Multiple sequence alignment - TraesCS4B01G243300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G243300 chr4B 100.000 4964 0 0 1 4964 504185006 504180043 0.000000e+00 9167.0
1 TraesCS4B01G243300 chr4D 89.546 2315 109 61 2050 4316 405463735 405461506 0.000000e+00 2811.0
2 TraesCS4B01G243300 chr4D 93.478 1610 58 24 379 1960 405465324 405463734 0.000000e+00 2348.0
3 TraesCS4B01G243300 chr4D 94.382 623 14 7 4346 4964 405461507 405460902 0.000000e+00 937.0
4 TraesCS4B01G243300 chr4D 93.510 339 20 2 11 347 405465657 405465319 2.060000e-138 503.0
5 TraesCS4B01G243300 chr4D 82.192 511 70 17 9 514 405466451 405465957 2.140000e-113 420.0
6 TraesCS4B01G243300 chr4A 89.975 1626 78 45 379 1960 63101480 63099896 0.000000e+00 2021.0
7 TraesCS4B01G243300 chr4A 89.324 1227 56 29 2620 3829 63099342 63098174 0.000000e+00 1471.0
8 TraesCS4B01G243300 chr4A 85.560 554 27 23 4186 4726 63097903 63097390 9.460000e-147 531.0
9 TraesCS4B01G243300 chr4A 83.559 590 24 25 2050 2593 63099897 63099335 7.470000e-133 484.0
10 TraesCS4B01G243300 chr4A 91.150 339 28 2 11 347 63101813 63101475 4.530000e-125 459.0
11 TraesCS4B01G243300 chr4A 92.045 264 7 8 3882 4131 63098165 63097902 4.720000e-95 359.0
12 TraesCS4B01G243300 chr4A 88.333 180 3 7 4793 4954 63097371 63097192 3.030000e-47 200.0
13 TraesCS4B01G243300 chr5D 96.825 63 1 1 4129 4190 298759812 298759750 2.440000e-18 104.0
14 TraesCS4B01G243300 chr1B 90.278 72 3 3 4130 4197 59028742 59028671 1.900000e-14 91.6
15 TraesCS4B01G243300 chr1B 88.889 72 3 1 4122 4188 611319584 611319655 3.180000e-12 84.2
16 TraesCS4B01G243300 chr6B 92.188 64 3 2 4129 4191 156736332 156736394 6.840000e-14 89.8
17 TraesCS4B01G243300 chr3A 94.828 58 1 1 4130 4187 32635229 32635284 6.840000e-14 89.8
18 TraesCS4B01G243300 chr7D 92.188 64 1 1 4129 4188 520411701 520411638 2.460000e-13 87.9
19 TraesCS4B01G243300 chr6A 90.909 66 2 1 4127 4188 73455667 73455602 8.850000e-13 86.1
20 TraesCS4B01G243300 chr5B 94.643 56 2 1 4132 4187 658739020 658738966 8.850000e-13 86.1
21 TraesCS4B01G243300 chr7A 90.476 63 5 1 4108 4170 274661123 274661062 1.150000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G243300 chr4B 504180043 504185006 4963 True 9167.000000 9167 100.000000 1 4964 1 chr4B.!!$R1 4963
1 TraesCS4B01G243300 chr4D 405460902 405466451 5549 True 1403.800000 2811 90.621600 9 4964 5 chr4D.!!$R1 4955
2 TraesCS4B01G243300 chr4A 63097192 63101813 4621 True 789.285714 2021 88.563714 11 4954 7 chr4A.!!$R1 4943

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
368 1153 0.107993 CTCAGAGGCGCAATGAAGGA 60.108 55.0 10.83 0.0 0.00 3.36 F
974 1779 0.251386 TCGTTCTCAGCCTCTCAGGT 60.251 55.0 0.00 0.0 37.80 4.00 F
2245 3111 0.378257 GCATCGCATCCGTTTGACAT 59.622 50.0 0.00 0.0 35.54 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2041 2889 0.038526 AACCGCACGAACCTGTAGAG 60.039 55.0 0.0 0.0 0.00 2.43 R
2848 3763 0.035152 ATCTTGAGCGTGCCCATCAA 60.035 50.0 0.0 0.0 0.00 2.57 R
4238 5239 0.171007 CGCCCCGAACGTAAGAGTAA 59.829 55.0 0.0 0.0 43.62 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 807 3.784994 CAGAGCGTCTAGTTAAAGCGTAC 59.215 47.826 0.00 0.00 0.00 3.67
37 822 0.730155 CGTACACGCAACGGCTAGAA 60.730 55.000 0.00 0.00 36.71 2.10
100 885 7.892731 CGGCTACAATTTTCGATTTCAAAAATC 59.107 33.333 2.93 2.93 34.78 2.17
182 967 4.651008 GGCGTCACCGACCGTCAA 62.651 66.667 0.00 0.00 35.50 3.18
183 968 2.431942 GCGTCACCGACCGTCAAT 60.432 61.111 0.00 0.00 35.63 2.57
189 974 2.794910 GTCACCGACCGTCAATATCATG 59.205 50.000 0.00 0.00 0.00 3.07
193 978 2.539688 CCGACCGTCAATATCATGTGTG 59.460 50.000 0.00 0.00 0.00 3.82
199 984 4.379290 CCGTCAATATCATGTGTGCACAAA 60.379 41.667 23.59 18.43 45.41 2.83
212 997 1.243902 GCACAAATTTCGGTCCCTCA 58.756 50.000 0.00 0.00 0.00 3.86
217 1002 1.534729 AATTTCGGTCCCTCACAAGC 58.465 50.000 0.00 0.00 0.00 4.01
220 1005 2.046892 CGGTCCCTCACAAGCCAG 60.047 66.667 0.00 0.00 0.00 4.85
341 1126 7.694388 CAATGGTTGCTCATATTTTCTCATG 57.306 36.000 0.00 0.00 0.00 3.07
343 1128 5.263599 TGGTTGCTCATATTTTCTCATGGT 58.736 37.500 0.00 0.00 0.00 3.55
344 1129 5.716228 TGGTTGCTCATATTTTCTCATGGTT 59.284 36.000 0.00 0.00 0.00 3.67
345 1130 6.889177 TGGTTGCTCATATTTTCTCATGGTTA 59.111 34.615 0.00 0.00 0.00 2.85
346 1131 7.395772 TGGTTGCTCATATTTTCTCATGGTTAA 59.604 33.333 0.00 0.00 0.00 2.01
347 1132 8.250332 GGTTGCTCATATTTTCTCATGGTTAAA 58.750 33.333 0.00 0.00 0.00 1.52
348 1133 9.638239 GTTGCTCATATTTTCTCATGGTTAAAA 57.362 29.630 0.00 0.00 0.00 1.52
349 1134 9.638239 TTGCTCATATTTTCTCATGGTTAAAAC 57.362 29.630 0.00 0.00 0.00 2.43
350 1135 9.023962 TGCTCATATTTTCTCATGGTTAAAACT 57.976 29.630 0.00 0.00 0.00 2.66
351 1136 9.508567 GCTCATATTTTCTCATGGTTAAAACTC 57.491 33.333 0.00 0.00 0.00 3.01
356 1141 7.510549 TTTTCTCATGGTTAAAACTCAGAGG 57.489 36.000 1.53 0.00 0.00 3.69
357 1142 4.579869 TCTCATGGTTAAAACTCAGAGGC 58.420 43.478 1.53 0.00 0.00 4.70
358 1143 3.334691 TCATGGTTAAAACTCAGAGGCG 58.665 45.455 1.53 0.00 0.00 5.52
359 1144 1.519408 TGGTTAAAACTCAGAGGCGC 58.481 50.000 0.00 0.00 0.00 6.53
360 1145 1.202710 TGGTTAAAACTCAGAGGCGCA 60.203 47.619 10.83 0.00 0.00 6.09
361 1146 1.877443 GGTTAAAACTCAGAGGCGCAA 59.123 47.619 10.83 0.00 0.00 4.85
362 1147 2.488153 GGTTAAAACTCAGAGGCGCAAT 59.512 45.455 10.83 0.00 0.00 3.56
363 1148 3.492313 GTTAAAACTCAGAGGCGCAATG 58.508 45.455 10.83 4.33 0.00 2.82
364 1149 1.896220 AAAACTCAGAGGCGCAATGA 58.104 45.000 10.83 9.06 0.00 2.57
365 1150 1.896220 AAACTCAGAGGCGCAATGAA 58.104 45.000 10.83 0.00 0.00 2.57
366 1151 1.446907 AACTCAGAGGCGCAATGAAG 58.553 50.000 10.83 3.00 0.00 3.02
367 1152 0.392193 ACTCAGAGGCGCAATGAAGG 60.392 55.000 10.83 1.75 0.00 3.46
368 1153 0.107993 CTCAGAGGCGCAATGAAGGA 60.108 55.000 10.83 0.00 0.00 3.36
369 1154 0.107993 TCAGAGGCGCAATGAAGGAG 60.108 55.000 10.83 0.00 0.00 3.69
370 1155 0.107993 CAGAGGCGCAATGAAGGAGA 60.108 55.000 10.83 0.00 0.00 3.71
371 1156 0.615331 AGAGGCGCAATGAAGGAGAA 59.385 50.000 10.83 0.00 0.00 2.87
372 1157 1.003580 AGAGGCGCAATGAAGGAGAAA 59.996 47.619 10.83 0.00 0.00 2.52
373 1158 1.812571 GAGGCGCAATGAAGGAGAAAA 59.187 47.619 10.83 0.00 0.00 2.29
374 1159 1.541588 AGGCGCAATGAAGGAGAAAAC 59.458 47.619 10.83 0.00 0.00 2.43
375 1160 1.606606 GCGCAATGAAGGAGAAAACG 58.393 50.000 0.30 0.00 0.00 3.60
376 1161 1.729149 GCGCAATGAAGGAGAAAACGG 60.729 52.381 0.30 0.00 0.00 4.44
377 1162 1.804151 CGCAATGAAGGAGAAAACGGA 59.196 47.619 0.00 0.00 0.00 4.69
421 1206 3.799366 TGTACCCATAAGCCATAACACG 58.201 45.455 0.00 0.00 0.00 4.49
429 1215 5.971202 CCATAAGCCATAACACGAAAATGAC 59.029 40.000 0.00 0.00 0.00 3.06
450 1236 5.129815 TGACGAGGTAATTTAGGCACCTATT 59.870 40.000 0.00 0.00 42.78 1.73
456 1246 9.167311 GAGGTAATTTAGGCACCTATTATCATG 57.833 37.037 0.00 0.00 42.78 3.07
465 1255 4.505566 GCACCTATTATCATGAAGGGAGCA 60.506 45.833 18.48 0.00 35.55 4.26
469 1259 7.068593 CACCTATTATCATGAAGGGAGCAAAAA 59.931 37.037 14.33 0.00 33.16 1.94
519 1313 0.611062 AACCCAGAGATCGACACGGA 60.611 55.000 0.00 0.00 0.00 4.69
582 1376 6.914654 AGTAGTGCTCATCATGACATAGAT 57.085 37.500 0.00 0.00 0.00 1.98
822 1623 3.862402 CCGTCTCCGTCTCCGTCG 61.862 72.222 0.00 0.00 0.00 5.12
830 1631 2.049802 GTCTCCGTCGCCGTTTCA 60.050 61.111 0.00 0.00 0.00 2.69
919 1724 4.399934 CGGCTTATAATACTCTCCTCCTCC 59.600 50.000 0.00 0.00 0.00 4.30
921 1726 6.020389 GGCTTATAATACTCTCCTCCTCCTT 58.980 44.000 0.00 0.00 0.00 3.36
928 1733 1.287739 CTCTCCTCCTCCTTGTCTCCT 59.712 57.143 0.00 0.00 0.00 3.69
929 1734 1.286553 TCTCCTCCTCCTTGTCTCCTC 59.713 57.143 0.00 0.00 0.00 3.71
930 1735 0.336737 TCCTCCTCCTTGTCTCCTCC 59.663 60.000 0.00 0.00 0.00 4.30
974 1779 0.251386 TCGTTCTCAGCCTCTCAGGT 60.251 55.000 0.00 0.00 37.80 4.00
1028 1837 4.657824 CGTTCACACTCGCCCCGT 62.658 66.667 0.00 0.00 0.00 5.28
1055 1864 1.063266 GTGTCCATCTCCTCCCTCTCT 60.063 57.143 0.00 0.00 0.00 3.10
1056 1865 1.216678 TGTCCATCTCCTCCCTCTCTC 59.783 57.143 0.00 0.00 0.00 3.20
1057 1866 1.499007 GTCCATCTCCTCCCTCTCTCT 59.501 57.143 0.00 0.00 0.00 3.10
1058 1867 1.780309 TCCATCTCCTCCCTCTCTCTC 59.220 57.143 0.00 0.00 0.00 3.20
1234 2047 2.636830 CATGCCTTCTTCTTGGATCGT 58.363 47.619 0.00 0.00 0.00 3.73
1488 2303 4.552365 ATCCGCGGGACATGCAGG 62.552 66.667 27.83 0.00 32.98 4.85
1499 2314 2.363406 ATGCAGGAAAGGGGCAGC 60.363 61.111 0.00 0.00 41.40 5.25
1511 2326 4.526438 AAGGGGCAGCTCATTAATACTT 57.474 40.909 0.00 0.00 0.00 2.24
1530 2345 1.957668 TCTACTACATACGGCGCTCA 58.042 50.000 6.90 0.00 0.00 4.26
1674 2496 0.676466 TATGTGCAGGCAAAGGACGG 60.676 55.000 0.00 0.00 0.00 4.79
1723 2553 7.651304 TGTTGCTATTATGTTTTGACTGTTTGG 59.349 33.333 0.00 0.00 0.00 3.28
1725 2555 5.576774 GCTATTATGTTTTGACTGTTTGGGC 59.423 40.000 0.00 0.00 0.00 5.36
1937 2785 0.824109 TCAAGCAGGATGACTACCCG 59.176 55.000 0.00 0.00 39.69 5.28
1958 2806 2.969628 AGTACCAGCCTCAGAAATCG 57.030 50.000 0.00 0.00 0.00 3.34
1959 2807 2.180276 AGTACCAGCCTCAGAAATCGT 58.820 47.619 0.00 0.00 0.00 3.73
1960 2808 3.362706 AGTACCAGCCTCAGAAATCGTA 58.637 45.455 0.00 0.00 0.00 3.43
1961 2809 3.767673 AGTACCAGCCTCAGAAATCGTAA 59.232 43.478 0.00 0.00 0.00 3.18
1962 2810 3.252974 ACCAGCCTCAGAAATCGTAAG 57.747 47.619 0.00 0.00 0.00 2.34
1963 2811 1.936547 CCAGCCTCAGAAATCGTAAGC 59.063 52.381 0.00 0.00 37.18 3.09
1964 2812 2.621338 CAGCCTCAGAAATCGTAAGCA 58.379 47.619 0.00 0.00 37.18 3.91
1965 2813 2.349886 CAGCCTCAGAAATCGTAAGCAC 59.650 50.000 0.00 0.00 37.18 4.40
1966 2814 2.028112 AGCCTCAGAAATCGTAAGCACA 60.028 45.455 0.00 0.00 37.18 4.57
1967 2815 2.939103 GCCTCAGAAATCGTAAGCACAT 59.061 45.455 0.00 0.00 37.18 3.21
1968 2816 4.119862 GCCTCAGAAATCGTAAGCACATA 58.880 43.478 0.00 0.00 37.18 2.29
1969 2817 4.025647 GCCTCAGAAATCGTAAGCACATAC 60.026 45.833 0.00 0.00 37.18 2.39
1970 2818 5.352284 CCTCAGAAATCGTAAGCACATACT 58.648 41.667 0.00 0.00 37.18 2.12
1971 2819 6.504398 CCTCAGAAATCGTAAGCACATACTA 58.496 40.000 0.00 0.00 37.18 1.82
1972 2820 6.418226 CCTCAGAAATCGTAAGCACATACTAC 59.582 42.308 0.00 0.00 37.18 2.73
1973 2821 7.096884 TCAGAAATCGTAAGCACATACTACT 57.903 36.000 0.00 0.00 37.18 2.57
1974 2822 7.194278 TCAGAAATCGTAAGCACATACTACTC 58.806 38.462 0.00 0.00 37.18 2.59
1975 2823 6.418226 CAGAAATCGTAAGCACATACTACTCC 59.582 42.308 0.00 0.00 37.18 3.85
1976 2824 6.321690 AGAAATCGTAAGCACATACTACTCCT 59.678 38.462 0.00 0.00 37.18 3.69
1977 2825 7.501559 AGAAATCGTAAGCACATACTACTCCTA 59.498 37.037 0.00 0.00 37.18 2.94
1978 2826 5.998454 TCGTAAGCACATACTACTCCTAC 57.002 43.478 0.00 0.00 37.18 3.18
1979 2827 5.430886 TCGTAAGCACATACTACTCCTACA 58.569 41.667 0.00 0.00 37.18 2.74
1980 2828 5.882000 TCGTAAGCACATACTACTCCTACAA 59.118 40.000 0.00 0.00 37.18 2.41
1981 2829 6.037940 TCGTAAGCACATACTACTCCTACAAG 59.962 42.308 0.00 0.00 37.18 3.16
1982 2830 6.183360 CGTAAGCACATACTACTCCTACAAGT 60.183 42.308 0.00 0.00 0.00 3.16
1983 2831 5.584253 AGCACATACTACTCCTACAAGTG 57.416 43.478 0.00 0.00 0.00 3.16
1984 2832 5.017490 AGCACATACTACTCCTACAAGTGT 58.983 41.667 0.00 0.00 0.00 3.55
1985 2833 5.480772 AGCACATACTACTCCTACAAGTGTT 59.519 40.000 0.00 0.00 0.00 3.32
1986 2834 6.014499 AGCACATACTACTCCTACAAGTGTTT 60.014 38.462 0.00 0.00 0.00 2.83
1987 2835 6.310711 GCACATACTACTCCTACAAGTGTTTC 59.689 42.308 0.00 0.00 0.00 2.78
1988 2836 7.375834 CACATACTACTCCTACAAGTGTTTCA 58.624 38.462 0.00 0.00 0.00 2.69
1989 2837 7.328737 CACATACTACTCCTACAAGTGTTTCAC 59.671 40.741 0.00 0.00 34.10 3.18
1991 2839 8.737175 CATACTACTCCTACAAGTGTTTCACTA 58.263 37.037 2.80 0.00 44.62 2.74
1992 2840 6.979465 ACTACTCCTACAAGTGTTTCACTAC 58.021 40.000 2.80 0.00 44.62 2.73
1993 2841 6.776603 ACTACTCCTACAAGTGTTTCACTACT 59.223 38.462 2.80 0.00 44.62 2.57
1994 2842 6.481434 ACTCCTACAAGTGTTTCACTACTT 57.519 37.500 2.80 0.00 44.62 2.24
2000 2848 5.811399 CAAGTGTTTCACTACTTGTTGGA 57.189 39.130 8.52 0.00 44.62 3.53
2001 2849 6.377327 CAAGTGTTTCACTACTTGTTGGAT 57.623 37.500 8.52 0.00 44.62 3.41
2002 2850 6.795399 CAAGTGTTTCACTACTTGTTGGATT 58.205 36.000 8.52 0.00 44.62 3.01
2003 2851 7.257722 CAAGTGTTTCACTACTTGTTGGATTT 58.742 34.615 8.52 0.00 44.62 2.17
2004 2852 7.404671 AGTGTTTCACTACTTGTTGGATTTT 57.595 32.000 0.27 0.00 43.46 1.82
2005 2853 8.514330 AGTGTTTCACTACTTGTTGGATTTTA 57.486 30.769 0.27 0.00 43.46 1.52
2006 2854 8.962679 AGTGTTTCACTACTTGTTGGATTTTAA 58.037 29.630 0.27 0.00 43.46 1.52
2007 2855 9.016623 GTGTTTCACTACTTGTTGGATTTTAAC 57.983 33.333 0.00 0.00 0.00 2.01
2008 2856 8.962679 TGTTTCACTACTTGTTGGATTTTAACT 58.037 29.630 0.00 0.00 0.00 2.24
2012 2860 9.616156 TCACTACTTGTTGGATTTTAACTAACA 57.384 29.630 0.00 0.00 37.06 2.41
2013 2861 9.878599 CACTACTTGTTGGATTTTAACTAACAG 57.121 33.333 0.00 0.00 39.18 3.16
2014 2862 9.623000 ACTACTTGTTGGATTTTAACTAACAGT 57.377 29.630 0.00 0.00 39.18 3.55
2015 2863 9.878599 CTACTTGTTGGATTTTAACTAACAGTG 57.121 33.333 0.00 0.00 39.18 3.66
2016 2864 7.200455 ACTTGTTGGATTTTAACTAACAGTGC 58.800 34.615 0.00 0.00 39.18 4.40
2017 2865 6.701145 TGTTGGATTTTAACTAACAGTGCA 57.299 33.333 0.00 0.00 34.75 4.57
2018 2866 6.734137 TGTTGGATTTTAACTAACAGTGCAG 58.266 36.000 0.00 0.00 34.75 4.41
2019 2867 6.544197 TGTTGGATTTTAACTAACAGTGCAGA 59.456 34.615 0.00 0.00 34.75 4.26
2020 2868 6.801539 TGGATTTTAACTAACAGTGCAGAG 57.198 37.500 0.00 0.00 0.00 3.35
2021 2869 5.181245 TGGATTTTAACTAACAGTGCAGAGC 59.819 40.000 0.00 0.00 0.00 4.09
2022 2870 5.181245 GGATTTTAACTAACAGTGCAGAGCA 59.819 40.000 0.00 0.00 35.60 4.26
2023 2871 6.127897 GGATTTTAACTAACAGTGCAGAGCAT 60.128 38.462 0.00 0.00 41.91 3.79
2024 2872 6.633500 TTTTAACTAACAGTGCAGAGCATT 57.367 33.333 0.00 0.00 41.91 3.56
2033 2881 3.826637 GCAGAGCATTGCATTGGTT 57.173 47.368 13.92 3.00 43.53 3.67
2034 2882 1.636988 GCAGAGCATTGCATTGGTTC 58.363 50.000 13.92 8.02 43.53 3.62
2035 2883 1.203994 GCAGAGCATTGCATTGGTTCT 59.796 47.619 13.92 9.83 43.53 3.01
2036 2884 2.353406 GCAGAGCATTGCATTGGTTCTT 60.353 45.455 13.92 2.11 43.53 2.52
2037 2885 3.508762 CAGAGCATTGCATTGGTTCTTC 58.491 45.455 13.92 2.57 0.00 2.87
2038 2886 3.192844 CAGAGCATTGCATTGGTTCTTCT 59.807 43.478 13.92 4.67 0.00 2.85
2039 2887 3.192844 AGAGCATTGCATTGGTTCTTCTG 59.807 43.478 13.92 0.00 0.00 3.02
2040 2888 2.232941 AGCATTGCATTGGTTCTTCTGG 59.767 45.455 11.91 0.00 0.00 3.86
2041 2889 2.613691 CATTGCATTGGTTCTTCTGGC 58.386 47.619 0.47 0.00 0.00 4.85
2042 2890 1.999648 TTGCATTGGTTCTTCTGGCT 58.000 45.000 0.00 0.00 0.00 4.75
2043 2891 1.538047 TGCATTGGTTCTTCTGGCTC 58.462 50.000 0.00 0.00 0.00 4.70
2044 2892 1.074405 TGCATTGGTTCTTCTGGCTCT 59.926 47.619 0.00 0.00 0.00 4.09
2045 2893 2.305635 TGCATTGGTTCTTCTGGCTCTA 59.694 45.455 0.00 0.00 0.00 2.43
2046 2894 2.680339 GCATTGGTTCTTCTGGCTCTAC 59.320 50.000 0.00 0.00 0.00 2.59
2047 2895 3.869912 GCATTGGTTCTTCTGGCTCTACA 60.870 47.826 0.00 0.00 0.00 2.74
2048 2896 3.685139 TTGGTTCTTCTGGCTCTACAG 57.315 47.619 0.00 0.00 39.84 2.74
2153 3001 3.575965 CGCAAGTAAGCAATCCCTTTT 57.424 42.857 0.00 0.00 0.00 2.27
2160 3008 2.222227 AGCAATCCCTTTTCACTCCC 57.778 50.000 0.00 0.00 0.00 4.30
2164 3012 2.310052 CAATCCCTTTTCACTCCCCTCT 59.690 50.000 0.00 0.00 0.00 3.69
2165 3013 3.508952 ATCCCTTTTCACTCCCCTCTA 57.491 47.619 0.00 0.00 0.00 2.43
2166 3014 2.547990 TCCCTTTTCACTCCCCTCTAC 58.452 52.381 0.00 0.00 0.00 2.59
2167 3015 1.560146 CCCTTTTCACTCCCCTCTACC 59.440 57.143 0.00 0.00 0.00 3.18
2175 3023 2.043652 CCCCTCTACCCCGTTCGA 60.044 66.667 0.00 0.00 0.00 3.71
2245 3111 0.378257 GCATCGCATCCGTTTGACAT 59.622 50.000 0.00 0.00 35.54 3.06
2335 3206 2.092914 TCATCAGTACGCTCTGAGAGGA 60.093 50.000 12.01 0.00 45.70 3.71
2393 3267 2.360225 TCATGGACGGACGGACGA 60.360 61.111 8.01 0.00 37.61 4.20
2395 3269 1.141019 CATGGACGGACGGACGAAT 59.859 57.895 8.01 0.00 37.61 3.34
2484 3378 0.531090 TCACCCGTTTGTCTTCCGTG 60.531 55.000 0.00 0.00 0.00 4.94
2530 3436 3.319198 GTCCCCGGGCTTGACTCA 61.319 66.667 17.73 0.00 0.00 3.41
2544 3459 1.610038 TGACTCAGTTCGCTTTACCGA 59.390 47.619 0.00 0.00 35.09 4.69
2585 3500 2.451132 CACAGTTATCGCTACAGTCCG 58.549 52.381 0.00 0.00 0.00 4.79
2586 3501 1.404391 ACAGTTATCGCTACAGTCCGG 59.596 52.381 0.00 0.00 0.00 5.14
2588 3503 0.596859 GTTATCGCTACAGTCCGGCC 60.597 60.000 0.00 0.00 0.00 6.13
2589 3504 1.741327 TTATCGCTACAGTCCGGCCC 61.741 60.000 0.00 0.00 0.00 5.80
2609 3524 4.174305 CCCGAGCTGTTTGGGTTT 57.826 55.556 8.61 0.00 44.70 3.27
2610 3525 1.659794 CCCGAGCTGTTTGGGTTTG 59.340 57.895 8.61 0.00 44.70 2.93
2611 3526 1.007387 CCGAGCTGTTTGGGTTTGC 60.007 57.895 0.00 0.00 0.00 3.68
2612 3527 1.370414 CGAGCTGTTTGGGTTTGCG 60.370 57.895 0.00 0.00 0.00 4.85
2613 3528 1.661509 GAGCTGTTTGGGTTTGCGC 60.662 57.895 0.00 0.00 0.00 6.09
2614 3529 2.105930 GCTGTTTGGGTTTGCGCA 59.894 55.556 5.66 5.66 35.68 6.09
2615 3530 1.950630 GCTGTTTGGGTTTGCGCAG 60.951 57.895 11.31 0.00 38.79 5.18
2616 3531 1.300080 CTGTTTGGGTTTGCGCAGG 60.300 57.895 11.31 0.00 38.79 4.85
2617 3532 2.028925 GTTTGGGTTTGCGCAGGG 59.971 61.111 11.31 0.00 38.79 4.45
2618 3533 2.443016 TTTGGGTTTGCGCAGGGT 60.443 55.556 11.31 0.00 38.79 4.34
2657 3572 1.582610 GCGGTTTGAATCCTGGCGAA 61.583 55.000 0.00 0.00 0.00 4.70
2672 3587 1.469079 GGCGAAAATGATTGGGTTCCG 60.469 52.381 0.00 0.00 0.00 4.30
2676 3591 1.923356 AAATGATTGGGTTCCGCACT 58.077 45.000 0.00 0.00 0.00 4.40
2743 3658 3.574396 TCTGCAGCAAAGTAGACTACTGT 59.426 43.478 15.88 7.75 39.39 3.55
2744 3659 3.653344 TGCAGCAAAGTAGACTACTGTG 58.347 45.455 23.52 23.52 45.01 3.66
2745 3660 3.069586 TGCAGCAAAGTAGACTACTGTGT 59.930 43.478 26.62 14.95 44.24 3.72
2746 3661 3.675698 GCAGCAAAGTAGACTACTGTGTC 59.324 47.826 26.62 20.22 44.24 3.67
2848 3763 0.321996 GTCGGCTTTCCTCAACCTCT 59.678 55.000 0.00 0.00 0.00 3.69
2962 3877 6.116711 TGTGGAAGGTAATAACTAACTGCA 57.883 37.500 0.00 0.00 0.00 4.41
2968 3883 9.338622 GGAAGGTAATAACTAACTGCATTACAT 57.661 33.333 5.28 0.00 36.17 2.29
2993 3908 3.075432 TCCCTCATGATCATGGCATCATT 59.925 43.478 30.54 0.00 40.86 2.57
2996 3911 5.067805 CCCTCATGATCATGGCATCATTATG 59.932 44.000 30.54 9.41 40.86 1.90
3016 3931 2.299867 TGCAGCATGTACTCTCTTGTGA 59.700 45.455 0.00 0.00 39.31 3.58
3053 3975 5.097529 TCATGTACGTATGAAAGAACCGTC 58.902 41.667 0.00 0.00 34.32 4.79
3056 3978 4.919168 TGTACGTATGAAAGAACCGTCTTG 59.081 41.667 0.00 0.00 43.59 3.02
3059 3981 3.985279 CGTATGAAAGAACCGTCTTGTGA 59.015 43.478 0.00 0.00 43.59 3.58
3064 3986 3.626028 AAGAACCGTCTTGTGATTTGC 57.374 42.857 0.00 0.00 42.73 3.68
3065 3987 2.571212 AGAACCGTCTTGTGATTTGCA 58.429 42.857 0.00 0.00 0.00 4.08
3078 4000 2.146073 ATTTGCAACAGGGAGTGCGC 62.146 55.000 0.00 0.00 0.00 6.09
3405 4333 2.435059 GCGCGCTCCTTCTCCTTT 60.435 61.111 26.67 0.00 0.00 3.11
3516 4447 0.968393 GAGGACAGAAGACGCCCTCT 60.968 60.000 0.00 0.00 40.07 3.69
3877 4823 3.505680 CGGATTGAAGATTGAACAACCCA 59.494 43.478 0.00 0.00 28.49 4.51
4006 4964 6.525578 TTTACTCCTACCGCCTATGATATG 57.474 41.667 0.00 0.00 0.00 1.78
4110 5068 2.925724 TGTTTGTTCCTCCGTGTGATT 58.074 42.857 0.00 0.00 0.00 2.57
4135 5135 9.998106 TTTGATAGATTGCTAGTAAATACTCCC 57.002 33.333 0.00 0.00 37.73 4.30
4136 5136 8.958060 TGATAGATTGCTAGTAAATACTCCCT 57.042 34.615 0.00 0.00 37.73 4.20
4137 5137 9.026121 TGATAGATTGCTAGTAAATACTCCCTC 57.974 37.037 0.00 0.00 37.73 4.30
4138 5138 6.673839 AGATTGCTAGTAAATACTCCCTCC 57.326 41.667 0.00 0.00 37.73 4.30
4139 5139 4.931661 TTGCTAGTAAATACTCCCTCCG 57.068 45.455 0.00 0.00 37.73 4.63
4140 5140 3.907221 TGCTAGTAAATACTCCCTCCGT 58.093 45.455 0.00 0.00 37.73 4.69
4141 5141 5.052693 TGCTAGTAAATACTCCCTCCGTA 57.947 43.478 0.00 0.00 37.73 4.02
4142 5142 5.448654 TGCTAGTAAATACTCCCTCCGTAA 58.551 41.667 0.00 0.00 37.73 3.18
4143 5143 5.893255 TGCTAGTAAATACTCCCTCCGTAAA 59.107 40.000 0.00 0.00 37.73 2.01
4144 5144 6.183360 TGCTAGTAAATACTCCCTCCGTAAAC 60.183 42.308 0.00 0.00 37.73 2.01
4145 5145 6.040278 GCTAGTAAATACTCCCTCCGTAAACT 59.960 42.308 0.00 0.00 37.73 2.66
4146 5146 7.229506 GCTAGTAAATACTCCCTCCGTAAACTA 59.770 40.741 0.00 0.00 37.73 2.24
4147 5147 7.961326 AGTAAATACTCCCTCCGTAAACTAA 57.039 36.000 0.00 0.00 0.00 2.24
4148 5148 8.544687 AGTAAATACTCCCTCCGTAAACTAAT 57.455 34.615 0.00 0.00 0.00 1.73
4149 5149 9.646522 AGTAAATACTCCCTCCGTAAACTAATA 57.353 33.333 0.00 0.00 0.00 0.98
4155 5155 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4156 5156 8.003629 ACTCCCTCCGTAAACTAATATAAGAGT 58.996 37.037 0.00 0.00 0.00 3.24
4157 5157 8.174733 TCCCTCCGTAAACTAATATAAGAGTG 57.825 38.462 0.00 0.00 0.00 3.51
4158 5158 7.781693 TCCCTCCGTAAACTAATATAAGAGTGT 59.218 37.037 0.00 0.00 0.00 3.55
4159 5159 8.419442 CCCTCCGTAAACTAATATAAGAGTGTT 58.581 37.037 0.00 0.00 0.00 3.32
4160 5160 9.813446 CCTCCGTAAACTAATATAAGAGTGTTT 57.187 33.333 0.00 0.00 0.00 2.83
4178 5178 9.915629 AGAGTGTTTAGATCACTAAGTTTACAG 57.084 33.333 0.00 0.00 44.68 2.74
4179 5179 9.909644 GAGTGTTTAGATCACTAAGTTTACAGA 57.090 33.333 0.00 0.00 44.68 3.41
4180 5180 9.915629 AGTGTTTAGATCACTAAGTTTACAGAG 57.084 33.333 0.00 0.00 43.17 3.35
4181 5181 9.141400 GTGTTTAGATCACTAAGTTTACAGAGG 57.859 37.037 0.00 0.00 39.36 3.69
4182 5182 8.311836 TGTTTAGATCACTAAGTTTACAGAGGG 58.688 37.037 0.00 0.00 39.36 4.30
4183 5183 8.529476 GTTTAGATCACTAAGTTTACAGAGGGA 58.471 37.037 0.00 0.00 39.36 4.20
4184 5184 6.783708 AGATCACTAAGTTTACAGAGGGAG 57.216 41.667 0.00 0.00 0.00 4.30
4238 5239 7.661127 GGTAACAAACTTTTCACCAACTTTT 57.339 32.000 0.00 0.00 0.00 2.27
4256 5257 2.368655 TTTACTCTTACGTTCGGGGC 57.631 50.000 0.00 0.00 0.00 5.80
4283 5284 0.753479 TGCATGGTTGGTCAAACGGT 60.753 50.000 0.00 0.00 39.91 4.83
4314 5315 4.620982 CCAACACATTTGGAGGAAGAAAC 58.379 43.478 0.00 0.00 42.06 2.78
4316 5317 5.284079 CAACACATTTGGAGGAAGAAACTG 58.716 41.667 0.00 0.00 0.00 3.16
4317 5318 4.792068 ACACATTTGGAGGAAGAAACTGA 58.208 39.130 0.00 0.00 0.00 3.41
4318 5319 5.388654 ACACATTTGGAGGAAGAAACTGAT 58.611 37.500 0.00 0.00 0.00 2.90
4319 5320 5.242393 ACACATTTGGAGGAAGAAACTGATG 59.758 40.000 0.00 0.00 0.00 3.07
4321 5322 6.016024 CACATTTGGAGGAAGAAACTGATGAA 60.016 38.462 0.00 0.00 0.00 2.57
4322 5323 6.015940 ACATTTGGAGGAAGAAACTGATGAAC 60.016 38.462 0.00 0.00 0.00 3.18
4323 5324 3.664107 TGGAGGAAGAAACTGATGAACG 58.336 45.455 0.00 0.00 0.00 3.95
4324 5325 3.003480 GGAGGAAGAAACTGATGAACGG 58.997 50.000 0.00 0.00 0.00 4.44
4325 5326 3.003480 GAGGAAGAAACTGATGAACGGG 58.997 50.000 0.00 0.00 0.00 5.28
4326 5327 2.372172 AGGAAGAAACTGATGAACGGGT 59.628 45.455 0.00 0.00 0.00 5.28
4327 5328 2.484264 GGAAGAAACTGATGAACGGGTG 59.516 50.000 0.00 0.00 0.00 4.61
4328 5329 1.523758 AGAAACTGATGAACGGGTGC 58.476 50.000 0.00 0.00 0.00 5.01
4329 5330 0.521735 GAAACTGATGAACGGGTGCC 59.478 55.000 0.00 0.00 0.00 5.01
4330 5331 0.179004 AAACTGATGAACGGGTGCCA 60.179 50.000 0.00 0.00 0.00 4.92
4331 5332 0.038166 AACTGATGAACGGGTGCCAT 59.962 50.000 0.00 0.00 0.00 4.40
4332 5333 0.677731 ACTGATGAACGGGTGCCATG 60.678 55.000 0.00 0.00 0.00 3.66
4333 5334 1.996786 CTGATGAACGGGTGCCATGC 61.997 60.000 0.00 0.00 0.00 4.06
4334 5335 2.035469 ATGAACGGGTGCCATGCA 59.965 55.556 0.00 0.00 35.60 3.96
4335 5336 1.380246 ATGAACGGGTGCCATGCAT 60.380 52.632 0.00 0.00 41.91 3.96
4336 5337 1.669049 ATGAACGGGTGCCATGCATG 61.669 55.000 20.19 20.19 41.91 4.06
4337 5338 2.035469 AACGGGTGCCATGCATGA 59.965 55.556 28.31 6.08 41.91 3.07
4338 5339 2.270297 GAACGGGTGCCATGCATGAC 62.270 60.000 28.31 17.77 41.91 3.06
4339 5340 2.438975 CGGGTGCCATGCATGACT 60.439 61.111 28.31 0.00 41.91 3.41
4340 5341 2.475466 CGGGTGCCATGCATGACTC 61.475 63.158 28.31 17.41 41.91 3.36
4341 5342 2.475466 GGGTGCCATGCATGACTCG 61.475 63.158 28.31 12.10 41.91 4.18
4342 5343 2.406401 GTGCCATGCATGACTCGC 59.594 61.111 28.31 21.42 41.91 5.03
4343 5344 2.110967 GTGCCATGCATGACTCGCT 61.111 57.895 28.31 0.00 41.91 4.93
4344 5345 2.110352 TGCCATGCATGACTCGCTG 61.110 57.895 28.31 10.23 31.71 5.18
4392 5393 1.527380 ACACCGTGGCCGTTGAAAT 60.527 52.632 3.03 0.00 30.20 2.17
4533 5538 0.921896 ATTACATGGAGCCTGCCTGT 59.078 50.000 0.00 0.00 0.00 4.00
4536 5541 1.451567 CATGGAGCCTGCCTGTCTG 60.452 63.158 0.00 0.00 0.00 3.51
4538 5543 3.715097 GGAGCCTGCCTGTCTGCT 61.715 66.667 0.00 0.00 36.62 4.24
4539 5544 2.350514 GAGCCTGCCTGTCTGCTT 59.649 61.111 0.00 0.00 33.41 3.91
4540 5545 1.599047 GAGCCTGCCTGTCTGCTTA 59.401 57.895 0.00 0.00 33.41 3.09
4541 5546 0.742635 GAGCCTGCCTGTCTGCTTAC 60.743 60.000 0.00 0.00 33.41 2.34
4542 5547 1.003355 GCCTGCCTGTCTGCTTACA 60.003 57.895 0.00 0.00 0.00 2.41
4544 5549 1.661341 CCTGCCTGTCTGCTTACATC 58.339 55.000 0.00 0.00 0.00 3.06
4545 5550 1.284657 CTGCCTGTCTGCTTACATCG 58.715 55.000 0.00 0.00 0.00 3.84
4547 5552 1.822371 TGCCTGTCTGCTTACATCGTA 59.178 47.619 0.00 0.00 0.00 3.43
4548 5553 2.430694 TGCCTGTCTGCTTACATCGTAT 59.569 45.455 0.00 0.00 0.00 3.06
4549 5554 2.797156 GCCTGTCTGCTTACATCGTATG 59.203 50.000 0.00 0.00 0.00 2.39
4550 5555 2.797156 CCTGTCTGCTTACATCGTATGC 59.203 50.000 5.36 5.36 0.00 3.14
4586 5591 0.664166 GTACGCGTCCGAGTTCCAAA 60.664 55.000 18.63 0.00 38.29 3.28
4587 5592 0.244450 TACGCGTCCGAGTTCCAAAT 59.756 50.000 18.63 0.00 38.29 2.32
4588 5593 0.601841 ACGCGTCCGAGTTCCAAATT 60.602 50.000 5.58 0.00 38.29 1.82
4589 5594 0.094730 CGCGTCCGAGTTCCAAATTC 59.905 55.000 0.00 0.00 36.29 2.17
4590 5595 0.446616 GCGTCCGAGTTCCAAATTCC 59.553 55.000 0.00 0.00 0.00 3.01
4591 5596 1.803334 CGTCCGAGTTCCAAATTCCA 58.197 50.000 0.00 0.00 0.00 3.53
4592 5597 2.147958 CGTCCGAGTTCCAAATTCCAA 58.852 47.619 0.00 0.00 0.00 3.53
4650 5655 7.172703 CGTAAGTTGGTTTTACTTTGAGGAGAT 59.827 37.037 0.00 0.00 37.12 2.75
4662 5667 0.317436 GAGGAGATGAGCAGCGTACG 60.317 60.000 11.84 11.84 0.00 3.67
4738 5752 2.191128 AGCAGACCATGGAACTGAAC 57.809 50.000 31.56 21.00 34.07 3.18
4739 5753 1.421268 AGCAGACCATGGAACTGAACA 59.579 47.619 31.56 0.00 34.07 3.18
4932 5986 2.355718 CTTTTGCGGCCGGGTTTG 60.356 61.111 29.38 0.00 0.00 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.438087 TGTACGCTTTAACTAGACGCTCT 59.562 43.478 0.00 0.00 0.00 4.09
2 3 3.541523 GTGTACGCTTTAACTAGACGCTC 59.458 47.826 0.00 0.00 0.00 5.03
3 4 3.496155 GTGTACGCTTTAACTAGACGCT 58.504 45.455 0.00 0.00 0.00 5.07
4 5 2.274740 CGTGTACGCTTTAACTAGACGC 59.725 50.000 4.67 0.00 0.00 5.19
22 807 2.726691 CCGTTCTAGCCGTTGCGTG 61.727 63.158 1.80 0.00 44.33 5.34
180 965 6.237622 CCGAAATTTGTGCACACATGATATTG 60.238 38.462 21.56 9.71 41.52 1.90
182 967 5.105797 ACCGAAATTTGTGCACACATGATAT 60.106 36.000 21.56 6.30 41.52 1.63
183 968 4.217334 ACCGAAATTTGTGCACACATGATA 59.783 37.500 21.56 0.00 41.52 2.15
189 974 1.601914 GGGACCGAAATTTGTGCACAC 60.602 52.381 21.56 6.69 0.00 3.82
193 978 1.068541 GTGAGGGACCGAAATTTGTGC 60.069 52.381 0.00 0.00 0.00 4.57
199 984 0.322546 GGCTTGTGAGGGACCGAAAT 60.323 55.000 0.00 0.00 0.00 2.17
212 997 2.057137 ACACATTGTCACTGGCTTGT 57.943 45.000 0.00 0.00 0.00 3.16
217 1002 7.899178 TGTAGTAATTACACATTGTCACTGG 57.101 36.000 17.65 0.00 37.35 4.00
340 1125 1.202710 TGCGCCTCTGAGTTTTAACCA 60.203 47.619 4.18 0.00 0.00 3.67
341 1126 1.519408 TGCGCCTCTGAGTTTTAACC 58.481 50.000 4.18 0.00 0.00 2.85
343 1128 3.407698 TCATTGCGCCTCTGAGTTTTAA 58.592 40.909 4.18 0.00 0.00 1.52
344 1129 3.052455 TCATTGCGCCTCTGAGTTTTA 57.948 42.857 4.18 0.00 0.00 1.52
345 1130 1.896220 TCATTGCGCCTCTGAGTTTT 58.104 45.000 4.18 0.00 0.00 2.43
346 1131 1.808945 CTTCATTGCGCCTCTGAGTTT 59.191 47.619 4.18 0.00 0.00 2.66
347 1132 1.446907 CTTCATTGCGCCTCTGAGTT 58.553 50.000 4.18 0.00 0.00 3.01
348 1133 0.392193 CCTTCATTGCGCCTCTGAGT 60.392 55.000 4.18 0.00 0.00 3.41
349 1134 0.107993 TCCTTCATTGCGCCTCTGAG 60.108 55.000 4.18 0.00 0.00 3.35
350 1135 0.107993 CTCCTTCATTGCGCCTCTGA 60.108 55.000 4.18 1.69 0.00 3.27
351 1136 0.107993 TCTCCTTCATTGCGCCTCTG 60.108 55.000 4.18 0.00 0.00 3.35
352 1137 0.615331 TTCTCCTTCATTGCGCCTCT 59.385 50.000 4.18 0.00 0.00 3.69
353 1138 1.453155 TTTCTCCTTCATTGCGCCTC 58.547 50.000 4.18 0.00 0.00 4.70
354 1139 1.541588 GTTTTCTCCTTCATTGCGCCT 59.458 47.619 4.18 0.00 0.00 5.52
355 1140 1.729149 CGTTTTCTCCTTCATTGCGCC 60.729 52.381 4.18 0.00 0.00 6.53
356 1141 1.606606 CGTTTTCTCCTTCATTGCGC 58.393 50.000 0.00 0.00 0.00 6.09
357 1142 1.804151 TCCGTTTTCTCCTTCATTGCG 59.196 47.619 0.00 0.00 0.00 4.85
358 1143 2.162408 CCTCCGTTTTCTCCTTCATTGC 59.838 50.000 0.00 0.00 0.00 3.56
359 1144 3.412386 ACCTCCGTTTTCTCCTTCATTG 58.588 45.455 0.00 0.00 0.00 2.82
360 1145 3.790089 ACCTCCGTTTTCTCCTTCATT 57.210 42.857 0.00 0.00 0.00 2.57
361 1146 3.790089 AACCTCCGTTTTCTCCTTCAT 57.210 42.857 0.00 0.00 0.00 2.57
362 1147 4.102054 AGTTAACCTCCGTTTTCTCCTTCA 59.898 41.667 0.88 0.00 33.17 3.02
363 1148 4.639334 AGTTAACCTCCGTTTTCTCCTTC 58.361 43.478 0.88 0.00 33.17 3.46
364 1149 4.701651 AGTTAACCTCCGTTTTCTCCTT 57.298 40.909 0.88 0.00 33.17 3.36
365 1150 4.222366 CCTAGTTAACCTCCGTTTTCTCCT 59.778 45.833 0.88 0.00 33.17 3.69
366 1151 4.502016 CCTAGTTAACCTCCGTTTTCTCC 58.498 47.826 0.88 0.00 33.17 3.71
367 1152 4.502016 CCCTAGTTAACCTCCGTTTTCTC 58.498 47.826 0.88 0.00 33.17 2.87
368 1153 3.307269 GCCCTAGTTAACCTCCGTTTTCT 60.307 47.826 0.88 0.00 33.17 2.52
369 1154 3.005554 GCCCTAGTTAACCTCCGTTTTC 58.994 50.000 0.88 0.00 33.17 2.29
370 1155 2.372837 TGCCCTAGTTAACCTCCGTTTT 59.627 45.455 0.88 0.00 33.17 2.43
371 1156 1.980036 TGCCCTAGTTAACCTCCGTTT 59.020 47.619 0.88 0.00 33.17 3.60
372 1157 1.648116 TGCCCTAGTTAACCTCCGTT 58.352 50.000 0.88 0.00 35.90 4.44
373 1158 1.648116 TTGCCCTAGTTAACCTCCGT 58.352 50.000 0.88 0.00 0.00 4.69
374 1159 4.618920 ATATTGCCCTAGTTAACCTCCG 57.381 45.455 0.88 0.00 0.00 4.63
375 1160 9.614792 CATTATATATTGCCCTAGTTAACCTCC 57.385 37.037 0.88 0.00 0.00 4.30
421 1206 6.255950 GTGCCTAAATTACCTCGTCATTTTC 58.744 40.000 0.00 0.00 0.00 2.29
429 1215 7.383687 TGATAATAGGTGCCTAAATTACCTCG 58.616 38.462 1.67 0.00 43.47 4.63
450 1236 5.324409 AGTGTTTTTGCTCCCTTCATGATA 58.676 37.500 0.00 0.00 0.00 2.15
485 1277 9.430623 GATCTCTGGGTTTATAGCTCTATTTTC 57.569 37.037 0.00 0.00 0.00 2.29
519 1313 2.091541 CCATGGGATTGTGCTTTACGT 58.908 47.619 2.85 0.00 0.00 3.57
822 1623 4.072088 CGCTGACGGTGAAACGGC 62.072 66.667 0.00 0.00 41.39 5.68
919 1724 0.252467 AGGGACTGGGAGGAGACAAG 60.252 60.000 0.00 0.00 37.18 3.16
921 1726 3.620903 AGGGACTGGGAGGAGACA 58.379 61.111 0.00 0.00 37.18 3.41
1028 1837 0.041238 AGGAGATGGACACGGAGGAA 59.959 55.000 0.00 0.00 0.00 3.36
1055 1864 3.699955 CTTCGCCATGTCGCCGAGA 62.700 63.158 0.00 0.00 32.14 4.04
1056 1865 3.257561 CTTCGCCATGTCGCCGAG 61.258 66.667 0.00 0.00 32.14 4.63
1057 1866 4.812476 CCTTCGCCATGTCGCCGA 62.812 66.667 0.00 0.00 0.00 5.54
1186 1995 1.775459 AGAGATAGAGGAGGGCACGTA 59.225 52.381 0.00 0.00 0.00 3.57
1187 1996 0.553819 AGAGATAGAGGAGGGCACGT 59.446 55.000 0.00 0.00 0.00 4.49
1234 2047 2.258013 CCAGCCGGCGTCAAGAAAA 61.258 57.895 23.20 0.00 0.00 2.29
1257 2070 3.426568 GCCTGAGCGCAGACCAAC 61.427 66.667 19.95 0.00 45.17 3.77
1365 2178 1.817209 GATGGTCTCCCTCCACGAC 59.183 63.158 0.00 0.00 37.81 4.34
1368 2181 1.381327 TCCGATGGTCTCCCTCCAC 60.381 63.158 0.00 0.00 37.81 4.02
1467 2282 2.112198 GCATGTCCCGCGGATTTCA 61.112 57.895 30.73 19.27 32.73 2.69
1476 2291 1.750399 CCCTTTCCTGCATGTCCCG 60.750 63.158 0.00 0.00 0.00 5.14
1488 2303 4.464947 AGTATTAATGAGCTGCCCCTTTC 58.535 43.478 0.00 0.00 0.00 2.62
1499 2314 9.557338 GCCGTATGTAGTAGAAGTATTAATGAG 57.443 37.037 0.00 0.00 0.00 2.90
1511 2326 1.871676 CTGAGCGCCGTATGTAGTAGA 59.128 52.381 2.29 0.00 0.00 2.59
1530 2345 4.641989 ACAGAACAAAAACAGAGCACATCT 59.358 37.500 0.00 0.00 39.56 2.90
1723 2553 0.682209 ATGTGATCTGCCCAACAGCC 60.682 55.000 0.00 0.00 46.76 4.85
1937 2785 3.190874 CGATTTCTGAGGCTGGTACTTC 58.809 50.000 0.00 0.00 0.00 3.01
1958 2806 6.973474 CACTTGTAGGAGTAGTATGTGCTTAC 59.027 42.308 0.00 0.00 0.00 2.34
1959 2807 6.662234 ACACTTGTAGGAGTAGTATGTGCTTA 59.338 38.462 0.00 0.00 0.00 3.09
1960 2808 5.480772 ACACTTGTAGGAGTAGTATGTGCTT 59.519 40.000 0.00 0.00 0.00 3.91
1961 2809 5.017490 ACACTTGTAGGAGTAGTATGTGCT 58.983 41.667 0.00 0.00 0.00 4.40
1962 2810 5.326200 ACACTTGTAGGAGTAGTATGTGC 57.674 43.478 0.00 0.00 0.00 4.57
1963 2811 7.328737 GTGAAACACTTGTAGGAGTAGTATGTG 59.671 40.741 0.00 0.00 36.32 3.21
1964 2812 7.232941 AGTGAAACACTTGTAGGAGTAGTATGT 59.767 37.037 0.00 0.00 42.59 2.29
1965 2813 7.603651 AGTGAAACACTTGTAGGAGTAGTATG 58.396 38.462 0.00 0.00 42.59 2.39
1966 2814 7.778185 AGTGAAACACTTGTAGGAGTAGTAT 57.222 36.000 0.00 0.00 42.59 2.12
1967 2815 7.941238 AGTAGTGAAACACTTGTAGGAGTAGTA 59.059 37.037 9.63 0.00 42.59 1.82
1968 2816 6.776603 AGTAGTGAAACACTTGTAGGAGTAGT 59.223 38.462 9.63 0.00 42.59 2.73
1969 2817 7.216973 AGTAGTGAAACACTTGTAGGAGTAG 57.783 40.000 9.63 0.00 42.59 2.57
1970 2818 7.431249 CAAGTAGTGAAACACTTGTAGGAGTA 58.569 38.462 9.63 0.00 42.59 2.59
1971 2819 6.281405 CAAGTAGTGAAACACTTGTAGGAGT 58.719 40.000 9.63 0.00 42.59 3.85
1972 2820 6.771188 CAAGTAGTGAAACACTTGTAGGAG 57.229 41.667 9.63 0.00 42.59 3.69
1979 2827 7.404671 AAATCCAACAAGTAGTGAAACACTT 57.595 32.000 9.63 0.00 42.59 3.16
1981 2829 9.016623 GTTAAAATCCAACAAGTAGTGAAACAC 57.983 33.333 0.00 0.00 41.43 3.32
1982 2830 8.962679 AGTTAAAATCCAACAAGTAGTGAAACA 58.037 29.630 0.00 0.00 41.43 2.83
1986 2834 9.616156 TGTTAGTTAAAATCCAACAAGTAGTGA 57.384 29.630 0.00 0.00 0.00 3.41
1987 2835 9.878599 CTGTTAGTTAAAATCCAACAAGTAGTG 57.121 33.333 0.00 0.00 0.00 2.74
1988 2836 9.623000 ACTGTTAGTTAAAATCCAACAAGTAGT 57.377 29.630 0.00 0.00 0.00 2.73
1989 2837 9.878599 CACTGTTAGTTAAAATCCAACAAGTAG 57.121 33.333 0.00 0.00 0.00 2.57
1990 2838 8.347035 GCACTGTTAGTTAAAATCCAACAAGTA 58.653 33.333 0.00 0.00 0.00 2.24
1991 2839 7.147983 TGCACTGTTAGTTAAAATCCAACAAGT 60.148 33.333 0.00 0.00 0.00 3.16
1992 2840 7.199766 TGCACTGTTAGTTAAAATCCAACAAG 58.800 34.615 0.00 0.00 0.00 3.16
1993 2841 7.067615 TCTGCACTGTTAGTTAAAATCCAACAA 59.932 33.333 0.00 0.00 0.00 2.83
1994 2842 6.544197 TCTGCACTGTTAGTTAAAATCCAACA 59.456 34.615 0.00 0.00 0.00 3.33
1995 2843 6.966021 TCTGCACTGTTAGTTAAAATCCAAC 58.034 36.000 0.00 0.00 0.00 3.77
1996 2844 6.293955 GCTCTGCACTGTTAGTTAAAATCCAA 60.294 38.462 0.00 0.00 0.00 3.53
1997 2845 5.181245 GCTCTGCACTGTTAGTTAAAATCCA 59.819 40.000 0.00 0.00 0.00 3.41
1998 2846 5.181245 TGCTCTGCACTGTTAGTTAAAATCC 59.819 40.000 0.00 0.00 31.71 3.01
1999 2847 6.241207 TGCTCTGCACTGTTAGTTAAAATC 57.759 37.500 0.00 0.00 31.71 2.17
2000 2848 6.824305 ATGCTCTGCACTGTTAGTTAAAAT 57.176 33.333 0.00 0.00 43.04 1.82
2001 2849 6.437928 CAATGCTCTGCACTGTTAGTTAAAA 58.562 36.000 0.00 0.00 43.04 1.52
2002 2850 5.562696 GCAATGCTCTGCACTGTTAGTTAAA 60.563 40.000 0.00 0.00 43.04 1.52
2003 2851 4.083324 GCAATGCTCTGCACTGTTAGTTAA 60.083 41.667 0.00 0.00 43.04 2.01
2004 2852 3.436704 GCAATGCTCTGCACTGTTAGTTA 59.563 43.478 0.00 0.00 43.04 2.24
2005 2853 2.227388 GCAATGCTCTGCACTGTTAGTT 59.773 45.455 0.00 0.00 43.04 2.24
2006 2854 1.808945 GCAATGCTCTGCACTGTTAGT 59.191 47.619 0.00 0.00 43.04 2.24
2007 2855 2.539346 GCAATGCTCTGCACTGTTAG 57.461 50.000 0.00 0.00 43.04 2.34
2015 2863 1.203994 AGAACCAATGCAATGCTCTGC 59.796 47.619 6.82 3.89 42.95 4.26
2016 2864 3.192844 AGAAGAACCAATGCAATGCTCTG 59.807 43.478 6.82 3.44 0.00 3.35
2017 2865 3.192844 CAGAAGAACCAATGCAATGCTCT 59.807 43.478 6.82 0.00 0.00 4.09
2018 2866 3.508762 CAGAAGAACCAATGCAATGCTC 58.491 45.455 6.82 0.00 0.00 4.26
2019 2867 2.232941 CCAGAAGAACCAATGCAATGCT 59.767 45.455 6.82 0.00 0.00 3.79
2020 2868 2.613691 CCAGAAGAACCAATGCAATGC 58.386 47.619 0.00 0.00 0.00 3.56
2021 2869 2.232941 AGCCAGAAGAACCAATGCAATG 59.767 45.455 0.00 0.00 0.00 2.82
2022 2870 2.494870 GAGCCAGAAGAACCAATGCAAT 59.505 45.455 0.00 0.00 0.00 3.56
2023 2871 1.888512 GAGCCAGAAGAACCAATGCAA 59.111 47.619 0.00 0.00 0.00 4.08
2024 2872 1.074405 AGAGCCAGAAGAACCAATGCA 59.926 47.619 0.00 0.00 0.00 3.96
2025 2873 1.831580 AGAGCCAGAAGAACCAATGC 58.168 50.000 0.00 0.00 0.00 3.56
2026 2874 3.937706 CTGTAGAGCCAGAAGAACCAATG 59.062 47.826 0.00 0.00 34.23 2.82
2027 2875 3.054802 CCTGTAGAGCCAGAAGAACCAAT 60.055 47.826 0.00 0.00 34.23 3.16
2028 2876 2.303022 CCTGTAGAGCCAGAAGAACCAA 59.697 50.000 0.00 0.00 34.23 3.67
2029 2877 1.902508 CCTGTAGAGCCAGAAGAACCA 59.097 52.381 0.00 0.00 34.23 3.67
2030 2878 1.903183 ACCTGTAGAGCCAGAAGAACC 59.097 52.381 0.00 0.00 34.23 3.62
2031 2879 3.591023 GAACCTGTAGAGCCAGAAGAAC 58.409 50.000 0.00 0.00 34.23 3.01
2032 2880 2.231478 CGAACCTGTAGAGCCAGAAGAA 59.769 50.000 0.00 0.00 34.23 2.52
2033 2881 1.819288 CGAACCTGTAGAGCCAGAAGA 59.181 52.381 0.00 0.00 34.23 2.87
2034 2882 1.546476 ACGAACCTGTAGAGCCAGAAG 59.454 52.381 0.00 0.00 34.23 2.85
2035 2883 1.272490 CACGAACCTGTAGAGCCAGAA 59.728 52.381 0.00 0.00 34.23 3.02
2036 2884 0.888619 CACGAACCTGTAGAGCCAGA 59.111 55.000 0.00 0.00 34.23 3.86
2037 2885 0.737715 GCACGAACCTGTAGAGCCAG 60.738 60.000 0.00 0.00 0.00 4.85
2038 2886 1.292223 GCACGAACCTGTAGAGCCA 59.708 57.895 0.00 0.00 0.00 4.75
2039 2887 1.805945 CGCACGAACCTGTAGAGCC 60.806 63.158 0.00 0.00 0.00 4.70
2040 2888 1.805945 CCGCACGAACCTGTAGAGC 60.806 63.158 0.00 0.00 0.00 4.09
2041 2889 0.038526 AACCGCACGAACCTGTAGAG 60.039 55.000 0.00 0.00 0.00 2.43
2042 2890 0.038892 GAACCGCACGAACCTGTAGA 60.039 55.000 0.00 0.00 0.00 2.59
2043 2891 1.012486 GGAACCGCACGAACCTGTAG 61.012 60.000 0.00 0.00 0.00 2.74
2044 2892 1.005867 GGAACCGCACGAACCTGTA 60.006 57.895 0.00 0.00 0.00 2.74
2045 2893 2.280592 GGAACCGCACGAACCTGT 60.281 61.111 0.00 0.00 0.00 4.00
2046 2894 2.030562 AGGAACCGCACGAACCTG 59.969 61.111 0.00 0.00 0.00 4.00
2047 2895 2.030562 CAGGAACCGCACGAACCT 59.969 61.111 0.00 0.00 0.00 3.50
2048 2896 3.047877 CCAGGAACCGCACGAACC 61.048 66.667 0.00 0.00 0.00 3.62
2148 2996 1.560146 GGGTAGAGGGGAGTGAAAAGG 59.440 57.143 0.00 0.00 0.00 3.11
2150 2998 1.665137 GGGGTAGAGGGGAGTGAAAA 58.335 55.000 0.00 0.00 0.00 2.29
2151 2999 0.616679 CGGGGTAGAGGGGAGTGAAA 60.617 60.000 0.00 0.00 0.00 2.69
2153 3001 1.807771 AACGGGGTAGAGGGGAGTGA 61.808 60.000 0.00 0.00 0.00 3.41
2160 3008 0.816825 TCGATCGAACGGGGTAGAGG 60.817 60.000 16.99 0.00 0.00 3.69
2175 3023 2.116238 TCCCTTTCCCTTTCGATCGAT 58.884 47.619 20.18 0.00 0.00 3.59
2213 3061 2.358615 GATGCGACCACCACTGCA 60.359 61.111 0.00 0.00 42.22 4.41
2219 3067 3.272334 GGATGCGATGCGACCACC 61.272 66.667 0.00 0.00 0.00 4.61
2245 3111 4.680237 CAGTCCGTCGCAGGGCAA 62.680 66.667 3.57 0.00 38.64 4.52
2335 3206 0.395311 CAGCCAGGGATTCATGTGCT 60.395 55.000 0.00 0.00 33.72 4.40
2469 3363 1.157870 AGCACACGGAAGACAAACGG 61.158 55.000 0.00 0.00 0.00 4.44
2484 3378 2.380410 CGCTTGACCCACGTAGCAC 61.380 63.158 6.56 0.00 33.29 4.40
2530 3436 1.274167 TCATGGTCGGTAAAGCGAACT 59.726 47.619 19.00 3.91 0.00 3.01
2544 3459 3.136123 GCAGCGTGGCATCATGGT 61.136 61.111 0.00 0.00 40.83 3.55
2592 3507 1.659794 CAAACCCAAACAGCTCGGG 59.340 57.895 5.64 5.64 46.22 5.14
2593 3508 1.007387 GCAAACCCAAACAGCTCGG 60.007 57.895 0.00 0.00 0.00 4.63
2594 3509 1.370414 CGCAAACCCAAACAGCTCG 60.370 57.895 0.00 0.00 0.00 5.03
2595 3510 1.661509 GCGCAAACCCAAACAGCTC 60.662 57.895 0.30 0.00 0.00 4.09
2596 3511 2.354074 CTGCGCAAACCCAAACAGCT 62.354 55.000 13.05 0.00 0.00 4.24
2599 3514 2.790791 CCCTGCGCAAACCCAAACA 61.791 57.895 13.05 0.00 0.00 2.83
2600 3515 2.028925 CCCTGCGCAAACCCAAAC 59.971 61.111 13.05 0.00 0.00 2.93
2601 3516 2.443016 ACCCTGCGCAAACCCAAA 60.443 55.556 13.05 0.00 0.00 3.28
2602 3517 2.909965 GACCCTGCGCAAACCCAA 60.910 61.111 13.05 0.00 0.00 4.12
2657 3572 1.818674 GAGTGCGGAACCCAATCATTT 59.181 47.619 0.00 0.00 0.00 2.32
2672 3587 4.410743 GCTGGGCAAAGCGAGTGC 62.411 66.667 1.18 1.18 41.45 4.40
2687 3602 2.263741 CCTTGCTTTCCACGCAGCT 61.264 57.895 0.00 0.00 38.80 4.24
2705 3620 0.318784 CAGATTCTACTACGGCCGCC 60.319 60.000 28.58 0.00 0.00 6.13
2706 3621 0.940047 GCAGATTCTACTACGGCCGC 60.940 60.000 28.58 5.08 0.00 6.53
2707 3622 0.384309 TGCAGATTCTACTACGGCCG 59.616 55.000 26.86 26.86 0.00 6.13
2743 3658 3.450817 CCATACCACCATACAGACAGACA 59.549 47.826 0.00 0.00 0.00 3.41
2744 3659 3.181465 CCCATACCACCATACAGACAGAC 60.181 52.174 0.00 0.00 0.00 3.51
2745 3660 3.038280 CCCATACCACCATACAGACAGA 58.962 50.000 0.00 0.00 0.00 3.41
2746 3661 2.104792 CCCCATACCACCATACAGACAG 59.895 54.545 0.00 0.00 0.00 3.51
2848 3763 0.035152 ATCTTGAGCGTGCCCATCAA 60.035 50.000 0.00 0.00 0.00 2.57
2922 3837 1.759445 CACATGACGGAGAAGAGGGAT 59.241 52.381 0.00 0.00 0.00 3.85
2993 3908 4.160252 TCACAAGAGAGTACATGCTGCATA 59.840 41.667 15.78 0.00 0.00 3.14
2996 3911 2.928757 CTCACAAGAGAGTACATGCTGC 59.071 50.000 0.00 0.00 44.98 5.25
2997 3912 3.925299 CACTCACAAGAGAGTACATGCTG 59.075 47.826 0.00 0.00 46.65 4.41
2998 3913 3.056250 CCACTCACAAGAGAGTACATGCT 60.056 47.826 0.00 0.00 46.65 3.79
3001 3916 2.899900 TGCCACTCACAAGAGAGTACAT 59.100 45.455 0.00 0.00 46.65 2.29
3002 3917 2.316108 TGCCACTCACAAGAGAGTACA 58.684 47.619 0.00 0.33 46.65 2.90
3003 3918 3.243907 ACTTGCCACTCACAAGAGAGTAC 60.244 47.826 10.26 0.00 46.65 2.73
3004 3919 2.965831 ACTTGCCACTCACAAGAGAGTA 59.034 45.455 10.26 0.00 46.65 2.59
3007 3922 1.202687 CCACTTGCCACTCACAAGAGA 60.203 52.381 10.26 0.00 45.99 3.10
3016 3931 2.592102 ACATGATTCCACTTGCCACT 57.408 45.000 0.00 0.00 0.00 4.00
3053 3975 2.624838 ACTCCCTGTTGCAAATCACAAG 59.375 45.455 0.00 0.00 0.00 3.16
3056 3978 1.336240 GCACTCCCTGTTGCAAATCAC 60.336 52.381 0.00 0.00 0.00 3.06
3059 3981 1.959085 CGCACTCCCTGTTGCAAAT 59.041 52.632 0.00 0.00 0.00 2.32
3501 4432 0.968393 GAGGAGAGGGCGTCTTCTGT 60.968 60.000 22.14 0.00 41.87 3.41
3669 4609 2.481952 GCGGTAGGTTATCTCGTCGTAT 59.518 50.000 0.00 0.00 0.00 3.06
3877 4823 1.583967 CGAAGACGCTCGATCGCTT 60.584 57.895 11.09 12.50 41.44 4.68
4006 4964 3.735237 TGGCTCGATTCAGAAGGTATC 57.265 47.619 0.00 0.00 0.00 2.24
4110 5068 9.381038 AGGGAGTATTTACTAGCAATCTATCAA 57.619 33.333 0.00 0.00 36.50 2.57
4129 5129 9.512588 CTCTTATATTAGTTTACGGAGGGAGTA 57.487 37.037 0.00 0.00 0.00 2.59
4130 5130 8.003629 ACTCTTATATTAGTTTACGGAGGGAGT 58.996 37.037 0.00 0.00 0.00 3.85
4131 5131 8.298140 CACTCTTATATTAGTTTACGGAGGGAG 58.702 40.741 0.00 0.00 0.00 4.30
4132 5132 7.781693 ACACTCTTATATTAGTTTACGGAGGGA 59.218 37.037 0.00 0.00 0.00 4.20
4133 5133 7.949434 ACACTCTTATATTAGTTTACGGAGGG 58.051 38.462 0.00 0.00 0.00 4.30
4134 5134 9.813446 AAACACTCTTATATTAGTTTACGGAGG 57.187 33.333 0.00 0.00 0.00 4.30
4152 5152 9.915629 CTGTAAACTTAGTGATCTAAACACTCT 57.084 33.333 0.00 0.00 45.58 3.24
4153 5153 9.909644 TCTGTAAACTTAGTGATCTAAACACTC 57.090 33.333 0.00 0.00 45.58 3.51
4155 5155 9.141400 CCTCTGTAAACTTAGTGATCTAAACAC 57.859 37.037 0.00 0.00 35.98 3.32
4156 5156 8.311836 CCCTCTGTAAACTTAGTGATCTAAACA 58.688 37.037 0.00 0.00 35.98 2.83
4157 5157 8.529476 TCCCTCTGTAAACTTAGTGATCTAAAC 58.471 37.037 0.00 0.00 35.98 2.01
4158 5158 8.660295 TCCCTCTGTAAACTTAGTGATCTAAA 57.340 34.615 0.00 0.00 35.98 1.85
4159 5159 7.894364 ACTCCCTCTGTAAACTTAGTGATCTAA 59.106 37.037 0.00 0.00 35.25 2.10
4160 5160 7.411808 ACTCCCTCTGTAAACTTAGTGATCTA 58.588 38.462 0.00 0.00 0.00 1.98
4161 5161 6.257586 ACTCCCTCTGTAAACTTAGTGATCT 58.742 40.000 0.00 0.00 0.00 2.75
4162 5162 6.532988 ACTCCCTCTGTAAACTTAGTGATC 57.467 41.667 0.00 0.00 0.00 2.92
4163 5163 8.611051 AATACTCCCTCTGTAAACTTAGTGAT 57.389 34.615 0.00 0.00 0.00 3.06
4164 5164 8.431910 AAATACTCCCTCTGTAAACTTAGTGA 57.568 34.615 0.00 0.00 0.00 3.41
4165 5165 9.583765 GTAAATACTCCCTCTGTAAACTTAGTG 57.416 37.037 0.00 0.00 0.00 2.74
4166 5166 8.756927 GGTAAATACTCCCTCTGTAAACTTAGT 58.243 37.037 0.00 0.00 0.00 2.24
4167 5167 8.755977 TGGTAAATACTCCCTCTGTAAACTTAG 58.244 37.037 0.00 0.00 0.00 2.18
4168 5168 8.669055 TGGTAAATACTCCCTCTGTAAACTTA 57.331 34.615 0.00 0.00 0.00 2.24
4169 5169 7.563724 TGGTAAATACTCCCTCTGTAAACTT 57.436 36.000 0.00 0.00 0.00 2.66
4170 5170 7.237055 AGTTGGTAAATACTCCCTCTGTAAACT 59.763 37.037 0.00 0.00 0.00 2.66
4171 5171 7.392418 AGTTGGTAAATACTCCCTCTGTAAAC 58.608 38.462 0.00 0.00 0.00 2.01
4172 5172 7.563724 AGTTGGTAAATACTCCCTCTGTAAA 57.436 36.000 0.00 0.00 0.00 2.01
4173 5173 7.563724 AAGTTGGTAAATACTCCCTCTGTAA 57.436 36.000 0.00 0.00 0.00 2.41
4174 5174 7.236019 TGAAAGTTGGTAAATACTCCCTCTGTA 59.764 37.037 0.00 0.00 0.00 2.74
4175 5175 6.043938 TGAAAGTTGGTAAATACTCCCTCTGT 59.956 38.462 0.00 0.00 0.00 3.41
4176 5176 6.371825 GTGAAAGTTGGTAAATACTCCCTCTG 59.628 42.308 0.00 0.00 0.00 3.35
4177 5177 6.272558 AGTGAAAGTTGGTAAATACTCCCTCT 59.727 38.462 0.00 0.00 0.00 3.69
4178 5178 6.473758 AGTGAAAGTTGGTAAATACTCCCTC 58.526 40.000 0.00 0.00 0.00 4.30
4179 5179 6.272558 AGAGTGAAAGTTGGTAAATACTCCCT 59.727 38.462 0.00 0.00 35.19 4.20
4180 5180 6.473758 AGAGTGAAAGTTGGTAAATACTCCC 58.526 40.000 0.00 0.00 35.19 4.30
4181 5181 7.981102 AAGAGTGAAAGTTGGTAAATACTCC 57.019 36.000 0.00 0.00 35.19 3.85
4182 5182 8.645487 CGTAAGAGTGAAAGTTGGTAAATACTC 58.355 37.037 0.00 0.00 43.02 2.59
4183 5183 8.146412 ACGTAAGAGTGAAAGTTGGTAAATACT 58.854 33.333 0.00 0.00 43.62 2.12
4184 5184 8.302965 ACGTAAGAGTGAAAGTTGGTAAATAC 57.697 34.615 0.00 0.00 43.62 1.89
4238 5239 0.171007 CGCCCCGAACGTAAGAGTAA 59.829 55.000 0.00 0.00 43.62 2.24
4256 5257 2.390599 CCAACCATGCAGACGTCCG 61.391 63.158 13.01 2.36 0.00 4.79
4268 5269 2.122167 GGCACCGTTTGACCAACCA 61.122 57.895 0.00 0.00 30.65 3.67
4269 5270 1.460273 ATGGCACCGTTTGACCAACC 61.460 55.000 0.00 0.00 35.73 3.77
4314 5315 1.996786 GCATGGCACCCGTTCATCAG 61.997 60.000 0.00 0.00 0.00 2.90
4316 5317 1.386525 ATGCATGGCACCCGTTCATC 61.387 55.000 0.00 0.00 43.04 2.92
4317 5318 1.380246 ATGCATGGCACCCGTTCAT 60.380 52.632 0.00 0.00 43.04 2.57
4318 5319 2.035469 ATGCATGGCACCCGTTCA 59.965 55.556 0.00 0.00 43.04 3.18
4319 5320 2.045708 TCATGCATGGCACCCGTTC 61.046 57.895 25.97 0.00 43.04 3.95
4321 5322 2.751436 GTCATGCATGGCACCCGT 60.751 61.111 26.04 0.00 43.04 5.28
4322 5323 2.438975 AGTCATGCATGGCACCCG 60.439 61.111 31.47 2.64 43.04 5.28
4323 5324 2.475466 CGAGTCATGCATGGCACCC 61.475 63.158 31.47 18.68 43.04 4.61
4324 5325 3.104766 CGAGTCATGCATGGCACC 58.895 61.111 31.47 21.01 43.04 5.01
4325 5326 2.110967 AGCGAGTCATGCATGGCAC 61.111 57.895 31.47 24.49 43.04 5.01
4326 5327 2.110352 CAGCGAGTCATGCATGGCA 61.110 57.895 31.47 9.11 44.86 4.92
4327 5328 2.713770 CAGCGAGTCATGCATGGC 59.286 61.111 23.79 23.79 33.85 4.40
4328 5329 0.531311 TAGCAGCGAGTCATGCATGG 60.531 55.000 25.97 11.31 45.01 3.66
4329 5330 0.859882 CTAGCAGCGAGTCATGCATG 59.140 55.000 21.07 21.07 45.01 4.06
4330 5331 0.879400 GCTAGCAGCGAGTCATGCAT 60.879 55.000 10.63 0.00 45.01 3.96
4331 5332 1.520120 GCTAGCAGCGAGTCATGCA 60.520 57.895 10.63 0.00 45.01 3.96
4332 5333 3.317847 GCTAGCAGCGAGTCATGC 58.682 61.111 10.63 8.87 42.87 4.06
4341 5342 0.463620 AGCCTGACTAAGCTAGCAGC 59.536 55.000 18.83 6.24 42.84 5.25
4342 5343 1.480137 ACAGCCTGACTAAGCTAGCAG 59.520 52.381 18.83 9.12 37.18 4.24
4343 5344 1.205655 CACAGCCTGACTAAGCTAGCA 59.794 52.381 18.83 0.00 37.18 3.49
4344 5345 1.478510 TCACAGCCTGACTAAGCTAGC 59.521 52.381 6.62 6.62 37.18 3.42
4379 5380 4.583426 GTTTCAAAAATTTCAACGGCCAC 58.417 39.130 2.24 0.00 0.00 5.01
4392 5393 1.288350 TCGTCTCGGCGTTTCAAAAA 58.712 45.000 6.85 0.00 0.00 1.94
4533 5538 5.195001 TGTATGCATACGATGTAAGCAGA 57.805 39.130 27.27 6.68 38.75 4.26
4586 5591 8.585018 AGAAAACAAATCGAAAGGTATTGGAAT 58.415 29.630 0.00 0.00 0.00 3.01
4587 5592 7.947282 AGAAAACAAATCGAAAGGTATTGGAA 58.053 30.769 0.00 0.00 0.00 3.53
4588 5593 7.308951 GGAGAAAACAAATCGAAAGGTATTGGA 60.309 37.037 0.00 0.00 0.00 3.53
4589 5594 6.806739 GGAGAAAACAAATCGAAAGGTATTGG 59.193 38.462 0.00 0.00 0.00 3.16
4590 5595 7.538678 CAGGAGAAAACAAATCGAAAGGTATTG 59.461 37.037 0.00 0.00 0.00 1.90
4591 5596 7.593825 CAGGAGAAAACAAATCGAAAGGTATT 58.406 34.615 0.00 0.00 0.00 1.89
4592 5597 6.349363 GCAGGAGAAAACAAATCGAAAGGTAT 60.349 38.462 0.00 0.00 0.00 2.73
4650 5655 4.435436 CCCTGCGTACGCTGCTCA 62.435 66.667 36.99 18.47 42.51 4.26
4662 5667 1.782028 AAAGCGTTCGTCAACCCTGC 61.782 55.000 0.00 0.00 0.00 4.85
4738 5752 0.729116 AGAAATGATGCGCTCCGTTG 59.271 50.000 9.73 0.00 0.00 4.10
4739 5753 1.453155 AAGAAATGATGCGCTCCGTT 58.547 45.000 9.73 5.05 0.00 4.44
4815 5857 2.767505 GGCTACCGCAATGCTTATACT 58.232 47.619 2.94 0.00 38.10 2.12
4932 5986 3.065233 TGCATATGGATCAACGAAAGCAC 59.935 43.478 4.56 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.