Multiple sequence alignment - TraesCS4B01G240000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G240000 chr4B 100.000 4262 0 0 1 4262 497859108 497863369 0.000000e+00 7871.0
1 TraesCS4B01G240000 chr4D 90.436 2823 144 72 496 3247 402231707 402234474 0.000000e+00 3602.0
2 TraesCS4B01G240000 chr4D 95.195 999 30 4 3281 4262 402234474 402235471 0.000000e+00 1563.0
3 TraesCS4B01G240000 chr4D 92.308 156 9 2 5 158 402231548 402231702 7.180000e-53 219.0
4 TraesCS4B01G240000 chr4A 92.964 1734 92 12 1088 2821 59670023 59671726 0.000000e+00 2499.0
5 TraesCS4B01G240000 chr4A 95.077 1503 41 14 2790 4262 59671733 59673232 0.000000e+00 2335.0
6 TraesCS4B01G240000 chr4A 86.505 578 32 13 496 1045 59669452 59670011 1.020000e-165 593.0
7 TraesCS4B01G240000 chr4A 93.796 274 14 3 160 430 185383795 185383522 3.970000e-110 409.0
8 TraesCS4B01G240000 chr4A 90.000 160 11 2 3 158 59669289 59669447 7.230000e-48 202.0
9 TraesCS4B01G240000 chr4A 91.379 58 5 0 439 496 607236317 607236260 3.530000e-11 80.5
10 TraesCS4B01G240000 chr6B 94.526 274 11 4 161 431 124390874 124390602 1.830000e-113 420.0
11 TraesCS4B01G240000 chr6A 94.505 273 14 1 159 430 9487033 9487305 1.830000e-113 420.0
12 TraesCS4B01G240000 chr6A 94.485 272 14 1 160 430 217267094 217266823 6.590000e-113 418.0
13 TraesCS4B01G240000 chr2B 94.526 274 11 4 160 430 94038302 94038574 1.830000e-113 420.0
14 TraesCS4B01G240000 chr2B 94.118 272 15 1 160 430 245687958 245688229 3.070000e-111 412.0
15 TraesCS4B01G240000 chr7B 94.505 273 11 4 160 429 480639987 480639716 6.590000e-113 418.0
16 TraesCS4B01G240000 chr3D 92.982 285 16 4 160 441 26660864 26660581 3.070000e-111 412.0
17 TraesCS4B01G240000 chr7D 93.796 274 15 2 159 430 208557843 208558116 1.100000e-110 411.0
18 TraesCS4B01G240000 chr1A 77.663 291 58 6 2315 2600 550111016 550111304 2.040000e-38 171.0
19 TraesCS4B01G240000 chr1B 78.601 243 45 6 2317 2554 627098788 627099028 2.050000e-33 154.0
20 TraesCS4B01G240000 chr1D 78.008 241 50 3 2317 2554 457530372 457530132 9.550000e-32 148.0
21 TraesCS4B01G240000 chr1D 89.474 57 6 0 439 495 414898511 414898455 5.910000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G240000 chr4B 497859108 497863369 4261 False 7871.000000 7871 100.000000 1 4262 1 chr4B.!!$F1 4261
1 TraesCS4B01G240000 chr4D 402231548 402235471 3923 False 1794.666667 3602 92.646333 5 4262 3 chr4D.!!$F1 4257
2 TraesCS4B01G240000 chr4A 59669289 59673232 3943 False 1407.250000 2499 91.136500 3 4262 4 chr4A.!!$F1 4259

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
412 416 0.033504 GTGCAGAGGACGGAAAGTGA 59.966 55.0 0.00 0.00 0.00 3.41 F
907 953 0.036164 AGTGCACCGTGCCAATAGAA 59.964 50.0 20.67 0.00 44.23 2.10 F
908 954 0.168128 GTGCACCGTGCCAATAGAAC 59.832 55.0 20.67 6.59 44.23 3.01 F
2284 2343 0.239082 TTCTTTGCTCGCATGCACTG 59.761 50.0 19.57 7.84 43.20 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1446 0.257328 TGACCTGGACAAAAGTGCCA 59.743 50.000 0.0 0.0 32.31 4.92 R
2477 2539 0.174845 CGTTCTCCCGTTCAGCCATA 59.825 55.000 0.0 0.0 0.00 2.74 R
2729 2791 1.555075 TCCATGTAGCCAAGTCTGTCC 59.445 52.381 0.0 0.0 0.00 4.02 R
3737 3912 1.201647 CAGAGTTCAAATGCAGCCCTG 59.798 52.381 0.0 0.0 0.00 4.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 4.266976 GCGTTAAATATGGATCGTATCGGG 59.733 45.833 0.00 0.00 0.00 5.14
64 65 7.693020 ACTATTTTTGCAAAATGTGGTGAAAC 58.307 30.769 24.39 0.00 0.00 2.78
74 75 3.073086 TGGTGAAACGTGACCACAG 57.927 52.632 9.67 0.00 37.32 3.66
84 85 6.762187 TGAAACGTGACCACAGTTCTAAAATA 59.238 34.615 0.00 0.00 31.44 1.40
116 117 2.107950 TCACCGCTTCACAAATAGGG 57.892 50.000 0.00 0.00 0.00 3.53
123 124 4.451900 CGCTTCACAAATAGGGGTTCTAT 58.548 43.478 0.00 0.00 40.23 1.98
127 131 7.224297 GCTTCACAAATAGGGGTTCTATGATA 58.776 38.462 0.00 0.00 38.60 2.15
131 135 8.597167 TCACAAATAGGGGTTCTATGATAGATG 58.403 37.037 2.54 0.00 38.60 2.90
162 166 6.811253 ACTCAAAATTTTCTATACGGTGCA 57.189 33.333 0.00 0.00 0.00 4.57
163 167 7.209471 ACTCAAAATTTTCTATACGGTGCAA 57.791 32.000 0.00 0.00 0.00 4.08
164 168 7.653647 ACTCAAAATTTTCTATACGGTGCAAA 58.346 30.769 0.00 0.00 0.00 3.68
165 169 7.807907 ACTCAAAATTTTCTATACGGTGCAAAG 59.192 33.333 0.00 0.00 0.00 2.77
166 170 7.877003 TCAAAATTTTCTATACGGTGCAAAGA 58.123 30.769 0.00 0.00 0.00 2.52
167 171 8.020819 TCAAAATTTTCTATACGGTGCAAAGAG 58.979 33.333 0.00 0.00 0.00 2.85
168 172 7.681939 AAATTTTCTATACGGTGCAAAGAGA 57.318 32.000 0.00 0.00 0.00 3.10
169 173 6.910536 ATTTTCTATACGGTGCAAAGAGAG 57.089 37.500 0.00 0.00 0.00 3.20
170 174 3.438297 TCTATACGGTGCAAAGAGAGC 57.562 47.619 0.00 0.00 0.00 4.09
171 175 2.100916 TCTATACGGTGCAAAGAGAGCC 59.899 50.000 0.00 0.00 0.00 4.70
172 176 0.905357 ATACGGTGCAAAGAGAGCCT 59.095 50.000 0.00 0.00 0.00 4.58
173 177 0.685097 TACGGTGCAAAGAGAGCCTT 59.315 50.000 0.00 0.00 36.47 4.35
174 178 0.886490 ACGGTGCAAAGAGAGCCTTG 60.886 55.000 0.00 0.00 34.79 3.61
175 179 1.580845 CGGTGCAAAGAGAGCCTTGG 61.581 60.000 0.00 0.00 34.79 3.61
177 181 4.412075 GCAAAGAGAGCCTTGGCT 57.588 55.556 14.69 14.69 46.15 4.75
178 182 2.178856 GCAAAGAGAGCCTTGGCTC 58.821 57.895 28.67 28.67 46.15 4.70
179 183 0.607489 GCAAAGAGAGCCTTGGCTCA 60.607 55.000 34.40 0.00 46.15 4.26
180 184 1.451067 CAAAGAGAGCCTTGGCTCAG 58.549 55.000 34.40 18.91 39.13 3.35
181 185 1.063183 AAAGAGAGCCTTGGCTCAGT 58.937 50.000 34.40 22.13 39.13 3.41
182 186 0.324285 AAGAGAGCCTTGGCTCAGTG 59.676 55.000 34.40 0.00 39.13 3.66
183 187 1.078567 GAGAGCCTTGGCTCAGTGG 60.079 63.158 34.40 0.00 39.13 4.00
184 188 1.835927 GAGAGCCTTGGCTCAGTGGT 61.836 60.000 34.40 19.17 39.13 4.16
185 189 1.073897 GAGCCTTGGCTCAGTGGTT 59.926 57.895 30.25 1.25 36.86 3.67
186 190 1.228367 AGCCTTGGCTCAGTGGTTG 60.228 57.895 8.56 0.00 0.00 3.77
187 191 2.270986 GCCTTGGCTCAGTGGTTGG 61.271 63.158 4.11 0.00 0.00 3.77
188 192 1.604593 CCTTGGCTCAGTGGTTGGG 60.605 63.158 0.00 0.00 0.00 4.12
193 197 3.281240 CTCAGTGGTTGGGCATGC 58.719 61.111 9.90 9.90 0.00 4.06
194 198 2.672651 TCAGTGGTTGGGCATGCG 60.673 61.111 12.44 0.00 0.00 4.73
195 199 2.985282 CAGTGGTTGGGCATGCGT 60.985 61.111 12.44 0.00 0.00 5.24
196 200 2.203480 AGTGGTTGGGCATGCGTT 60.203 55.556 12.44 0.00 0.00 4.84
197 201 2.049248 GTGGTTGGGCATGCGTTG 60.049 61.111 12.44 0.00 0.00 4.10
198 202 2.520500 TGGTTGGGCATGCGTTGT 60.521 55.556 12.44 0.00 0.00 3.32
199 203 2.049248 GGTTGGGCATGCGTTGTG 60.049 61.111 12.44 0.00 0.00 3.33
200 204 2.734346 GTTGGGCATGCGTTGTGC 60.734 61.111 12.44 0.00 46.70 4.57
209 213 4.152625 GCGTTGTGCAGCCTAGCG 62.153 66.667 0.00 0.00 45.45 4.26
210 214 2.432456 CGTTGTGCAGCCTAGCGA 60.432 61.111 0.00 0.00 37.31 4.93
211 215 2.730672 CGTTGTGCAGCCTAGCGAC 61.731 63.158 0.00 0.00 37.31 5.19
212 216 2.047274 TTGTGCAGCCTAGCGACC 60.047 61.111 0.00 0.00 37.31 4.79
213 217 3.605749 TTGTGCAGCCTAGCGACCC 62.606 63.158 0.00 0.00 37.31 4.46
216 220 4.143333 GCAGCCTAGCGACCCGAA 62.143 66.667 0.00 0.00 0.00 4.30
217 221 2.815308 CAGCCTAGCGACCCGAAT 59.185 61.111 0.00 0.00 0.00 3.34
218 222 1.144057 CAGCCTAGCGACCCGAATT 59.856 57.895 0.00 0.00 0.00 2.17
219 223 0.876342 CAGCCTAGCGACCCGAATTC 60.876 60.000 0.00 0.00 0.00 2.17
220 224 1.143183 GCCTAGCGACCCGAATTCA 59.857 57.895 6.22 0.00 0.00 2.57
221 225 0.461339 GCCTAGCGACCCGAATTCAA 60.461 55.000 6.22 0.00 0.00 2.69
222 226 1.810412 GCCTAGCGACCCGAATTCAAT 60.810 52.381 6.22 0.00 0.00 2.57
223 227 2.561569 CCTAGCGACCCGAATTCAATT 58.438 47.619 6.22 0.00 0.00 2.32
224 228 2.544267 CCTAGCGACCCGAATTCAATTC 59.456 50.000 6.22 0.00 35.94 2.17
225 229 1.379527 AGCGACCCGAATTCAATTCC 58.620 50.000 6.22 0.00 35.89 3.01
226 230 1.065418 AGCGACCCGAATTCAATTCCT 60.065 47.619 6.22 0.00 35.89 3.36
227 231 2.169769 AGCGACCCGAATTCAATTCCTA 59.830 45.455 6.22 0.00 35.89 2.94
228 232 2.544267 GCGACCCGAATTCAATTCCTAG 59.456 50.000 6.22 0.00 35.89 3.02
229 233 3.740141 GCGACCCGAATTCAATTCCTAGA 60.740 47.826 6.22 0.00 35.89 2.43
230 234 4.439057 CGACCCGAATTCAATTCCTAGAA 58.561 43.478 6.22 0.00 35.89 2.10
231 235 5.057149 CGACCCGAATTCAATTCCTAGAAT 58.943 41.667 6.22 0.00 35.89 2.40
232 236 5.527582 CGACCCGAATTCAATTCCTAGAATT 59.472 40.000 6.22 0.00 44.61 2.17
233 237 6.511767 CGACCCGAATTCAATTCCTAGAATTG 60.512 42.308 19.37 19.37 42.67 2.32
234 238 6.423182 ACCCGAATTCAATTCCTAGAATTGA 58.577 36.000 22.54 22.54 42.67 2.57
235 239 6.318900 ACCCGAATTCAATTCCTAGAATTGAC 59.681 38.462 24.95 16.06 43.81 3.18
236 240 6.318648 CCCGAATTCAATTCCTAGAATTGACA 59.681 38.462 24.95 18.17 43.81 3.58
237 241 7.412853 CCGAATTCAATTCCTAGAATTGACAG 58.587 38.462 24.95 17.52 43.81 3.51
238 242 7.412853 CGAATTCAATTCCTAGAATTGACAGG 58.587 38.462 24.95 14.49 43.81 4.00
239 243 7.066284 CGAATTCAATTCCTAGAATTGACAGGT 59.934 37.037 24.95 14.20 43.81 4.00
240 244 7.636150 ATTCAATTCCTAGAATTGACAGGTG 57.364 36.000 24.95 4.88 43.81 4.00
241 245 6.373005 TCAATTCCTAGAATTGACAGGTGA 57.627 37.500 22.54 5.42 40.53 4.02
242 246 6.962182 TCAATTCCTAGAATTGACAGGTGAT 58.038 36.000 22.54 0.00 40.53 3.06
243 247 6.825213 TCAATTCCTAGAATTGACAGGTGATG 59.175 38.462 22.54 1.65 40.53 3.07
244 248 4.142609 TCCTAGAATTGACAGGTGATGC 57.857 45.455 0.00 0.00 0.00 3.91
245 249 3.519107 TCCTAGAATTGACAGGTGATGCA 59.481 43.478 0.00 0.00 0.00 3.96
246 250 4.164796 TCCTAGAATTGACAGGTGATGCAT 59.835 41.667 0.00 0.00 0.00 3.96
247 251 5.366477 TCCTAGAATTGACAGGTGATGCATA 59.634 40.000 0.00 0.00 0.00 3.14
248 252 5.699915 CCTAGAATTGACAGGTGATGCATAG 59.300 44.000 0.00 0.00 0.00 2.23
249 253 4.458397 AGAATTGACAGGTGATGCATAGG 58.542 43.478 0.00 0.00 0.00 2.57
250 254 2.715749 TTGACAGGTGATGCATAGGG 57.284 50.000 0.00 0.00 0.00 3.53
251 255 0.839277 TGACAGGTGATGCATAGGGG 59.161 55.000 0.00 0.00 0.00 4.79
252 256 0.839946 GACAGGTGATGCATAGGGGT 59.160 55.000 0.00 0.00 0.00 4.95
253 257 1.212935 GACAGGTGATGCATAGGGGTT 59.787 52.381 0.00 0.00 0.00 4.11
254 258 1.640670 ACAGGTGATGCATAGGGGTTT 59.359 47.619 0.00 0.00 0.00 3.27
255 259 2.042979 ACAGGTGATGCATAGGGGTTTT 59.957 45.455 0.00 0.00 0.00 2.43
256 260 2.689983 CAGGTGATGCATAGGGGTTTTC 59.310 50.000 0.00 0.00 0.00 2.29
257 261 2.031870 GGTGATGCATAGGGGTTTTCC 58.968 52.381 0.00 0.00 39.75 3.13
270 274 3.861276 GGTTTTCCCCCGTTTATTGAG 57.139 47.619 0.00 0.00 0.00 3.02
271 275 2.494471 GGTTTTCCCCCGTTTATTGAGG 59.506 50.000 0.00 0.00 0.00 3.86
272 276 3.423749 GTTTTCCCCCGTTTATTGAGGA 58.576 45.455 0.00 0.00 0.00 3.71
273 277 4.021229 GTTTTCCCCCGTTTATTGAGGAT 58.979 43.478 0.00 0.00 0.00 3.24
274 278 3.570912 TTCCCCCGTTTATTGAGGATC 57.429 47.619 0.00 0.00 0.00 3.36
286 290 2.189594 TGAGGATCAAGCTTGGTGTG 57.810 50.000 25.73 0.66 45.97 3.82
287 291 1.421268 TGAGGATCAAGCTTGGTGTGT 59.579 47.619 25.73 5.69 45.97 3.72
288 292 1.808945 GAGGATCAAGCTTGGTGTGTG 59.191 52.381 25.73 0.00 33.17 3.82
289 293 0.883833 GGATCAAGCTTGGTGTGTGG 59.116 55.000 25.73 0.00 0.00 4.17
290 294 1.609208 GATCAAGCTTGGTGTGTGGT 58.391 50.000 25.73 0.00 0.00 4.16
291 295 2.552155 GGATCAAGCTTGGTGTGTGGTA 60.552 50.000 25.73 3.84 0.00 3.25
292 296 2.254546 TCAAGCTTGGTGTGTGGTAG 57.745 50.000 25.73 0.00 0.00 3.18
293 297 1.765904 TCAAGCTTGGTGTGTGGTAGA 59.234 47.619 25.73 0.00 0.00 2.59
294 298 2.171659 TCAAGCTTGGTGTGTGGTAGAA 59.828 45.455 25.73 0.00 0.00 2.10
295 299 2.256117 AGCTTGGTGTGTGGTAGAAC 57.744 50.000 0.00 0.00 0.00 3.01
296 300 1.202770 AGCTTGGTGTGTGGTAGAACC 60.203 52.381 0.00 0.00 39.22 3.62
313 317 9.778741 TGGTAGAACCATACATCAAGAAATATC 57.221 33.333 0.00 0.00 44.79 1.63
356 360 8.469309 AATTATGAGGACCATGTTTATCTTGG 57.531 34.615 0.00 0.00 44.08 3.61
374 378 9.555727 TTATCTTGGTACTCATACTAAAATGGC 57.444 33.333 0.00 0.00 32.02 4.40
375 379 6.354130 TCTTGGTACTCATACTAAAATGGCC 58.646 40.000 0.00 0.00 32.02 5.36
376 380 4.699637 TGGTACTCATACTAAAATGGCCG 58.300 43.478 0.00 0.00 0.00 6.13
377 381 4.162698 TGGTACTCATACTAAAATGGCCGT 59.837 41.667 0.00 0.00 0.00 5.68
378 382 5.363292 TGGTACTCATACTAAAATGGCCGTA 59.637 40.000 0.00 0.00 0.00 4.02
379 383 6.042322 TGGTACTCATACTAAAATGGCCGTAT 59.958 38.462 0.00 0.00 0.00 3.06
380 384 6.367969 GGTACTCATACTAAAATGGCCGTATG 59.632 42.308 16.02 16.02 40.13 2.39
381 385 5.925509 ACTCATACTAAAATGGCCGTATGT 58.074 37.500 19.43 10.25 39.87 2.29
382 386 7.058023 ACTCATACTAAAATGGCCGTATGTA 57.942 36.000 19.43 11.69 39.87 2.29
383 387 7.676947 ACTCATACTAAAATGGCCGTATGTAT 58.323 34.615 19.43 13.00 39.87 2.29
384 388 7.817962 ACTCATACTAAAATGGCCGTATGTATC 59.182 37.037 19.43 0.00 39.87 2.24
385 389 7.101054 TCATACTAAAATGGCCGTATGTATCC 58.899 38.462 19.43 0.00 39.87 2.59
386 390 4.648651 ACTAAAATGGCCGTATGTATCCC 58.351 43.478 0.00 0.00 0.00 3.85
387 391 3.876309 AAAATGGCCGTATGTATCCCT 57.124 42.857 0.00 0.00 0.00 4.20
388 392 4.986054 AAAATGGCCGTATGTATCCCTA 57.014 40.909 0.00 0.00 0.00 3.53
389 393 4.553330 AAATGGCCGTATGTATCCCTAG 57.447 45.455 0.00 0.00 0.00 3.02
390 394 2.688902 TGGCCGTATGTATCCCTAGT 57.311 50.000 0.00 0.00 0.00 2.57
391 395 2.966915 TGGCCGTATGTATCCCTAGTT 58.033 47.619 0.00 0.00 0.00 2.24
392 396 2.631062 TGGCCGTATGTATCCCTAGTTG 59.369 50.000 0.00 0.00 0.00 3.16
393 397 2.028385 GGCCGTATGTATCCCTAGTTGG 60.028 54.545 0.00 0.00 0.00 3.77
394 398 2.631545 GCCGTATGTATCCCTAGTTGGT 59.368 50.000 0.00 0.00 0.00 3.67
395 399 3.554337 GCCGTATGTATCCCTAGTTGGTG 60.554 52.174 0.00 0.00 0.00 4.17
396 400 3.554337 CCGTATGTATCCCTAGTTGGTGC 60.554 52.174 0.00 0.00 0.00 5.01
397 401 3.069016 CGTATGTATCCCTAGTTGGTGCA 59.931 47.826 0.00 0.00 0.00 4.57
398 402 3.845781 ATGTATCCCTAGTTGGTGCAG 57.154 47.619 0.00 0.00 0.00 4.41
399 403 2.827755 TGTATCCCTAGTTGGTGCAGA 58.172 47.619 0.00 0.00 0.00 4.26
400 404 2.766263 TGTATCCCTAGTTGGTGCAGAG 59.234 50.000 0.00 0.00 0.00 3.35
401 405 1.207791 ATCCCTAGTTGGTGCAGAGG 58.792 55.000 0.00 0.00 0.00 3.69
402 406 0.116342 TCCCTAGTTGGTGCAGAGGA 59.884 55.000 0.00 0.00 0.00 3.71
403 407 0.250513 CCCTAGTTGGTGCAGAGGAC 59.749 60.000 0.00 0.00 0.00 3.85
404 408 0.108615 CCTAGTTGGTGCAGAGGACG 60.109 60.000 0.00 0.00 0.00 4.79
405 409 0.108615 CTAGTTGGTGCAGAGGACGG 60.109 60.000 0.00 0.00 0.00 4.79
406 410 0.541063 TAGTTGGTGCAGAGGACGGA 60.541 55.000 0.00 0.00 0.00 4.69
407 411 1.070786 GTTGGTGCAGAGGACGGAA 59.929 57.895 0.00 0.00 0.00 4.30
408 412 0.534203 GTTGGTGCAGAGGACGGAAA 60.534 55.000 0.00 0.00 0.00 3.13
409 413 0.250295 TTGGTGCAGAGGACGGAAAG 60.250 55.000 0.00 0.00 0.00 2.62
410 414 1.371558 GGTGCAGAGGACGGAAAGT 59.628 57.895 0.00 0.00 0.00 2.66
411 415 0.951040 GGTGCAGAGGACGGAAAGTG 60.951 60.000 0.00 0.00 0.00 3.16
412 416 0.033504 GTGCAGAGGACGGAAAGTGA 59.966 55.000 0.00 0.00 0.00 3.41
413 417 0.756294 TGCAGAGGACGGAAAGTGAA 59.244 50.000 0.00 0.00 0.00 3.18
414 418 1.140052 TGCAGAGGACGGAAAGTGAAA 59.860 47.619 0.00 0.00 0.00 2.69
415 419 2.224523 TGCAGAGGACGGAAAGTGAAAT 60.225 45.455 0.00 0.00 0.00 2.17
416 420 2.814336 GCAGAGGACGGAAAGTGAAATT 59.186 45.455 0.00 0.00 0.00 1.82
417 421 3.120165 GCAGAGGACGGAAAGTGAAATTC 60.120 47.826 0.00 0.00 0.00 2.17
418 422 4.319177 CAGAGGACGGAAAGTGAAATTCT 58.681 43.478 0.00 0.00 0.00 2.40
419 423 4.390297 CAGAGGACGGAAAGTGAAATTCTC 59.610 45.833 0.00 0.00 0.00 2.87
420 424 4.284746 AGAGGACGGAAAGTGAAATTCTCT 59.715 41.667 0.00 0.00 0.00 3.10
421 425 4.570930 AGGACGGAAAGTGAAATTCTCTC 58.429 43.478 0.00 0.00 0.00 3.20
422 426 3.685272 GGACGGAAAGTGAAATTCTCTCC 59.315 47.826 0.00 0.00 0.00 3.71
423 427 3.676093 ACGGAAAGTGAAATTCTCTCCC 58.324 45.455 0.00 3.01 0.00 4.30
424 428 3.072476 ACGGAAAGTGAAATTCTCTCCCA 59.928 43.478 13.10 0.00 0.00 4.37
425 429 4.263506 ACGGAAAGTGAAATTCTCTCCCAT 60.264 41.667 13.10 0.69 0.00 4.00
426 430 4.702131 CGGAAAGTGAAATTCTCTCCCATT 59.298 41.667 13.10 0.51 0.00 3.16
427 431 5.183904 CGGAAAGTGAAATTCTCTCCCATTT 59.816 40.000 13.10 0.23 0.00 2.32
428 432 6.294731 CGGAAAGTGAAATTCTCTCCCATTTT 60.295 38.462 13.10 0.00 0.00 1.82
429 433 7.445121 GGAAAGTGAAATTCTCTCCCATTTTT 58.555 34.615 0.00 0.00 0.00 1.94
450 454 4.594367 TTTTTGGCCGCATGCATC 57.406 50.000 19.57 8.10 43.89 3.91
451 455 1.670015 TTTTTGGCCGCATGCATCA 59.330 47.368 19.57 9.45 43.89 3.07
452 456 0.249676 TTTTTGGCCGCATGCATCAT 59.750 45.000 19.57 0.00 43.89 2.45
453 457 0.179105 TTTTGGCCGCATGCATCATC 60.179 50.000 19.57 2.63 43.89 2.92
454 458 1.321074 TTTGGCCGCATGCATCATCA 61.321 50.000 19.57 5.35 43.89 3.07
455 459 1.110518 TTGGCCGCATGCATCATCAT 61.111 50.000 19.57 0.00 43.89 2.45
456 460 1.080772 GGCCGCATGCATCATCATG 60.081 57.895 19.57 0.00 44.93 3.07
457 461 1.520600 GGCCGCATGCATCATCATGA 61.521 55.000 19.57 0.00 44.94 3.07
458 462 0.526211 GCCGCATGCATCATCATGAT 59.474 50.000 19.57 1.18 44.94 2.45
467 471 1.813178 CATCATCATGATGCAGAGCCC 59.187 52.381 27.68 0.00 46.37 5.19
468 472 0.250166 TCATCATGATGCAGAGCCCG 60.250 55.000 27.68 4.34 38.65 6.13
469 473 1.072678 ATCATGATGCAGAGCCCGG 59.927 57.895 7.59 0.00 0.00 5.73
470 474 1.413256 ATCATGATGCAGAGCCCGGA 61.413 55.000 7.59 0.00 0.00 5.14
471 475 1.597302 CATGATGCAGAGCCCGGAG 60.597 63.158 0.73 0.00 0.00 4.63
491 495 4.563140 AGGTACGCCTCCATTTCTAAAA 57.437 40.909 0.00 0.00 42.67 1.52
492 496 4.913784 AGGTACGCCTCCATTTCTAAAAA 58.086 39.130 0.00 0.00 42.67 1.94
524 528 2.582959 CTATCGAAGCAGTGACGCC 58.417 57.895 0.00 0.00 0.00 5.68
634 641 2.803956 TGTTAAACGAGGCTGCTTGTAC 59.196 45.455 0.00 0.00 0.00 2.90
645 652 3.559242 GGCTGCTTGTACATGATTCTCTC 59.441 47.826 12.65 0.00 0.00 3.20
688 695 2.812358 TACTACTATGCATGCGTGGG 57.188 50.000 24.93 17.76 0.00 4.61
830 863 4.616181 ACTTACAATAATTCAGCGGCAC 57.384 40.909 1.45 0.00 0.00 5.01
849 885 0.110644 CAAGAAGAGAAACGTGCGGC 60.111 55.000 0.00 0.00 0.00 6.53
883 929 2.291465 GTGCAATGTCAGAAGAGTGCAA 59.709 45.455 7.26 0.00 38.32 4.08
896 942 2.335729 TGCAAATGCAGTGCACCG 59.664 55.556 22.44 12.81 46.76 4.94
897 943 2.336088 GCAAATGCAGTGCACCGT 59.664 55.556 22.44 5.90 43.04 4.83
898 944 2.017783 GCAAATGCAGTGCACCGTG 61.018 57.895 22.44 18.71 43.04 4.94
899 945 2.017783 CAAATGCAGTGCACCGTGC 61.018 57.895 22.44 20.84 43.04 5.34
900 946 3.211564 AAATGCAGTGCACCGTGCC 62.212 57.895 22.44 11.83 44.23 5.01
901 947 4.953010 ATGCAGTGCACCGTGCCA 62.953 61.111 22.44 11.43 44.23 4.92
903 949 3.673484 GCAGTGCACCGTGCCAAT 61.673 61.111 20.67 5.65 44.23 3.16
904 950 2.331893 GCAGTGCACCGTGCCAATA 61.332 57.895 20.67 0.00 44.23 1.90
905 951 1.796151 CAGTGCACCGTGCCAATAG 59.204 57.895 20.67 2.93 44.23 1.73
906 952 0.673333 CAGTGCACCGTGCCAATAGA 60.673 55.000 20.67 0.00 44.23 1.98
907 953 0.036164 AGTGCACCGTGCCAATAGAA 59.964 50.000 20.67 0.00 44.23 2.10
908 954 0.168128 GTGCACCGTGCCAATAGAAC 59.832 55.000 20.67 6.59 44.23 3.01
965 1012 2.863137 GCGACTTCTGTTGATCTCATCC 59.137 50.000 0.00 0.00 0.00 3.51
989 1042 1.719117 GAGACTCACTCGAGAGCGG 59.281 63.158 21.68 10.00 42.34 5.52
1076 1129 2.123683 CGCTGGCTAGGGAGAGGA 60.124 66.667 8.58 0.00 39.07 3.71
1370 1423 3.787001 CCTTCCTCTGGGCCGTCC 61.787 72.222 0.00 0.00 0.00 4.79
1393 1446 3.134792 ATGCTCGTCGGCGTCTCT 61.135 61.111 10.18 0.00 39.49 3.10
1442 1495 2.175878 CCTCATGGCATGCCTACTAC 57.824 55.000 35.53 10.37 36.94 2.73
1443 1496 1.696336 CCTCATGGCATGCCTACTACT 59.304 52.381 35.53 11.81 36.94 2.57
1444 1497 2.105477 CCTCATGGCATGCCTACTACTT 59.895 50.000 35.53 10.26 36.94 2.24
1445 1498 3.136763 CTCATGGCATGCCTACTACTTG 58.863 50.000 35.53 20.07 36.94 3.16
1446 1499 2.771372 TCATGGCATGCCTACTACTTGA 59.229 45.455 35.53 21.70 36.94 3.02
1447 1500 3.199727 TCATGGCATGCCTACTACTTGAA 59.800 43.478 35.53 13.35 36.94 2.69
1448 1501 3.931907 TGGCATGCCTACTACTTGAAT 57.068 42.857 35.53 0.00 36.94 2.57
1449 1502 5.071653 TCATGGCATGCCTACTACTTGAATA 59.928 40.000 35.53 12.58 36.94 1.75
1450 1503 4.703897 TGGCATGCCTACTACTTGAATAC 58.296 43.478 35.53 5.40 36.94 1.89
1454 1507 6.369065 GGCATGCCTACTACTTGAATACATAC 59.631 42.308 29.98 0.00 0.00 2.39
1459 1512 7.979537 TGCCTACTACTTGAATACATACTTGTG 59.020 37.037 0.00 0.00 36.53 3.33
1467 1520 2.373540 TACATACTTGTGACGGTGCC 57.626 50.000 0.00 0.00 36.53 5.01
1469 1522 1.078709 CATACTTGTGACGGTGCCAG 58.921 55.000 0.00 0.00 0.00 4.85
1473 1526 1.005037 TTGTGACGGTGCCAGCTAG 60.005 57.895 0.00 0.00 0.00 3.42
1493 1546 7.144569 GCTAGAGCTAAAAATGGGACACACG 62.145 48.000 0.00 0.00 38.92 4.49
1502 1555 2.519377 TGGGACACACGACTACTTTG 57.481 50.000 0.00 0.00 0.00 2.77
1704 1758 3.379445 GACCTTCCTCGGCGTCCA 61.379 66.667 6.85 0.00 0.00 4.02
1729 1783 3.113745 CGCCTGGCATTCCACATC 58.886 61.111 20.29 0.00 37.47 3.06
1744 1798 1.140589 CATCCTCGCGCTTCTCAGT 59.859 57.895 5.56 0.00 0.00 3.41
1745 1799 0.459237 CATCCTCGCGCTTCTCAGTT 60.459 55.000 5.56 0.00 0.00 3.16
1816 1870 2.507324 GCGTCGGAGAAGAGCACC 60.507 66.667 0.00 0.00 38.59 5.01
1834 1888 4.424711 GCATCGGTGGCCAGGGAA 62.425 66.667 5.11 0.00 0.00 3.97
1864 1918 4.980805 GCCAAGGACGTGGTGCGA 62.981 66.667 0.00 0.00 44.77 5.10
2242 2301 1.785041 CGGCCACCAACAAGTGAGTG 61.785 60.000 2.24 0.00 40.34 3.51
2262 2321 2.908940 GCTGGTGGCAGCACTGTT 60.909 61.111 16.56 0.00 46.73 3.16
2263 2322 3.036577 CTGGTGGCAGCACTGTTG 58.963 61.111 16.56 1.47 0.00 3.33
2273 2332 2.288030 GCAGCACTGTTGATTCTTTGCT 60.288 45.455 0.00 0.00 40.93 3.91
2274 2333 3.562505 CAGCACTGTTGATTCTTTGCTC 58.437 45.455 0.00 0.00 38.24 4.26
2276 2335 2.578495 CACTGTTGATTCTTTGCTCGC 58.422 47.619 0.00 0.00 0.00 5.03
2277 2336 2.031769 CACTGTTGATTCTTTGCTCGCA 60.032 45.455 0.00 0.00 0.00 5.10
2278 2337 2.816087 ACTGTTGATTCTTTGCTCGCAT 59.184 40.909 0.00 0.00 0.00 4.73
2279 2338 3.168963 CTGTTGATTCTTTGCTCGCATG 58.831 45.455 0.00 0.00 0.00 4.06
2280 2339 1.916000 GTTGATTCTTTGCTCGCATGC 59.084 47.619 7.91 7.91 0.00 4.06
2281 2340 1.166989 TGATTCTTTGCTCGCATGCA 58.833 45.000 19.57 4.02 41.65 3.96
2282 2341 1.135603 TGATTCTTTGCTCGCATGCAC 60.136 47.619 19.57 6.97 43.20 4.57
2283 2342 1.131883 GATTCTTTGCTCGCATGCACT 59.868 47.619 19.57 0.00 43.20 4.40
2284 2343 0.239082 TTCTTTGCTCGCATGCACTG 59.761 50.000 19.57 7.84 43.20 3.66
2306 2368 0.444260 GCTCCGCTGTTTGCTAACTC 59.556 55.000 12.20 3.70 40.11 3.01
2324 2386 3.984732 GGGTCCCTTTGCAGCCCT 61.985 66.667 0.00 0.00 36.49 5.19
2330 2392 1.490490 TCCCTTTGCAGCCCTATACTG 59.510 52.381 0.00 0.00 38.22 2.74
2399 2461 3.256136 ACAGGTTCTTCGAGACGATCTTT 59.744 43.478 0.00 0.00 35.23 2.52
2466 2528 2.185867 GATACAAGCCGGCGTCCA 59.814 61.111 23.20 7.94 0.00 4.02
2479 2541 4.157120 GTCCAGCGCCACCGGTAT 62.157 66.667 6.87 0.00 44.35 2.73
2531 2593 1.153549 GGCTGTCTTCGCGGAGATT 60.154 57.895 22.25 0.00 0.00 2.40
2598 2660 2.341101 ACGTACCCAGCGGACAGAG 61.341 63.158 0.00 0.00 0.00 3.35
2649 2711 3.557898 GCCAGAAGATCAGGACTGTGAAA 60.558 47.826 0.00 0.00 0.00 2.69
2656 2718 5.809001 AGATCAGGACTGTGAAAATGCTAA 58.191 37.500 0.00 0.00 0.00 3.09
2678 2740 4.868172 TTCTAGTACTGCTACTGGGGTA 57.132 45.455 5.39 0.00 34.79 3.69
2690 2752 4.202472 GCTACTGGGGTAGATGGCTTAAAT 60.202 45.833 7.28 0.00 46.01 1.40
2727 2789 5.333645 GCCAGAAATGACTAGCAACATATCG 60.334 44.000 0.00 0.00 0.00 2.92
2729 2791 6.145209 CCAGAAATGACTAGCAACATATCGAG 59.855 42.308 0.00 0.00 0.00 4.04
2735 2797 4.207955 ACTAGCAACATATCGAGGACAGA 58.792 43.478 0.00 0.00 0.00 3.41
2756 2844 5.047802 CAGACTTGGCTACATGGACAAAAAT 60.048 40.000 0.00 0.00 33.44 1.82
2757 2845 5.047802 AGACTTGGCTACATGGACAAAAATG 60.048 40.000 0.00 0.00 33.44 2.32
2765 2853 7.862372 GGCTACATGGACAAAAATGTGTATATG 59.138 37.037 0.00 0.00 37.57 1.78
2832 2960 5.050499 GCCATATGTTCAAGACAAGATCTCG 60.050 44.000 0.00 0.00 42.62 4.04
2983 3112 8.934023 AAAAATCTGTTAGATGGGACTAAACA 57.066 30.769 0.00 0.00 34.65 2.83
3176 3306 7.148590 GCAACCATTCATCAAACCACTAAATTC 60.149 37.037 0.00 0.00 0.00 2.17
3313 3456 3.138468 AGGAGCATAATTAACAGGGGTCC 59.862 47.826 0.00 0.00 41.83 4.46
3314 3457 3.487372 GAGCATAATTAACAGGGGTCCC 58.513 50.000 0.00 0.00 0.00 4.46
3737 3912 1.758862 CCTTGATCTGGCAATTTCCCC 59.241 52.381 0.00 0.00 0.00 4.81
3809 3984 6.357367 ACTTGGCCCAACAGTATTTCTATAG 58.643 40.000 0.00 0.00 0.00 1.31
3914 4089 1.021390 AAGACAGCAAGCCGGAATCG 61.021 55.000 5.05 0.00 0.00 3.34
3936 4111 4.201851 CGATATGGTTGGCATAAGCATAGC 60.202 45.833 20.85 20.85 41.88 2.97
3977 4152 3.246619 GCTCTCAGTCTTTAGAACACCG 58.753 50.000 0.00 0.00 0.00 4.94
4001 4176 1.285078 GGTTTAGAGCCCACTCCCATT 59.715 52.381 0.00 0.00 44.65 3.16
4003 4178 0.918983 TTAGAGCCCACTCCCATTGG 59.081 55.000 0.00 0.00 44.65 3.16
4004 4179 0.044092 TAGAGCCCACTCCCATTGGA 59.956 55.000 3.62 0.00 44.65 3.53
4063 4238 7.394016 TGAAAGCTACTTATTCCTTGTGATGA 58.606 34.615 0.00 0.00 0.00 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
38 39 7.475771 TTCACCACATTTTGCAAAAATAGTC 57.524 32.000 27.10 0.00 0.00 2.59
64 65 7.201530 GGAAGATATTTTAGAACTGTGGTCACG 60.202 40.741 0.00 0.00 0.00 4.35
84 85 3.914426 AGCGGTGATAACTTGGAAGAT 57.086 42.857 0.00 0.00 0.00 2.40
143 147 8.106247 TCTCTTTGCACCGTATAGAAAATTTT 57.894 30.769 2.28 2.28 0.00 1.82
158 162 1.583477 GCCAAGGCTCTCTTTGCAC 59.417 57.895 3.29 0.00 41.96 4.57
169 173 2.270986 CCAACCACTGAGCCAAGGC 61.271 63.158 2.02 2.02 42.33 4.35
170 174 1.604593 CCCAACCACTGAGCCAAGG 60.605 63.158 0.00 0.00 0.00 3.61
171 175 2.270986 GCCCAACCACTGAGCCAAG 61.271 63.158 0.00 0.00 0.00 3.61
172 176 2.203480 GCCCAACCACTGAGCCAA 60.203 61.111 0.00 0.00 0.00 4.52
173 177 2.844195 ATGCCCAACCACTGAGCCA 61.844 57.895 0.00 0.00 0.00 4.75
174 178 2.036256 ATGCCCAACCACTGAGCC 59.964 61.111 0.00 0.00 0.00 4.70
175 179 2.998279 GCATGCCCAACCACTGAGC 61.998 63.158 6.36 0.00 0.00 4.26
176 180 2.693762 CGCATGCCCAACCACTGAG 61.694 63.158 13.15 0.00 0.00 3.35
177 181 2.672651 CGCATGCCCAACCACTGA 60.673 61.111 13.15 0.00 0.00 3.41
178 182 2.563798 AACGCATGCCCAACCACTG 61.564 57.895 13.15 0.00 0.00 3.66
179 183 2.203480 AACGCATGCCCAACCACT 60.203 55.556 13.15 0.00 0.00 4.00
180 184 2.049248 CAACGCATGCCCAACCAC 60.049 61.111 13.15 0.00 0.00 4.16
181 185 2.520500 ACAACGCATGCCCAACCA 60.521 55.556 13.15 0.00 0.00 3.67
182 186 2.049248 CACAACGCATGCCCAACC 60.049 61.111 13.15 0.00 0.00 3.77
183 187 2.734346 GCACAACGCATGCCCAAC 60.734 61.111 13.15 0.00 41.79 3.77
192 196 4.152625 CGCTAGGCTGCACAACGC 62.153 66.667 0.50 0.00 42.89 4.84
193 197 2.432456 TCGCTAGGCTGCACAACG 60.432 61.111 0.50 0.00 0.00 4.10
194 198 2.391389 GGTCGCTAGGCTGCACAAC 61.391 63.158 0.50 0.00 0.00 3.32
195 199 2.047274 GGTCGCTAGGCTGCACAA 60.047 61.111 0.50 0.00 0.00 3.33
196 200 4.082523 GGGTCGCTAGGCTGCACA 62.083 66.667 0.50 0.00 0.00 4.57
199 203 2.925162 AATTCGGGTCGCTAGGCTGC 62.925 60.000 0.00 0.00 0.00 5.25
200 204 0.876342 GAATTCGGGTCGCTAGGCTG 60.876 60.000 0.00 0.00 0.00 4.85
201 205 1.327690 TGAATTCGGGTCGCTAGGCT 61.328 55.000 0.04 0.00 0.00 4.58
202 206 0.461339 TTGAATTCGGGTCGCTAGGC 60.461 55.000 0.04 0.00 0.00 3.93
203 207 2.240493 ATTGAATTCGGGTCGCTAGG 57.760 50.000 0.04 0.00 0.00 3.02
204 208 2.544267 GGAATTGAATTCGGGTCGCTAG 59.456 50.000 11.39 0.00 40.17 3.42
205 209 2.169769 AGGAATTGAATTCGGGTCGCTA 59.830 45.455 11.39 0.00 40.17 4.26
206 210 1.065418 AGGAATTGAATTCGGGTCGCT 60.065 47.619 11.39 0.00 40.17 4.93
207 211 1.379527 AGGAATTGAATTCGGGTCGC 58.620 50.000 11.39 0.00 40.17 5.19
208 212 4.054780 TCTAGGAATTGAATTCGGGTCG 57.945 45.455 11.39 0.00 40.17 4.79
209 213 6.542370 TCAATTCTAGGAATTGAATTCGGGTC 59.458 38.462 24.34 0.00 41.92 4.46
210 214 6.318900 GTCAATTCTAGGAATTGAATTCGGGT 59.681 38.462 26.66 2.27 45.06 5.28
211 215 6.318648 TGTCAATTCTAGGAATTGAATTCGGG 59.681 38.462 26.66 4.84 45.06 5.14
212 216 7.320443 TGTCAATTCTAGGAATTGAATTCGG 57.680 36.000 26.66 5.15 45.06 4.30
213 217 7.066284 ACCTGTCAATTCTAGGAATTGAATTCG 59.934 37.037 26.66 19.13 45.06 3.34
214 218 8.186821 CACCTGTCAATTCTAGGAATTGAATTC 58.813 37.037 26.66 18.75 45.06 2.17
215 219 7.890127 TCACCTGTCAATTCTAGGAATTGAATT 59.110 33.333 26.66 14.43 45.06 2.17
216 220 7.405292 TCACCTGTCAATTCTAGGAATTGAAT 58.595 34.615 26.66 15.45 45.06 2.57
217 221 6.778821 TCACCTGTCAATTCTAGGAATTGAA 58.221 36.000 26.66 18.77 45.06 2.69
218 222 6.373005 TCACCTGTCAATTCTAGGAATTGA 57.627 37.500 23.36 23.36 42.44 2.57
219 223 6.459298 GCATCACCTGTCAATTCTAGGAATTG 60.459 42.308 20.45 20.45 38.60 2.32
220 224 5.591877 GCATCACCTGTCAATTCTAGGAATT 59.408 40.000 6.24 0.31 35.55 2.17
221 225 5.128919 GCATCACCTGTCAATTCTAGGAAT 58.871 41.667 6.24 0.00 35.55 3.01
222 226 4.019411 TGCATCACCTGTCAATTCTAGGAA 60.019 41.667 6.24 0.00 35.55 3.36
223 227 3.519107 TGCATCACCTGTCAATTCTAGGA 59.481 43.478 6.24 0.00 35.55 2.94
224 228 3.877559 TGCATCACCTGTCAATTCTAGG 58.122 45.455 0.00 0.00 37.61 3.02
225 229 5.699915 CCTATGCATCACCTGTCAATTCTAG 59.300 44.000 0.19 0.00 0.00 2.43
226 230 5.455183 CCCTATGCATCACCTGTCAATTCTA 60.455 44.000 0.19 0.00 0.00 2.10
227 231 4.458397 CCTATGCATCACCTGTCAATTCT 58.542 43.478 0.19 0.00 0.00 2.40
228 232 3.567164 CCCTATGCATCACCTGTCAATTC 59.433 47.826 0.19 0.00 0.00 2.17
229 233 3.559069 CCCTATGCATCACCTGTCAATT 58.441 45.455 0.19 0.00 0.00 2.32
230 234 2.158564 CCCCTATGCATCACCTGTCAAT 60.159 50.000 0.19 0.00 0.00 2.57
231 235 1.212688 CCCCTATGCATCACCTGTCAA 59.787 52.381 0.19 0.00 0.00 3.18
232 236 0.839277 CCCCTATGCATCACCTGTCA 59.161 55.000 0.19 0.00 0.00 3.58
233 237 0.839946 ACCCCTATGCATCACCTGTC 59.160 55.000 0.19 0.00 0.00 3.51
234 238 1.298953 AACCCCTATGCATCACCTGT 58.701 50.000 0.19 0.00 0.00 4.00
235 239 2.442236 AAACCCCTATGCATCACCTG 57.558 50.000 0.19 0.00 0.00 4.00
236 240 2.358195 GGAAAACCCCTATGCATCACCT 60.358 50.000 0.19 0.00 0.00 4.00
237 241 2.031870 GGAAAACCCCTATGCATCACC 58.968 52.381 0.19 0.00 0.00 4.02
250 254 2.494471 CCTCAATAAACGGGGGAAAACC 59.506 50.000 0.00 0.00 39.11 3.27
251 255 3.423749 TCCTCAATAAACGGGGGAAAAC 58.576 45.455 0.00 0.00 0.00 2.43
252 256 3.810721 TCCTCAATAAACGGGGGAAAA 57.189 42.857 0.00 0.00 0.00 2.29
253 257 3.267291 TGATCCTCAATAAACGGGGGAAA 59.733 43.478 0.00 0.00 0.00 3.13
254 258 2.847449 TGATCCTCAATAAACGGGGGAA 59.153 45.455 0.00 0.00 0.00 3.97
255 259 2.483547 TGATCCTCAATAAACGGGGGA 58.516 47.619 0.00 0.00 0.00 4.81
256 260 3.214328 CTTGATCCTCAATAAACGGGGG 58.786 50.000 0.00 0.00 35.59 5.40
257 261 2.618709 GCTTGATCCTCAATAAACGGGG 59.381 50.000 0.00 0.00 35.59 5.73
258 262 3.545703 AGCTTGATCCTCAATAAACGGG 58.454 45.455 0.00 0.00 35.59 5.28
259 263 4.201950 CCAAGCTTGATCCTCAATAAACGG 60.202 45.833 28.05 0.72 35.59 4.44
260 264 4.396166 ACCAAGCTTGATCCTCAATAAACG 59.604 41.667 28.05 7.94 35.59 3.60
261 265 5.183904 ACACCAAGCTTGATCCTCAATAAAC 59.816 40.000 28.05 0.00 35.59 2.01
262 266 5.183713 CACACCAAGCTTGATCCTCAATAAA 59.816 40.000 28.05 0.00 35.59 1.40
263 267 4.701651 CACACCAAGCTTGATCCTCAATAA 59.298 41.667 28.05 0.00 35.59 1.40
264 268 4.263462 ACACACCAAGCTTGATCCTCAATA 60.263 41.667 28.05 0.00 35.59 1.90
265 269 3.087031 CACACCAAGCTTGATCCTCAAT 58.913 45.455 28.05 1.40 35.59 2.57
266 270 2.158623 ACACACCAAGCTTGATCCTCAA 60.159 45.455 28.05 0.00 34.79 3.02
267 271 1.421268 ACACACCAAGCTTGATCCTCA 59.579 47.619 28.05 0.00 0.00 3.86
268 272 1.808945 CACACACCAAGCTTGATCCTC 59.191 52.381 28.05 0.00 0.00 3.71
269 273 1.546323 CCACACACCAAGCTTGATCCT 60.546 52.381 28.05 4.13 0.00 3.24
270 274 0.883833 CCACACACCAAGCTTGATCC 59.116 55.000 28.05 0.00 0.00 3.36
271 275 1.609208 ACCACACACCAAGCTTGATC 58.391 50.000 28.05 0.00 0.00 2.92
272 276 2.371841 TCTACCACACACCAAGCTTGAT 59.628 45.455 28.05 8.09 0.00 2.57
273 277 1.765904 TCTACCACACACCAAGCTTGA 59.234 47.619 28.05 3.22 0.00 3.02
274 278 2.254546 TCTACCACACACCAAGCTTG 57.745 50.000 19.93 19.93 0.00 4.01
275 279 2.572290 GTTCTACCACACACCAAGCTT 58.428 47.619 0.00 0.00 0.00 3.74
276 280 1.202770 GGTTCTACCACACACCAAGCT 60.203 52.381 0.00 0.00 38.42 3.74
277 281 1.235724 GGTTCTACCACACACCAAGC 58.764 55.000 0.00 0.00 38.42 4.01
278 282 2.631160 TGGTTCTACCACACACCAAG 57.369 50.000 0.00 0.00 44.79 3.61
330 334 8.917088 CCAAGATAAACATGGTCCTCATAATTT 58.083 33.333 0.00 0.00 34.12 1.82
331 335 8.061304 ACCAAGATAAACATGGTCCTCATAATT 58.939 33.333 0.00 0.00 45.86 1.40
332 336 7.586349 ACCAAGATAAACATGGTCCTCATAAT 58.414 34.615 0.00 0.00 45.86 1.28
333 337 6.969043 ACCAAGATAAACATGGTCCTCATAA 58.031 36.000 0.00 0.00 45.86 1.90
334 338 6.575244 ACCAAGATAAACATGGTCCTCATA 57.425 37.500 0.00 0.00 45.86 2.15
335 339 5.456921 ACCAAGATAAACATGGTCCTCAT 57.543 39.130 0.00 0.00 45.86 2.90
336 340 4.927267 ACCAAGATAAACATGGTCCTCA 57.073 40.909 0.00 0.00 45.86 3.86
337 341 5.990668 AGTACCAAGATAAACATGGTCCTC 58.009 41.667 0.00 0.00 45.86 3.71
338 342 5.487488 TGAGTACCAAGATAAACATGGTCCT 59.513 40.000 0.00 0.00 45.86 3.85
339 343 5.741011 TGAGTACCAAGATAAACATGGTCC 58.259 41.667 0.00 0.00 45.86 4.46
340 344 8.204836 AGTATGAGTACCAAGATAAACATGGTC 58.795 37.037 0.00 0.00 45.86 4.02
348 352 9.555727 GCCATTTTAGTATGAGTACCAAGATAA 57.444 33.333 0.00 0.00 0.00 1.75
349 353 8.154856 GGCCATTTTAGTATGAGTACCAAGATA 58.845 37.037 0.00 0.00 0.00 1.98
350 354 6.998673 GGCCATTTTAGTATGAGTACCAAGAT 59.001 38.462 0.00 0.00 0.00 2.40
351 355 6.354130 GGCCATTTTAGTATGAGTACCAAGA 58.646 40.000 0.00 0.00 0.00 3.02
352 356 5.236478 CGGCCATTTTAGTATGAGTACCAAG 59.764 44.000 2.24 0.00 0.00 3.61
353 357 5.120399 CGGCCATTTTAGTATGAGTACCAA 58.880 41.667 2.24 0.00 0.00 3.67
354 358 4.162698 ACGGCCATTTTAGTATGAGTACCA 59.837 41.667 2.24 0.00 0.00 3.25
355 359 4.700700 ACGGCCATTTTAGTATGAGTACC 58.299 43.478 2.24 0.00 0.00 3.34
356 360 6.927381 ACATACGGCCATTTTAGTATGAGTAC 59.073 38.462 24.41 0.00 45.38 2.73
357 361 7.058023 ACATACGGCCATTTTAGTATGAGTA 57.942 36.000 24.41 6.91 45.38 2.59
358 362 5.925509 ACATACGGCCATTTTAGTATGAGT 58.074 37.500 24.41 7.87 45.38 3.41
359 363 7.277981 GGATACATACGGCCATTTTAGTATGAG 59.722 40.741 24.41 7.33 45.38 2.90
360 364 7.101054 GGATACATACGGCCATTTTAGTATGA 58.899 38.462 24.41 13.28 45.38 2.15
361 365 6.315393 GGGATACATACGGCCATTTTAGTATG 59.685 42.308 18.96 18.96 46.90 2.39
362 366 6.214819 AGGGATACATACGGCCATTTTAGTAT 59.785 38.462 2.24 2.85 39.74 2.12
363 367 5.544948 AGGGATACATACGGCCATTTTAGTA 59.455 40.000 2.24 0.00 39.74 1.82
364 368 4.349930 AGGGATACATACGGCCATTTTAGT 59.650 41.667 2.24 0.00 39.74 2.24
365 369 4.906618 AGGGATACATACGGCCATTTTAG 58.093 43.478 2.24 0.00 39.74 1.85
366 370 4.986054 AGGGATACATACGGCCATTTTA 57.014 40.909 2.24 0.00 39.74 1.52
367 371 3.876309 AGGGATACATACGGCCATTTT 57.124 42.857 2.24 0.00 39.74 1.82
368 372 3.908103 ACTAGGGATACATACGGCCATTT 59.092 43.478 2.24 0.00 39.74 2.32
369 373 3.517612 ACTAGGGATACATACGGCCATT 58.482 45.455 2.24 0.00 39.74 3.16
370 374 3.185880 ACTAGGGATACATACGGCCAT 57.814 47.619 2.24 0.00 39.74 4.40
371 375 2.631062 CAACTAGGGATACATACGGCCA 59.369 50.000 2.24 0.00 39.74 5.36
372 376 2.028385 CCAACTAGGGATACATACGGCC 60.028 54.545 0.00 0.00 39.74 6.13
373 377 2.631545 ACCAACTAGGGATACATACGGC 59.368 50.000 0.00 0.00 43.89 5.68
374 378 3.554337 GCACCAACTAGGGATACATACGG 60.554 52.174 0.00 0.00 43.89 4.02
375 379 3.069016 TGCACCAACTAGGGATACATACG 59.931 47.826 0.00 0.00 43.89 3.06
376 380 4.344102 TCTGCACCAACTAGGGATACATAC 59.656 45.833 0.00 0.00 43.89 2.39
377 381 4.552674 TCTGCACCAACTAGGGATACATA 58.447 43.478 0.00 0.00 43.89 2.29
378 382 3.384168 TCTGCACCAACTAGGGATACAT 58.616 45.455 0.00 0.00 43.89 2.29
379 383 2.766263 CTCTGCACCAACTAGGGATACA 59.234 50.000 0.00 0.00 43.89 2.29
380 384 2.103263 CCTCTGCACCAACTAGGGATAC 59.897 54.545 0.00 0.00 43.89 2.24
381 385 2.023404 TCCTCTGCACCAACTAGGGATA 60.023 50.000 0.00 0.00 43.89 2.59
382 386 1.207791 CCTCTGCACCAACTAGGGAT 58.792 55.000 0.00 0.00 43.89 3.85
383 387 0.116342 TCCTCTGCACCAACTAGGGA 59.884 55.000 0.00 0.00 43.89 4.20
384 388 0.250513 GTCCTCTGCACCAACTAGGG 59.749 60.000 0.00 0.00 43.89 3.53
385 389 0.108615 CGTCCTCTGCACCAACTAGG 60.109 60.000 0.00 0.00 45.67 3.02
386 390 0.108615 CCGTCCTCTGCACCAACTAG 60.109 60.000 0.00 0.00 0.00 2.57
387 391 0.541063 TCCGTCCTCTGCACCAACTA 60.541 55.000 0.00 0.00 0.00 2.24
388 392 1.407656 TTCCGTCCTCTGCACCAACT 61.408 55.000 0.00 0.00 0.00 3.16
389 393 0.534203 TTTCCGTCCTCTGCACCAAC 60.534 55.000 0.00 0.00 0.00 3.77
390 394 0.250295 CTTTCCGTCCTCTGCACCAA 60.250 55.000 0.00 0.00 0.00 3.67
391 395 1.371183 CTTTCCGTCCTCTGCACCA 59.629 57.895 0.00 0.00 0.00 4.17
392 396 0.951040 CACTTTCCGTCCTCTGCACC 60.951 60.000 0.00 0.00 0.00 5.01
393 397 0.033504 TCACTTTCCGTCCTCTGCAC 59.966 55.000 0.00 0.00 0.00 4.57
394 398 0.756294 TTCACTTTCCGTCCTCTGCA 59.244 50.000 0.00 0.00 0.00 4.41
395 399 1.878953 TTTCACTTTCCGTCCTCTGC 58.121 50.000 0.00 0.00 0.00 4.26
396 400 4.319177 AGAATTTCACTTTCCGTCCTCTG 58.681 43.478 0.00 0.00 0.00 3.35
397 401 4.284746 AGAGAATTTCACTTTCCGTCCTCT 59.715 41.667 0.00 0.00 0.00 3.69
398 402 4.570930 AGAGAATTTCACTTTCCGTCCTC 58.429 43.478 0.00 0.00 0.00 3.71
399 403 4.563786 GGAGAGAATTTCACTTTCCGTCCT 60.564 45.833 0.00 0.00 30.99 3.85
400 404 3.685272 GGAGAGAATTTCACTTTCCGTCC 59.315 47.826 0.00 0.00 30.99 4.79
401 405 3.685272 GGGAGAGAATTTCACTTTCCGTC 59.315 47.826 0.00 0.00 38.86 4.79
402 406 3.072476 TGGGAGAGAATTTCACTTTCCGT 59.928 43.478 0.00 0.00 38.86 4.69
403 407 3.674997 TGGGAGAGAATTTCACTTTCCG 58.325 45.455 0.00 0.00 38.86 4.30
404 408 6.596309 AAATGGGAGAGAATTTCACTTTCC 57.404 37.500 0.00 0.00 37.75 3.13
433 437 0.249676 ATGATGCATGCGGCCAAAAA 59.750 45.000 14.09 0.00 43.89 1.94
434 438 0.179105 GATGATGCATGCGGCCAAAA 60.179 50.000 14.09 0.00 43.89 2.44
435 439 1.321074 TGATGATGCATGCGGCCAAA 61.321 50.000 14.09 0.00 43.89 3.28
436 440 1.110518 ATGATGATGCATGCGGCCAA 61.111 50.000 14.09 0.00 43.89 4.52
437 441 1.529713 ATGATGATGCATGCGGCCA 60.530 52.632 14.09 10.90 43.89 5.36
438 442 1.080772 CATGATGATGCATGCGGCC 60.081 57.895 14.09 5.01 43.89 6.13
439 443 0.526211 ATCATGATGATGCATGCGGC 59.474 50.000 14.09 7.96 44.08 6.53
440 444 2.262572 CATCATGATGATGCATGCGG 57.737 50.000 28.37 0.00 46.37 5.69
448 452 1.610886 CGGGCTCTGCATCATGATGAT 60.611 52.381 34.65 1.25 41.20 2.45
449 453 0.250166 CGGGCTCTGCATCATGATGA 60.250 55.000 34.65 19.93 41.20 2.92
450 454 1.235281 CCGGGCTCTGCATCATGATG 61.235 60.000 28.04 28.04 41.60 3.07
451 455 1.072678 CCGGGCTCTGCATCATGAT 59.927 57.895 1.18 1.18 0.00 2.45
452 456 2.036428 CTCCGGGCTCTGCATCATGA 62.036 60.000 0.00 0.00 0.00 3.07
453 457 1.597302 CTCCGGGCTCTGCATCATG 60.597 63.158 0.00 0.00 0.00 3.07
454 458 2.815945 CCTCCGGGCTCTGCATCAT 61.816 63.158 0.00 0.00 0.00 2.45
455 459 2.871795 TACCTCCGGGCTCTGCATCA 62.872 60.000 0.00 0.00 35.63 3.07
456 460 2.134287 TACCTCCGGGCTCTGCATC 61.134 63.158 0.00 0.00 35.63 3.91
457 461 2.041922 TACCTCCGGGCTCTGCAT 60.042 61.111 0.00 0.00 35.63 3.96
458 462 3.075005 GTACCTCCGGGCTCTGCA 61.075 66.667 0.00 0.00 35.63 4.41
459 463 4.208686 CGTACCTCCGGGCTCTGC 62.209 72.222 0.00 0.00 35.63 4.26
460 464 4.208686 GCGTACCTCCGGGCTCTG 62.209 72.222 0.00 0.00 35.63 3.35
524 528 4.362932 TGAGATCTTCAGAACTGTAGCG 57.637 45.455 0.00 0.00 0.00 4.26
634 641 9.844257 AAGGGTTAAATTAGAGAGAGAATCATG 57.156 33.333 0.00 0.00 37.82 3.07
671 678 2.028658 AGATCCCACGCATGCATAGTAG 60.029 50.000 19.57 2.13 0.00 2.57
672 679 1.970640 AGATCCCACGCATGCATAGTA 59.029 47.619 19.57 0.00 0.00 1.82
673 680 0.761187 AGATCCCACGCATGCATAGT 59.239 50.000 19.57 4.51 0.00 2.12
674 681 1.888215 AAGATCCCACGCATGCATAG 58.112 50.000 19.57 6.26 0.00 2.23
675 682 2.158769 AGAAAGATCCCACGCATGCATA 60.159 45.455 19.57 0.00 0.00 3.14
676 683 1.027357 GAAAGATCCCACGCATGCAT 58.973 50.000 19.57 0.00 0.00 3.96
688 695 3.204526 CACAGCATCCCTCAGAAAGATC 58.795 50.000 0.00 0.00 0.00 2.75
830 863 0.110644 GCCGCACGTTTCTCTTCTTG 60.111 55.000 0.00 0.00 0.00 3.02
891 937 1.094785 ATGTTCTATTGGCACGGTGC 58.905 50.000 24.43 24.43 44.08 5.01
892 938 1.202177 GCATGTTCTATTGGCACGGTG 60.202 52.381 3.15 3.15 0.00 4.94
893 939 1.094785 GCATGTTCTATTGGCACGGT 58.905 50.000 0.00 0.00 0.00 4.83
894 940 0.027979 CGCATGTTCTATTGGCACGG 59.972 55.000 0.00 0.00 0.00 4.94
895 941 0.027979 CCGCATGTTCTATTGGCACG 59.972 55.000 0.00 0.00 0.00 5.34
896 942 1.094785 ACCGCATGTTCTATTGGCAC 58.905 50.000 0.00 0.00 0.00 5.01
897 943 1.093972 CACCGCATGTTCTATTGGCA 58.906 50.000 0.00 0.00 0.00 4.92
898 944 0.248621 GCACCGCATGTTCTATTGGC 60.249 55.000 0.00 0.00 0.00 4.52
899 945 0.027979 CGCACCGCATGTTCTATTGG 59.972 55.000 0.00 0.00 0.00 3.16
900 946 1.006086 TCGCACCGCATGTTCTATTG 58.994 50.000 0.00 0.00 0.00 1.90
901 947 1.006832 GTCGCACCGCATGTTCTATT 58.993 50.000 0.00 0.00 0.00 1.73
902 948 0.810031 GGTCGCACCGCATGTTCTAT 60.810 55.000 0.00 0.00 0.00 1.98
903 949 1.447140 GGTCGCACCGCATGTTCTA 60.447 57.895 0.00 0.00 0.00 2.10
904 950 2.742372 GGTCGCACCGCATGTTCT 60.742 61.111 0.00 0.00 0.00 3.01
989 1042 4.267536 AGAAAAGCCCCGTAAATAAGGAC 58.732 43.478 0.00 0.00 0.00 3.85
1076 1129 4.060667 CACCATTTCCCCGCCCCT 62.061 66.667 0.00 0.00 0.00 4.79
1086 1139 2.247790 GTGCTCGTGCTCACCATTT 58.752 52.632 11.19 0.00 40.48 2.32
1192 1245 2.358247 CTGTAAACGGCCGGCAGT 60.358 61.111 31.76 29.04 0.00 4.40
1204 1257 3.712907 GCGCCCACCTCCCTGTAA 61.713 66.667 0.00 0.00 0.00 2.41
1393 1446 0.257328 TGACCTGGACAAAAGTGCCA 59.743 50.000 0.00 0.00 32.31 4.92
1441 1494 5.637810 CACCGTCACAAGTATGTATTCAAGT 59.362 40.000 0.00 0.00 37.82 3.16
1442 1495 5.445939 GCACCGTCACAAGTATGTATTCAAG 60.446 44.000 0.00 0.00 37.82 3.02
1443 1496 4.390603 GCACCGTCACAAGTATGTATTCAA 59.609 41.667 0.00 0.00 37.82 2.69
1444 1497 3.930229 GCACCGTCACAAGTATGTATTCA 59.070 43.478 0.00 0.00 37.82 2.57
1445 1498 3.308866 GGCACCGTCACAAGTATGTATTC 59.691 47.826 0.00 0.00 37.82 1.75
1446 1499 3.267483 GGCACCGTCACAAGTATGTATT 58.733 45.455 0.00 0.00 37.82 1.89
1447 1500 2.235155 TGGCACCGTCACAAGTATGTAT 59.765 45.455 0.00 0.00 37.82 2.29
1448 1501 1.619332 TGGCACCGTCACAAGTATGTA 59.381 47.619 0.00 0.00 37.82 2.29
1449 1502 0.394938 TGGCACCGTCACAAGTATGT 59.605 50.000 0.00 0.00 41.61 2.29
1450 1503 1.078709 CTGGCACCGTCACAAGTATG 58.921 55.000 0.00 0.00 0.00 2.39
1454 1507 1.005037 TAGCTGGCACCGTCACAAG 60.005 57.895 0.00 0.00 0.00 3.16
1459 1512 2.202810 GCTCTAGCTGGCACCGTC 60.203 66.667 0.00 0.00 38.21 4.79
1469 1522 4.095036 GTGTGTCCCATTTTTAGCTCTAGC 59.905 45.833 0.00 0.00 42.49 3.42
1473 1526 3.071479 TCGTGTGTCCCATTTTTAGCTC 58.929 45.455 0.00 0.00 0.00 4.09
1483 1536 1.758280 ACAAAGTAGTCGTGTGTCCCA 59.242 47.619 0.00 0.00 0.00 4.37
1484 1537 2.521105 ACAAAGTAGTCGTGTGTCCC 57.479 50.000 0.00 0.00 0.00 4.46
1485 1538 3.968649 TGTACAAAGTAGTCGTGTGTCC 58.031 45.455 0.00 0.00 0.00 4.02
1486 1539 4.852138 TCTGTACAAAGTAGTCGTGTGTC 58.148 43.478 0.00 0.00 0.00 3.67
1487 1540 4.906065 TCTGTACAAAGTAGTCGTGTGT 57.094 40.909 0.00 0.00 0.00 3.72
1493 1546 4.106029 TCGCCATCTGTACAAAGTAGTC 57.894 45.455 0.00 0.00 0.00 2.59
1494 1547 4.683832 GATCGCCATCTGTACAAAGTAGT 58.316 43.478 0.00 0.00 0.00 2.73
1502 1555 0.999228 CTCGCGATCGCCATCTGTAC 60.999 60.000 32.63 4.00 37.98 2.90
1729 1783 1.678269 CGAAACTGAGAAGCGCGAGG 61.678 60.000 12.10 0.00 0.00 4.63
1799 1853 2.507324 GGTGCTCTTCTCCGACGC 60.507 66.667 0.00 0.00 0.00 5.19
1804 1858 1.880340 CGATGCGGTGCTCTTCTCC 60.880 63.158 0.00 0.00 0.00 3.71
1864 1918 0.462047 GGATCTGGAACGTCGGCAAT 60.462 55.000 0.00 0.00 0.00 3.56
2092 2146 4.664677 GACGCCGTGCTCACCTGT 62.665 66.667 0.00 0.00 0.00 4.00
2143 2197 1.762460 CGAGGGGTCTATGGGCAGT 60.762 63.158 0.00 0.00 0.00 4.40
2255 2314 2.578495 CGAGCAAAGAATCAACAGTGC 58.422 47.619 0.00 0.00 0.00 4.40
2256 2315 2.031769 TGCGAGCAAAGAATCAACAGTG 60.032 45.455 0.00 0.00 0.00 3.66
2260 2319 1.916000 GCATGCGAGCAAAGAATCAAC 59.084 47.619 0.00 0.00 0.00 3.18
2262 2321 1.166989 TGCATGCGAGCAAAGAATCA 58.833 45.000 14.09 0.00 42.46 2.57
2296 2358 1.061546 AAGGGACCCGAGTTAGCAAA 58.938 50.000 4.40 0.00 0.00 3.68
2324 2386 0.596577 GCACGATCTCCGCCAGTATA 59.403 55.000 0.00 0.00 43.32 1.47
2346 2408 2.202492 CGTCGTCCTCGCCTTCTG 60.202 66.667 0.00 0.00 36.96 3.02
2477 2539 0.174845 CGTTCTCCCGTTCAGCCATA 59.825 55.000 0.00 0.00 0.00 2.74
2479 2541 2.342279 CGTTCTCCCGTTCAGCCA 59.658 61.111 0.00 0.00 0.00 4.75
2540 2602 2.846652 GCTGCAGCAGATGGCCATC 61.847 63.158 34.48 34.48 46.50 3.51
2636 2698 6.240894 AGAATTAGCATTTTCACAGTCCTGA 58.759 36.000 0.40 0.00 0.00 3.86
2649 2711 7.437748 CCAGTAGCAGTACTAGAATTAGCATT 58.562 38.462 0.00 0.00 37.40 3.56
2656 2718 4.267341 ACCCCAGTAGCAGTACTAGAAT 57.733 45.455 0.00 0.00 37.40 2.40
2678 2740 3.069158 GCAATGCCTGATTTAAGCCATCT 59.931 43.478 0.00 0.00 0.00 2.90
2710 2772 4.584743 TGTCCTCGATATGTTGCTAGTCAT 59.415 41.667 0.00 0.00 0.00 3.06
2727 2789 2.419297 CCATGTAGCCAAGTCTGTCCTC 60.419 54.545 0.00 0.00 0.00 3.71
2729 2791 1.555075 TCCATGTAGCCAAGTCTGTCC 59.445 52.381 0.00 0.00 0.00 4.02
2735 2797 4.588528 ACATTTTTGTCCATGTAGCCAAGT 59.411 37.500 0.00 0.00 31.60 3.16
2756 2844 5.416326 GTGGGCCTACAAAAACATATACACA 59.584 40.000 15.42 0.00 0.00 3.72
2757 2845 5.650703 AGTGGGCCTACAAAAACATATACAC 59.349 40.000 22.57 5.79 0.00 2.90
2765 2853 1.886542 CCTGAGTGGGCCTACAAAAAC 59.113 52.381 22.57 7.61 0.00 2.43
2776 2864 1.928868 AAATTGCCTTCCTGAGTGGG 58.071 50.000 0.00 0.00 36.20 4.61
2832 2960 8.457238 AGTTTAGAGGATTAAGAATTGCATCC 57.543 34.615 0.00 0.00 38.75 3.51
2963 3092 6.708949 GTGTTTGTTTAGTCCCATCTAACAGA 59.291 38.462 0.00 0.00 30.87 3.41
2983 3112 4.528920 TGGCCTAGTTAACTTGTGTGTTT 58.471 39.130 14.49 0.00 0.00 2.83
3176 3306 2.749621 GTGCAGGGTAATCACTGGAAAG 59.250 50.000 0.00 0.00 46.33 2.62
3292 3435 3.487372 GGACCCCTGTTAATTATGCTCC 58.513 50.000 0.00 0.00 0.00 4.70
3307 3450 1.264295 CGTAGCCTATTAGGGACCCC 58.736 60.000 7.00 1.17 35.37 4.95
3313 3456 3.688235 AGTCTAGCCGTAGCCTATTAGG 58.312 50.000 5.28 5.28 41.25 2.69
3314 3457 4.333372 GCTAGTCTAGCCGTAGCCTATTAG 59.667 50.000 19.57 0.00 45.95 1.73
3498 3670 8.099364 AGTCAACTTTGTTGTATTCATGGTAG 57.901 34.615 9.78 0.00 0.00 3.18
3737 3912 1.201647 CAGAGTTCAAATGCAGCCCTG 59.798 52.381 0.00 0.00 0.00 4.45
3809 3984 6.758416 GGTCTTCTTTTCAAAATATGGATGGC 59.242 38.462 0.00 0.00 0.00 4.40
3824 3999 1.215423 ACAGGTGGCTGGTCTTCTTTT 59.785 47.619 0.00 0.00 0.00 2.27
3914 4089 4.946157 AGCTATGCTTATGCCAACCATATC 59.054 41.667 0.00 0.00 33.89 1.63
3936 4111 4.636249 AGCACTGACTCTCTTAACCAAAG 58.364 43.478 0.00 0.00 36.45 2.77
3994 4169 5.533903 CTGGTTAATCAGAATCCAATGGGAG 59.466 44.000 10.40 0.00 40.90 4.30
4001 4176 7.293299 ACTCCATATCTGGTTAATCAGAATCCA 59.707 37.037 21.87 8.52 45.54 3.41
4031 4206 5.416013 AGGAATAAGTAGCTTTCAAACTGGC 59.584 40.000 0.00 0.00 0.00 4.85
4063 4238 9.234827 TCATGAATAGAAACTCAAATGTGATGT 57.765 29.630 0.00 0.00 31.85 3.06
4079 4254 7.419518 GGAAATCTTCCTGGTCTCATGAATAGA 60.420 40.741 0.00 0.00 46.57 1.98
4081 4256 6.595682 GGAAATCTTCCTGGTCTCATGAATA 58.404 40.000 0.00 0.00 46.57 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.