Multiple sequence alignment - TraesCS4B01G243600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G243600 chr4B 100.000 2339 0 0 1 2339 504944563 504942225 0.000000e+00 4320.0
1 TraesCS4B01G243600 chr4B 92.169 166 12 1 1937 2101 477205729 477205894 1.400000e-57 233.0
2 TraesCS4B01G243600 chr4D 95.134 1562 34 13 1 1534 405775477 405773930 0.000000e+00 2425.0
3 TraesCS4B01G243600 chr4D 81.922 437 30 30 1520 1941 405773914 405773512 8.060000e-85 324.0
4 TraesCS4B01G243600 chr4D 86.853 251 15 9 2101 2338 405773521 405773276 4.960000e-67 265.0
5 TraesCS4B01G243600 chr4A 91.844 1741 76 27 163 1857 63544647 63542927 0.000000e+00 2368.0
6 TraesCS4B01G243600 chr4A 84.921 252 16 10 2101 2337 63541226 63540982 3.890000e-58 235.0
7 TraesCS4B01G243600 chr4A 81.579 114 7 9 1 114 63544764 63544665 5.360000e-12 82.4
8 TraesCS4B01G243600 chr4A 89.552 67 0 5 1869 1935 63541282 63541223 6.930000e-11 78.7
9 TraesCS4B01G243600 chr6B 78.486 925 193 6 407 1328 659616779 659615858 3.330000e-168 601.0
10 TraesCS4B01G243600 chr2A 75.070 1067 209 45 403 1439 183551784 183550745 5.930000e-121 444.0
11 TraesCS4B01G243600 chr2B 74.883 1067 211 45 403 1439 231234926 231233887 1.280000e-117 433.0
12 TraesCS4B01G243600 chr2D 74.530 1064 208 49 403 1433 166608405 166609438 2.800000e-109 405.0
13 TraesCS4B01G243600 chr2D 95.122 164 8 0 1939 2102 391461637 391461474 2.310000e-65 259.0
14 TraesCS4B01G243600 chr5B 74.028 1055 226 45 424 1457 400562817 400563844 1.010000e-103 387.0
15 TraesCS4B01G243600 chr5B 93.789 161 10 0 1941 2101 655620546 655620706 2.320000e-60 243.0
16 TraesCS4B01G243600 chr5A 83.972 287 39 7 424 708 442290827 442291108 3.830000e-68 268.0
17 TraesCS4B01G243600 chr5D 83.275 287 41 7 424 708 341075307 341075588 8.290000e-65 257.0
18 TraesCS4B01G243600 chr1B 94.410 161 9 0 1941 2101 17384724 17384564 4.990000e-62 248.0
19 TraesCS4B01G243600 chr1B 93.293 164 11 0 1941 2104 622626589 622626752 2.320000e-60 243.0
20 TraesCS4B01G243600 chr7D 93.827 162 10 0 1940 2101 600764280 600764441 6.460000e-61 244.0
21 TraesCS4B01G243600 chr7D 93.168 161 11 0 1941 2101 627023094 627022934 1.080000e-58 237.0
22 TraesCS4B01G243600 chr3B 93.827 162 10 0 1941 2102 582937468 582937307 6.460000e-61 244.0
23 TraesCS4B01G243600 chr7B 93.827 162 8 2 1940 2101 44617302 44617461 2.320000e-60 243.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G243600 chr4B 504942225 504944563 2338 True 4320.000000 4320 100.000000 1 2339 1 chr4B.!!$R1 2338
1 TraesCS4B01G243600 chr4D 405773276 405775477 2201 True 1004.666667 2425 87.969667 1 2338 3 chr4D.!!$R1 2337
2 TraesCS4B01G243600 chr4A 63540982 63544764 3782 True 691.025000 2368 86.974000 1 2337 4 chr4A.!!$R1 2336
3 TraesCS4B01G243600 chr6B 659615858 659616779 921 True 601.000000 601 78.486000 407 1328 1 chr6B.!!$R1 921
4 TraesCS4B01G243600 chr2A 183550745 183551784 1039 True 444.000000 444 75.070000 403 1439 1 chr2A.!!$R1 1036
5 TraesCS4B01G243600 chr2B 231233887 231234926 1039 True 433.000000 433 74.883000 403 1439 1 chr2B.!!$R1 1036
6 TraesCS4B01G243600 chr2D 166608405 166609438 1033 False 405.000000 405 74.530000 403 1433 1 chr2D.!!$F1 1030
7 TraesCS4B01G243600 chr5B 400562817 400563844 1027 False 387.000000 387 74.028000 424 1457 1 chr5B.!!$F1 1033

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
31 32 0.174389 GGCTCGCATTGTCAGAGAGA 59.826 55.0 9.14 0.0 35.29 3.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1489 1537 0.320374 TTCGTGATTTCACCGCCTCT 59.68 50.0 5.17 0.0 43.66 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.175760 GGTAGGCTCGCATTGTCAGA 59.824 55.000 0.00 0.00 0.00 3.27
28 29 1.565305 GTAGGCTCGCATTGTCAGAG 58.435 55.000 0.00 2.89 35.28 3.35
29 30 1.135139 GTAGGCTCGCATTGTCAGAGA 59.865 52.381 0.00 0.00 34.13 3.10
30 31 0.175302 AGGCTCGCATTGTCAGAGAG 59.825 55.000 9.14 0.00 36.22 3.20
31 32 0.174389 GGCTCGCATTGTCAGAGAGA 59.826 55.000 9.14 0.00 35.29 3.10
114 115 5.344066 ACATCGAAATACTCTACACTGCTG 58.656 41.667 0.00 0.00 0.00 4.41
141 142 4.457603 TCTGTCCCAAAATAATTGACGTGG 59.542 41.667 0.00 0.00 0.00 4.94
158 159 2.089201 GTGGTTATTTTGGGACCGAGG 58.911 52.381 0.00 0.00 36.22 4.63
159 160 1.004979 TGGTTATTTTGGGACCGAGGG 59.995 52.381 0.00 0.00 36.22 4.30
160 161 1.683938 GGTTATTTTGGGACCGAGGGG 60.684 57.143 0.00 0.00 40.11 4.79
182 183 6.183361 GGGGGTATATAGAACTGCAAGGTTTA 60.183 42.308 0.00 0.00 39.30 2.01
196 197 1.817357 GGTTTACTACCACACTGCCC 58.183 55.000 0.00 0.00 46.92 5.36
299 329 6.367422 CGATAAAGCTCAGTATCCATCTTTCC 59.633 42.308 0.00 0.00 0.00 3.13
399 441 1.781025 CGTTGGCGATGTTGTGGTGT 61.781 55.000 0.00 0.00 41.33 4.16
1329 1377 3.895025 CACGGGTGGATCTTGCTG 58.105 61.111 0.00 0.00 0.00 4.41
1350 1398 0.470766 TGCCGTAGTTGACCAGGTTT 59.529 50.000 0.00 0.00 0.00 3.27
1379 1427 0.321210 ATGCCGATGGTCACGTTCAA 60.321 50.000 0.00 0.00 0.00 2.69
1428 1476 4.237809 CTCGTCGGCGCGATCTCA 62.238 66.667 22.24 4.82 40.29 3.27
1477 1525 4.317839 CCACAGTTGTTCGTTTCGTTAGAG 60.318 45.833 0.00 0.00 0.00 2.43
1478 1526 4.266976 CACAGTTGTTCGTTTCGTTAGAGT 59.733 41.667 0.00 0.00 0.00 3.24
1480 1528 5.349543 ACAGTTGTTCGTTTCGTTAGAGTTT 59.650 36.000 0.00 0.00 0.00 2.66
1482 1530 6.739550 CAGTTGTTCGTTTCGTTAGAGTTTTT 59.260 34.615 0.00 0.00 0.00 1.94
1516 1573 3.117434 GTGAAATCACGAAATGGGTCG 57.883 47.619 0.00 0.00 46.54 4.79
1528 1585 1.453155 ATGGGTCGTCAAATGCAGAC 58.547 50.000 0.00 0.00 0.00 3.51
1534 1591 2.257353 GTCAAATGCAGACGGCCTT 58.743 52.632 0.00 0.00 43.89 4.35
1577 1664 3.527507 AGGTTCTCTTCCCTTTTTCCC 57.472 47.619 0.00 0.00 0.00 3.97
1588 1679 2.224523 CCCTTTTTCCCCCTTTTCTTGC 60.225 50.000 0.00 0.00 0.00 4.01
1594 1685 3.662759 TCCCCCTTTTCTTGCGATATT 57.337 42.857 0.00 0.00 0.00 1.28
1595 1686 4.781775 TCCCCCTTTTCTTGCGATATTA 57.218 40.909 0.00 0.00 0.00 0.98
1596 1687 4.457466 TCCCCCTTTTCTTGCGATATTAC 58.543 43.478 0.00 0.00 0.00 1.89
1597 1688 4.165372 TCCCCCTTTTCTTGCGATATTACT 59.835 41.667 0.00 0.00 0.00 2.24
1598 1689 5.367352 TCCCCCTTTTCTTGCGATATTACTA 59.633 40.000 0.00 0.00 0.00 1.82
1599 1690 5.701290 CCCCCTTTTCTTGCGATATTACTAG 59.299 44.000 0.00 0.00 0.00 2.57
1600 1691 5.179555 CCCCTTTTCTTGCGATATTACTAGC 59.820 44.000 0.00 0.00 0.00 3.42
1601 1692 5.758296 CCCTTTTCTTGCGATATTACTAGCA 59.242 40.000 0.00 0.00 37.89 3.49
1602 1693 6.428159 CCCTTTTCTTGCGATATTACTAGCAT 59.572 38.462 0.00 0.00 39.50 3.79
1603 1694 7.293745 CCTTTTCTTGCGATATTACTAGCATG 58.706 38.462 0.00 0.00 39.50 4.06
1604 1695 7.041780 CCTTTTCTTGCGATATTACTAGCATGT 60.042 37.037 0.00 0.00 39.50 3.21
1605 1696 6.769608 TTCTTGCGATATTACTAGCATGTG 57.230 37.500 0.00 0.00 39.50 3.21
1606 1697 6.084326 TCTTGCGATATTACTAGCATGTGA 57.916 37.500 0.00 0.00 39.50 3.58
1607 1698 5.920840 TCTTGCGATATTACTAGCATGTGAC 59.079 40.000 0.00 0.00 39.50 3.67
1608 1699 5.453567 TGCGATATTACTAGCATGTGACT 57.546 39.130 0.00 0.00 34.39 3.41
1609 1700 6.569179 TGCGATATTACTAGCATGTGACTA 57.431 37.500 0.00 0.00 34.39 2.59
1610 1701 6.379386 TGCGATATTACTAGCATGTGACTAC 58.621 40.000 0.00 0.00 34.39 2.73
1645 1736 2.216898 CCTAGCATGCTTTCCTACTGC 58.783 52.381 28.02 0.00 0.00 4.40
1719 1824 4.450419 CACCATCGGAATCTCTTAATCAGC 59.550 45.833 0.00 0.00 0.00 4.26
1737 1842 0.179108 GCGGGTCTAATCAGAAGCGT 60.179 55.000 0.00 0.00 30.85 5.07
1790 1898 3.128852 TGATCTACTCCTACTCGAGCC 57.871 52.381 13.61 0.00 32.79 4.70
1831 1940 0.679505 TGTCTTGCCTGCTTCGTACT 59.320 50.000 0.00 0.00 0.00 2.73
1832 1941 1.890489 TGTCTTGCCTGCTTCGTACTA 59.110 47.619 0.00 0.00 0.00 1.82
1833 1942 2.260481 GTCTTGCCTGCTTCGTACTAC 58.740 52.381 0.00 0.00 0.00 2.73
1852 1963 7.478978 CGTACTACATAATTGAGTCTAGATGCG 59.521 40.741 0.00 0.00 0.00 4.73
1864 1975 8.041829 TGAGTCTAGATGCGTTTATATACTCC 57.958 38.462 0.00 0.00 30.96 3.85
1865 1976 7.883833 TGAGTCTAGATGCGTTTATATACTCCT 59.116 37.037 0.00 0.00 30.96 3.69
1866 1977 9.381033 GAGTCTAGATGCGTTTATATACTCCTA 57.619 37.037 0.00 0.00 0.00 2.94
1867 1978 9.908747 AGTCTAGATGCGTTTATATACTCCTAT 57.091 33.333 0.00 0.00 0.00 2.57
1943 3687 3.559238 AATTTGCAAACTGACGCTAGG 57.441 42.857 15.41 0.00 0.00 3.02
1944 3688 1.234821 TTTGCAAACTGACGCTAGGG 58.765 50.000 8.05 5.05 0.00 3.53
1945 3689 0.394938 TTGCAAACTGACGCTAGGGA 59.605 50.000 14.59 0.00 0.00 4.20
1946 3690 0.613260 TGCAAACTGACGCTAGGGAT 59.387 50.000 14.59 0.00 0.00 3.85
1947 3691 1.009829 GCAAACTGACGCTAGGGATG 58.990 55.000 14.59 5.48 0.00 3.51
1948 3692 1.676014 GCAAACTGACGCTAGGGATGT 60.676 52.381 14.59 6.09 0.00 3.06
1949 3693 2.418197 GCAAACTGACGCTAGGGATGTA 60.418 50.000 14.59 0.00 0.00 2.29
1950 3694 3.448686 CAAACTGACGCTAGGGATGTAG 58.551 50.000 14.59 8.04 0.00 2.74
1951 3695 1.693627 ACTGACGCTAGGGATGTAGG 58.306 55.000 14.59 0.47 0.00 3.18
1952 3696 1.063867 ACTGACGCTAGGGATGTAGGT 60.064 52.381 14.59 1.05 0.00 3.08
1953 3697 1.338337 CTGACGCTAGGGATGTAGGTG 59.662 57.143 14.59 0.00 0.00 4.00
1954 3698 0.674534 GACGCTAGGGATGTAGGTGG 59.325 60.000 14.59 0.00 0.00 4.61
1955 3699 1.367840 CGCTAGGGATGTAGGTGGC 59.632 63.158 0.00 0.00 0.00 5.01
1956 3700 1.399744 CGCTAGGGATGTAGGTGGCA 61.400 60.000 0.00 0.00 0.00 4.92
1957 3701 0.837272 GCTAGGGATGTAGGTGGCAA 59.163 55.000 0.00 0.00 0.00 4.52
1958 3702 1.211949 GCTAGGGATGTAGGTGGCAAA 59.788 52.381 0.00 0.00 0.00 3.68
1959 3703 2.158608 GCTAGGGATGTAGGTGGCAAAT 60.159 50.000 0.00 0.00 0.00 2.32
1960 3704 3.072476 GCTAGGGATGTAGGTGGCAAATA 59.928 47.826 0.00 0.00 0.00 1.40
1961 3705 4.445735 GCTAGGGATGTAGGTGGCAAATAA 60.446 45.833 0.00 0.00 0.00 1.40
1962 3706 4.601406 AGGGATGTAGGTGGCAAATAAA 57.399 40.909 0.00 0.00 0.00 1.40
1963 3707 5.142806 AGGGATGTAGGTGGCAAATAAAT 57.857 39.130 0.00 0.00 0.00 1.40
1964 3708 4.895297 AGGGATGTAGGTGGCAAATAAATG 59.105 41.667 0.00 0.00 0.00 2.32
1965 3709 4.039124 GGGATGTAGGTGGCAAATAAATGG 59.961 45.833 0.00 0.00 0.00 3.16
1966 3710 4.501400 GGATGTAGGTGGCAAATAAATGGC 60.501 45.833 0.00 0.00 45.44 4.40
1972 3716 1.921243 GGCAAATAAATGGCGTCCAC 58.079 50.000 0.50 0.00 35.80 4.02
1973 3717 1.203523 GGCAAATAAATGGCGTCCACA 59.796 47.619 0.50 0.00 35.80 4.17
1974 3718 2.353208 GGCAAATAAATGGCGTCCACAA 60.353 45.455 0.50 0.00 35.80 3.33
1975 3719 3.520569 GCAAATAAATGGCGTCCACAAT 58.479 40.909 0.50 0.00 35.80 2.71
1976 3720 3.932089 GCAAATAAATGGCGTCCACAATT 59.068 39.130 0.50 1.01 35.80 2.32
1977 3721 4.032786 GCAAATAAATGGCGTCCACAATTC 59.967 41.667 0.50 0.00 35.80 2.17
1978 3722 4.385358 AATAAATGGCGTCCACAATTCC 57.615 40.909 0.50 0.00 35.80 3.01
1979 3723 0.525761 AAATGGCGTCCACAATTCCG 59.474 50.000 0.50 0.00 35.80 4.30
1980 3724 0.608035 AATGGCGTCCACAATTCCGT 60.608 50.000 0.50 0.00 35.80 4.69
1981 3725 0.608035 ATGGCGTCCACAATTCCGTT 60.608 50.000 0.50 0.00 35.80 4.44
1982 3726 0.820074 TGGCGTCCACAATTCCGTTT 60.820 50.000 0.00 0.00 0.00 3.60
1983 3727 1.158434 GGCGTCCACAATTCCGTTTA 58.842 50.000 0.00 0.00 0.00 2.01
1984 3728 1.129811 GGCGTCCACAATTCCGTTTAG 59.870 52.381 0.00 0.00 0.00 1.85
1985 3729 1.802365 GCGTCCACAATTCCGTTTAGT 59.198 47.619 0.00 0.00 0.00 2.24
1986 3730 2.224784 GCGTCCACAATTCCGTTTAGTT 59.775 45.455 0.00 0.00 0.00 2.24
1987 3731 3.432933 GCGTCCACAATTCCGTTTAGTTA 59.567 43.478 0.00 0.00 0.00 2.24
1988 3732 4.435121 GCGTCCACAATTCCGTTTAGTTAG 60.435 45.833 0.00 0.00 0.00 2.34
1989 3733 4.687483 CGTCCACAATTCCGTTTAGTTAGT 59.313 41.667 0.00 0.00 0.00 2.24
1990 3734 5.178067 CGTCCACAATTCCGTTTAGTTAGTT 59.822 40.000 0.00 0.00 0.00 2.24
1991 3735 6.293027 CGTCCACAATTCCGTTTAGTTAGTTT 60.293 38.462 0.00 0.00 0.00 2.66
1992 3736 7.420002 GTCCACAATTCCGTTTAGTTAGTTTT 58.580 34.615 0.00 0.00 0.00 2.43
1993 3737 7.916977 GTCCACAATTCCGTTTAGTTAGTTTTT 59.083 33.333 0.00 0.00 0.00 1.94
1994 3738 7.916450 TCCACAATTCCGTTTAGTTAGTTTTTG 59.084 33.333 0.00 0.00 0.00 2.44
1995 3739 7.306341 CCACAATTCCGTTTAGTTAGTTTTTGC 60.306 37.037 0.00 0.00 0.00 3.68
1996 3740 7.434013 CACAATTCCGTTTAGTTAGTTTTTGCT 59.566 33.333 0.00 0.00 0.00 3.91
1997 3741 8.623030 ACAATTCCGTTTAGTTAGTTTTTGCTA 58.377 29.630 0.00 0.00 0.00 3.49
1998 3742 9.113876 CAATTCCGTTTAGTTAGTTTTTGCTAG 57.886 33.333 0.00 0.00 0.00 3.42
1999 3743 6.232139 TCCGTTTAGTTAGTTTTTGCTAGC 57.768 37.500 8.10 8.10 0.00 3.42
2000 3744 5.993441 TCCGTTTAGTTAGTTTTTGCTAGCT 59.007 36.000 17.23 0.00 36.65 3.32
2001 3745 6.484308 TCCGTTTAGTTAGTTTTTGCTAGCTT 59.516 34.615 17.23 0.00 34.92 3.74
2002 3746 6.577427 CCGTTTAGTTAGTTTTTGCTAGCTTG 59.423 38.462 17.23 0.00 34.92 4.01
2003 3747 7.349711 CGTTTAGTTAGTTTTTGCTAGCTTGA 58.650 34.615 17.23 0.00 34.92 3.02
2004 3748 8.015658 CGTTTAGTTAGTTTTTGCTAGCTTGAT 58.984 33.333 17.23 0.00 34.92 2.57
2007 3751 9.720769 TTAGTTAGTTTTTGCTAGCTTGATACT 57.279 29.630 17.23 14.16 34.92 2.12
2008 3752 8.622948 AGTTAGTTTTTGCTAGCTTGATACTT 57.377 30.769 17.23 0.00 30.04 2.24
2009 3753 8.722394 AGTTAGTTTTTGCTAGCTTGATACTTC 58.278 33.333 17.23 9.29 30.04 3.01
2010 3754 8.504005 GTTAGTTTTTGCTAGCTTGATACTTCA 58.496 33.333 17.23 1.76 0.00 3.02
2011 3755 7.693969 AGTTTTTGCTAGCTTGATACTTCAT 57.306 32.000 17.23 0.00 0.00 2.57
2012 3756 8.115490 AGTTTTTGCTAGCTTGATACTTCATT 57.885 30.769 17.23 0.00 0.00 2.57
2013 3757 8.579863 AGTTTTTGCTAGCTTGATACTTCATTT 58.420 29.630 17.23 0.00 0.00 2.32
2014 3758 9.196552 GTTTTTGCTAGCTTGATACTTCATTTT 57.803 29.630 17.23 0.00 0.00 1.82
2015 3759 8.970691 TTTTGCTAGCTTGATACTTCATTTTC 57.029 30.769 17.23 0.00 0.00 2.29
2016 3760 7.928307 TTGCTAGCTTGATACTTCATTTTCT 57.072 32.000 17.23 0.00 0.00 2.52
2017 3761 7.928307 TGCTAGCTTGATACTTCATTTTCTT 57.072 32.000 17.23 0.00 0.00 2.52
2018 3762 7.978982 TGCTAGCTTGATACTTCATTTTCTTC 58.021 34.615 17.23 0.00 0.00 2.87
2019 3763 7.607607 TGCTAGCTTGATACTTCATTTTCTTCA 59.392 33.333 17.23 0.00 0.00 3.02
2020 3764 8.454106 GCTAGCTTGATACTTCATTTTCTTCAA 58.546 33.333 7.70 0.00 0.00 2.69
2023 3767 8.632679 AGCTTGATACTTCATTTTCTTCAAACA 58.367 29.630 0.00 0.00 0.00 2.83
2024 3768 9.248291 GCTTGATACTTCATTTTCTTCAAACAA 57.752 29.630 0.00 0.00 0.00 2.83
2080 3824 7.571080 AGTGAACTTTAAACGGGATTAAACA 57.429 32.000 0.00 0.00 32.77 2.83
2081 3825 7.645402 AGTGAACTTTAAACGGGATTAAACAG 58.355 34.615 0.00 0.00 32.77 3.16
2082 3826 6.859508 GTGAACTTTAAACGGGATTAAACAGG 59.140 38.462 0.00 0.00 32.77 4.00
2083 3827 6.771749 TGAACTTTAAACGGGATTAAACAGGA 59.228 34.615 0.00 0.00 32.77 3.86
2084 3828 6.564709 ACTTTAAACGGGATTAAACAGGAC 57.435 37.500 0.00 0.00 32.77 3.85
2085 3829 5.474532 ACTTTAAACGGGATTAAACAGGACC 59.525 40.000 0.00 0.00 32.77 4.46
2086 3830 2.502142 AACGGGATTAAACAGGACCC 57.498 50.000 0.00 0.00 37.42 4.46
2088 3832 3.489391 GGGATTAAACAGGACCCGG 57.511 57.895 0.00 0.00 0.00 5.73
2089 3833 0.622136 GGGATTAAACAGGACCCGGT 59.378 55.000 0.00 0.00 0.00 5.28
2090 3834 1.005097 GGGATTAAACAGGACCCGGTT 59.995 52.381 0.00 0.00 35.99 4.44
2091 3835 2.089201 GGATTAAACAGGACCCGGTTG 58.911 52.381 0.00 0.00 34.79 3.77
2092 3836 2.290450 GGATTAAACAGGACCCGGTTGA 60.290 50.000 0.00 0.00 34.79 3.18
2093 3837 2.259266 TTAAACAGGACCCGGTTGAC 57.741 50.000 0.00 0.00 34.79 3.18
2094 3838 1.129917 TAAACAGGACCCGGTTGACA 58.870 50.000 0.00 0.00 34.79 3.58
2095 3839 0.476771 AAACAGGACCCGGTTGACAT 59.523 50.000 0.00 0.00 34.79 3.06
2096 3840 0.036306 AACAGGACCCGGTTGACATC 59.964 55.000 0.00 0.00 33.42 3.06
2097 3841 1.078426 CAGGACCCGGTTGACATCC 60.078 63.158 0.00 0.00 0.00 3.51
2098 3842 2.271173 GGACCCGGTTGACATCCC 59.729 66.667 0.00 0.00 0.00 3.85
2099 3843 2.298661 GGACCCGGTTGACATCCCT 61.299 63.158 0.00 0.00 0.00 4.20
2100 3844 0.979187 GGACCCGGTTGACATCCCTA 60.979 60.000 0.00 0.00 0.00 3.53
2101 3845 0.906775 GACCCGGTTGACATCCCTAA 59.093 55.000 0.00 0.00 0.00 2.69
2102 3846 0.616891 ACCCGGTTGACATCCCTAAC 59.383 55.000 0.00 0.00 0.00 2.34
2103 3847 0.909623 CCCGGTTGACATCCCTAACT 59.090 55.000 0.00 0.00 0.00 2.24
2104 3848 1.406887 CCCGGTTGACATCCCTAACTG 60.407 57.143 0.00 0.00 0.00 3.16
2105 3849 1.553248 CCGGTTGACATCCCTAACTGA 59.447 52.381 0.00 0.00 33.58 3.41
2106 3850 2.618053 CGGTTGACATCCCTAACTGAC 58.382 52.381 0.00 0.00 33.58 3.51
2185 3929 5.460646 TCTTGGCATTTTCAATCGAGAAAC 58.539 37.500 0.00 0.00 37.24 2.78
2195 3939 0.396695 ATCGAGAAACCTCCCCGCTA 60.397 55.000 0.00 0.00 0.00 4.26
2196 3940 1.141234 CGAGAAACCTCCCCGCTAC 59.859 63.158 0.00 0.00 0.00 3.58
2206 3952 2.487532 CCCCGCTACGAGGTACAGG 61.488 68.421 0.00 0.00 0.00 4.00
2249 4008 4.772046 TTTTTCAGTGTTCGACGAAGAG 57.228 40.909 11.25 0.00 0.00 2.85
2302 4061 6.873076 GCATCAAAGATACAATTTTGGTCCAA 59.127 34.615 0.00 0.00 35.52 3.53
2303 4062 7.148590 GCATCAAAGATACAATTTTGGTCCAAC 60.149 37.037 2.98 0.00 35.52 3.77
2304 4063 7.353414 TCAAAGATACAATTTTGGTCCAACA 57.647 32.000 2.98 0.00 35.52 3.33
2305 4064 7.786030 TCAAAGATACAATTTTGGTCCAACAA 58.214 30.769 2.98 2.92 35.52 2.83
2306 4065 7.925483 TCAAAGATACAATTTTGGTCCAACAAG 59.075 33.333 2.98 0.00 35.52 3.16
2307 4066 5.783111 AGATACAATTTTGGTCCAACAAGC 58.217 37.500 2.98 0.00 0.00 4.01
2308 4067 3.902881 ACAATTTTGGTCCAACAAGCA 57.097 38.095 2.98 0.00 0.00 3.91
2309 4068 4.420522 ACAATTTTGGTCCAACAAGCAT 57.579 36.364 2.98 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 2.964209 TGGAAGTTGGTCTCTGTCTCT 58.036 47.619 0.00 0.00 0.00 3.10
28 29 3.753294 TTGGAAGTTGGTCTCTGTCTC 57.247 47.619 0.00 0.00 0.00 3.36
29 30 3.199946 TGTTTGGAAGTTGGTCTCTGTCT 59.800 43.478 0.00 0.00 0.00 3.41
30 31 3.541632 TGTTTGGAAGTTGGTCTCTGTC 58.458 45.455 0.00 0.00 0.00 3.51
31 32 3.644966 TGTTTGGAAGTTGGTCTCTGT 57.355 42.857 0.00 0.00 0.00 3.41
32 33 4.981806 TTTGTTTGGAAGTTGGTCTCTG 57.018 40.909 0.00 0.00 0.00 3.35
33 34 6.486993 GTCTATTTGTTTGGAAGTTGGTCTCT 59.513 38.462 0.00 0.00 0.00 3.10
34 35 6.262273 TGTCTATTTGTTTGGAAGTTGGTCTC 59.738 38.462 0.00 0.00 0.00 3.36
94 95 3.428999 GGCAGCAGTGTAGAGTATTTCGA 60.429 47.826 0.00 0.00 0.00 3.71
114 115 4.023291 TCAATTATTTTGGGACAGAGGGC 58.977 43.478 0.00 0.00 42.39 5.19
141 142 1.683938 CCCCCTCGGTCCCAAAATAAC 60.684 57.143 0.00 0.00 0.00 1.89
158 159 4.976540 ACCTTGCAGTTCTATATACCCC 57.023 45.455 0.00 0.00 0.00 4.95
159 160 7.506971 AGTAAACCTTGCAGTTCTATATACCC 58.493 38.462 0.00 0.00 0.00 3.69
160 161 9.473640 GTAGTAAACCTTGCAGTTCTATATACC 57.526 37.037 0.00 0.00 0.00 2.73
182 183 2.923035 AGCGGGCAGTGTGGTAGT 60.923 61.111 0.00 0.00 0.00 2.73
196 197 2.507102 ATGCGACGAGGAACAGCG 60.507 61.111 0.00 0.00 34.72 5.18
299 329 4.299155 TGCACAACTCGACTTAGAAAGAG 58.701 43.478 0.00 0.00 36.83 2.85
1284 1329 4.731612 CTGTCGCTGTCGCTGGCT 62.732 66.667 0.00 0.00 35.26 4.75
1329 1377 1.375523 CCTGGTCAACTACGGCACC 60.376 63.158 0.00 0.00 0.00 5.01
1350 1398 1.815003 CATCGGCATCCTGTTCGCA 60.815 57.895 0.00 0.00 0.00 5.10
1379 1427 1.271597 GGCTCAACATCCTGTTCCAGT 60.272 52.381 0.00 0.00 38.77 4.00
1428 1476 1.481056 CCGTTCCCCTGTTCCTGTCT 61.481 60.000 0.00 0.00 0.00 3.41
1480 1528 7.309920 GTGATTTCACCGCCTCTTAAATAAAA 58.690 34.615 0.00 0.00 40.85 1.52
1482 1530 5.064198 CGTGATTTCACCGCCTCTTAAATAA 59.936 40.000 5.17 0.00 43.66 1.40
1485 1533 2.739913 CGTGATTTCACCGCCTCTTAAA 59.260 45.455 5.17 0.00 43.66 1.52
1487 1535 1.546923 TCGTGATTTCACCGCCTCTTA 59.453 47.619 5.17 0.00 43.66 2.10
1489 1537 0.320374 TTCGTGATTTCACCGCCTCT 59.680 50.000 5.17 0.00 43.66 3.69
1490 1538 1.153353 TTTCGTGATTTCACCGCCTC 58.847 50.000 5.17 0.00 43.66 4.70
1493 1541 1.467374 CCCATTTCGTGATTTCACCGC 60.467 52.381 5.17 0.00 43.66 5.68
1494 1542 1.810151 ACCCATTTCGTGATTTCACCG 59.190 47.619 5.17 1.54 43.66 4.94
1495 1543 2.159572 CGACCCATTTCGTGATTTCACC 60.160 50.000 5.17 0.00 43.66 4.02
1516 1573 1.448985 TAAGGCCGTCTGCATTTGAC 58.551 50.000 0.00 0.00 42.23 3.18
1588 1679 5.508573 GCGTAGTCACATGCTAGTAATATCG 59.491 44.000 0.00 0.00 0.00 2.92
1594 1685 5.823209 TTTAGCGTAGTCACATGCTAGTA 57.177 39.130 0.00 0.00 42.44 1.82
1595 1686 4.713824 TTTAGCGTAGTCACATGCTAGT 57.286 40.909 0.00 0.00 42.44 2.57
1596 1687 4.862574 TGTTTTAGCGTAGTCACATGCTAG 59.137 41.667 0.00 0.00 42.44 3.42
1597 1688 4.811908 TGTTTTAGCGTAGTCACATGCTA 58.188 39.130 0.00 0.00 41.09 3.49
1598 1689 3.659786 TGTTTTAGCGTAGTCACATGCT 58.340 40.909 0.00 0.00 43.21 3.79
1599 1690 4.398549 TTGTTTTAGCGTAGTCACATGC 57.601 40.909 0.00 0.00 0.00 4.06
1600 1691 6.519761 GTGATTTGTTTTAGCGTAGTCACATG 59.480 38.462 0.00 0.00 34.98 3.21
1601 1692 6.348213 GGTGATTTGTTTTAGCGTAGTCACAT 60.348 38.462 0.00 0.00 36.18 3.21
1602 1693 5.049954 GGTGATTTGTTTTAGCGTAGTCACA 60.050 40.000 0.00 0.00 36.18 3.58
1603 1694 5.178809 AGGTGATTTGTTTTAGCGTAGTCAC 59.821 40.000 0.00 0.00 34.32 3.67
1604 1695 5.302360 AGGTGATTTGTTTTAGCGTAGTCA 58.698 37.500 0.00 0.00 0.00 3.41
1605 1696 5.857822 AGGTGATTTGTTTTAGCGTAGTC 57.142 39.130 0.00 0.00 0.00 2.59
1606 1697 5.350640 GCTAGGTGATTTGTTTTAGCGTAGT 59.649 40.000 0.00 0.00 0.00 2.73
1607 1698 5.350365 TGCTAGGTGATTTGTTTTAGCGTAG 59.650 40.000 0.00 0.00 37.04 3.51
1608 1699 5.239351 TGCTAGGTGATTTGTTTTAGCGTA 58.761 37.500 0.00 0.00 37.04 4.42
1609 1700 4.069304 TGCTAGGTGATTTGTTTTAGCGT 58.931 39.130 0.00 0.00 37.04 5.07
1610 1701 4.678509 TGCTAGGTGATTTGTTTTAGCG 57.321 40.909 0.00 0.00 37.04 4.26
1645 1736 4.062293 TGTACGGTCACTGATTTTCTTGG 58.938 43.478 0.00 0.00 0.00 3.61
1719 1824 1.927174 CAACGCTTCTGATTAGACCCG 59.073 52.381 4.93 4.93 34.59 5.28
1811 1920 1.071605 GTACGAAGCAGGCAAGACAG 58.928 55.000 0.00 0.00 0.00 3.51
1897 3641 3.908382 CACACACTAACCGACTAACGTAC 59.092 47.826 0.00 0.00 40.78 3.67
1898 3642 3.609175 GCACACACTAACCGACTAACGTA 60.609 47.826 0.00 0.00 40.78 3.57
1899 3643 2.859806 GCACACACTAACCGACTAACGT 60.860 50.000 0.00 0.00 40.78 3.99
1900 3644 1.717645 GCACACACTAACCGACTAACG 59.282 52.381 0.00 0.00 42.18 3.18
1901 3645 2.746269 TGCACACACTAACCGACTAAC 58.254 47.619 0.00 0.00 0.00 2.34
1902 3646 3.671008 ATGCACACACTAACCGACTAA 57.329 42.857 0.00 0.00 0.00 2.24
1903 3647 4.787260 TTATGCACACACTAACCGACTA 57.213 40.909 0.00 0.00 0.00 2.59
1904 3648 3.671008 TTATGCACACACTAACCGACT 57.329 42.857 0.00 0.00 0.00 4.18
1905 3649 4.939509 AATTATGCACACACTAACCGAC 57.060 40.909 0.00 0.00 0.00 4.79
1906 3650 5.289917 CAAATTATGCACACACTAACCGA 57.710 39.130 0.00 0.00 0.00 4.69
1935 3679 0.674534 CCACCTACATCCCTAGCGTC 59.325 60.000 0.00 0.00 0.00 5.19
1937 3681 1.367840 GCCACCTACATCCCTAGCG 59.632 63.158 0.00 0.00 0.00 4.26
1938 3682 0.837272 TTGCCACCTACATCCCTAGC 59.163 55.000 0.00 0.00 0.00 3.42
1939 3683 3.864789 ATTTGCCACCTACATCCCTAG 57.135 47.619 0.00 0.00 0.00 3.02
1940 3684 5.718801 TTTATTTGCCACCTACATCCCTA 57.281 39.130 0.00 0.00 0.00 3.53
1941 3685 4.601406 TTTATTTGCCACCTACATCCCT 57.399 40.909 0.00 0.00 0.00 4.20
1942 3686 4.039124 CCATTTATTTGCCACCTACATCCC 59.961 45.833 0.00 0.00 0.00 3.85
1943 3687 4.501400 GCCATTTATTTGCCACCTACATCC 60.501 45.833 0.00 0.00 0.00 3.51
1944 3688 4.620982 GCCATTTATTTGCCACCTACATC 58.379 43.478 0.00 0.00 0.00 3.06
1945 3689 3.068024 CGCCATTTATTTGCCACCTACAT 59.932 43.478 0.00 0.00 0.00 2.29
1946 3690 2.425312 CGCCATTTATTTGCCACCTACA 59.575 45.455 0.00 0.00 0.00 2.74
1947 3691 2.425668 ACGCCATTTATTTGCCACCTAC 59.574 45.455 0.00 0.00 0.00 3.18
1948 3692 2.685897 GACGCCATTTATTTGCCACCTA 59.314 45.455 0.00 0.00 0.00 3.08
1949 3693 1.476488 GACGCCATTTATTTGCCACCT 59.524 47.619 0.00 0.00 0.00 4.00
1950 3694 1.470805 GGACGCCATTTATTTGCCACC 60.471 52.381 0.00 0.00 0.00 4.61
1951 3695 1.203523 TGGACGCCATTTATTTGCCAC 59.796 47.619 0.00 0.00 0.00 5.01
1952 3696 1.203523 GTGGACGCCATTTATTTGCCA 59.796 47.619 1.90 0.00 35.28 4.92
1953 3697 1.203523 TGTGGACGCCATTTATTTGCC 59.796 47.619 1.90 0.00 35.28 4.52
1954 3698 2.645730 TGTGGACGCCATTTATTTGC 57.354 45.000 1.90 0.00 35.28 3.68
1955 3699 4.566360 GGAATTGTGGACGCCATTTATTTG 59.434 41.667 1.90 0.00 35.28 2.32
1956 3700 4.676723 CGGAATTGTGGACGCCATTTATTT 60.677 41.667 1.90 0.00 35.28 1.40
1957 3701 3.181491 CGGAATTGTGGACGCCATTTATT 60.181 43.478 1.90 3.31 35.28 1.40
1958 3702 2.357637 CGGAATTGTGGACGCCATTTAT 59.642 45.455 1.90 0.00 35.28 1.40
1959 3703 1.740585 CGGAATTGTGGACGCCATTTA 59.259 47.619 1.90 0.00 35.28 1.40
1960 3704 0.525761 CGGAATTGTGGACGCCATTT 59.474 50.000 1.90 0.00 35.28 2.32
1961 3705 0.608035 ACGGAATTGTGGACGCCATT 60.608 50.000 1.90 0.00 35.28 3.16
1962 3706 0.608035 AACGGAATTGTGGACGCCAT 60.608 50.000 1.90 0.00 35.28 4.40
1963 3707 0.820074 AAACGGAATTGTGGACGCCA 60.820 50.000 0.00 0.00 0.00 5.69
1964 3708 1.129811 CTAAACGGAATTGTGGACGCC 59.870 52.381 0.00 0.00 0.00 5.68
1965 3709 1.802365 ACTAAACGGAATTGTGGACGC 59.198 47.619 0.00 0.00 0.00 5.19
1966 3710 4.687483 ACTAACTAAACGGAATTGTGGACG 59.313 41.667 0.00 0.00 0.00 4.79
1967 3711 6.549912 AACTAACTAAACGGAATTGTGGAC 57.450 37.500 0.00 0.00 0.00 4.02
1968 3712 7.571080 AAAACTAACTAAACGGAATTGTGGA 57.429 32.000 0.00 0.00 0.00 4.02
1969 3713 7.306341 GCAAAAACTAACTAAACGGAATTGTGG 60.306 37.037 0.00 0.00 0.00 4.17
1970 3714 7.434013 AGCAAAAACTAACTAAACGGAATTGTG 59.566 33.333 0.00 0.00 0.00 3.33
1971 3715 7.485810 AGCAAAAACTAACTAAACGGAATTGT 58.514 30.769 0.00 0.00 0.00 2.71
1972 3716 7.924103 AGCAAAAACTAACTAAACGGAATTG 57.076 32.000 0.00 0.00 0.00 2.32
1973 3717 7.806487 GCTAGCAAAAACTAACTAAACGGAATT 59.194 33.333 10.63 0.00 0.00 2.17
1974 3718 7.174426 AGCTAGCAAAAACTAACTAAACGGAAT 59.826 33.333 18.83 0.00 0.00 3.01
1975 3719 6.484308 AGCTAGCAAAAACTAACTAAACGGAA 59.516 34.615 18.83 0.00 0.00 4.30
1976 3720 5.993441 AGCTAGCAAAAACTAACTAAACGGA 59.007 36.000 18.83 0.00 0.00 4.69
1977 3721 6.237313 AGCTAGCAAAAACTAACTAAACGG 57.763 37.500 18.83 0.00 0.00 4.44
1978 3722 7.349711 TCAAGCTAGCAAAAACTAACTAAACG 58.650 34.615 18.83 0.00 0.00 3.60
1981 3725 9.720769 AGTATCAAGCTAGCAAAAACTAACTAA 57.279 29.630 18.83 0.00 0.00 2.24
1982 3726 9.720769 AAGTATCAAGCTAGCAAAAACTAACTA 57.279 29.630 18.83 0.00 0.00 2.24
1983 3727 8.622948 AAGTATCAAGCTAGCAAAAACTAACT 57.377 30.769 18.83 6.79 0.00 2.24
1984 3728 8.504005 TGAAGTATCAAGCTAGCAAAAACTAAC 58.496 33.333 18.83 10.96 30.99 2.34
1985 3729 8.615878 TGAAGTATCAAGCTAGCAAAAACTAA 57.384 30.769 18.83 3.55 30.99 2.24
1986 3730 8.792830 ATGAAGTATCAAGCTAGCAAAAACTA 57.207 30.769 18.83 0.46 39.49 2.24
1987 3731 7.693969 ATGAAGTATCAAGCTAGCAAAAACT 57.306 32.000 18.83 10.39 39.49 2.66
1988 3732 8.748380 AAATGAAGTATCAAGCTAGCAAAAAC 57.252 30.769 18.83 8.21 39.49 2.43
1989 3733 9.410556 GAAAATGAAGTATCAAGCTAGCAAAAA 57.589 29.630 18.83 0.00 39.49 1.94
1990 3734 8.796475 AGAAAATGAAGTATCAAGCTAGCAAAA 58.204 29.630 18.83 1.00 39.49 2.44
1991 3735 8.340618 AGAAAATGAAGTATCAAGCTAGCAAA 57.659 30.769 18.83 1.41 39.49 3.68
1992 3736 7.928307 AGAAAATGAAGTATCAAGCTAGCAA 57.072 32.000 18.83 1.82 39.49 3.91
1993 3737 7.607607 TGAAGAAAATGAAGTATCAAGCTAGCA 59.392 33.333 18.83 0.00 39.49 3.49
1994 3738 7.978982 TGAAGAAAATGAAGTATCAAGCTAGC 58.021 34.615 6.62 6.62 39.49 3.42
1997 3741 8.632679 TGTTTGAAGAAAATGAAGTATCAAGCT 58.367 29.630 0.00 0.00 39.49 3.74
1998 3742 8.801715 TGTTTGAAGAAAATGAAGTATCAAGC 57.198 30.769 0.00 0.00 39.49 4.01
2054 3798 9.118300 TGTTTAATCCCGTTTAAAGTTCACTTA 57.882 29.630 0.00 0.00 34.61 2.24
2055 3799 7.998580 TGTTTAATCCCGTTTAAAGTTCACTT 58.001 30.769 0.00 0.00 37.91 3.16
2056 3800 7.255346 CCTGTTTAATCCCGTTTAAAGTTCACT 60.255 37.037 0.00 0.00 33.07 3.41
2057 3801 6.859508 CCTGTTTAATCCCGTTTAAAGTTCAC 59.140 38.462 0.00 0.00 33.07 3.18
2058 3802 6.771749 TCCTGTTTAATCCCGTTTAAAGTTCA 59.228 34.615 0.00 0.00 33.07 3.18
2059 3803 7.080099 GTCCTGTTTAATCCCGTTTAAAGTTC 58.920 38.462 0.00 0.00 33.07 3.01
2060 3804 6.016024 GGTCCTGTTTAATCCCGTTTAAAGTT 60.016 38.462 0.00 0.00 33.07 2.66
2061 3805 5.474532 GGTCCTGTTTAATCCCGTTTAAAGT 59.525 40.000 0.00 0.00 33.07 2.66
2062 3806 5.106038 GGGTCCTGTTTAATCCCGTTTAAAG 60.106 44.000 0.00 0.00 33.07 1.85
2063 3807 4.766373 GGGTCCTGTTTAATCCCGTTTAAA 59.234 41.667 0.00 0.00 0.00 1.52
2064 3808 4.334552 GGGTCCTGTTTAATCCCGTTTAA 58.665 43.478 0.00 0.00 0.00 1.52
2065 3809 3.954200 GGGTCCTGTTTAATCCCGTTTA 58.046 45.455 0.00 0.00 0.00 2.01
2066 3810 2.799017 GGGTCCTGTTTAATCCCGTTT 58.201 47.619 0.00 0.00 0.00 3.60
2067 3811 2.502142 GGGTCCTGTTTAATCCCGTT 57.498 50.000 0.00 0.00 0.00 4.44
2070 3814 0.622136 ACCGGGTCCTGTTTAATCCC 59.378 55.000 6.32 0.00 35.22 3.85
2071 3815 2.089201 CAACCGGGTCCTGTTTAATCC 58.911 52.381 6.32 0.00 0.00 3.01
2072 3816 2.745821 GTCAACCGGGTCCTGTTTAATC 59.254 50.000 6.32 0.00 0.00 1.75
2073 3817 2.106857 TGTCAACCGGGTCCTGTTTAAT 59.893 45.455 6.32 0.00 0.00 1.40
2074 3818 1.489649 TGTCAACCGGGTCCTGTTTAA 59.510 47.619 6.32 0.00 0.00 1.52
2075 3819 1.129917 TGTCAACCGGGTCCTGTTTA 58.870 50.000 6.32 0.00 0.00 2.01
2076 3820 0.476771 ATGTCAACCGGGTCCTGTTT 59.523 50.000 6.32 0.00 0.00 2.83
2077 3821 0.036306 GATGTCAACCGGGTCCTGTT 59.964 55.000 6.32 0.00 0.00 3.16
2078 3822 1.677552 GATGTCAACCGGGTCCTGT 59.322 57.895 6.32 0.00 0.00 4.00
2079 3823 1.078426 GGATGTCAACCGGGTCCTG 60.078 63.158 6.32 0.00 0.00 3.86
2080 3824 2.298661 GGGATGTCAACCGGGTCCT 61.299 63.158 6.32 0.00 0.00 3.85
2081 3825 0.979187 TAGGGATGTCAACCGGGTCC 60.979 60.000 6.32 0.00 0.00 4.46
2082 3826 0.906775 TTAGGGATGTCAACCGGGTC 59.093 55.000 6.32 0.00 0.00 4.46
2083 3827 0.616891 GTTAGGGATGTCAACCGGGT 59.383 55.000 6.32 0.00 0.00 5.28
2084 3828 0.909623 AGTTAGGGATGTCAACCGGG 59.090 55.000 6.32 0.00 0.00 5.73
2085 3829 1.553248 TCAGTTAGGGATGTCAACCGG 59.447 52.381 0.00 0.00 0.00 5.28
2086 3830 2.618053 GTCAGTTAGGGATGTCAACCG 58.382 52.381 0.00 0.00 0.00 4.44
2087 3831 2.618053 CGTCAGTTAGGGATGTCAACC 58.382 52.381 0.00 0.00 0.00 3.77
2088 3832 2.000447 GCGTCAGTTAGGGATGTCAAC 59.000 52.381 0.00 0.00 0.00 3.18
2089 3833 1.899814 AGCGTCAGTTAGGGATGTCAA 59.100 47.619 0.00 0.00 0.00 3.18
2090 3834 1.476891 GAGCGTCAGTTAGGGATGTCA 59.523 52.381 0.00 0.00 0.00 3.58
2091 3835 1.476891 TGAGCGTCAGTTAGGGATGTC 59.523 52.381 0.00 0.00 0.00 3.06
2092 3836 1.557099 TGAGCGTCAGTTAGGGATGT 58.443 50.000 0.00 0.00 0.00 3.06
2093 3837 2.672961 TTGAGCGTCAGTTAGGGATG 57.327 50.000 0.00 0.00 0.00 3.51
2094 3838 2.766263 TGATTGAGCGTCAGTTAGGGAT 59.234 45.455 0.00 0.00 0.00 3.85
2095 3839 2.166459 CTGATTGAGCGTCAGTTAGGGA 59.834 50.000 0.00 0.00 38.58 4.20
2096 3840 2.544685 CTGATTGAGCGTCAGTTAGGG 58.455 52.381 0.00 0.00 38.58 3.53
2195 3939 1.341679 TGTCTATGGCCTGTACCTCGT 60.342 52.381 3.32 0.00 0.00 4.18
2196 3940 1.067212 GTGTCTATGGCCTGTACCTCG 59.933 57.143 3.32 0.00 0.00 4.63
2230 3976 3.369385 GACTCTTCGTCGAACACTGAAA 58.631 45.455 2.90 0.00 32.04 2.69
2231 3977 2.287427 GGACTCTTCGTCGAACACTGAA 60.287 50.000 2.90 0.00 43.79 3.02
2249 4008 1.569479 GAGGTGCACTTCGCTTGGAC 61.569 60.000 17.98 0.00 43.06 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.