00 0.00 0.00 3.43
5934 6348 8.977505 CCTTCGTATTTTGTGTCAAATTTTGAT 58.022 29.630 14.54 0.44 42.47 2.57
5935 6349 7.436673 CCCTTCGTATTTTGTGTCAAATTTTGA 59.563 33.333 7.74 7.74 37.33 2.69
5936 6350 7.307101 CCCCTTCGTATTTTGTGTCAAATTTTG 60.307 37.037 2.59 2.59 0.00 2.44
5937 6351 6.704050 CCCCTTCGTATTTTGTGTCAAATTTT 59.296 34.615 0.00 0.00 0.00 1.82
5938 6352 6.041069 TCCCCTTCGTATTTTGTGTCAAATTT 59.959 34.615 0.00 0.00 0.00 1.82
5939 6353 5.536916 TCCCCTTCGTATTTTGTGTCAAATT 59.463 36.000 0.00 0.00 0.00 1.82
5940 6354 5.048294 GTCCCCTTCGTATTTTGTGTCAAAT 60.048 40.000 0.00 0.00 0.00 2.32
5941 6355 4.276431 GTCCCCTTCGTATTTTGTGTCAAA 59.724 41.667 0.00 0.00 0.00 2.69
5942 6356 3.816523 GTCCCCTTCGTATTTTGTGTCAA 59.183 43.478 0.00 0.00 0.00 3.18
5943 6357 3.404899 GTCCCCTTCGTATTTTGTGTCA 58.595 45.455 0.00 0.00 0.00 3.58
5944 6358 2.745821 GGTCCCCTTCGTATTTTGTGTC 59.254 50.000 0.00 0.00 0.00 3.67
5945 6359 2.106857 TGGTCCCCTTCGTATTTTGTGT 59.893 45.455 0.00 0.00 0.00 3.72
5946 6360 2.785562 TGGTCCCCTTCGTATTTTGTG 58.214 47.619 0.00 0.00 0.00 3.33
5947 6361 3.512219 TTGGTCCCCTTCGTATTTTGT 57.488 42.857 0.00 0.00 0.00 2.83
5948 6362 6.327154 GTTTATTGGTCCCCTTCGTATTTTG 58.673 40.000 0.00 0.00 0.00 2.44
5949 6363 5.419788 GGTTTATTGGTCCCCTTCGTATTTT 59.580 40.000 0.00 0.00 0.00 1.82
5950 6364 4.951715 GGTTTATTGGTCCCCTTCGTATTT 59.048 41.667 0.00 0.00 0.00 1.40
5951 6365 4.228895 AGGTTTATTGGTCCCCTTCGTATT 59.771 41.667 0.00 0.00 0.00 1.89
5952 6366 3.784202 AGGTTTATTGGTCCCCTTCGTAT 59.216 43.478 0.00 0.00 0.00 3.06
5953 6367 3.054948 CAGGTTTATTGGTCCCCTTCGTA 60.055 47.826 0.00 0.00 0.00 3.43
5954 6368 1.990327 AGGTTTATTGGTCCCCTTCGT 59.010 47.619 0.00 0.00 0.00 3.85
5955 6369 2.365582 CAGGTTTATTGGTCCCCTTCG 58.634 52.381 0.00 0.00 0.00 3.79
5956 6370 2.310647 TCCAGGTTTATTGGTCCCCTTC 59.689 50.000 0.00 0.00 37.02 3.46
5957 6371 2.042569 GTCCAGGTTTATTGGTCCCCTT 59.957 50.000 0.00 0.00 37.02 3.95
5958 6372 1.639108 GTCCAGGTTTATTGGTCCCCT 59.361 52.381 0.00 0.00 37.02 4.79
5959 6373 1.356398 TGTCCAGGTTTATTGGTCCCC 59.644 52.381 0.00 0.00 37.02 4.81
5960 6374 2.891191 TGTCCAGGTTTATTGGTCCC 57.109 50.000 0.00 0.00 37.02 4.46
5961 6375 5.367945 TCTATGTCCAGGTTTATTGGTCC 57.632 43.478 0.00 0.00 37.02 4.46
5974 6388 9.494271 GCTGAAAATGAGTATTATCTATGTCCA 57.506 33.333 0.00 0.00 0.00 4.02
5975 6389 9.717942 AGCTGAAAATGAGTATTATCTATGTCC 57.282 33.333 0.00 0.00 0.00 4.02
5980 6394 9.770097 CTCCAAGCTGAAAATGAGTATTATCTA 57.230 33.333 0.00 0.00 0.00 1.98
5981 6395 7.718753 CCTCCAAGCTGAAAATGAGTATTATCT 59.281 37.037 0.00 0.00 0.00 1.98
5982 6396 7.500559 ACCTCCAAGCTGAAAATGAGTATTATC 59.499 37.037 0.00 0.00 0.00 1.75
5983 6397 7.349598 ACCTCCAAGCTGAAAATGAGTATTAT 58.650 34.615 0.00 0.00 0.00 1.28
5984 6398 6.721318 ACCTCCAAGCTGAAAATGAGTATTA 58.279 36.000 0.00 0.00 0.00 0.98
5985 6399 5.574188 ACCTCCAAGCTGAAAATGAGTATT 58.426 37.500 0.00 0.00 0.00 1.89
5986 6400 5.184892 ACCTCCAAGCTGAAAATGAGTAT 57.815 39.130 0.00 0.00 0.00 2.12
6034 6448 7.822334 TCCGAGCTGAGAAATAAAATTGTCTTA 59.178 33.333 0.00 0.00 0.00 2.10
6059 6473 5.186996 TGCAGAAGATGAGGTTTTGTTTC 57.813 39.130 0.00 0.00 0.00 2.78
6078 6492 1.339055 CCCGAGACCATTCTTCTTGCA 60.339 52.381 0.00 0.00 29.47 4.08
6091 6505 5.618056 TGTATATCGAATGTACCCGAGAC 57.382 43.478 0.00 6.60 38.25 3.36
6109 6523 8.781951 TCATTTTCCCTCTCTTAATCCTTGTAT 58.218 33.333 0.00 0.00 0.00 2.29
6110 6524 8.047310 GTCATTTTCCCTCTCTTAATCCTTGTA 58.953 37.037 0.00 0.00 0.00 2.41
6128 6542 8.429641 TGGTCTATCCCTAGTTATGTCATTTTC 58.570 37.037 0.00 0.00 34.77 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.