Multiple sequence alignment - TraesCS4B01G244200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G244200 chr4B 100.000 4754 0 0 1 4754 505505496 505500743 0.000000e+00 8780.0
1 TraesCS4B01G244200 chr4B 100.000 2192 0 0 5356 7547 505500141 505497950 0.000000e+00 4048.0
2 TraesCS4B01G244200 chr4B 91.971 548 30 6 3388 3931 648942891 648943428 0.000000e+00 756.0
3 TraesCS4B01G244200 chr4B 99.727 366 1 0 4389 4754 505500141 505499776 0.000000e+00 671.0
4 TraesCS4B01G244200 chr4B 99.727 366 1 0 5356 5721 505501108 505500743 0.000000e+00 671.0
5 TraesCS4B01G244200 chr4B 85.393 267 29 9 1130 1390 165045777 165045515 1.250000e-67 268.0
6 TraesCS4B01G244200 chr4B 93.064 173 9 2 3180 3352 648942727 648942896 4.520000e-62 250.0
7 TraesCS4B01G244200 chr4D 92.123 3504 141 47 1 3445 406207760 406204333 0.000000e+00 4817.0
8 TraesCS4B01G244200 chr4D 93.588 889 30 6 6685 7547 406202316 406201429 0.000000e+00 1301.0
9 TraesCS4B01G244200 chr4D 90.494 547 27 4 3916 4459 406203830 406203306 0.000000e+00 699.0
10 TraesCS4B01G244200 chr4D 91.797 512 18 6 6126 6623 406202831 406202330 0.000000e+00 691.0
11 TraesCS4B01G244200 chr4D 94.486 399 16 3 3490 3887 406204218 406203825 1.800000e-170 610.0
12 TraesCS4B01G244200 chr4D 81.319 182 9 16 5958 6132 406203020 406202857 2.860000e-24 124.0
13 TraesCS4B01G244200 chr4A 90.088 2946 140 69 453 3369 63819885 63817063 0.000000e+00 3683.0
14 TraesCS4B01G244200 chr4A 90.936 2019 90 38 5607 7547 63815914 63813911 0.000000e+00 2628.0
15 TraesCS4B01G244200 chr4A 92.956 724 23 5 3916 4621 63816613 63815900 0.000000e+00 1029.0
16 TraesCS4B01G244200 chr4A 94.011 551 23 3 3388 3934 695668710 695668166 0.000000e+00 826.0
17 TraesCS4B01G244200 chr4A 92.650 449 20 7 3448 3889 63817048 63816606 1.070000e-177 634.0
18 TraesCS4B01G244200 chr4A 90.336 238 8 4 5356 5588 63816127 63815900 1.590000e-76 298.0
19 TraesCS4B01G244200 chr4A 93.567 171 7 3 3180 3350 695668873 695668707 1.260000e-62 252.0
20 TraesCS4B01G244200 chr4A 95.652 115 5 0 4640 4754 63815914 63815800 1.290000e-42 185.0
21 TraesCS4B01G244200 chr6B 93.155 672 34 5 3268 3934 251104598 251105262 0.000000e+00 976.0
22 TraesCS4B01G244200 chr6B 93.843 536 20 5 3180 3711 306014552 306014026 0.000000e+00 795.0
23 TraesCS4B01G244200 chr6B 94.760 229 11 1 3707 3934 306002221 306001993 9.310000e-94 355.0
24 TraesCS4B01G244200 chr6B 82.008 239 30 12 5691 5921 526038949 526039182 2.780000e-44 191.0
25 TraesCS4B01G244200 chr3B 93.627 408 19 3 3180 3587 750434555 750434155 3.010000e-168 603.0
26 TraesCS4B01G244200 chr3B 89.873 237 21 2 4234 4468 580881842 580881607 1.230000e-77 302.0
27 TraesCS4B01G244200 chr3B 81.319 273 28 9 5700 5958 513807363 513807626 4.620000e-47 200.0
28 TraesCS4B01G244200 chr3B 81.369 263 31 13 5700 5955 45518878 45518627 1.660000e-46 198.0
29 TraesCS4B01G244200 chr3B 82.828 99 15 2 4527 4623 278771364 278771462 3.750000e-13 87.9
30 TraesCS4B01G244200 chr7D 90.786 369 30 4 4102 4468 205526959 205526593 2.450000e-134 490.0
31 TraesCS4B01G244200 chr7D 92.647 136 10 0 5700 5835 629085578 629085443 5.970000e-46 196.0
32 TraesCS4B01G244200 chr5D 89.488 371 31 8 4102 4468 219453395 219453029 5.330000e-126 462.0
33 TraesCS4B01G244200 chr5D 95.341 279 8 1 3309 3587 342007011 342006738 8.990000e-119 438.0
34 TraesCS4B01G244200 chr7B 95.699 279 8 1 3309 3587 742872808 742872534 5.370000e-121 446.0
35 TraesCS4B01G244200 chr1D 95.699 279 8 2 3309 3587 164908196 164908470 5.370000e-121 446.0
36 TraesCS4B01G244200 chr1D 84.946 93 13 1 1173 1264 84815557 84815465 8.060000e-15 93.5
37 TraesCS4B01G244200 chr2D 86.757 370 43 5 4102 4468 216881245 216880879 2.540000e-109 407.0
38 TraesCS4B01G244200 chr3D 89.496 238 21 3 4234 4468 294603094 294602858 1.590000e-76 298.0
39 TraesCS4B01G244200 chrUn 80.460 261 45 5 5700 5957 97477309 97477052 2.150000e-45 195.0
40 TraesCS4B01G244200 chrUn 84.783 184 20 7 5700 5877 32327590 32327771 2.160000e-40 178.0
41 TraesCS4B01G244200 chr3A 80.952 273 29 10 5700 5958 513924048 513924311 2.150000e-45 195.0
42 TraesCS4B01G244200 chr6A 79.279 222 38 3 5701 5921 490474256 490474042 1.700000e-31 148.0
43 TraesCS4B01G244200 chr6A 84.211 114 13 5 4513 4623 587378727 587378838 1.040000e-18 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G244200 chr4B 505497950 505505496 7546 True 4499.666667 8780 99.9090 1 7547 3 chr4B.!!$R3 7546
1 TraesCS4B01G244200 chr4B 648942727 648943428 701 False 503.000000 756 92.5175 3180 3931 2 chr4B.!!$F1 751
2 TraesCS4B01G244200 chr4D 406201429 406207760 6331 True 1373.666667 4817 90.6345 1 7547 6 chr4D.!!$R1 7546
3 TraesCS4B01G244200 chr4A 63813911 63819885 5974 True 1409.500000 3683 92.1030 453 7547 6 chr4A.!!$R1 7094
4 TraesCS4B01G244200 chr4A 695668166 695668873 707 True 539.000000 826 93.7890 3180 3934 2 chr4A.!!$R2 754
5 TraesCS4B01G244200 chr6B 251104598 251105262 664 False 976.000000 976 93.1550 3268 3934 1 chr6B.!!$F1 666
6 TraesCS4B01G244200 chr6B 306014026 306014552 526 True 795.000000 795 93.8430 3180 3711 1 chr6B.!!$R2 531

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
263 264 0.381801 GCTAACGGAATGCATGGTGG 59.618 55.0 0.00 0.0 0.00 4.61 F
1738 1786 1.019278 GGAACTTCGATCGGCAAGCA 61.019 55.0 16.41 0.0 0.00 3.91 F
2687 2736 0.034337 CAAATGCAAGCCTGTTGCCT 59.966 50.0 7.24 0.0 44.32 4.75 F
2694 2743 0.106519 AAGCCTGTTGCCTCTGTGTT 60.107 50.0 0.00 0.0 42.71 3.32 F
2788 2837 0.179073 CGGGTCCACCACAGATCATC 60.179 60.0 0.00 0.0 40.22 2.92 F
3943 4123 0.179129 GAAGGGGCATTGCATTCACG 60.179 55.0 11.39 0.0 0.00 4.35 F
4661 4896 0.603975 AGGAGTTCTGTTCTTGCGCC 60.604 55.0 4.18 0.0 0.00 6.53 F
5474 5709 0.108138 GGCTCTGGTAACTGCATCGT 60.108 55.0 0.00 0.0 35.12 3.73 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2074 0.807496 GAAGCATCTCCACCTGCAAC 59.193 55.0 0.00 0.0 40.88 4.17 R
2699 2748 0.258484 TACATGCCATCCCCACAAGG 59.742 55.0 0.00 0.0 0.00 3.61 R
4642 4877 0.603975 GGCGCAAGAACAGAACTCCT 60.604 55.0 10.83 0.0 43.02 3.69 R
4643 4878 0.603975 AGGCGCAAGAACAGAACTCC 60.604 55.0 10.83 0.0 43.02 3.85 R
4644 4879 2.080286 TAGGCGCAAGAACAGAACTC 57.920 50.0 10.83 0.0 43.02 3.01 R
5455 5690 0.108138 ACGATGCAGTTACCAGAGCC 60.108 55.0 0.00 0.0 0.00 4.70 R
5609 5844 0.603975 GGCGCAAGAACAGAACTCCT 60.604 55.0 10.83 0.0 43.02 3.69 R
7308 7618 0.393537 CATCTGTCCCCAGCCTTGAC 60.394 60.0 0.00 0.0 38.66 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 6.598503 ACTTCTATGGATCATGCAAGATTGA 58.401 36.000 5.81 0.00 0.00 2.57
63 64 3.933332 CCTATTCCGTGAGACAAAGTTCC 59.067 47.826 0.00 0.00 0.00 3.62
75 76 3.994392 GACAAAGTTCCTGCTTCGTATGA 59.006 43.478 0.00 0.00 0.00 2.15
76 77 3.997021 ACAAAGTTCCTGCTTCGTATGAG 59.003 43.478 0.00 0.00 0.00 2.90
80 81 4.642429 AGTTCCTGCTTCGTATGAGTTTT 58.358 39.130 0.00 0.00 0.00 2.43
117 118 2.621526 GTTTTTCATCCCCGTGAGTGTT 59.378 45.455 0.00 0.00 0.00 3.32
128 129 0.443869 GTGAGTGTTATGTGCTGGCG 59.556 55.000 0.00 0.00 0.00 5.69
146 147 2.253452 CACTTGCTTGCTGGTCGC 59.747 61.111 0.00 0.00 39.77 5.19
156 157 2.740055 CTGGTCGCAGTGTGAGGC 60.740 66.667 6.63 0.00 0.00 4.70
171 172 1.199615 GAGGCTAGAACCAGGAAGCT 58.800 55.000 0.00 0.00 35.30 3.74
188 189 0.602905 GCTACCGTGTTTGGCTCACT 60.603 55.000 0.00 0.00 34.14 3.41
189 190 1.337447 GCTACCGTGTTTGGCTCACTA 60.337 52.381 0.00 0.00 34.14 2.74
208 209 2.814805 AGCTTGCCCACTGATGTAAT 57.185 45.000 0.00 0.00 0.00 1.89
209 210 2.372264 AGCTTGCCCACTGATGTAATG 58.628 47.619 0.00 0.00 0.00 1.90
233 234 0.820074 TTGTGGCCGTCGATTTGGTT 60.820 50.000 0.00 0.00 0.00 3.67
249 250 1.278127 TGGTTGAGCCCACTAGCTAAC 59.722 52.381 0.00 0.00 45.15 2.34
256 257 1.583054 CCCACTAGCTAACGGAATGC 58.417 55.000 9.26 0.00 0.00 3.56
263 264 0.381801 GCTAACGGAATGCATGGTGG 59.618 55.000 0.00 0.00 0.00 4.61
265 266 2.091541 CTAACGGAATGCATGGTGGTT 58.908 47.619 0.00 5.48 0.00 3.67
284 285 6.889019 TGGTTTTCCACGTCAAAAATAAAC 57.111 33.333 7.61 0.00 46.22 2.01
322 323 3.349927 TCAACAAGCTGATGGAGGAATG 58.650 45.455 0.00 0.00 0.00 2.67
391 398 5.880332 TCAAGTACCAATAGCCTCATGTTTC 59.120 40.000 0.00 0.00 0.00 2.78
395 402 6.891908 AGTACCAATAGCCTCATGTTTCATTT 59.108 34.615 0.00 0.00 0.00 2.32
396 403 5.969423 ACCAATAGCCTCATGTTTCATTTG 58.031 37.500 0.00 0.00 0.00 2.32
397 404 4.807304 CCAATAGCCTCATGTTTCATTTGC 59.193 41.667 0.00 0.00 0.00 3.68
398 405 5.394883 CCAATAGCCTCATGTTTCATTTGCT 60.395 40.000 0.00 0.00 0.00 3.91
399 406 3.863142 AGCCTCATGTTTCATTTGCTC 57.137 42.857 0.00 0.00 0.00 4.26
400 407 3.428532 AGCCTCATGTTTCATTTGCTCT 58.571 40.909 0.00 0.00 0.00 4.09
401 408 3.442977 AGCCTCATGTTTCATTTGCTCTC 59.557 43.478 0.00 0.00 0.00 3.20
540 547 1.213537 CCAAGCTGCCAAATGTCCG 59.786 57.895 0.00 0.00 0.00 4.79
696 724 3.003763 GGAGTCCCGGCTGGTTCT 61.004 66.667 11.58 8.17 34.77 3.01
699 727 3.637273 GTCCCGGCTGGTTCTGGT 61.637 66.667 11.58 0.00 34.77 4.00
700 728 3.636231 TCCCGGCTGGTTCTGGTG 61.636 66.667 11.58 0.00 34.77 4.17
701 729 4.722700 CCCGGCTGGTTCTGGTGG 62.723 72.222 11.58 0.00 0.00 4.61
749 779 3.989817 GCGCAAAGATCCTTTCAAATTGT 59.010 39.130 0.30 0.00 0.00 2.71
994 1031 1.647084 GTTCAAACCAAGCGAGCGT 59.353 52.632 0.00 0.00 0.00 5.07
1447 1495 3.587933 GGCGCGTCAAAACACCCA 61.588 61.111 5.47 0.00 0.00 4.51
1533 1581 2.756760 GGACTGGTGGTTGATCGTACTA 59.243 50.000 0.00 0.00 0.00 1.82
1578 1626 1.341852 GGGGAGGAAGAAGATAGACGC 59.658 57.143 0.00 0.00 0.00 5.19
1738 1786 1.019278 GGAACTTCGATCGGCAAGCA 61.019 55.000 16.41 0.00 0.00 3.91
2043 2092 0.957395 CGTTGCAGGTGGAGATGCTT 60.957 55.000 0.00 0.00 42.98 3.91
2316 2365 0.981183 ATCAACACCCGCAGAAGGTA 59.019 50.000 0.00 0.00 35.24 3.08
2329 2378 5.105756 CCGCAGAAGGTAGGATTCAAATTTT 60.106 40.000 0.00 0.00 0.00 1.82
2371 2420 2.833631 ACTGTTTTAGCCACTACGCT 57.166 45.000 0.00 0.00 43.09 5.07
2445 2494 3.301835 CGAAATCAAGATTAGTGTCCGCG 60.302 47.826 0.00 0.00 0.00 6.46
2452 2501 2.165845 AGATTAGTGTCCGCGCTTAACT 59.834 45.455 5.56 6.48 36.72 2.24
2457 2506 1.132640 GTCCGCGCTTAACTTGCTG 59.867 57.895 5.56 0.00 0.00 4.41
2467 2516 3.621715 GCTTAACTTGCTGGCGTAGTTAT 59.378 43.478 15.52 1.41 35.12 1.89
2471 2520 3.528532 ACTTGCTGGCGTAGTTATTACC 58.471 45.455 0.00 0.00 0.00 2.85
2472 2521 3.055675 ACTTGCTGGCGTAGTTATTACCA 60.056 43.478 0.00 0.00 0.00 3.25
2477 2526 5.511234 CTGGCGTAGTTATTACCAGTACT 57.489 43.478 0.00 0.00 42.42 2.73
2502 2551 3.067106 ACGGAGTGTTGCTTGATTAGTG 58.933 45.455 0.00 0.00 42.51 2.74
2541 2590 2.234414 GTTGACTCGGGTGGGTACAATA 59.766 50.000 0.00 0.00 0.00 1.90
2609 2658 1.003118 TGGGTCCCTTTTGTCTCATCG 59.997 52.381 10.00 0.00 0.00 3.84
2671 2720 4.681074 ATTGATCATGGATGCATGCAAA 57.319 36.364 26.68 16.17 32.87 3.68
2686 2735 1.571215 GCAAATGCAAGCCTGTTGCC 61.571 55.000 7.24 0.00 44.32 4.52
2687 2736 0.034337 CAAATGCAAGCCTGTTGCCT 59.966 50.000 7.24 0.00 44.32 4.75
2688 2737 0.319405 AAATGCAAGCCTGTTGCCTC 59.681 50.000 7.24 0.00 44.32 4.70
2689 2738 0.541296 AATGCAAGCCTGTTGCCTCT 60.541 50.000 7.24 0.00 44.32 3.69
2690 2739 1.248785 ATGCAAGCCTGTTGCCTCTG 61.249 55.000 7.24 0.00 44.32 3.35
2691 2740 1.900498 GCAAGCCTGTTGCCTCTGT 60.900 57.895 0.00 0.00 42.71 3.41
2692 2741 1.954528 CAAGCCTGTTGCCTCTGTG 59.045 57.895 0.00 0.00 42.71 3.66
2693 2742 0.820891 CAAGCCTGTTGCCTCTGTGT 60.821 55.000 0.00 0.00 42.71 3.72
2694 2743 0.106519 AAGCCTGTTGCCTCTGTGTT 60.107 50.000 0.00 0.00 42.71 3.32
2695 2744 0.820891 AGCCTGTTGCCTCTGTGTTG 60.821 55.000 0.00 0.00 42.71 3.33
2696 2745 1.103398 GCCTGTTGCCTCTGTGTTGT 61.103 55.000 0.00 0.00 0.00 3.32
2697 2746 0.664761 CCTGTTGCCTCTGTGTTGTG 59.335 55.000 0.00 0.00 0.00 3.33
2698 2747 0.664761 CTGTTGCCTCTGTGTTGTGG 59.335 55.000 0.00 0.00 0.00 4.17
2699 2748 1.360192 GTTGCCTCTGTGTTGTGGC 59.640 57.895 0.00 0.00 44.25 5.01
2700 2749 1.827789 TTGCCTCTGTGTTGTGGCC 60.828 57.895 0.00 0.00 43.60 5.36
2739 2788 1.119684 AGGGTTTTGCACTGGTTTCC 58.880 50.000 0.00 0.00 0.00 3.13
2788 2837 0.179073 CGGGTCCACCACAGATCATC 60.179 60.000 0.00 0.00 40.22 2.92
2816 2865 0.603707 CATCCATAGATTGGCGCGGT 60.604 55.000 8.83 0.00 46.01 5.68
2969 3019 1.543184 GGATGGGATGATGGGCCAA 59.457 57.895 11.89 0.00 0.00 4.52
2987 3037 3.004315 GCCAATCTTCGTTTCTTCCACAA 59.996 43.478 0.00 0.00 0.00 3.33
3000 3050 5.188327 TCTTCCACAATAGCTCGATACTG 57.812 43.478 0.00 0.00 0.00 2.74
3238 3315 3.044305 GTGCGAGACCTGTGCCAC 61.044 66.667 0.00 0.00 0.00 5.01
3760 3936 4.084013 GGTGCTCATTGTGTGTTACTGTAC 60.084 45.833 0.00 0.00 0.00 2.90
3943 4123 0.179129 GAAGGGGCATTGCATTCACG 60.179 55.000 11.39 0.00 0.00 4.35
3954 4134 2.212652 TGCATTCACGGATCATACAGC 58.787 47.619 0.00 0.00 0.00 4.40
3968 4148 6.430925 GGATCATACAGCTTGTAATTATGGCA 59.569 38.462 0.00 0.00 36.31 4.92
4035 4215 1.547372 GCTGCTGGATTTGGTTGACAT 59.453 47.619 0.00 0.00 0.00 3.06
4040 4220 4.887071 TGCTGGATTTGGTTGACATATACC 59.113 41.667 0.00 0.00 34.93 2.73
4122 4317 1.530720 CATGCTTTGAGTACGTGCACA 59.469 47.619 18.64 2.46 36.44 4.57
4133 4329 3.802685 AGTACGTGCACAGAAGAAAACTC 59.197 43.478 18.64 0.00 0.00 3.01
4451 4647 6.402658 GCTTTGCATCTTCAGTACCTAGAAAC 60.403 42.308 0.00 0.00 0.00 2.78
4523 4758 3.555956 GCATCGTCCTTTACATACTGGTG 59.444 47.826 0.00 0.00 0.00 4.17
4526 4761 2.671396 CGTCCTTTACATACTGGTGTGC 59.329 50.000 0.00 0.00 33.62 4.57
4535 4770 5.023533 ACATACTGGTGTGCTACTAATGG 57.976 43.478 0.00 0.00 0.00 3.16
4568 4803 4.624452 GCATCAACTTTTGGAATTCAGAGC 59.376 41.667 7.93 0.00 0.00 4.09
4578 4813 7.707624 TTTGGAATTCAGAGCAAGATGTATT 57.292 32.000 7.93 0.00 0.00 1.89
4580 4815 5.591472 TGGAATTCAGAGCAAGATGTATTGG 59.409 40.000 7.93 0.00 0.00 3.16
4581 4816 5.506982 GGAATTCAGAGCAAGATGTATTGGC 60.507 44.000 7.93 0.00 0.00 4.52
4584 4819 3.198417 TCAGAGCAAGATGTATTGGCTGA 59.802 43.478 0.00 0.00 0.00 4.26
4585 4820 3.943381 CAGAGCAAGATGTATTGGCTGAA 59.057 43.478 0.00 0.00 0.00 3.02
4586 4821 4.397103 CAGAGCAAGATGTATTGGCTGAAA 59.603 41.667 0.00 0.00 0.00 2.69
4587 4822 4.397417 AGAGCAAGATGTATTGGCTGAAAC 59.603 41.667 0.00 0.00 0.00 2.78
4588 4823 4.081406 AGCAAGATGTATTGGCTGAAACA 58.919 39.130 0.00 0.00 0.00 2.83
4589 4824 4.523943 AGCAAGATGTATTGGCTGAAACAA 59.476 37.500 0.00 0.00 0.00 2.83
4590 4825 5.010922 AGCAAGATGTATTGGCTGAAACAAA 59.989 36.000 0.00 0.00 0.00 2.83
4591 4826 5.695816 GCAAGATGTATTGGCTGAAACAAAA 59.304 36.000 0.00 0.00 0.00 2.44
4604 4839 7.147915 TGGCTGAAACAAAAGAGTACTCATTTT 60.148 33.333 24.44 21.16 29.29 1.82
4617 4852 9.536510 AGAGTACTCATTTTAACTAGGAGTTCT 57.463 33.333 24.44 8.97 39.51 3.01
4618 4853 9.575783 GAGTACTCATTTTAACTAGGAGTTCTG 57.424 37.037 18.20 0.00 39.51 3.02
4619 4854 9.091220 AGTACTCATTTTAACTAGGAGTTCTGT 57.909 33.333 8.76 0.00 39.51 3.41
4620 4855 9.708092 GTACTCATTTTAACTAGGAGTTCTGTT 57.292 33.333 8.76 0.00 39.51 3.16
4621 4856 8.834749 ACTCATTTTAACTAGGAGTTCTGTTC 57.165 34.615 0.00 0.00 39.51 3.18
4622 4857 8.652290 ACTCATTTTAACTAGGAGTTCTGTTCT 58.348 33.333 0.00 0.00 39.51 3.01
4623 4858 9.145865 CTCATTTTAACTAGGAGTTCTGTTCTC 57.854 37.037 0.00 0.00 39.51 2.87
4624 4859 7.813148 TCATTTTAACTAGGAGTTCTGTTCTCG 59.187 37.037 0.00 0.00 39.51 4.04
4625 4860 3.579335 AACTAGGAGTTCTGTTCTCGC 57.421 47.619 0.00 0.00 31.77 5.03
4626 4861 2.515854 ACTAGGAGTTCTGTTCTCGCA 58.484 47.619 0.00 0.00 33.26 5.10
4627 4862 2.891580 ACTAGGAGTTCTGTTCTCGCAA 59.108 45.455 0.00 0.00 33.26 4.85
4628 4863 2.910688 AGGAGTTCTGTTCTCGCAAA 57.089 45.000 0.00 0.00 33.26 3.68
4629 4864 3.194005 AGGAGTTCTGTTCTCGCAAAA 57.806 42.857 0.00 0.00 33.26 2.44
4630 4865 3.541632 AGGAGTTCTGTTCTCGCAAAAA 58.458 40.909 0.00 0.00 33.26 1.94
4657 4892 7.793927 AAAAAGAGTAGGAGTTCTGTTCTTG 57.206 36.000 1.28 0.00 33.08 3.02
4658 4893 4.529109 AGAGTAGGAGTTCTGTTCTTGC 57.471 45.455 0.00 0.00 0.00 4.01
4659 4894 3.057174 AGAGTAGGAGTTCTGTTCTTGCG 60.057 47.826 0.00 0.00 0.00 4.85
4660 4895 1.727335 GTAGGAGTTCTGTTCTTGCGC 59.273 52.381 0.00 0.00 0.00 6.09
4661 4896 0.603975 AGGAGTTCTGTTCTTGCGCC 60.604 55.000 4.18 0.00 0.00 6.53
4662 4897 0.603975 GGAGTTCTGTTCTTGCGCCT 60.604 55.000 4.18 0.00 0.00 5.52
4663 4898 1.337823 GGAGTTCTGTTCTTGCGCCTA 60.338 52.381 4.18 0.00 0.00 3.93
4664 4899 2.413837 GAGTTCTGTTCTTGCGCCTAA 58.586 47.619 4.18 0.00 0.00 2.69
4665 4900 2.806244 GAGTTCTGTTCTTGCGCCTAAA 59.194 45.455 4.18 0.00 0.00 1.85
4666 4901 2.808543 AGTTCTGTTCTTGCGCCTAAAG 59.191 45.455 4.18 1.51 0.00 1.85
4667 4902 2.806244 GTTCTGTTCTTGCGCCTAAAGA 59.194 45.455 4.18 4.48 31.85 2.52
4668 4903 3.334583 TCTGTTCTTGCGCCTAAAGAT 57.665 42.857 4.18 0.00 33.79 2.40
4669 4904 3.674997 TCTGTTCTTGCGCCTAAAGATT 58.325 40.909 4.18 0.00 33.79 2.40
4670 4905 4.827692 TCTGTTCTTGCGCCTAAAGATTA 58.172 39.130 4.18 0.00 33.79 1.75
4671 4906 4.630069 TCTGTTCTTGCGCCTAAAGATTAC 59.370 41.667 4.18 4.48 33.79 1.89
4672 4907 4.320023 TGTTCTTGCGCCTAAAGATTACA 58.680 39.130 4.18 7.14 33.79 2.41
4673 4908 4.757657 TGTTCTTGCGCCTAAAGATTACAA 59.242 37.500 4.18 0.00 33.79 2.41
4674 4909 4.939509 TCTTGCGCCTAAAGATTACAAC 57.060 40.909 4.18 0.00 0.00 3.32
4675 4910 3.687698 TCTTGCGCCTAAAGATTACAACC 59.312 43.478 4.18 0.00 0.00 3.77
4676 4911 3.343941 TGCGCCTAAAGATTACAACCT 57.656 42.857 4.18 0.00 0.00 3.50
4677 4912 3.681593 TGCGCCTAAAGATTACAACCTT 58.318 40.909 4.18 0.00 0.00 3.50
4678 4913 3.438781 TGCGCCTAAAGATTACAACCTTG 59.561 43.478 4.18 0.00 0.00 3.61
4679 4914 3.687698 GCGCCTAAAGATTACAACCTTGA 59.312 43.478 0.00 0.00 0.00 3.02
4680 4915 4.335594 GCGCCTAAAGATTACAACCTTGAT 59.664 41.667 0.00 0.00 0.00 2.57
4681 4916 5.163652 GCGCCTAAAGATTACAACCTTGATT 60.164 40.000 0.00 0.00 0.00 2.57
4682 4917 6.625081 GCGCCTAAAGATTACAACCTTGATTT 60.625 38.462 0.00 0.00 0.00 2.17
4683 4918 6.967199 CGCCTAAAGATTACAACCTTGATTTC 59.033 38.462 0.00 0.00 0.00 2.17
4684 4919 7.148239 CGCCTAAAGATTACAACCTTGATTTCT 60.148 37.037 0.00 0.00 0.00 2.52
4685 4920 8.523658 GCCTAAAGATTACAACCTTGATTTCTT 58.476 33.333 0.00 0.00 0.00 2.52
4694 4929 9.706691 TTACAACCTTGATTTCTTACTCTACAG 57.293 33.333 0.00 0.00 0.00 2.74
4695 4930 7.736893 ACAACCTTGATTTCTTACTCTACAGT 58.263 34.615 0.00 0.00 36.55 3.55
4696 4931 8.867097 ACAACCTTGATTTCTTACTCTACAGTA 58.133 33.333 0.00 0.00 33.62 2.74
4697 4932 9.706691 CAACCTTGATTTCTTACTCTACAGTAA 57.293 33.333 0.00 0.00 41.94 2.24
4698 4933 9.708092 AACCTTGATTTCTTACTCTACAGTAAC 57.292 33.333 0.00 0.00 39.74 2.50
4699 4934 9.091220 ACCTTGATTTCTTACTCTACAGTAACT 57.909 33.333 0.00 0.00 39.74 2.24
4700 4935 9.930693 CCTTGATTTCTTACTCTACAGTAACTT 57.069 33.333 0.00 0.00 39.74 2.66
4706 4941 9.796180 TTTCTTACTCTACAGTAACTTCTCTCT 57.204 33.333 0.00 0.00 39.74 3.10
4707 4942 8.780846 TCTTACTCTACAGTAACTTCTCTCTG 57.219 38.462 0.00 0.00 39.74 3.35
4708 4943 8.595421 TCTTACTCTACAGTAACTTCTCTCTGA 58.405 37.037 0.00 0.00 39.74 3.27
4709 4944 9.221933 CTTACTCTACAGTAACTTCTCTCTGAA 57.778 37.037 0.00 0.00 39.74 3.02
4710 4945 9.570468 TTACTCTACAGTAACTTCTCTCTGAAA 57.430 33.333 0.00 0.00 39.74 2.69
4711 4946 8.466617 ACTCTACAGTAACTTCTCTCTGAAAA 57.533 34.615 0.00 0.00 33.79 2.29
4712 4947 8.354426 ACTCTACAGTAACTTCTCTCTGAAAAC 58.646 37.037 0.00 0.00 33.79 2.43
4713 4948 8.234136 TCTACAGTAACTTCTCTCTGAAAACA 57.766 34.615 0.00 0.00 33.79 2.83
4714 4949 8.692710 TCTACAGTAACTTCTCTCTGAAAACAA 58.307 33.333 0.00 0.00 33.79 2.83
4715 4950 9.314321 CTACAGTAACTTCTCTCTGAAAACAAA 57.686 33.333 0.00 0.00 33.79 2.83
4716 4951 8.561738 ACAGTAACTTCTCTCTGAAAACAAAA 57.438 30.769 0.00 0.00 33.79 2.44
4717 4952 9.178758 ACAGTAACTTCTCTCTGAAAACAAAAT 57.821 29.630 0.00 0.00 33.79 1.82
4722 4957 8.964476 ACTTCTCTCTGAAAACAAAATAGTGA 57.036 30.769 0.00 0.00 33.79 3.41
4723 4958 9.396022 ACTTCTCTCTGAAAACAAAATAGTGAA 57.604 29.630 0.00 0.00 33.79 3.18
4726 4961 9.342308 TCTCTCTGAAAACAAAATAGTGAATGT 57.658 29.630 0.00 0.00 0.00 2.71
4727 4962 9.390795 CTCTCTGAAAACAAAATAGTGAATGTG 57.609 33.333 0.00 0.00 0.00 3.21
4728 4963 8.902806 TCTCTGAAAACAAAATAGTGAATGTGT 58.097 29.630 0.00 0.00 0.00 3.72
4729 4964 9.173939 CTCTGAAAACAAAATAGTGAATGTGTC 57.826 33.333 0.00 0.00 0.00 3.67
4730 4965 8.681806 TCTGAAAACAAAATAGTGAATGTGTCA 58.318 29.630 0.00 0.00 0.00 3.58
4731 4966 8.854979 TGAAAACAAAATAGTGAATGTGTCAG 57.145 30.769 0.00 0.00 36.74 3.51
4732 4967 8.681806 TGAAAACAAAATAGTGAATGTGTCAGA 58.318 29.630 0.00 0.00 36.74 3.27
4733 4968 9.683069 GAAAACAAAATAGTGAATGTGTCAGAT 57.317 29.630 0.00 0.00 36.74 2.90
4734 4969 9.467258 AAAACAAAATAGTGAATGTGTCAGATG 57.533 29.630 0.00 0.00 36.74 2.90
4735 4970 7.149569 ACAAAATAGTGAATGTGTCAGATGG 57.850 36.000 0.00 0.00 36.74 3.51
4736 4971 6.716628 ACAAAATAGTGAATGTGTCAGATGGT 59.283 34.615 0.00 0.00 36.74 3.55
4737 4972 7.231317 ACAAAATAGTGAATGTGTCAGATGGTT 59.769 33.333 0.00 0.00 36.74 3.67
4738 4973 7.765695 AAATAGTGAATGTGTCAGATGGTTT 57.234 32.000 0.00 0.00 36.74 3.27
4739 4974 7.765695 AATAGTGAATGTGTCAGATGGTTTT 57.234 32.000 0.00 0.00 36.74 2.43
4740 4975 5.695851 AGTGAATGTGTCAGATGGTTTTC 57.304 39.130 0.00 0.00 36.74 2.29
4741 4976 5.132502 AGTGAATGTGTCAGATGGTTTTCA 58.867 37.500 0.00 0.00 36.74 2.69
4742 4977 5.009010 AGTGAATGTGTCAGATGGTTTTCAC 59.991 40.000 5.63 5.63 41.07 3.18
4743 4978 5.009010 GTGAATGTGTCAGATGGTTTTCACT 59.991 40.000 6.28 0.00 38.91 3.41
4744 4979 5.593909 TGAATGTGTCAGATGGTTTTCACTT 59.406 36.000 0.00 0.00 0.00 3.16
4745 4980 6.096705 TGAATGTGTCAGATGGTTTTCACTTT 59.903 34.615 0.00 0.00 0.00 2.66
4746 4981 5.499139 TGTGTCAGATGGTTTTCACTTTC 57.501 39.130 0.00 0.00 0.00 2.62
4747 4982 4.946772 TGTGTCAGATGGTTTTCACTTTCA 59.053 37.500 0.00 0.00 0.00 2.69
4748 4983 5.066375 TGTGTCAGATGGTTTTCACTTTCAG 59.934 40.000 0.00 0.00 0.00 3.02
4749 4984 5.066505 GTGTCAGATGGTTTTCACTTTCAGT 59.933 40.000 0.00 0.00 0.00 3.41
5376 5611 4.021102 TGGTTCCTTGAATTCTGAGGTC 57.979 45.455 20.69 16.21 32.33 3.85
5377 5612 3.394274 TGGTTCCTTGAATTCTGAGGTCA 59.606 43.478 20.69 16.13 32.33 4.02
5378 5613 4.006319 GGTTCCTTGAATTCTGAGGTCAG 58.994 47.826 20.69 0.10 45.08 3.51
5379 5614 4.505742 GGTTCCTTGAATTCTGAGGTCAGT 60.506 45.833 20.69 0.00 44.12 3.41
5380 5615 5.280011 GGTTCCTTGAATTCTGAGGTCAGTA 60.280 44.000 20.69 0.00 44.12 2.74
5381 5616 5.667539 TCCTTGAATTCTGAGGTCAGTAG 57.332 43.478 20.69 2.60 44.12 2.57
5382 5617 4.081420 TCCTTGAATTCTGAGGTCAGTAGC 60.081 45.833 20.69 0.00 44.12 3.58
5383 5618 3.895232 TGAATTCTGAGGTCAGTAGCC 57.105 47.619 7.05 0.00 44.12 3.93
5384 5619 3.445008 TGAATTCTGAGGTCAGTAGCCT 58.555 45.455 7.05 0.00 44.12 4.58
5394 5629 5.474825 GAGGTCAGTAGCCTCTAATTATGC 58.525 45.833 4.26 0.00 46.71 3.14
5395 5630 5.151454 AGGTCAGTAGCCTCTAATTATGCT 58.849 41.667 8.70 8.70 37.84 3.79
5396 5631 5.604650 AGGTCAGTAGCCTCTAATTATGCTT 59.395 40.000 8.90 0.00 35.34 3.91
5397 5632 6.100424 AGGTCAGTAGCCTCTAATTATGCTTT 59.900 38.462 8.90 0.00 35.34 3.51
5398 5633 6.203723 GGTCAGTAGCCTCTAATTATGCTTTG 59.796 42.308 8.90 8.53 35.34 2.77
5399 5634 5.760253 TCAGTAGCCTCTAATTATGCTTTGC 59.240 40.000 8.90 0.00 35.34 3.68
5400 5635 5.528690 CAGTAGCCTCTAATTATGCTTTGCA 59.471 40.000 8.90 0.00 44.86 4.08
5412 5647 3.423539 TGCTTTGCATCTTCAGTACCT 57.576 42.857 0.00 0.00 31.71 3.08
5413 5648 4.551702 TGCTTTGCATCTTCAGTACCTA 57.448 40.909 0.00 0.00 31.71 3.08
5414 5649 4.507710 TGCTTTGCATCTTCAGTACCTAG 58.492 43.478 0.00 0.00 31.71 3.02
5415 5650 4.222810 TGCTTTGCATCTTCAGTACCTAGA 59.777 41.667 0.00 0.00 31.71 2.43
5416 5651 5.178797 GCTTTGCATCTTCAGTACCTAGAA 58.821 41.667 0.00 0.00 0.00 2.10
5417 5652 5.643777 GCTTTGCATCTTCAGTACCTAGAAA 59.356 40.000 0.00 0.00 0.00 2.52
5418 5653 6.402658 GCTTTGCATCTTCAGTACCTAGAAAC 60.403 42.308 0.00 0.00 0.00 2.78
5419 5654 4.744570 TGCATCTTCAGTACCTAGAAACG 58.255 43.478 0.00 0.00 0.00 3.60
5420 5655 3.552294 GCATCTTCAGTACCTAGAAACGC 59.448 47.826 0.00 0.00 0.00 4.84
5421 5656 4.678309 GCATCTTCAGTACCTAGAAACGCT 60.678 45.833 0.00 0.00 0.00 5.07
5422 5657 5.411781 CATCTTCAGTACCTAGAAACGCTT 58.588 41.667 0.00 0.00 0.00 4.68
5423 5658 5.056894 TCTTCAGTACCTAGAAACGCTTC 57.943 43.478 0.00 0.00 0.00 3.86
5424 5659 4.765856 TCTTCAGTACCTAGAAACGCTTCT 59.234 41.667 6.30 6.30 44.37 2.85
5425 5660 5.243283 TCTTCAGTACCTAGAAACGCTTCTT 59.757 40.000 6.36 0.00 42.17 2.52
5426 5661 4.806330 TCAGTACCTAGAAACGCTTCTTG 58.194 43.478 6.36 4.72 42.17 3.02
5429 5664 2.474410 CCTAGAAACGCTTCTTGGGT 57.526 50.000 17.91 0.00 45.56 4.51
5438 5673 4.301637 ACGCTTCTTGGGTTTACAAAAG 57.698 40.909 0.00 0.00 38.82 2.27
5439 5674 3.697542 ACGCTTCTTGGGTTTACAAAAGT 59.302 39.130 0.00 0.00 38.82 2.66
5440 5675 4.883006 ACGCTTCTTGGGTTTACAAAAGTA 59.117 37.500 0.00 0.00 38.82 2.24
5441 5676 5.357596 ACGCTTCTTGGGTTTACAAAAGTAA 59.642 36.000 0.00 0.00 38.82 2.24
5442 5677 6.040054 ACGCTTCTTGGGTTTACAAAAGTAAT 59.960 34.615 0.00 0.00 38.82 1.89
5443 5678 6.921307 CGCTTCTTGGGTTTACAAAAGTAATT 59.079 34.615 0.00 0.00 0.00 1.40
5444 5679 7.436970 CGCTTCTTGGGTTTACAAAAGTAATTT 59.563 33.333 0.00 0.00 0.00 1.82
5445 5680 9.104965 GCTTCTTGGGTTTACAAAAGTAATTTT 57.895 29.630 0.00 0.00 0.00 1.82
5457 5692 8.642908 ACAAAAGTAATTTTAGTTGTTGAGGC 57.357 30.769 0.00 0.00 0.00 4.70
5458 5693 8.474831 ACAAAAGTAATTTTAGTTGTTGAGGCT 58.525 29.630 0.00 0.00 0.00 4.58
5459 5694 8.968242 CAAAAGTAATTTTAGTTGTTGAGGCTC 58.032 33.333 7.79 7.79 0.00 4.70
5460 5695 8.465273 AAAGTAATTTTAGTTGTTGAGGCTCT 57.535 30.769 16.72 0.00 0.00 4.09
5461 5696 7.440523 AGTAATTTTAGTTGTTGAGGCTCTG 57.559 36.000 16.72 0.00 0.00 3.35
5462 5697 5.712152 AATTTTAGTTGTTGAGGCTCTGG 57.288 39.130 16.72 0.00 0.00 3.86
5463 5698 3.857157 TTTAGTTGTTGAGGCTCTGGT 57.143 42.857 16.72 0.00 0.00 4.00
5464 5699 4.967084 TTTAGTTGTTGAGGCTCTGGTA 57.033 40.909 16.72 0.00 0.00 3.25
5465 5700 4.967084 TTAGTTGTTGAGGCTCTGGTAA 57.033 40.909 16.72 0.00 0.00 2.85
5466 5701 3.127425 AGTTGTTGAGGCTCTGGTAAC 57.873 47.619 16.72 11.84 0.00 2.50
5467 5702 2.706190 AGTTGTTGAGGCTCTGGTAACT 59.294 45.455 16.72 16.18 37.61 2.24
5468 5703 2.808543 GTTGTTGAGGCTCTGGTAACTG 59.191 50.000 16.72 0.00 37.61 3.16
5469 5704 1.270839 TGTTGAGGCTCTGGTAACTGC 60.271 52.381 16.72 0.00 35.12 4.40
5470 5705 1.055849 TTGAGGCTCTGGTAACTGCA 58.944 50.000 16.72 0.00 35.12 4.41
5471 5706 1.279496 TGAGGCTCTGGTAACTGCAT 58.721 50.000 16.72 0.00 35.12 3.96
5472 5707 1.208052 TGAGGCTCTGGTAACTGCATC 59.792 52.381 16.72 0.00 38.50 3.91
5473 5708 0.176680 AGGCTCTGGTAACTGCATCG 59.823 55.000 0.00 0.00 35.12 3.84
5474 5709 0.108138 GGCTCTGGTAACTGCATCGT 60.108 55.000 0.00 0.00 35.12 3.73
5475 5710 1.281899 GCTCTGGTAACTGCATCGTC 58.718 55.000 0.00 0.00 35.12 4.20
5476 5711 1.927895 CTCTGGTAACTGCATCGTCC 58.072 55.000 0.00 0.00 35.12 4.79
5477 5712 1.478510 CTCTGGTAACTGCATCGTCCT 59.521 52.381 0.00 0.00 35.12 3.85
5478 5713 1.899814 TCTGGTAACTGCATCGTCCTT 59.100 47.619 0.00 0.00 35.12 3.36
5479 5714 2.301870 TCTGGTAACTGCATCGTCCTTT 59.698 45.455 0.00 0.00 35.12 3.11
5480 5715 3.512329 TCTGGTAACTGCATCGTCCTTTA 59.488 43.478 0.00 0.00 35.12 1.85
5481 5716 3.592059 TGGTAACTGCATCGTCCTTTAC 58.408 45.455 0.00 0.00 37.61 2.01
5482 5717 3.007074 TGGTAACTGCATCGTCCTTTACA 59.993 43.478 0.00 0.00 37.61 2.41
5483 5718 4.189231 GGTAACTGCATCGTCCTTTACAT 58.811 43.478 0.00 0.00 0.00 2.29
5484 5719 5.105269 TGGTAACTGCATCGTCCTTTACATA 60.105 40.000 0.00 0.00 37.61 2.29
5485 5720 5.233689 GGTAACTGCATCGTCCTTTACATAC 59.766 44.000 0.00 0.00 0.00 2.39
5486 5721 4.737855 ACTGCATCGTCCTTTACATACT 57.262 40.909 0.00 0.00 0.00 2.12
5487 5722 4.433615 ACTGCATCGTCCTTTACATACTG 58.566 43.478 0.00 0.00 0.00 2.74
5488 5723 3.792401 TGCATCGTCCTTTACATACTGG 58.208 45.455 0.00 0.00 0.00 4.00
5489 5724 3.196901 TGCATCGTCCTTTACATACTGGT 59.803 43.478 0.00 0.00 0.00 4.00
5490 5725 3.555956 GCATCGTCCTTTACATACTGGTG 59.444 47.826 0.00 0.00 0.00 4.17
5491 5726 4.755411 CATCGTCCTTTACATACTGGTGT 58.245 43.478 0.00 0.00 36.13 4.16
5492 5727 4.182693 TCGTCCTTTACATACTGGTGTG 57.817 45.455 0.00 0.00 33.62 3.82
5493 5728 2.671396 CGTCCTTTACATACTGGTGTGC 59.329 50.000 0.00 0.00 33.62 4.57
5494 5729 3.616560 CGTCCTTTACATACTGGTGTGCT 60.617 47.826 0.00 0.00 33.62 4.40
5495 5730 4.381185 CGTCCTTTACATACTGGTGTGCTA 60.381 45.833 0.00 0.00 33.62 3.49
5496 5731 4.868734 GTCCTTTACATACTGGTGTGCTAC 59.131 45.833 0.00 0.00 33.62 3.58
5497 5732 4.775780 TCCTTTACATACTGGTGTGCTACT 59.224 41.667 0.00 0.00 33.62 2.57
5498 5733 5.953548 TCCTTTACATACTGGTGTGCTACTA 59.046 40.000 0.00 0.00 33.62 1.82
5499 5734 6.438108 TCCTTTACATACTGGTGTGCTACTAA 59.562 38.462 0.00 0.00 33.62 2.24
5500 5735 7.125204 TCCTTTACATACTGGTGTGCTACTAAT 59.875 37.037 0.00 0.00 33.62 1.73
5501 5736 7.224753 CCTTTACATACTGGTGTGCTACTAATG 59.775 40.741 0.00 0.00 33.62 1.90
5502 5737 5.023533 ACATACTGGTGTGCTACTAATGG 57.976 43.478 0.00 0.00 0.00 3.16
5503 5738 2.403252 ACTGGTGTGCTACTAATGGC 57.597 50.000 0.00 0.00 0.00 4.40
5504 5739 1.628340 ACTGGTGTGCTACTAATGGCA 59.372 47.619 0.00 0.00 40.52 4.92
5511 5746 3.880047 TGCTACTAATGGCACTTACGT 57.120 42.857 0.00 0.00 37.40 3.57
5512 5747 3.517602 TGCTACTAATGGCACTTACGTG 58.482 45.455 0.00 0.00 37.40 4.49
5525 5760 3.974401 CACTTACGTGCATCAACTTTTGG 59.026 43.478 0.00 0.00 33.82 3.28
5526 5761 3.880490 ACTTACGTGCATCAACTTTTGGA 59.120 39.130 0.00 0.00 0.00 3.53
5527 5762 4.336993 ACTTACGTGCATCAACTTTTGGAA 59.663 37.500 0.00 0.00 0.00 3.53
5528 5763 5.009610 ACTTACGTGCATCAACTTTTGGAAT 59.990 36.000 0.00 0.00 0.00 3.01
5529 5764 4.320608 ACGTGCATCAACTTTTGGAATT 57.679 36.364 0.00 0.00 0.00 2.17
5530 5765 4.298332 ACGTGCATCAACTTTTGGAATTC 58.702 39.130 0.00 0.00 0.00 2.17
5531 5766 4.202101 ACGTGCATCAACTTTTGGAATTCA 60.202 37.500 7.93 0.00 0.00 2.57
5532 5767 4.383649 CGTGCATCAACTTTTGGAATTCAG 59.616 41.667 7.93 0.00 0.00 3.02
5533 5768 5.531634 GTGCATCAACTTTTGGAATTCAGA 58.468 37.500 7.93 0.00 0.00 3.27
5534 5769 5.632347 GTGCATCAACTTTTGGAATTCAGAG 59.368 40.000 7.93 1.84 0.00 3.35
5535 5770 4.624452 GCATCAACTTTTGGAATTCAGAGC 59.376 41.667 7.93 0.00 0.00 4.09
5536 5771 5.775686 CATCAACTTTTGGAATTCAGAGCA 58.224 37.500 7.93 0.00 0.00 4.26
5537 5772 5.850557 TCAACTTTTGGAATTCAGAGCAA 57.149 34.783 7.93 0.00 0.00 3.91
5538 5773 5.835257 TCAACTTTTGGAATTCAGAGCAAG 58.165 37.500 7.93 4.49 0.00 4.01
5539 5774 5.593909 TCAACTTTTGGAATTCAGAGCAAGA 59.406 36.000 7.93 0.00 0.00 3.02
5540 5775 6.266103 TCAACTTTTGGAATTCAGAGCAAGAT 59.734 34.615 7.93 0.00 0.00 2.40
5541 5776 6.022163 ACTTTTGGAATTCAGAGCAAGATG 57.978 37.500 7.93 0.30 0.00 2.90
5542 5777 5.537674 ACTTTTGGAATTCAGAGCAAGATGT 59.462 36.000 7.93 0.82 0.00 3.06
5543 5778 6.716628 ACTTTTGGAATTCAGAGCAAGATGTA 59.283 34.615 7.93 0.00 0.00 2.29
5544 5779 7.395489 ACTTTTGGAATTCAGAGCAAGATGTAT 59.605 33.333 7.93 0.00 0.00 2.29
5545 5780 7.707624 TTTGGAATTCAGAGCAAGATGTATT 57.292 32.000 7.93 0.00 0.00 1.89
5546 5781 7.707624 TTGGAATTCAGAGCAAGATGTATTT 57.292 32.000 7.93 0.00 0.00 1.40
5571 5806 7.771183 TGCTGAAACAAAAGAGTACTCATTTT 58.229 30.769 24.44 21.16 29.29 1.82
5590 5825 9.145865 CTCATTTTAACTAGGAGTTCTGTTCTC 57.854 37.037 0.00 0.00 39.51 2.87
5591 5826 7.813148 TCATTTTAACTAGGAGTTCTGTTCTCG 59.187 37.037 0.00 0.00 39.51 4.04
5592 5827 3.579335 AACTAGGAGTTCTGTTCTCGC 57.421 47.619 0.00 0.00 31.77 5.03
5593 5828 2.515854 ACTAGGAGTTCTGTTCTCGCA 58.484 47.619 0.00 0.00 33.26 5.10
5594 5829 2.891580 ACTAGGAGTTCTGTTCTCGCAA 59.108 45.455 0.00 0.00 33.26 4.85
5595 5830 2.910688 AGGAGTTCTGTTCTCGCAAA 57.089 45.000 0.00 0.00 33.26 3.68
5596 5831 3.194005 AGGAGTTCTGTTCTCGCAAAA 57.806 42.857 0.00 0.00 33.26 2.44
5597 5832 3.541632 AGGAGTTCTGTTCTCGCAAAAA 58.458 40.909 0.00 0.00 33.26 1.94
5663 5898 8.867097 ACAACCTTGATTTCTTACTCTACAGTA 58.133 33.333 0.00 0.00 33.62 2.74
5761 5996 7.752239 ACTGAATTTCATAAATTTCAGCAGTCG 59.248 33.333 11.52 0.00 46.80 4.18
5782 6017 5.963586 GTCGCTGAAATATTTAACTTTCGGG 59.036 40.000 0.00 9.14 37.92 5.14
5785 6020 6.096695 GCTGAAATATTTAACTTTCGGGCAA 58.903 36.000 0.00 0.00 37.92 4.52
5804 6039 6.455913 CGGGCAAAATATTTCAGCAATTTCAG 60.456 38.462 20.51 6.36 0.00 3.02
5814 6049 7.744087 TTTCAGCAATTTCAGTAGTACACAT 57.256 32.000 2.52 0.00 0.00 3.21
5819 6054 7.907045 CAGCAATTTCAGTAGTACACATGAATC 59.093 37.037 0.00 0.00 32.13 2.52
5823 6058 6.605471 TTCAGTAGTACACATGAATCCAGT 57.395 37.500 0.00 0.00 0.00 4.00
5824 6059 6.605471 TCAGTAGTACACATGAATCCAGTT 57.395 37.500 0.00 0.00 0.00 3.16
5892 6127 2.381665 TTTGACCGAAACGCAAGCCG 62.382 55.000 0.00 0.00 45.62 5.52
5898 6133 1.529010 CCGAAACGCAAGCCGAAATAG 60.529 52.381 0.00 0.00 45.62 1.73
5930 6165 2.293122 CTGAATTTCGGTTGGTGCTGAA 59.707 45.455 0.00 0.00 32.46 3.02
5934 6170 2.791383 TTCGGTTGGTGCTGAATTTG 57.209 45.000 0.00 0.00 0.00 2.32
5936 6172 2.028130 TCGGTTGGTGCTGAATTTGTT 58.972 42.857 0.00 0.00 0.00 2.83
6020 6262 3.790123 GCAAGTTCAGACACACTGCTTTC 60.790 47.826 0.00 0.00 45.38 2.62
6051 6293 2.874014 TGGAATGGACTGCATGTTCAA 58.126 42.857 2.03 0.00 37.77 2.69
6060 6302 0.609957 TGCATGTTCAAGGCTCTGGG 60.610 55.000 0.00 0.00 36.25 4.45
6061 6303 0.322816 GCATGTTCAAGGCTCTGGGA 60.323 55.000 0.00 0.00 31.20 4.37
6079 6321 7.316393 TCTGGGAAAATCTCTAGTTTCAGAA 57.684 36.000 6.05 0.00 40.58 3.02
6126 6368 3.118075 TCAGAATGAGTTGAACACACCCA 60.118 43.478 0.00 0.00 42.56 4.51
6137 6410 3.005684 TGAACACACCCATTTTCAGATGC 59.994 43.478 0.00 0.00 0.00 3.91
6141 6414 3.446161 CACACCCATTTTCAGATGCTCAT 59.554 43.478 0.00 0.00 0.00 2.90
6176 6457 9.552114 CAGTGATGTTGTTATCTGAAGAAAATC 57.448 33.333 0.00 0.00 0.00 2.17
6712 7007 3.074094 AGTCAGGTCTGTAGTGGTGAGTA 59.926 47.826 0.00 0.00 0.00 2.59
6863 7160 1.406069 GCTTCTTCCAAGATCTGGCGA 60.406 52.381 0.00 0.00 45.98 5.54
7317 7627 3.414700 GCCGTCGTGTCAAGGCTG 61.415 66.667 0.00 0.00 45.67 4.85
7322 7632 2.358737 CGTGTCAAGGCTGGGGAC 60.359 66.667 7.14 7.14 0.00 4.46
7336 7649 2.660064 GGGACAGATGTGGAGCGGT 61.660 63.158 0.00 0.00 0.00 5.68
7338 7651 1.591703 GACAGATGTGGAGCGGTGA 59.408 57.895 0.00 0.00 0.00 4.02
7440 7773 3.887352 ACACGAGAGGATAAGTAGCTCA 58.113 45.455 0.00 0.00 0.00 4.26
7441 7774 4.270834 ACACGAGAGGATAAGTAGCTCAA 58.729 43.478 0.00 0.00 0.00 3.02
7478 7811 3.041946 AGAAGGGAAGACAGTGACAACT 58.958 45.455 0.00 0.00 36.98 3.16
7480 7813 4.282195 AGAAGGGAAGACAGTGACAACTAG 59.718 45.833 0.00 0.00 33.79 2.57
7482 7815 2.613223 GGGAAGACAGTGACAACTAGGC 60.613 54.545 0.00 0.00 33.79 3.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 5.311265 GTCCTCAATCTTGCATGATCCATA 58.689 41.667 14.85 1.88 0.00 2.74
18 19 4.142790 GTCCTCAATCTTGCATGATCCAT 58.857 43.478 14.85 0.00 0.00 3.41
19 20 3.548770 GTCCTCAATCTTGCATGATCCA 58.451 45.455 14.85 4.77 0.00 3.41
36 37 1.006758 TGTCTCACGGAATAGGGTCCT 59.993 52.381 0.00 0.00 35.31 3.85
63 64 7.295952 ACTCAATAAAACTCATACGAAGCAG 57.704 36.000 0.00 0.00 0.00 4.24
80 81 8.573035 GGATGAAAAACAACCTTGTACTCAATA 58.427 33.333 0.00 0.00 41.31 1.90
128 129 2.253452 CGACCAGCAAGCAAGTGC 59.747 61.111 0.00 0.00 45.28 4.40
146 147 1.066573 CCTGGTTCTAGCCTCACACTG 60.067 57.143 0.00 0.00 0.00 3.66
152 153 1.199615 AGCTTCCTGGTTCTAGCCTC 58.800 55.000 0.00 0.00 34.19 4.70
156 157 2.100989 ACGGTAGCTTCCTGGTTCTAG 58.899 52.381 7.87 0.00 0.00 2.43
171 172 1.337447 GCTAGTGAGCCAAACACGGTA 60.337 52.381 0.00 0.00 43.49 4.02
188 189 3.544684 CATTACATCAGTGGGCAAGCTA 58.455 45.455 0.00 0.00 0.00 3.32
189 190 2.372264 CATTACATCAGTGGGCAAGCT 58.628 47.619 0.00 0.00 0.00 3.74
198 199 3.420893 CCACAACACCCATTACATCAGT 58.579 45.455 0.00 0.00 0.00 3.41
208 209 4.920112 CGACGGCCACAACACCCA 62.920 66.667 2.24 0.00 0.00 4.51
209 210 3.894547 ATCGACGGCCACAACACCC 62.895 63.158 2.24 0.00 0.00 4.61
233 234 0.323999 TCCGTTAGCTAGTGGGCTCA 60.324 55.000 12.04 0.00 42.97 4.26
249 250 1.404047 GGAAAACCACCATGCATTCCG 60.404 52.381 0.00 0.00 0.00 4.30
256 257 1.313772 TGACGTGGAAAACCACCATG 58.686 50.000 12.78 0.00 46.31 3.66
263 264 9.762062 ATTTTGTTTATTTTTGACGTGGAAAAC 57.238 25.926 0.00 0.00 0.00 2.43
265 266 8.936864 ACATTTTGTTTATTTTTGACGTGGAAA 58.063 25.926 0.00 0.00 0.00 3.13
284 285 7.811236 AGCTTGTTGAAGTATCATCACATTTTG 59.189 33.333 0.00 0.00 35.53 2.44
351 353 2.293399 ACTTGAGGAAATTCCGTTGCAC 59.707 45.455 6.35 0.00 42.75 4.57
366 368 5.028549 ACATGAGGCTATTGGTACTTGAG 57.971 43.478 0.00 0.00 0.00 3.02
510 517 2.256461 GCTTGGGTTTCTGCGCAG 59.744 61.111 31.53 31.53 32.94 5.18
523 530 0.109597 GACGGACATTTGGCAGCTTG 60.110 55.000 0.00 0.00 0.00 4.01
552 573 0.035458 GGTGACTGACTGTTGGGAGG 59.965 60.000 0.00 0.00 0.00 4.30
749 779 1.332375 CTCGTTTTCCGTGAAAAGCCA 59.668 47.619 10.75 0.77 41.32 4.75
986 1023 3.114647 GACATCGAGGACGCTCGCT 62.115 63.158 3.06 0.00 45.45 4.93
1283 1331 2.359975 CCTGGAACCGCCACTTCC 60.360 66.667 0.00 0.00 43.33 3.46
1459 1507 4.038042 TCAGGCAATAAGTTCGATCGAGAT 59.962 41.667 18.54 10.82 0.00 2.75
1533 1581 5.245751 TGTTGCATCATCCATAACCAAAAGT 59.754 36.000 0.00 0.00 0.00 2.66
1853 1901 2.943034 GTCATCGCCGTCGTCGTC 60.943 66.667 0.71 0.00 36.96 4.20
1856 1904 2.879462 GTGGTCATCGCCGTCGTC 60.879 66.667 0.00 0.00 36.96 4.20
1857 1905 4.771356 CGTGGTCATCGCCGTCGT 62.771 66.667 0.00 0.00 36.96 4.34
2025 2074 0.807496 GAAGCATCTCCACCTGCAAC 59.193 55.000 0.00 0.00 40.88 4.17
2043 2092 1.689233 CCCCTCCATCTTCACCCGA 60.689 63.158 0.00 0.00 0.00 5.14
2316 2365 6.676990 AAGCAAGGAGAAAATTTGAATCCT 57.323 33.333 11.48 11.48 42.21 3.24
2445 2494 1.439679 ACTACGCCAGCAAGTTAAGC 58.560 50.000 0.00 0.00 0.00 3.09
2452 2501 3.527533 CTGGTAATAACTACGCCAGCAA 58.472 45.455 0.00 0.00 39.97 3.91
2457 2506 5.299279 TGGTAGTACTGGTAATAACTACGCC 59.701 44.000 5.39 0.00 43.31 5.68
2467 2516 3.084039 CACTCCGTGGTAGTACTGGTAA 58.916 50.000 5.39 0.00 0.00 2.85
2471 2520 2.925306 GCAACACTCCGTGGTAGTACTG 60.925 54.545 5.39 0.00 37.94 2.74
2472 2521 1.271656 GCAACACTCCGTGGTAGTACT 59.728 52.381 0.00 0.00 37.94 2.73
2473 2522 1.271656 AGCAACACTCCGTGGTAGTAC 59.728 52.381 0.00 0.00 37.94 2.73
2474 2523 1.624336 AGCAACACTCCGTGGTAGTA 58.376 50.000 0.00 0.00 37.94 1.82
2475 2524 0.756903 AAGCAACACTCCGTGGTAGT 59.243 50.000 0.00 0.00 37.94 2.73
2476 2525 1.148310 CAAGCAACACTCCGTGGTAG 58.852 55.000 0.00 0.00 37.94 3.18
2477 2526 0.753867 TCAAGCAACACTCCGTGGTA 59.246 50.000 0.00 0.00 37.94 3.25
2487 2536 2.295909 GCCCAACACTAATCAAGCAACA 59.704 45.455 0.00 0.00 0.00 3.33
2502 2551 2.686816 CGACATTCGGGTGCCCAAC 61.687 63.158 8.14 0.00 36.00 3.77
2541 2590 1.329256 AGTCGCTGACCAGTAGTTGT 58.671 50.000 5.29 0.00 32.18 3.32
2609 2658 1.276138 CAGGCCATTTCAAAACTCCCC 59.724 52.381 5.01 0.00 0.00 4.81
2671 2720 1.076192 AGAGGCAACAGGCTTGCAT 59.924 52.632 12.83 5.77 46.58 3.96
2682 2731 1.827789 GGCCACAACACAGAGGCAA 60.828 57.895 0.00 0.00 45.61 4.52
2683 2732 2.203337 GGCCACAACACAGAGGCA 60.203 61.111 0.00 0.00 45.61 4.75
2684 2733 1.529244 AAGGCCACAACACAGAGGC 60.529 57.895 5.01 0.00 43.46 4.70
2686 2735 0.664761 CACAAGGCCACAACACAGAG 59.335 55.000 5.01 0.00 0.00 3.35
2687 2736 0.751277 CCACAAGGCCACAACACAGA 60.751 55.000 5.01 0.00 0.00 3.41
2688 2737 1.735360 CCACAAGGCCACAACACAG 59.265 57.895 5.01 0.00 0.00 3.66
2689 2738 1.756172 CCCACAAGGCCACAACACA 60.756 57.895 5.01 0.00 0.00 3.72
2690 2739 2.498056 CCCCACAAGGCCACAACAC 61.498 63.158 5.01 0.00 0.00 3.32
2691 2740 2.017668 ATCCCCACAAGGCCACAACA 62.018 55.000 5.01 0.00 0.00 3.33
2692 2741 1.228862 ATCCCCACAAGGCCACAAC 60.229 57.895 5.01 0.00 0.00 3.32
2693 2742 1.228831 CATCCCCACAAGGCCACAA 60.229 57.895 5.01 0.00 0.00 3.33
2694 2743 2.440147 CATCCCCACAAGGCCACA 59.560 61.111 5.01 0.00 0.00 4.17
2695 2744 2.362889 CCATCCCCACAAGGCCAC 60.363 66.667 5.01 0.00 0.00 5.01
2696 2745 4.380945 GCCATCCCCACAAGGCCA 62.381 66.667 5.01 0.00 41.25 5.36
2697 2746 3.684369 ATGCCATCCCCACAAGGCC 62.684 63.158 0.00 0.00 46.45 5.19
2699 2748 0.258484 TACATGCCATCCCCACAAGG 59.742 55.000 0.00 0.00 0.00 3.61
2700 2749 1.340893 TGTACATGCCATCCCCACAAG 60.341 52.381 0.00 0.00 0.00 3.16
2739 2788 7.773489 TCAGATCAATTACTCATCTCCCTAG 57.227 40.000 0.00 0.00 0.00 3.02
2835 2884 2.416547 CCATTAACCTCTCGTGTTGCTG 59.583 50.000 0.00 0.00 0.00 4.41
2947 2996 2.034687 CCATCATCCCATCCGCCC 59.965 66.667 0.00 0.00 0.00 6.13
2969 3019 5.491982 AGCTATTGTGGAAGAAACGAAGAT 58.508 37.500 0.00 0.00 0.00 2.40
2987 3037 3.666274 ACGAGTAGCAGTATCGAGCTAT 58.334 45.455 7.30 0.00 44.32 2.97
3154 3231 2.447047 ACCCAGGACAATCTCCAAAAGT 59.553 45.455 0.00 0.00 42.46 2.66
3238 3315 9.658799 TTTAAAATTGACAGAGGAGTATCTCAG 57.341 33.333 0.00 0.00 36.30 3.35
3303 3384 7.435068 AAAAATACGCACTTCACAGAACTAT 57.565 32.000 0.00 0.00 0.00 2.12
3335 3416 6.940298 CCTCTAGAACAGAACCAACCATTTTA 59.060 38.462 0.00 0.00 31.12 1.52
3435 3519 3.443099 AAGTGGCTTGCACTTCTTTTC 57.557 42.857 1.46 0.00 38.37 2.29
3760 3936 7.618442 CACAATAGTTATTGCGGTAGTAGTTG 58.382 38.462 10.90 0.00 45.24 3.16
3912 4092 3.586470 TGCCCCTTCAAACAAGAGTTA 57.414 42.857 0.00 0.00 36.84 2.24
3943 4123 6.430925 TGCCATAATTACAAGCTGTATGATCC 59.569 38.462 0.00 0.00 32.20 3.36
3954 4134 7.335422 GGTGGATATCTCTGCCATAATTACAAG 59.665 40.741 2.05 0.00 33.66 3.16
3968 4148 7.459125 TGAAAGCCTATAATGGTGGATATCTCT 59.541 37.037 2.05 0.00 0.00 3.10
4035 4215 4.575645 CGCAATAAAAGTTTCCCCGGTATA 59.424 41.667 0.00 0.00 0.00 1.47
4040 4220 1.201414 AGCGCAATAAAAGTTTCCCCG 59.799 47.619 11.47 0.00 0.00 5.73
4114 4309 1.593006 CGAGTTTTCTTCTGTGCACGT 59.407 47.619 13.13 0.00 0.00 4.49
4133 4329 5.051641 GCAGGACATAATTTAACTCGACTCG 60.052 44.000 0.00 0.00 0.00 4.18
4451 4647 4.301637 ACTTTTGTAAACCCAAGAAGCG 57.698 40.909 0.00 0.00 0.00 4.68
4550 4785 6.041296 ACATCTTGCTCTGAATTCCAAAAGTT 59.959 34.615 2.27 0.00 0.00 2.66
4568 4803 7.147312 TCTTTTGTTTCAGCCAATACATCTTG 58.853 34.615 0.00 0.00 0.00 3.02
4578 4813 4.776349 TGAGTACTCTTTTGTTTCAGCCA 58.224 39.130 23.01 0.00 0.00 4.75
4580 4815 9.730420 TTAAAATGAGTACTCTTTTGTTTCAGC 57.270 29.630 27.89 0.80 37.14 4.26
4591 4826 9.536510 AGAACTCCTAGTTAAAATGAGTACTCT 57.463 33.333 23.01 6.04 38.80 3.24
4604 4839 4.077108 TGCGAGAACAGAACTCCTAGTTA 58.923 43.478 0.00 0.00 38.80 2.24
4607 4842 3.577649 TTGCGAGAACAGAACTCCTAG 57.422 47.619 0.00 0.00 0.00 3.02
4633 4868 6.261158 GCAAGAACAGAACTCCTACTCTTTTT 59.739 38.462 0.00 0.00 0.00 1.94
4634 4869 5.760743 GCAAGAACAGAACTCCTACTCTTTT 59.239 40.000 0.00 0.00 0.00 2.27
4635 4870 5.301555 GCAAGAACAGAACTCCTACTCTTT 58.698 41.667 0.00 0.00 0.00 2.52
4636 4871 4.559704 CGCAAGAACAGAACTCCTACTCTT 60.560 45.833 0.00 0.00 43.02 2.85
4637 4872 3.057174 CGCAAGAACAGAACTCCTACTCT 60.057 47.826 0.00 0.00 43.02 3.24
4638 4873 3.246619 CGCAAGAACAGAACTCCTACTC 58.753 50.000 0.00 0.00 43.02 2.59
4639 4874 2.610727 GCGCAAGAACAGAACTCCTACT 60.611 50.000 0.30 0.00 43.02 2.57
4640 4875 1.727335 GCGCAAGAACAGAACTCCTAC 59.273 52.381 0.30 0.00 43.02 3.18
4641 4876 1.337823 GGCGCAAGAACAGAACTCCTA 60.338 52.381 10.83 0.00 43.02 2.94
4642 4877 0.603975 GGCGCAAGAACAGAACTCCT 60.604 55.000 10.83 0.00 43.02 3.69
4643 4878 0.603975 AGGCGCAAGAACAGAACTCC 60.604 55.000 10.83 0.00 43.02 3.85
4644 4879 2.080286 TAGGCGCAAGAACAGAACTC 57.920 50.000 10.83 0.00 43.02 3.01
4645 4880 2.543777 TTAGGCGCAAGAACAGAACT 57.456 45.000 10.83 0.00 43.02 3.01
4646 4881 2.806244 TCTTTAGGCGCAAGAACAGAAC 59.194 45.455 10.83 0.00 43.02 3.01
4647 4882 3.120321 TCTTTAGGCGCAAGAACAGAA 57.880 42.857 10.83 0.00 43.02 3.02
4648 4883 2.831685 TCTTTAGGCGCAAGAACAGA 57.168 45.000 10.83 0.00 43.02 3.41
4649 4884 4.391830 TGTAATCTTTAGGCGCAAGAACAG 59.608 41.667 10.83 0.00 43.02 3.16
4650 4885 4.320023 TGTAATCTTTAGGCGCAAGAACA 58.680 39.130 10.83 9.35 43.02 3.18
4651 4886 4.939509 TGTAATCTTTAGGCGCAAGAAC 57.060 40.909 10.83 6.78 43.02 3.01
4652 4887 4.155280 GGTTGTAATCTTTAGGCGCAAGAA 59.845 41.667 10.83 0.00 43.02 2.52
4653 4888 3.687698 GGTTGTAATCTTTAGGCGCAAGA 59.312 43.478 10.83 10.72 43.02 3.02
4654 4889 3.689649 AGGTTGTAATCTTTAGGCGCAAG 59.310 43.478 10.83 4.40 43.44 4.01
4655 4890 3.681593 AGGTTGTAATCTTTAGGCGCAA 58.318 40.909 10.83 0.00 0.00 4.85
4656 4891 3.343941 AGGTTGTAATCTTTAGGCGCA 57.656 42.857 10.83 0.00 0.00 6.09
4657 4892 3.687698 TCAAGGTTGTAATCTTTAGGCGC 59.312 43.478 0.00 0.00 0.00 6.53
4658 4893 6.436843 AATCAAGGTTGTAATCTTTAGGCG 57.563 37.500 0.00 0.00 0.00 5.52
4659 4894 8.056407 AGAAATCAAGGTTGTAATCTTTAGGC 57.944 34.615 0.00 0.00 0.00 3.93
4668 4903 9.706691 CTGTAGAGTAAGAAATCAAGGTTGTAA 57.293 33.333 0.00 0.00 0.00 2.41
4669 4904 8.867097 ACTGTAGAGTAAGAAATCAAGGTTGTA 58.133 33.333 0.00 0.00 0.00 2.41
4670 4905 7.736893 ACTGTAGAGTAAGAAATCAAGGTTGT 58.263 34.615 0.00 0.00 0.00 3.32
4671 4906 9.706691 TTACTGTAGAGTAAGAAATCAAGGTTG 57.293 33.333 8.34 0.00 39.34 3.77
4672 4907 9.708092 GTTACTGTAGAGTAAGAAATCAAGGTT 57.292 33.333 12.47 0.00 43.84 3.50
4673 4908 9.091220 AGTTACTGTAGAGTAAGAAATCAAGGT 57.909 33.333 12.47 0.00 43.84 3.50
4674 4909 9.930693 AAGTTACTGTAGAGTAAGAAATCAAGG 57.069 33.333 12.47 0.00 43.84 3.61
4680 4915 9.796180 AGAGAGAAGTTACTGTAGAGTAAGAAA 57.204 33.333 12.47 0.00 43.84 2.52
4681 4916 9.221933 CAGAGAGAAGTTACTGTAGAGTAAGAA 57.778 37.037 12.47 0.00 43.84 2.52
4682 4917 8.595421 TCAGAGAGAAGTTACTGTAGAGTAAGA 58.405 37.037 12.47 1.44 43.84 2.10
4683 4918 8.780846 TCAGAGAGAAGTTACTGTAGAGTAAG 57.219 38.462 12.47 0.00 43.84 2.34
4684 4919 9.570468 TTTCAGAGAGAAGTTACTGTAGAGTAA 57.430 33.333 8.34 8.34 38.61 2.24
4685 4920 9.570468 TTTTCAGAGAGAAGTTACTGTAGAGTA 57.430 33.333 0.00 0.00 37.57 2.59
4686 4921 8.354426 GTTTTCAGAGAGAAGTTACTGTAGAGT 58.646 37.037 0.00 0.00 37.57 3.24
4687 4922 8.353684 TGTTTTCAGAGAGAAGTTACTGTAGAG 58.646 37.037 0.00 0.00 37.57 2.43
4688 4923 8.234136 TGTTTTCAGAGAGAAGTTACTGTAGA 57.766 34.615 0.00 0.00 37.57 2.59
4689 4924 8.873215 TTGTTTTCAGAGAGAAGTTACTGTAG 57.127 34.615 0.00 0.00 37.57 2.74
4690 4925 9.661563 TTTTGTTTTCAGAGAGAAGTTACTGTA 57.338 29.630 0.00 0.00 37.57 2.74
4691 4926 8.561738 TTTTGTTTTCAGAGAGAAGTTACTGT 57.438 30.769 0.00 0.00 37.57 3.55
4696 4931 9.396022 TCACTATTTTGTTTTCAGAGAGAAGTT 57.604 29.630 0.00 0.00 37.57 2.66
4697 4932 8.964476 TCACTATTTTGTTTTCAGAGAGAAGT 57.036 30.769 0.00 0.00 37.57 3.01
4700 4935 9.342308 ACATTCACTATTTTGTTTTCAGAGAGA 57.658 29.630 0.00 0.00 0.00 3.10
4701 4936 9.390795 CACATTCACTATTTTGTTTTCAGAGAG 57.609 33.333 0.00 0.00 0.00 3.20
4702 4937 8.902806 ACACATTCACTATTTTGTTTTCAGAGA 58.097 29.630 0.00 0.00 0.00 3.10
4703 4938 9.173939 GACACATTCACTATTTTGTTTTCAGAG 57.826 33.333 0.00 0.00 0.00 3.35
4704 4939 8.681806 TGACACATTCACTATTTTGTTTTCAGA 58.318 29.630 0.00 0.00 0.00 3.27
4705 4940 8.854979 TGACACATTCACTATTTTGTTTTCAG 57.145 30.769 0.00 0.00 0.00 3.02
4706 4941 8.681806 TCTGACACATTCACTATTTTGTTTTCA 58.318 29.630 0.00 0.00 0.00 2.69
4707 4942 9.683069 ATCTGACACATTCACTATTTTGTTTTC 57.317 29.630 0.00 0.00 0.00 2.29
4708 4943 9.467258 CATCTGACACATTCACTATTTTGTTTT 57.533 29.630 0.00 0.00 0.00 2.43
4709 4944 8.084073 CCATCTGACACATTCACTATTTTGTTT 58.916 33.333 0.00 0.00 0.00 2.83
4710 4945 7.231317 ACCATCTGACACATTCACTATTTTGTT 59.769 33.333 0.00 0.00 0.00 2.83
4711 4946 6.716628 ACCATCTGACACATTCACTATTTTGT 59.283 34.615 0.00 0.00 0.00 2.83
4712 4947 7.149569 ACCATCTGACACATTCACTATTTTG 57.850 36.000 0.00 0.00 0.00 2.44
4713 4948 7.765695 AACCATCTGACACATTCACTATTTT 57.234 32.000 0.00 0.00 0.00 1.82
4714 4949 7.765695 AAACCATCTGACACATTCACTATTT 57.234 32.000 0.00 0.00 0.00 1.40
4715 4950 7.448161 TGAAAACCATCTGACACATTCACTATT 59.552 33.333 0.00 0.00 0.00 1.73
4716 4951 6.942005 TGAAAACCATCTGACACATTCACTAT 59.058 34.615 0.00 0.00 0.00 2.12
4717 4952 6.204688 GTGAAAACCATCTGACACATTCACTA 59.795 38.462 13.42 0.00 41.15 2.74
4718 4953 5.009010 GTGAAAACCATCTGACACATTCACT 59.991 40.000 13.42 0.00 41.15 3.41
4719 4954 5.009010 AGTGAAAACCATCTGACACATTCAC 59.991 40.000 13.06 13.06 43.38 3.18
4720 4955 5.132502 AGTGAAAACCATCTGACACATTCA 58.867 37.500 0.00 0.00 0.00 2.57
4721 4956 5.695851 AGTGAAAACCATCTGACACATTC 57.304 39.130 0.00 0.00 0.00 2.67
4722 4957 6.096705 TGAAAGTGAAAACCATCTGACACATT 59.903 34.615 0.00 0.00 0.00 2.71
4723 4958 5.593909 TGAAAGTGAAAACCATCTGACACAT 59.406 36.000 0.00 0.00 0.00 3.21
4724 4959 4.946772 TGAAAGTGAAAACCATCTGACACA 59.053 37.500 0.00 0.00 0.00 3.72
4725 4960 5.499139 TGAAAGTGAAAACCATCTGACAC 57.501 39.130 0.00 0.00 0.00 3.67
4726 4961 5.756195 CTGAAAGTGAAAACCATCTGACA 57.244 39.130 0.00 0.00 0.00 3.58
5355 5590 3.394274 TGACCTCAGAATTCAAGGAACCA 59.606 43.478 25.55 18.22 34.16 3.67
5356 5591 4.006319 CTGACCTCAGAATTCAAGGAACC 58.994 47.826 25.55 16.60 46.59 3.62
5357 5592 4.646572 ACTGACCTCAGAATTCAAGGAAC 58.353 43.478 25.55 19.50 46.59 3.62
5358 5593 4.982241 ACTGACCTCAGAATTCAAGGAA 57.018 40.909 25.55 15.51 46.59 3.36
5359 5594 4.081420 GCTACTGACCTCAGAATTCAAGGA 60.081 45.833 25.55 12.31 46.59 3.36
5360 5595 4.187694 GCTACTGACCTCAGAATTCAAGG 58.812 47.826 19.92 19.92 46.59 3.61
5361 5596 4.081198 AGGCTACTGACCTCAGAATTCAAG 60.081 45.833 8.44 4.63 46.59 3.02
5362 5597 3.840666 AGGCTACTGACCTCAGAATTCAA 59.159 43.478 8.44 0.00 46.59 2.69
5363 5598 3.445008 AGGCTACTGACCTCAGAATTCA 58.555 45.455 8.44 0.00 46.59 2.57
5372 5607 5.151454 AGCATAATTAGAGGCTACTGACCT 58.849 41.667 7.15 0.00 41.41 3.85
5373 5608 5.476091 AGCATAATTAGAGGCTACTGACC 57.524 43.478 7.15 0.00 34.25 4.02
5374 5609 6.293135 GCAAAGCATAATTAGAGGCTACTGAC 60.293 42.308 15.42 8.38 35.11 3.51
5375 5610 5.760253 GCAAAGCATAATTAGAGGCTACTGA 59.240 40.000 15.42 0.00 35.11 3.41
5376 5611 5.528690 TGCAAAGCATAATTAGAGGCTACTG 59.471 40.000 8.85 10.01 35.11 2.74
5377 5612 5.684704 TGCAAAGCATAATTAGAGGCTACT 58.315 37.500 8.85 0.00 35.11 2.57
5386 5621 7.775093 AGGTACTGAAGATGCAAAGCATAATTA 59.225 33.333 4.23 0.00 44.47 1.40
5387 5622 6.604795 AGGTACTGAAGATGCAAAGCATAATT 59.395 34.615 4.23 3.31 44.47 1.40
5388 5623 6.125029 AGGTACTGAAGATGCAAAGCATAAT 58.875 36.000 4.23 0.00 44.47 1.28
5389 5624 5.500234 AGGTACTGAAGATGCAAAGCATAA 58.500 37.500 4.23 0.00 44.47 1.90
5390 5625 5.102953 AGGTACTGAAGATGCAAAGCATA 57.897 39.130 4.23 0.00 44.47 3.14
5391 5626 3.960571 AGGTACTGAAGATGCAAAGCAT 58.039 40.909 3.85 3.85 46.48 3.79
5392 5627 3.423539 AGGTACTGAAGATGCAAAGCA 57.576 42.857 0.00 0.00 39.99 3.91
5393 5628 4.759782 TCTAGGTACTGAAGATGCAAAGC 58.240 43.478 0.00 0.00 41.52 3.51
5394 5629 6.183360 CGTTTCTAGGTACTGAAGATGCAAAG 60.183 42.308 0.00 0.00 41.52 2.77
5395 5630 5.637810 CGTTTCTAGGTACTGAAGATGCAAA 59.362 40.000 0.00 0.00 41.52 3.68
5396 5631 5.168569 CGTTTCTAGGTACTGAAGATGCAA 58.831 41.667 0.00 0.00 41.52 4.08
5397 5632 4.744570 CGTTTCTAGGTACTGAAGATGCA 58.255 43.478 0.00 0.00 41.52 3.96
5398 5633 3.552294 GCGTTTCTAGGTACTGAAGATGC 59.448 47.826 0.00 1.72 41.52 3.91
5399 5634 5.000012 AGCGTTTCTAGGTACTGAAGATG 58.000 43.478 0.00 0.00 41.52 2.90
5400 5635 5.419471 AGAAGCGTTTCTAGGTACTGAAGAT 59.581 40.000 13.29 0.00 41.82 2.40
5401 5636 4.765856 AGAAGCGTTTCTAGGTACTGAAGA 59.234 41.667 13.29 0.00 41.82 2.87
5402 5637 5.061920 AGAAGCGTTTCTAGGTACTGAAG 57.938 43.478 13.29 0.00 41.82 3.02
5403 5638 5.227908 CAAGAAGCGTTTCTAGGTACTGAA 58.772 41.667 15.26 0.00 42.80 3.02
5404 5639 4.321750 CCAAGAAGCGTTTCTAGGTACTGA 60.322 45.833 15.26 0.00 42.80 3.41
5405 5640 3.927142 CCAAGAAGCGTTTCTAGGTACTG 59.073 47.826 15.26 8.35 42.80 2.74
5406 5641 3.056035 CCCAAGAAGCGTTTCTAGGTACT 60.056 47.826 15.26 0.00 42.80 2.73
5407 5642 3.259902 CCCAAGAAGCGTTTCTAGGTAC 58.740 50.000 15.26 0.00 42.80 3.34
5408 5643 2.901839 ACCCAAGAAGCGTTTCTAGGTA 59.098 45.455 25.54 0.00 43.31 3.08
5409 5644 1.697982 ACCCAAGAAGCGTTTCTAGGT 59.302 47.619 22.91 22.91 42.80 3.08
5410 5645 2.474410 ACCCAAGAAGCGTTTCTAGG 57.526 50.000 21.91 21.91 42.80 3.02
5411 5646 4.753107 TGTAAACCCAAGAAGCGTTTCTAG 59.247 41.667 15.26 9.60 42.80 2.43
5412 5647 4.706035 TGTAAACCCAAGAAGCGTTTCTA 58.294 39.130 15.26 0.00 42.80 2.10
5413 5648 3.547746 TGTAAACCCAAGAAGCGTTTCT 58.452 40.909 8.90 8.90 45.51 2.52
5414 5649 3.974871 TGTAAACCCAAGAAGCGTTTC 57.025 42.857 3.49 3.49 32.28 2.78
5415 5650 4.722361 TTTGTAAACCCAAGAAGCGTTT 57.278 36.364 0.00 0.00 34.29 3.60
5416 5651 4.158949 ACTTTTGTAAACCCAAGAAGCGTT 59.841 37.500 0.00 0.00 0.00 4.84
5417 5652 3.697542 ACTTTTGTAAACCCAAGAAGCGT 59.302 39.130 0.00 0.00 0.00 5.07
5418 5653 4.301637 ACTTTTGTAAACCCAAGAAGCG 57.698 40.909 0.00 0.00 0.00 4.68
5419 5654 8.657074 AAATTACTTTTGTAAACCCAAGAAGC 57.343 30.769 0.00 0.00 46.51 3.86
5431 5666 9.738832 GCCTCAACAACTAAAATTACTTTTGTA 57.261 29.630 1.32 0.00 36.09 2.41
5432 5667 8.474831 AGCCTCAACAACTAAAATTACTTTTGT 58.525 29.630 1.32 0.00 36.09 2.83
5433 5668 8.871686 AGCCTCAACAACTAAAATTACTTTTG 57.128 30.769 1.32 0.00 36.09 2.44
5434 5669 8.914011 AGAGCCTCAACAACTAAAATTACTTTT 58.086 29.630 0.00 0.00 38.17 2.27
5435 5670 8.352942 CAGAGCCTCAACAACTAAAATTACTTT 58.647 33.333 0.00 0.00 0.00 2.66
5436 5671 7.040409 CCAGAGCCTCAACAACTAAAATTACTT 60.040 37.037 0.00 0.00 0.00 2.24
5437 5672 6.431234 CCAGAGCCTCAACAACTAAAATTACT 59.569 38.462 0.00 0.00 0.00 2.24
5438 5673 6.206829 ACCAGAGCCTCAACAACTAAAATTAC 59.793 38.462 0.00 0.00 0.00 1.89
5439 5674 6.303839 ACCAGAGCCTCAACAACTAAAATTA 58.696 36.000 0.00 0.00 0.00 1.40
5440 5675 5.140454 ACCAGAGCCTCAACAACTAAAATT 58.860 37.500 0.00 0.00 0.00 1.82
5441 5676 4.729868 ACCAGAGCCTCAACAACTAAAAT 58.270 39.130 0.00 0.00 0.00 1.82
5442 5677 4.164843 ACCAGAGCCTCAACAACTAAAA 57.835 40.909 0.00 0.00 0.00 1.52
5443 5678 3.857157 ACCAGAGCCTCAACAACTAAA 57.143 42.857 0.00 0.00 0.00 1.85
5444 5679 4.347000 AGTTACCAGAGCCTCAACAACTAA 59.653 41.667 0.00 0.00 0.00 2.24
5445 5680 3.901844 AGTTACCAGAGCCTCAACAACTA 59.098 43.478 0.00 0.00 0.00 2.24
5446 5681 2.706190 AGTTACCAGAGCCTCAACAACT 59.294 45.455 0.00 0.00 0.00 3.16
5447 5682 2.808543 CAGTTACCAGAGCCTCAACAAC 59.191 50.000 0.00 0.00 0.00 3.32
5448 5683 2.810400 GCAGTTACCAGAGCCTCAACAA 60.810 50.000 0.00 0.00 0.00 2.83
5449 5684 1.270839 GCAGTTACCAGAGCCTCAACA 60.271 52.381 0.00 0.00 0.00 3.33
5450 5685 1.270839 TGCAGTTACCAGAGCCTCAAC 60.271 52.381 0.00 0.00 0.00 3.18
5451 5686 1.055849 TGCAGTTACCAGAGCCTCAA 58.944 50.000 0.00 0.00 0.00 3.02
5452 5687 1.208052 GATGCAGTTACCAGAGCCTCA 59.792 52.381 0.00 0.00 0.00 3.86
5453 5688 1.804372 CGATGCAGTTACCAGAGCCTC 60.804 57.143 0.00 0.00 0.00 4.70
5454 5689 0.176680 CGATGCAGTTACCAGAGCCT 59.823 55.000 0.00 0.00 0.00 4.58
5455 5690 0.108138 ACGATGCAGTTACCAGAGCC 60.108 55.000 0.00 0.00 0.00 4.70
5456 5691 1.281899 GACGATGCAGTTACCAGAGC 58.718 55.000 0.00 0.00 0.00 4.09
5457 5692 1.478510 AGGACGATGCAGTTACCAGAG 59.521 52.381 0.00 0.00 0.00 3.35
5458 5693 1.557099 AGGACGATGCAGTTACCAGA 58.443 50.000 0.00 0.00 0.00 3.86
5459 5694 2.386661 AAGGACGATGCAGTTACCAG 57.613 50.000 0.00 0.00 0.00 4.00
5460 5695 2.851263 AAAGGACGATGCAGTTACCA 57.149 45.000 0.00 0.00 0.00 3.25
5461 5696 3.592059 TGTAAAGGACGATGCAGTTACC 58.408 45.455 0.00 0.00 0.00 2.85
5462 5697 6.019801 CAGTATGTAAAGGACGATGCAGTTAC 60.020 42.308 0.00 0.00 0.00 2.50
5463 5698 6.040247 CAGTATGTAAAGGACGATGCAGTTA 58.960 40.000 0.00 0.00 0.00 2.24
5464 5699 4.870426 CAGTATGTAAAGGACGATGCAGTT 59.130 41.667 0.00 0.00 0.00 3.16
5465 5700 4.433615 CAGTATGTAAAGGACGATGCAGT 58.566 43.478 0.00 0.00 0.00 4.40
5466 5701 3.804325 CCAGTATGTAAAGGACGATGCAG 59.196 47.826 0.00 0.00 0.00 4.41
5467 5702 3.196901 ACCAGTATGTAAAGGACGATGCA 59.803 43.478 0.00 0.00 0.00 3.96
5468 5703 3.555956 CACCAGTATGTAAAGGACGATGC 59.444 47.826 0.00 0.00 0.00 3.91
5469 5704 4.566759 CACACCAGTATGTAAAGGACGATG 59.433 45.833 0.00 0.00 0.00 3.84
5470 5705 4.755411 CACACCAGTATGTAAAGGACGAT 58.245 43.478 0.00 0.00 0.00 3.73
5471 5706 3.615592 GCACACCAGTATGTAAAGGACGA 60.616 47.826 0.00 0.00 0.00 4.20
5472 5707 2.671396 GCACACCAGTATGTAAAGGACG 59.329 50.000 0.00 0.00 0.00 4.79
5473 5708 3.939066 AGCACACCAGTATGTAAAGGAC 58.061 45.455 0.00 0.00 0.00 3.85
5474 5709 4.775780 AGTAGCACACCAGTATGTAAAGGA 59.224 41.667 0.00 0.00 0.00 3.36
5475 5710 5.086104 AGTAGCACACCAGTATGTAAAGG 57.914 43.478 0.00 0.00 0.00 3.11
5476 5711 7.224753 CCATTAGTAGCACACCAGTATGTAAAG 59.775 40.741 0.00 0.00 0.00 1.85
5477 5712 7.045416 CCATTAGTAGCACACCAGTATGTAAA 58.955 38.462 0.00 0.00 0.00 2.01
5478 5713 6.578944 CCATTAGTAGCACACCAGTATGTAA 58.421 40.000 0.00 0.00 0.00 2.41
5479 5714 5.452776 GCCATTAGTAGCACACCAGTATGTA 60.453 44.000 0.00 0.00 0.00 2.29
5480 5715 4.683400 GCCATTAGTAGCACACCAGTATGT 60.683 45.833 0.00 0.00 0.00 2.29
5481 5716 3.809832 GCCATTAGTAGCACACCAGTATG 59.190 47.826 0.00 0.00 0.00 2.39
5482 5717 3.454447 TGCCATTAGTAGCACACCAGTAT 59.546 43.478 0.00 0.00 33.08 2.12
5483 5718 2.835156 TGCCATTAGTAGCACACCAGTA 59.165 45.455 0.00 0.00 33.08 2.74
5484 5719 1.628340 TGCCATTAGTAGCACACCAGT 59.372 47.619 0.00 0.00 33.08 4.00
5485 5720 2.401583 TGCCATTAGTAGCACACCAG 57.598 50.000 0.00 0.00 33.08 4.00
5506 5741 4.902443 TTCCAAAAGTTGATGCACGTAA 57.098 36.364 0.00 0.00 0.00 3.18
5507 5742 5.009110 TGAATTCCAAAAGTTGATGCACGTA 59.991 36.000 2.27 0.00 0.00 3.57
5508 5743 4.202101 TGAATTCCAAAAGTTGATGCACGT 60.202 37.500 2.27 0.00 0.00 4.49
5509 5744 4.297510 TGAATTCCAAAAGTTGATGCACG 58.702 39.130 2.27 0.00 0.00 5.34
5510 5745 5.531634 TCTGAATTCCAAAAGTTGATGCAC 58.468 37.500 2.27 0.00 0.00 4.57
5511 5746 5.775686 CTCTGAATTCCAAAAGTTGATGCA 58.224 37.500 2.27 0.00 0.00 3.96
5512 5747 4.624452 GCTCTGAATTCCAAAAGTTGATGC 59.376 41.667 2.27 0.00 0.00 3.91
5513 5748 5.775686 TGCTCTGAATTCCAAAAGTTGATG 58.224 37.500 2.27 0.00 0.00 3.07
5514 5749 6.266103 TCTTGCTCTGAATTCCAAAAGTTGAT 59.734 34.615 2.27 0.00 0.00 2.57
5515 5750 5.593909 TCTTGCTCTGAATTCCAAAAGTTGA 59.406 36.000 2.27 0.00 0.00 3.18
5516 5751 5.835257 TCTTGCTCTGAATTCCAAAAGTTG 58.165 37.500 2.27 0.00 0.00 3.16
5517 5752 6.041296 ACATCTTGCTCTGAATTCCAAAAGTT 59.959 34.615 2.27 0.00 0.00 2.66
5518 5753 5.537674 ACATCTTGCTCTGAATTCCAAAAGT 59.462 36.000 2.27 0.00 0.00 2.66
5519 5754 6.022163 ACATCTTGCTCTGAATTCCAAAAG 57.978 37.500 2.27 0.73 0.00 2.27
5520 5755 7.707624 ATACATCTTGCTCTGAATTCCAAAA 57.292 32.000 2.27 0.00 0.00 2.44
5521 5756 7.707624 AATACATCTTGCTCTGAATTCCAAA 57.292 32.000 2.27 0.00 0.00 3.28
5522 5757 7.541162 CAAATACATCTTGCTCTGAATTCCAA 58.459 34.615 2.27 0.00 0.00 3.53
5523 5758 6.405065 GCAAATACATCTTGCTCTGAATTCCA 60.405 38.462 2.27 0.00 44.66 3.53
5524 5759 5.975939 GCAAATACATCTTGCTCTGAATTCC 59.024 40.000 2.27 0.00 44.66 3.01
5535 5770 8.578308 TCTTTTGTTTCAGCAAATACATCTTG 57.422 30.769 0.00 0.00 38.05 3.02
5536 5771 8.416329 ACTCTTTTGTTTCAGCAAATACATCTT 58.584 29.630 0.00 0.00 38.05 2.40
5537 5772 7.945134 ACTCTTTTGTTTCAGCAAATACATCT 58.055 30.769 0.00 0.00 38.05 2.90
5538 5773 9.118236 GTACTCTTTTGTTTCAGCAAATACATC 57.882 33.333 0.00 0.00 38.05 3.06
5539 5774 8.850156 AGTACTCTTTTGTTTCAGCAAATACAT 58.150 29.630 0.00 0.00 38.05 2.29
5540 5775 8.220755 AGTACTCTTTTGTTTCAGCAAATACA 57.779 30.769 0.00 0.00 38.05 2.29
5541 5776 8.342634 TGAGTACTCTTTTGTTTCAGCAAATAC 58.657 33.333 23.01 0.00 38.05 1.89
5542 5777 8.445275 TGAGTACTCTTTTGTTTCAGCAAATA 57.555 30.769 23.01 0.00 38.05 1.40
5543 5778 7.333528 TGAGTACTCTTTTGTTTCAGCAAAT 57.666 32.000 23.01 0.00 38.05 2.32
5544 5779 6.751514 TGAGTACTCTTTTGTTTCAGCAAA 57.248 33.333 23.01 0.00 36.67 3.68
5545 5780 6.942532 ATGAGTACTCTTTTGTTTCAGCAA 57.057 33.333 23.01 0.00 0.00 3.91
5546 5781 6.942532 AATGAGTACTCTTTTGTTTCAGCA 57.057 33.333 23.01 0.00 0.00 4.41
5571 5806 4.077108 TGCGAGAACAGAACTCCTAGTTA 58.923 43.478 0.00 0.00 38.80 2.24
5574 5809 3.577649 TTGCGAGAACAGAACTCCTAG 57.422 47.619 0.00 0.00 0.00 3.02
5600 5835 6.261158 GCAAGAACAGAACTCCTACTCTTTTT 59.739 38.462 0.00 0.00 0.00 1.94
5601 5836 5.760743 GCAAGAACAGAACTCCTACTCTTTT 59.239 40.000 0.00 0.00 0.00 2.27
5602 5837 5.301555 GCAAGAACAGAACTCCTACTCTTT 58.698 41.667 0.00 0.00 0.00 2.52
5603 5838 4.559704 CGCAAGAACAGAACTCCTACTCTT 60.560 45.833 0.00 0.00 43.02 2.85
5604 5839 3.057174 CGCAAGAACAGAACTCCTACTCT 60.057 47.826 0.00 0.00 43.02 3.24
5605 5840 3.246619 CGCAAGAACAGAACTCCTACTC 58.753 50.000 0.00 0.00 43.02 2.59
5606 5841 2.610727 GCGCAAGAACAGAACTCCTACT 60.611 50.000 0.30 0.00 43.02 2.57
5607 5842 1.727335 GCGCAAGAACAGAACTCCTAC 59.273 52.381 0.30 0.00 43.02 3.18
5608 5843 1.337823 GGCGCAAGAACAGAACTCCTA 60.338 52.381 10.83 0.00 43.02 2.94
5609 5844 0.603975 GGCGCAAGAACAGAACTCCT 60.604 55.000 10.83 0.00 43.02 3.69
5610 5845 0.603975 AGGCGCAAGAACAGAACTCC 60.604 55.000 10.83 0.00 43.02 3.85
5611 5846 2.080286 TAGGCGCAAGAACAGAACTC 57.920 50.000 10.83 0.00 43.02 3.01
5612 5847 2.543777 TTAGGCGCAAGAACAGAACT 57.456 45.000 10.83 0.00 43.02 3.01
5613 5848 2.806244 TCTTTAGGCGCAAGAACAGAAC 59.194 45.455 10.83 0.00 43.02 3.01
5614 5849 3.120321 TCTTTAGGCGCAAGAACAGAA 57.880 42.857 10.83 0.00 43.02 3.02
5615 5850 2.831685 TCTTTAGGCGCAAGAACAGA 57.168 45.000 10.83 0.00 43.02 3.41
5616 5851 4.391830 TGTAATCTTTAGGCGCAAGAACAG 59.608 41.667 10.83 0.00 43.02 3.16
5617 5852 4.320023 TGTAATCTTTAGGCGCAAGAACA 58.680 39.130 10.83 9.35 43.02 3.18
5618 5853 4.939509 TGTAATCTTTAGGCGCAAGAAC 57.060 40.909 10.83 6.78 43.02 3.01
5619 5854 4.155280 GGTTGTAATCTTTAGGCGCAAGAA 59.845 41.667 10.83 0.00 43.02 2.52
5620 5855 3.687698 GGTTGTAATCTTTAGGCGCAAGA 59.312 43.478 10.83 10.72 43.02 3.02
5621 5856 3.689649 AGGTTGTAATCTTTAGGCGCAAG 59.310 43.478 10.83 4.40 43.44 4.01
5622 5857 3.681593 AGGTTGTAATCTTTAGGCGCAA 58.318 40.909 10.83 0.00 0.00 4.85
5663 5898 9.396022 TCACTATTTTGTTTTCAGAGAGAAGTT 57.604 29.630 0.00 0.00 37.57 2.66
5755 5990 6.192863 CGAAAGTTAAATATTTCAGCGACTGC 59.807 38.462 3.39 0.03 35.58 4.40
5761 5996 5.646606 TGCCCGAAAGTTAAATATTTCAGC 58.353 37.500 3.39 9.90 35.58 4.26
5774 6009 4.021544 TGCTGAAATATTTTGCCCGAAAGT 60.022 37.500 18.21 0.00 0.00 2.66
5782 6017 9.143631 ACTACTGAAATTGCTGAAATATTTTGC 57.856 29.630 15.69 15.69 0.00 3.68
5856 6091 5.660460 GGTCAAAAGACCAAAATGTTCACT 58.340 37.500 9.66 0.00 44.39 3.41
5879 6114 1.797964 CTATTTCGGCTTGCGTTTCG 58.202 50.000 0.00 0.00 0.00 3.46
5930 6165 8.503196 GGTTTTCACTTTCAGTTTCAAACAAAT 58.497 29.630 2.41 0.00 0.00 2.32
5934 6170 6.645003 ACAGGTTTTCACTTTCAGTTTCAAAC 59.355 34.615 0.00 0.00 0.00 2.93
5936 6172 6.015856 TGACAGGTTTTCACTTTCAGTTTCAA 60.016 34.615 0.00 0.00 0.00 2.69
5994 6230 2.679837 CAGTGTGTCTGAACTTGCACTT 59.320 45.455 0.00 0.00 46.27 3.16
6001 6243 2.092968 TGGAAAGCAGTGTGTCTGAACT 60.093 45.455 0.00 0.00 46.27 3.01
6020 6262 5.170748 GCAGTCCATTCCAAATAAAACTGG 58.829 41.667 0.00 0.00 34.80 4.00
6051 6293 3.730269 ACTAGAGATTTTCCCAGAGCCT 58.270 45.455 0.00 0.00 0.00 4.58
6126 6368 9.175312 CTGGCTATAATATGAGCATCTGAAAAT 57.825 33.333 6.80 0.00 40.64 1.82
6137 6410 8.613060 AACAACATCACTGGCTATAATATGAG 57.387 34.615 0.00 0.00 0.00 2.90
6141 6414 9.710900 CAGATAACAACATCACTGGCTATAATA 57.289 33.333 0.00 0.00 0.00 0.98
6176 6457 5.047802 AGCATCTGGTGAAATGTTAACAAGG 60.048 40.000 13.23 0.00 0.00 3.61
6453 6734 3.120385 TGCTTCACGCGGCAGATG 61.120 61.111 12.47 8.88 43.27 2.90
6712 7007 2.663796 CAGCTGAGCTCAGTGGCT 59.336 61.111 37.25 28.81 45.45 4.75
6860 7157 3.618594 TGAGTTGAGAAGTTGCATATCGC 59.381 43.478 0.00 0.00 42.89 4.58
6863 7160 7.108194 TGATTCTGAGTTGAGAAGTTGCATAT 58.892 34.615 0.00 0.00 35.44 1.78
7004 7311 1.227764 CGCCTGGGTCTCCATGATG 60.228 63.158 0.00 0.00 43.11 3.07
7308 7618 0.393537 CATCTGTCCCCAGCCTTGAC 60.394 60.000 0.00 0.00 38.66 3.18
7317 7627 2.187946 CGCTCCACATCTGTCCCC 59.812 66.667 0.00 0.00 0.00 4.81
7322 7632 0.812811 CCATCACCGCTCCACATCTG 60.813 60.000 0.00 0.00 0.00 2.90
7336 7649 1.279025 GGCCTCCCTTACCACCATCA 61.279 60.000 0.00 0.00 0.00 3.07
7338 7651 0.627469 ATGGCCTCCCTTACCACCAT 60.627 55.000 3.32 0.00 35.99 3.55
7440 7773 1.296984 TCTCCTCCTCCCGTAGTCTT 58.703 55.000 0.00 0.00 0.00 3.01
7441 7774 1.213430 CTTCTCCTCCTCCCGTAGTCT 59.787 57.143 0.00 0.00 0.00 3.24
7478 7811 0.808453 GCCGCTAAATGACACGCCTA 60.808 55.000 0.00 0.00 0.00 3.93
7480 7813 1.917782 TTGCCGCTAAATGACACGCC 61.918 55.000 0.00 0.00 0.00 5.68
7482 7815 0.521242 GCTTGCCGCTAAATGACACG 60.521 55.000 0.00 0.00 35.14 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.