Multiple sequence alignment - TraesCS4B01G239500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G239500 chr4B 100.000 4500 0 0 1 4500 496546632 496551131 0.000000e+00 8311.0
1 TraesCS4B01G239500 chr4B 90.385 104 4 1 2475 2578 621424696 621424793 1.020000e-26 132.0
2 TraesCS4B01G239500 chr4A 93.456 2506 123 22 2 2477 59281610 59284104 0.000000e+00 3681.0
3 TraesCS4B01G239500 chr4A 79.710 1587 223 60 920 2446 666940701 666939154 0.000000e+00 1055.0
4 TraesCS4B01G239500 chr4A 94.652 374 19 1 2868 3241 59284824 59285196 3.020000e-161 579.0
5 TraesCS4B01G239500 chr4A 88.820 483 35 5 3323 3786 59285195 59285677 3.900000e-160 575.0
6 TraesCS4B01G239500 chr4A 95.833 240 10 0 2576 2815 59284102 59284341 5.460000e-104 388.0
7 TraesCS4B01G239500 chr4A 83.264 239 24 7 2618 2844 666939080 666938846 5.900000e-49 206.0
8 TraesCS4B01G239500 chr4A 87.151 179 20 3 2959 3136 666938789 666938613 2.750000e-47 200.0
9 TraesCS4B01G239500 chr4A 82.911 158 22 3 3370 3527 666938411 666938259 2.180000e-28 137.0
10 TraesCS4B01G239500 chr4A 90.909 99 9 0 4402 4500 682754625 682754723 2.820000e-27 134.0
11 TraesCS4B01G239500 chr4A 95.082 61 2 1 4300 4359 59285931 59285991 1.330000e-15 95.3
12 TraesCS4B01G239500 chr4A 97.674 43 1 0 224 266 53815075 53815117 1.740000e-09 75.0
13 TraesCS4B01G239500 chr4D 93.445 2502 108 16 2 2475 401530479 401532952 0.000000e+00 3661.0
14 TraesCS4B01G239500 chr4D 97.605 668 12 4 2575 3241 401532953 401533617 0.000000e+00 1142.0
15 TraesCS4B01G239500 chr4D 94.624 186 10 0 3361 3546 401533667 401533852 5.700000e-74 289.0
16 TraesCS4B01G239500 chr4D 86.275 153 12 5 3635 3786 401533952 401534096 1.680000e-34 158.0
17 TraesCS4B01G239500 chr2B 87.179 1716 156 29 805 2477 781832861 781831167 0.000000e+00 1892.0
18 TraesCS4B01G239500 chr2B 83.378 373 42 12 3361 3718 781830536 781830169 1.210000e-85 327.0
19 TraesCS4B01G239500 chr2B 87.153 288 17 9 2576 2844 781831169 781830883 4.370000e-80 309.0
20 TraesCS4B01G239500 chr2B 83.333 288 23 8 2954 3241 781830849 781830587 4.500000e-60 243.0
21 TraesCS4B01G239500 chr2B 81.509 265 24 12 3474 3721 781826020 781825764 1.280000e-45 195.0
22 TraesCS4B01G239500 chr2B 87.500 176 12 8 2954 3122 781826379 781826207 1.280000e-45 195.0
23 TraesCS4B01G239500 chr2B 94.253 87 4 1 3147 3232 781826217 781826131 1.020000e-26 132.0
24 TraesCS4B01G239500 chr2B 90.000 100 10 0 4401 4500 421092143 421092242 3.650000e-26 130.0
25 TraesCS4B01G239500 chr2B 90.000 100 9 1 4401 4500 69034068 69034166 1.310000e-25 128.0
26 TraesCS4B01G239500 chr2D 86.726 1695 149 31 799 2446 647967828 647969493 0.000000e+00 1814.0
27 TraesCS4B01G239500 chr2D 90.909 275 18 5 2576 2844 647969514 647969787 3.310000e-96 363.0
28 TraesCS4B01G239500 chr2D 88.312 308 22 5 2954 3261 647969821 647970114 1.540000e-94 357.0
29 TraesCS4B01G239500 chr2D 87.066 317 36 4 426 739 314367407 314367093 1.990000e-93 353.0
30 TraesCS4B01G239500 chr2D 79.526 464 49 22 3303 3725 647970236 647970694 5.700000e-74 289.0
31 TraesCS4B01G239500 chr2D 86.928 153 13 4 120 266 648120092 648120243 1.000000e-36 165.0
32 TraesCS4B01G239500 chr2D 95.181 83 4 0 275 357 609296396 609296478 1.020000e-26 132.0
33 TraesCS4B01G239500 chr2D 88.182 110 7 4 2468 2577 260369988 260370091 4.730000e-25 126.0
34 TraesCS4B01G239500 chr2D 89.000 100 10 1 4401 4500 84340834 84340736 6.110000e-24 122.0
35 TraesCS4B01G239500 chrUn 86.667 1710 138 36 812 2477 31375245 31373582 0.000000e+00 1812.0
36 TraesCS4B01G239500 chrUn 90.580 276 18 6 2576 2844 31373584 31373310 4.280000e-95 359.0
37 TraesCS4B01G239500 chrUn 84.293 382 40 12 3361 3728 31372951 31372576 5.540000e-94 355.0
38 TraesCS4B01G239500 chrUn 87.847 288 22 3 2954 3241 31373276 31373002 4.340000e-85 326.0
39 TraesCS4B01G239500 chrUn 84.899 298 31 12 2 290 31313826 31313534 5.700000e-74 289.0
40 TraesCS4B01G239500 chrUn 78.108 370 39 20 2 366 31327653 31327321 3.550000e-46 196.0
41 TraesCS4B01G239500 chrUn 95.349 43 2 0 224 266 114923751 114923709 8.080000e-08 69.4
42 TraesCS4B01G239500 chr7A 81.220 1262 160 39 1188 2416 54838554 54837337 0.000000e+00 946.0
43 TraesCS4B01G239500 chr7A 80.300 533 60 20 2618 3136 54833999 54833498 1.190000e-95 361.0
44 TraesCS4B01G239500 chr7A 93.684 95 6 0 3230 3324 409259518 409259612 4.690000e-30 143.0
45 TraesCS4B01G239500 chr7A 90.476 105 6 3 3138 3241 54833457 54833356 7.850000e-28 135.0
46 TraesCS4B01G239500 chr7D 83.380 716 74 21 1741 2446 52333415 52332735 4.940000e-174 621.0
47 TraesCS4B01G239500 chr7D 77.599 558 81 20 1190 1736 52333984 52333460 9.460000e-77 298.0
48 TraesCS4B01G239500 chr7D 93.407 182 7 5 3785 3961 448698728 448698547 9.600000e-67 265.0
49 TraesCS4B01G239500 chr7D 92.857 182 8 5 3785 3961 448696410 448696229 4.470000e-65 259.0
50 TraesCS4B01G239500 chr7D 83.938 193 28 3 1210 1400 101552394 101552203 9.940000e-42 182.0
51 TraesCS4B01G239500 chr7D 81.735 219 22 10 2618 2823 52332663 52332450 2.780000e-37 167.0
52 TraesCS4B01G239500 chr7D 86.822 129 9 6 3118 3241 52332189 52332064 2.180000e-28 137.0
53 TraesCS4B01G239500 chr7D 95.349 43 2 0 224 266 567809326 567809368 8.080000e-08 69.4
54 TraesCS4B01G239500 chr5B 86.930 329 38 4 414 739 34043196 34043522 9.200000e-97 364.0
55 TraesCS4B01G239500 chr5B 92.857 98 6 1 3230 3327 283018624 283018720 1.690000e-29 141.0
56 TraesCS4B01G239500 chr3D 87.066 317 35 4 426 739 402685988 402685675 1.990000e-93 353.0
57 TraesCS4B01G239500 chr3D 96.629 89 2 1 3240 3328 515636212 515636125 3.630000e-31 147.0
58 TraesCS4B01G239500 chr6B 86.435 317 37 5 426 739 422568499 422568812 4.310000e-90 342.0
59 TraesCS4B01G239500 chr2A 86.293 321 35 6 426 739 4831039 4831357 1.550000e-89 340.0
60 TraesCS4B01G239500 chr2A 90.385 104 8 2 2475 2577 53597337 53597439 7.850000e-28 135.0
61 TraesCS4B01G239500 chr6D 86.120 317 39 4 426 739 303614029 303614343 2.010000e-88 337.0
62 TraesCS4B01G239500 chr6D 96.591 88 3 0 3240 3327 144745112 144745025 3.630000e-31 147.0
63 TraesCS4B01G239500 chr3A 86.120 317 37 5 426 739 312002178 312002490 7.210000e-88 335.0
64 TraesCS4B01G239500 chr3A 95.556 90 3 1 3240 3328 673100342 673100253 4.690000e-30 143.0
65 TraesCS4B01G239500 chr3A 95.556 90 3 1 3240 3328 673101908 673101819 4.690000e-30 143.0
66 TraesCS4B01G239500 chr3A 86.885 122 8 3 2464 2584 156232091 156231977 3.650000e-26 130.0
67 TraesCS4B01G239500 chr7B 84.659 176 23 4 1211 1384 159184020 159183847 5.980000e-39 172.0
68 TraesCS4B01G239500 chr7B 89.815 108 9 2 2473 2579 701335161 701335267 2.180000e-28 137.0
69 TraesCS4B01G239500 chr7B 90.099 101 10 0 4400 4500 637198137 637198237 1.020000e-26 132.0
70 TraesCS4B01G239500 chr5A 96.629 89 1 2 3237 3324 555622960 555623047 3.630000e-31 147.0
71 TraesCS4B01G239500 chr3B 96.591 88 3 0 3240 3327 766989809 766989722 3.630000e-31 147.0
72 TraesCS4B01G239500 chr3B 84.962 133 10 5 2475 2604 487221472 487221347 4.730000e-25 126.0
73 TraesCS4B01G239500 chr3B 90.698 43 3 1 4194 4236 150287978 150288019 6.290000e-04 56.5
74 TraesCS4B01G239500 chr1D 96.512 86 3 0 3239 3324 291792043 291791958 4.690000e-30 143.0
75 TraesCS4B01G239500 chr1D 87.611 113 7 2 2465 2577 36360224 36360329 1.700000e-24 124.0
76 TraesCS4B01G239500 chr5D 91.000 100 9 0 4401 4500 500935152 500935053 7.850000e-28 135.0
77 TraesCS4B01G239500 chr5D 89.899 99 10 0 4402 4500 522103592 522103690 1.310000e-25 128.0
78 TraesCS4B01G239500 chr5D 78.947 190 34 5 3912 4097 531289090 531288903 1.700000e-24 124.0
79 TraesCS4B01G239500 chr5D 95.349 43 2 0 224 266 8377236 8377194 8.080000e-08 69.4
80 TraesCS4B01G239500 chr5D 95.349 43 2 0 224 266 78436155 78436113 8.080000e-08 69.4
81 TraesCS4B01G239500 chr6A 88.288 111 7 1 2471 2581 596589345 596589449 1.310000e-25 128.0
82 TraesCS4B01G239500 chr1B 87.826 115 7 2 2475 2589 359902144 359902037 1.310000e-25 128.0
83 TraesCS4B01G239500 chr1B 89.000 100 10 1 4401 4500 1294836 1294738 6.110000e-24 122.0
84 TraesCS4B01G239500 chr1A 89.000 100 11 0 4401 4500 537967278 537967377 1.700000e-24 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G239500 chr4B 496546632 496551131 4499 False 8311.000000 8311 100.000000 1 4500 1 chr4B.!!$F1 4499
1 TraesCS4B01G239500 chr4A 59281610 59285991 4381 False 1063.660000 3681 93.568600 2 4359 5 chr4A.!!$F3 4357
2 TraesCS4B01G239500 chr4A 666938259 666940701 2442 True 399.500000 1055 83.259000 920 3527 4 chr4A.!!$R1 2607
3 TraesCS4B01G239500 chr4D 401530479 401534096 3617 False 1312.500000 3661 92.987250 2 3786 4 chr4D.!!$F1 3784
4 TraesCS4B01G239500 chr2B 781825764 781832861 7097 True 470.428571 1892 86.329286 805 3721 7 chr2B.!!$R1 2916
5 TraesCS4B01G239500 chr2D 647967828 647970694 2866 False 705.750000 1814 86.368250 799 3725 4 chr2D.!!$F4 2926
6 TraesCS4B01G239500 chrUn 31372576 31375245 2669 True 713.000000 1812 87.346750 812 3728 4 chrUn.!!$R4 2916
7 TraesCS4B01G239500 chr7A 54833356 54838554 5198 True 480.666667 946 83.998667 1188 3241 3 chr7A.!!$R1 2053
8 TraesCS4B01G239500 chr7D 52332064 52333984 1920 True 305.750000 621 82.384000 1190 3241 4 chr7D.!!$R2 2051
9 TraesCS4B01G239500 chr7D 448696229 448698728 2499 True 262.000000 265 93.132000 3785 3961 2 chr7D.!!$R3 176

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
889 907 0.107945 GCTGACTTTCTCCGCTCCAT 60.108 55.000 0.00 0.00 0.00 3.41 F
1292 1366 0.461693 AAGATCTCCGAGCAGCTTGC 60.462 55.000 3.76 0.47 45.46 4.01 F
1510 1587 2.268920 GGCAAGCTCATCGGGACA 59.731 61.111 0.00 0.00 0.00 4.02 F
2879 6794 1.145738 ACAATGCCAAACTGGAGAGGT 59.854 47.619 0.00 0.00 40.96 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2561 5976 1.891150 GTTTGTACTCCCTCCGTCTCA 59.109 52.381 0.0 0.00 0.0 3.27 R
2562 5977 2.169330 AGTTTGTACTCCCTCCGTCTC 58.831 52.381 0.0 0.00 0.0 3.36 R
3307 7327 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.0 0.00 0.0 4.12 R
3874 8050 0.109086 TTCTTCCTCGCTCGAAGCTG 60.109 55.000 0.0 0.75 39.6 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
113 115 1.892338 CACCGCCGACCTACCTTAA 59.108 57.895 0.00 0.00 0.00 1.85
131 133 6.540083 ACCTTAACAAGTTAGCAAGGTACAT 58.460 36.000 14.03 0.00 34.03 2.29
132 134 7.682628 ACCTTAACAAGTTAGCAAGGTACATA 58.317 34.615 14.03 0.00 34.03 2.29
133 135 7.605309 ACCTTAACAAGTTAGCAAGGTACATAC 59.395 37.037 14.03 0.00 34.03 2.39
134 136 7.201496 CCTTAACAAGTTAGCAAGGTACATACG 60.201 40.741 0.00 0.00 0.00 3.06
135 137 5.143376 ACAAGTTAGCAAGGTACATACGT 57.857 39.130 0.00 0.00 0.00 3.57
136 138 6.271488 ACAAGTTAGCAAGGTACATACGTA 57.729 37.500 0.00 0.00 0.00 3.57
137 139 6.095377 ACAAGTTAGCAAGGTACATACGTAC 58.905 40.000 0.00 0.00 46.18 3.67
165 167 1.064654 CTTCCTGCAATTCCGCTTAGC 59.935 52.381 0.00 0.00 0.00 3.09
371 374 6.603237 TTGAGTAATGAGTAATTGATGCCG 57.397 37.500 0.00 0.00 0.00 5.69
387 390 1.137872 TGCCGTTGCTTCCAAATTTGT 59.862 42.857 16.73 0.00 38.71 2.83
392 395 4.621034 CCGTTGCTTCCAAATTTGTACATC 59.379 41.667 16.73 7.43 31.68 3.06
465 473 6.882458 ACGAACTTTATTCAACCGAGATAC 57.118 37.500 0.00 0.00 0.00 2.24
473 484 9.698309 CTTTATTCAACCGAGATACATACATCT 57.302 33.333 0.00 0.00 37.99 2.90
510 521 5.049405 GGTACAATTTCATTCATAGGCTCCG 60.049 44.000 0.00 0.00 0.00 4.63
584 595 9.077885 TGCACAACCTTATTTTCTTCTCTATTT 57.922 29.630 0.00 0.00 0.00 1.40
618 629 7.764443 TCGAACCTAGAAATAGGAAAATCACAG 59.236 37.037 8.29 0.00 39.60 3.66
639 650 5.658190 ACAGGCCATAAAAATAGCAGTCATT 59.342 36.000 5.01 0.00 0.00 2.57
672 683 4.379243 CGCTCCTGCCAACCGTCT 62.379 66.667 0.00 0.00 35.36 4.18
741 752 3.134127 GCGATTGCTTCCCGCCTT 61.134 61.111 0.00 0.00 42.77 4.35
748 759 4.693566 CGATTGCTTCCCGCCTTAATATTA 59.306 41.667 0.00 0.00 38.05 0.98
800 811 6.620877 TGTATGACACTTGGATTAGGTCTT 57.379 37.500 0.00 0.00 0.00 3.01
835 849 2.180308 GAGGGAGGGAGAAGGGATAGAA 59.820 54.545 0.00 0.00 0.00 2.10
847 862 1.133419 GGGATAGAAGAGGAGTCCGGT 60.133 57.143 2.76 0.00 0.00 5.28
861 876 2.501128 CGGTGCATCTGGATCCGT 59.499 61.111 7.39 0.00 36.99 4.69
889 907 0.107945 GCTGACTTTCTCCGCTCCAT 60.108 55.000 0.00 0.00 0.00 3.41
1009 1039 2.257409 GAGGAGGAAGATGGCGGCAA 62.257 60.000 18.31 0.00 0.00 4.52
1010 1040 1.378514 GGAGGAAGATGGCGGCAAA 60.379 57.895 18.31 0.00 0.00 3.68
1017 1065 2.134789 AGATGGCGGCAAAGAAGAAT 57.865 45.000 18.31 0.00 0.00 2.40
1098 1146 1.668151 GCCGGAGTTGCTCGAGTTT 60.668 57.895 15.13 0.00 0.00 2.66
1125 1174 4.007644 CTGCGTGAGGTGAGGCCA 62.008 66.667 5.01 0.00 40.61 5.36
1290 1364 1.134848 GTCAAGATCTCCGAGCAGCTT 60.135 52.381 0.00 0.00 0.00 3.74
1292 1366 0.461693 AAGATCTCCGAGCAGCTTGC 60.462 55.000 3.76 0.47 45.46 4.01
1510 1587 2.268920 GGCAAGCTCATCGGGACA 59.731 61.111 0.00 0.00 0.00 4.02
1578 1686 7.043590 CGAGTTTACGGAGATGTTGTATAAAGG 60.044 40.741 0.00 0.00 0.00 3.11
1614 1722 2.589720 TGACCGGTGTTCTTCACTCTA 58.410 47.619 14.63 0.00 45.50 2.43
1760 1917 5.643379 TGCAGGAATTCATTAACTTCACC 57.357 39.130 7.93 0.00 0.00 4.02
1865 2028 5.929992 CCTTCACTGACCGAGTAAATGTTTA 59.070 40.000 0.00 0.00 31.73 2.01
2428 5843 7.543172 GTGCACACAAGATGATGTTTGATAAAT 59.457 33.333 13.17 0.00 33.80 1.40
2475 5890 9.887629 TGTTAACGTCATCCCATTTAATTACTA 57.112 29.630 0.26 0.00 0.00 1.82
2478 5893 8.658499 AACGTCATCCCATTTAATTACTACTC 57.342 34.615 0.00 0.00 0.00 2.59
2479 5894 7.215085 ACGTCATCCCATTTAATTACTACTCC 58.785 38.462 0.00 0.00 0.00 3.85
2480 5895 6.649557 CGTCATCCCATTTAATTACTACTCCC 59.350 42.308 0.00 0.00 0.00 4.30
2481 5896 7.472945 CGTCATCCCATTTAATTACTACTCCCT 60.473 40.741 0.00 0.00 0.00 4.20
2482 5897 8.218488 GTCATCCCATTTAATTACTACTCCCTT 58.782 37.037 0.00 0.00 0.00 3.95
2483 5898 8.437575 TCATCCCATTTAATTACTACTCCCTTC 58.562 37.037 0.00 0.00 0.00 3.46
2484 5899 6.823497 TCCCATTTAATTACTACTCCCTTCG 58.177 40.000 0.00 0.00 0.00 3.79
2485 5900 6.384886 TCCCATTTAATTACTACTCCCTTCGT 59.615 38.462 0.00 0.00 0.00 3.85
2486 5901 7.052248 CCCATTTAATTACTACTCCCTTCGTT 58.948 38.462 0.00 0.00 0.00 3.85
2487 5902 7.226128 CCCATTTAATTACTACTCCCTTCGTTC 59.774 40.741 0.00 0.00 0.00 3.95
2488 5903 7.226128 CCATTTAATTACTACTCCCTTCGTTCC 59.774 40.741 0.00 0.00 0.00 3.62
2489 5904 6.855763 TTAATTACTACTCCCTTCGTTCCA 57.144 37.500 0.00 0.00 0.00 3.53
2490 5905 5.750352 AATTACTACTCCCTTCGTTCCAA 57.250 39.130 0.00 0.00 0.00 3.53
2491 5906 5.750352 ATTACTACTCCCTTCGTTCCAAA 57.250 39.130 0.00 0.00 0.00 3.28
2492 5907 5.549742 TTACTACTCCCTTCGTTCCAAAA 57.450 39.130 0.00 0.00 0.00 2.44
2493 5908 4.635699 ACTACTCCCTTCGTTCCAAAAT 57.364 40.909 0.00 0.00 0.00 1.82
2494 5909 5.750352 ACTACTCCCTTCGTTCCAAAATA 57.250 39.130 0.00 0.00 0.00 1.40
2495 5910 6.117975 ACTACTCCCTTCGTTCCAAAATAA 57.882 37.500 0.00 0.00 0.00 1.40
2496 5911 6.171213 ACTACTCCCTTCGTTCCAAAATAAG 58.829 40.000 0.00 0.00 0.00 1.73
2497 5912 4.981812 ACTCCCTTCGTTCCAAAATAAGT 58.018 39.130 0.00 0.00 0.00 2.24
2498 5913 4.760204 ACTCCCTTCGTTCCAAAATAAGTG 59.240 41.667 0.00 0.00 0.00 3.16
2499 5914 4.721132 TCCCTTCGTTCCAAAATAAGTGT 58.279 39.130 0.00 0.00 0.00 3.55
2500 5915 4.758165 TCCCTTCGTTCCAAAATAAGTGTC 59.242 41.667 0.00 0.00 0.00 3.67
2501 5916 4.760204 CCCTTCGTTCCAAAATAAGTGTCT 59.240 41.667 0.00 0.00 0.00 3.41
2502 5917 5.106673 CCCTTCGTTCCAAAATAAGTGTCTC 60.107 44.000 0.00 0.00 0.00 3.36
2503 5918 5.468746 CCTTCGTTCCAAAATAAGTGTCTCA 59.531 40.000 0.00 0.00 0.00 3.27
2504 5919 6.017440 CCTTCGTTCCAAAATAAGTGTCTCAA 60.017 38.462 0.00 0.00 0.00 3.02
2505 5920 6.295039 TCGTTCCAAAATAAGTGTCTCAAC 57.705 37.500 0.00 0.00 0.00 3.18
2506 5921 6.053005 TCGTTCCAAAATAAGTGTCTCAACT 58.947 36.000 0.00 0.00 0.00 3.16
2507 5922 6.540914 TCGTTCCAAAATAAGTGTCTCAACTT 59.459 34.615 0.00 0.00 42.89 2.66
2508 5923 7.066525 TCGTTCCAAAATAAGTGTCTCAACTTT 59.933 33.333 0.00 0.00 40.77 2.66
2509 5924 7.165812 CGTTCCAAAATAAGTGTCTCAACTTTG 59.834 37.037 0.00 0.00 40.77 2.77
2510 5925 7.639113 TCCAAAATAAGTGTCTCAACTTTGT 57.361 32.000 0.00 0.00 40.77 2.83
2511 5926 8.740123 TCCAAAATAAGTGTCTCAACTTTGTA 57.260 30.769 0.00 0.00 40.77 2.41
2512 5927 8.617809 TCCAAAATAAGTGTCTCAACTTTGTAC 58.382 33.333 0.00 0.00 40.77 2.90
2513 5928 8.621286 CCAAAATAAGTGTCTCAACTTTGTACT 58.379 33.333 0.00 0.00 40.77 2.73
2519 5934 8.788325 AAGTGTCTCAACTTTGTACTAACTTT 57.212 30.769 0.00 0.00 37.05 2.66
2520 5935 8.197988 AGTGTCTCAACTTTGTACTAACTTTG 57.802 34.615 0.00 0.00 0.00 2.77
2521 5936 7.822822 AGTGTCTCAACTTTGTACTAACTTTGT 59.177 33.333 0.00 0.00 0.00 2.83
2522 5937 9.090692 GTGTCTCAACTTTGTACTAACTTTGTA 57.909 33.333 0.00 0.00 0.00 2.41
2523 5938 9.309516 TGTCTCAACTTTGTACTAACTTTGTAG 57.690 33.333 0.00 0.00 0.00 2.74
2524 5939 9.310716 GTCTCAACTTTGTACTAACTTTGTAGT 57.689 33.333 0.00 0.00 37.98 2.73
2525 5940 9.880157 TCTCAACTTTGTACTAACTTTGTAGTT 57.120 29.630 0.00 0.00 46.18 2.24
2553 5968 7.675962 ACAAAGTTGTACTAAGTTTGTGACA 57.324 32.000 26.00 0.00 46.25 3.58
2554 5969 7.524065 ACAAAGTTGTACTAAGTTTGTGACAC 58.476 34.615 26.00 0.00 46.25 3.67
2555 5970 7.389607 ACAAAGTTGTACTAAGTTTGTGACACT 59.610 33.333 26.00 12.47 46.25 3.55
2556 5971 7.916914 AAGTTGTACTAAGTTTGTGACACTT 57.083 32.000 7.20 3.05 38.13 3.16
2557 5972 9.439500 AAAGTTGTACTAAGTTTGTGACACTTA 57.561 29.630 7.20 0.00 35.95 2.24
2558 5973 9.609346 AAGTTGTACTAAGTTTGTGACACTTAT 57.391 29.630 7.20 0.00 36.39 1.73
2559 5974 9.609346 AGTTGTACTAAGTTTGTGACACTTATT 57.391 29.630 7.20 0.00 36.39 1.40
2565 5980 9.391006 ACTAAGTTTGTGACACTTATTTTGAGA 57.609 29.630 7.20 0.00 36.39 3.27
2566 5981 9.651718 CTAAGTTTGTGACACTTATTTTGAGAC 57.348 33.333 7.20 0.00 36.39 3.36
2567 5982 6.715464 AGTTTGTGACACTTATTTTGAGACG 58.285 36.000 7.20 0.00 0.00 4.18
2568 5983 5.666969 TTGTGACACTTATTTTGAGACGG 57.333 39.130 7.20 0.00 0.00 4.79
2569 5984 4.951254 TGTGACACTTATTTTGAGACGGA 58.049 39.130 7.20 0.00 0.00 4.69
2570 5985 4.988540 TGTGACACTTATTTTGAGACGGAG 59.011 41.667 7.20 0.00 0.00 4.63
2571 5986 4.389077 GTGACACTTATTTTGAGACGGAGG 59.611 45.833 0.00 0.00 0.00 4.30
2572 5987 3.933332 GACACTTATTTTGAGACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2573 5988 3.581332 ACACTTATTTTGAGACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2871 6786 1.269936 GCTTGAGCACAATGCCAAACT 60.270 47.619 0.00 0.00 46.52 2.66
2879 6794 1.145738 ACAATGCCAAACTGGAGAGGT 59.854 47.619 0.00 0.00 40.96 3.85
3026 7006 2.052468 AGCATGAGGGCAGTATCATCA 58.948 47.619 0.00 0.00 33.91 3.07
3040 7020 7.229306 GGCAGTATCATCAAATATCCAACTTCA 59.771 37.037 0.00 0.00 0.00 3.02
3070 7050 2.654863 TGATCATCGAGCTGTAGTGGA 58.345 47.619 0.00 0.00 0.00 4.02
3249 7269 3.206150 CCATTGTGATTTACTCCCTCCG 58.794 50.000 0.00 0.00 0.00 4.63
3251 7271 3.604875 TTGTGATTTACTCCCTCCGTC 57.395 47.619 0.00 0.00 0.00 4.79
3254 7274 1.273381 TGATTTACTCCCTCCGTCCCA 60.273 52.381 0.00 0.00 0.00 4.37
3261 7281 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
3262 7282 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
3264 7284 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
3265 7285 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
3266 7286 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
3267 7287 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
3269 7289 5.490159 TCCGTCCCAAAATATAAGAACGTT 58.510 37.500 0.00 0.00 0.00 3.99
3271 7291 6.430616 TCCGTCCCAAAATATAAGAACGTTTT 59.569 34.615 0.46 0.00 0.00 2.43
3272 7292 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
3273 7293 7.061326 CCGTCCCAAAATATAAGAACGTTTTTG 59.939 37.037 13.87 12.16 37.14 2.44
3274 7294 7.804129 CGTCCCAAAATATAAGAACGTTTTTGA 59.196 33.333 13.87 2.81 38.79 2.69
3275 7295 8.908678 GTCCCAAAATATAAGAACGTTTTTGAC 58.091 33.333 13.87 5.89 38.79 3.18
3276 7296 8.630917 TCCCAAAATATAAGAACGTTTTTGACA 58.369 29.630 13.87 0.01 38.79 3.58
3277 7297 8.696175 CCCAAAATATAAGAACGTTTTTGACAC 58.304 33.333 13.87 0.00 38.79 3.67
3354 7456 7.811236 CGAAACATTACTCTGTTACTCCACTTA 59.189 37.037 0.00 0.00 38.38 2.24
3472 7588 3.702555 GACGACACGGTGCAGCAC 61.703 66.667 17.97 17.97 0.00 4.40
3697 7873 0.732571 ACAGCGGATTTTGTATGCGG 59.267 50.000 0.00 0.00 33.43 5.69
3728 7904 2.988493 GCAAATGTATGCGGCCATATTG 59.012 45.455 2.24 0.00 36.40 1.90
3798 7974 2.781681 TAGTTAGGCAGAGGCAAACC 57.218 50.000 0.00 0.00 43.71 3.27
3873 8049 0.034059 GACAGATATGACAGGGCCGG 59.966 60.000 0.79 0.79 0.00 6.13
3874 8050 1.302033 CAGATATGACAGGGCCGGC 60.302 63.158 21.18 21.18 0.00 6.13
3876 8052 1.302033 GATATGACAGGGCCGGCAG 60.302 63.158 30.85 19.78 0.00 4.85
3877 8053 3.482232 ATATGACAGGGCCGGCAGC 62.482 63.158 30.85 12.08 42.60 5.25
3898 8076 1.464734 TCGAGCGAGGAAGAAGATGT 58.535 50.000 0.00 0.00 0.00 3.06
3910 8088 4.024048 GGAAGAAGATGTGTTTCTTTCGCA 60.024 41.667 2.20 0.00 43.07 5.10
3921 8099 4.338118 TGTTTCTTTCGCATCCTCTGTTTT 59.662 37.500 0.00 0.00 0.00 2.43
3967 8148 7.759489 TTTTATGCAGAGAAATTACCACAGT 57.241 32.000 0.00 0.00 0.00 3.55
3969 8150 7.759489 TTATGCAGAGAAATTACCACAGTTT 57.241 32.000 0.00 0.00 0.00 2.66
3970 8151 6.655078 ATGCAGAGAAATTACCACAGTTTT 57.345 33.333 0.00 0.00 0.00 2.43
3971 8152 5.830912 TGCAGAGAAATTACCACAGTTTTG 58.169 37.500 0.00 0.00 0.00 2.44
3972 8153 5.221224 TGCAGAGAAATTACCACAGTTTTGG 60.221 40.000 0.00 0.00 43.04 3.28
3974 8155 6.460953 GCAGAGAAATTACCACAGTTTTGGAA 60.461 38.462 0.00 0.00 39.24 3.53
3975 8156 7.488322 CAGAGAAATTACCACAGTTTTGGAAA 58.512 34.615 0.00 0.00 39.24 3.13
3976 8157 8.143835 CAGAGAAATTACCACAGTTTTGGAAAT 58.856 33.333 0.00 0.00 39.24 2.17
3977 8158 9.362151 AGAGAAATTACCACAGTTTTGGAAATA 57.638 29.630 0.00 0.00 39.24 1.40
3979 8160 9.143155 AGAAATTACCACAGTTTTGGAAATACT 57.857 29.630 0.00 0.00 39.24 2.12
3983 8164 6.877611 ACCACAGTTTTGGAAATACTACAG 57.122 37.500 0.00 0.00 39.24 2.74
3984 8165 6.362248 ACCACAGTTTTGGAAATACTACAGT 58.638 36.000 0.00 0.00 39.24 3.55
3985 8166 7.511268 ACCACAGTTTTGGAAATACTACAGTA 58.489 34.615 0.00 0.00 39.24 2.74
4007 8188 9.840427 CAGTATTATTACTTTGGTTTTCAGTGG 57.160 33.333 0.00 0.00 36.50 4.00
4008 8189 9.582648 AGTATTATTACTTTGGTTTTCAGTGGT 57.417 29.630 0.00 0.00 34.99 4.16
4011 8192 8.983702 TTATTACTTTGGTTTTCAGTGGTAGT 57.016 30.769 0.00 0.00 0.00 2.73
4012 8193 6.930667 TTACTTTGGTTTTCAGTGGTAGTC 57.069 37.500 0.00 0.00 0.00 2.59
4015 8196 5.357032 ACTTTGGTTTTCAGTGGTAGTCAAG 59.643 40.000 0.00 0.00 0.00 3.02
4016 8197 3.211045 TGGTTTTCAGTGGTAGTCAAGC 58.789 45.455 0.00 0.00 0.00 4.01
4017 8198 3.211045 GGTTTTCAGTGGTAGTCAAGCA 58.789 45.455 0.00 0.00 0.00 3.91
4026 8207 2.438021 TGGTAGTCAAGCACCTCAAAGT 59.562 45.455 0.00 0.00 35.73 2.66
4027 8208 3.644265 TGGTAGTCAAGCACCTCAAAGTA 59.356 43.478 0.00 0.00 35.73 2.24
4028 8209 4.101898 TGGTAGTCAAGCACCTCAAAGTAA 59.898 41.667 0.00 0.00 35.73 2.24
4029 8210 5.061179 GGTAGTCAAGCACCTCAAAGTAAA 58.939 41.667 0.00 0.00 0.00 2.01
4030 8211 5.705905 GGTAGTCAAGCACCTCAAAGTAAAT 59.294 40.000 0.00 0.00 0.00 1.40
4031 8212 6.877322 GGTAGTCAAGCACCTCAAAGTAAATA 59.123 38.462 0.00 0.00 0.00 1.40
4032 8213 7.389607 GGTAGTCAAGCACCTCAAAGTAAATAA 59.610 37.037 0.00 0.00 0.00 1.40
4033 8214 7.817418 AGTCAAGCACCTCAAAGTAAATAAA 57.183 32.000 0.00 0.00 0.00 1.40
4034 8215 8.232913 AGTCAAGCACCTCAAAGTAAATAAAA 57.767 30.769 0.00 0.00 0.00 1.52
4035 8216 8.135529 AGTCAAGCACCTCAAAGTAAATAAAAC 58.864 33.333 0.00 0.00 0.00 2.43
4104 9223 3.603158 TTCGCTATCAAACACAGCCTA 57.397 42.857 0.00 0.00 31.43 3.93
4105 9224 3.603158 TCGCTATCAAACACAGCCTAA 57.397 42.857 0.00 0.00 31.43 2.69
4106 9225 3.521560 TCGCTATCAAACACAGCCTAAG 58.478 45.455 0.00 0.00 31.43 2.18
4116 9235 2.949644 ACACAGCCTAAGTGGTTTGAAC 59.050 45.455 0.00 0.00 41.21 3.18
4132 9252 3.337694 TGAACGGGTAGTTGGTAATGG 57.662 47.619 0.00 0.00 44.35 3.16
4142 9262 4.600692 AGTTGGTAATGGGAGTTTTTGC 57.399 40.909 0.00 0.00 0.00 3.68
4170 9740 5.065731 CCTAGCAGATTCATGGAGTTTTGTC 59.934 44.000 0.00 0.00 0.00 3.18
4171 9741 4.401022 AGCAGATTCATGGAGTTTTGTCA 58.599 39.130 0.00 0.00 0.00 3.58
4178 9748 5.247507 TCATGGAGTTTTGTCAGTGTTTG 57.752 39.130 0.00 0.00 0.00 2.93
4183 9753 4.091453 AGTTTTGTCAGTGTTTGTTCCG 57.909 40.909 0.00 0.00 0.00 4.30
4186 9756 5.181622 AGTTTTGTCAGTGTTTGTTCCGTTA 59.818 36.000 0.00 0.00 0.00 3.18
4189 9759 4.255301 TGTCAGTGTTTGTTCCGTTAGTT 58.745 39.130 0.00 0.00 0.00 2.24
4217 9787 6.564557 ACTCCCTCCGTACCAAAATATAAA 57.435 37.500 0.00 0.00 0.00 1.40
4221 9791 5.585844 CCCTCCGTACCAAAATATAAAACGT 59.414 40.000 0.00 0.00 0.00 3.99
4311 10018 9.793252 ATATCTCATTTTGTTATGTCTTTGCAC 57.207 29.630 0.00 0.00 0.00 4.57
4383 11144 4.978083 TTTTTAGCAACACCGTTGGTTA 57.022 36.364 15.77 5.38 31.02 2.85
4384 11145 5.517322 TTTTTAGCAACACCGTTGGTTAT 57.483 34.783 15.77 0.00 31.02 1.89
4385 11146 6.630444 TTTTTAGCAACACCGTTGGTTATA 57.370 33.333 15.77 1.29 31.02 0.98
4386 11147 6.821031 TTTTAGCAACACCGTTGGTTATAT 57.179 33.333 15.77 0.00 31.02 0.86
4387 11148 6.821031 TTTAGCAACACCGTTGGTTATATT 57.179 33.333 15.77 0.00 31.02 1.28
4389 11150 5.054390 AGCAACACCGTTGGTTATATTTG 57.946 39.130 5.77 0.00 31.02 2.32
4390 11151 4.521256 AGCAACACCGTTGGTTATATTTGT 59.479 37.500 5.77 0.00 31.02 2.83
4393 11154 6.525280 GCAACACCGTTGGTTATATTTGTAAG 59.475 38.462 8.79 0.00 31.02 2.34
4394 11155 6.185852 ACACCGTTGGTTATATTTGTAAGC 57.814 37.500 0.00 0.00 31.02 3.09
4397 11158 5.355910 ACCGTTGGTTATATTTGTAAGCAGG 59.644 40.000 0.00 0.00 41.43 4.85
4398 11159 5.220970 CCGTTGGTTATATTTGTAAGCAGGG 60.221 44.000 0.00 0.00 41.43 4.45
4399 11160 5.220970 CGTTGGTTATATTTGTAAGCAGGGG 60.221 44.000 0.00 0.00 41.43 4.79
4400 11161 5.459982 TGGTTATATTTGTAAGCAGGGGT 57.540 39.130 0.00 0.00 37.20 4.95
4401 11162 5.197451 TGGTTATATTTGTAAGCAGGGGTG 58.803 41.667 0.00 0.00 37.20 4.61
4402 11163 5.044772 TGGTTATATTTGTAAGCAGGGGTGA 60.045 40.000 0.00 0.00 37.20 4.02
4403 11164 5.531287 GGTTATATTTGTAAGCAGGGGTGAG 59.469 44.000 0.00 0.00 33.46 3.51
4418 13989 4.131088 GAGGACAGGGCGTCGACC 62.131 72.222 9.89 9.89 46.42 4.79
4453 14024 3.813724 GGGTAGCTGCCAGCCCAT 61.814 66.667 23.21 0.00 43.77 4.00
4454 14025 2.203266 GGTAGCTGCCAGCCCATC 60.203 66.667 16.95 0.00 43.77 3.51
4455 14026 2.203266 GTAGCTGCCAGCCCATCC 60.203 66.667 14.25 0.00 43.77 3.51
4456 14027 2.691996 TAGCTGCCAGCCCATCCA 60.692 61.111 14.25 0.00 43.77 3.41
4457 14028 2.307942 TAGCTGCCAGCCCATCCAA 61.308 57.895 14.25 0.00 43.77 3.53
4458 14029 2.274948 TAGCTGCCAGCCCATCCAAG 62.275 60.000 14.25 0.00 43.77 3.61
4460 14031 1.304713 CTGCCAGCCCATCCAAGTT 60.305 57.895 0.00 0.00 0.00 2.66
4461 14032 1.304381 TGCCAGCCCATCCAAGTTC 60.304 57.895 0.00 0.00 0.00 3.01
4462 14033 1.304381 GCCAGCCCATCCAAGTTCA 60.304 57.895 0.00 0.00 0.00 3.18
4463 14034 0.899717 GCCAGCCCATCCAAGTTCAA 60.900 55.000 0.00 0.00 0.00 2.69
4464 14035 1.180029 CCAGCCCATCCAAGTTCAAG 58.820 55.000 0.00 0.00 0.00 3.02
4465 14036 0.529378 CAGCCCATCCAAGTTCAAGC 59.471 55.000 0.00 0.00 0.00 4.01
4466 14037 0.613012 AGCCCATCCAAGTTCAAGCC 60.613 55.000 0.00 0.00 0.00 4.35
4467 14038 1.607801 GCCCATCCAAGTTCAAGCCC 61.608 60.000 0.00 0.00 0.00 5.19
4468 14039 0.972471 CCCATCCAAGTTCAAGCCCC 60.972 60.000 0.00 0.00 0.00 5.80
4470 14041 1.180029 CATCCAAGTTCAAGCCCCAG 58.820 55.000 0.00 0.00 0.00 4.45
4471 14042 0.613012 ATCCAAGTTCAAGCCCCAGC 60.613 55.000 0.00 0.00 40.32 4.85
4481 14052 2.575461 GCCCCAGCTTTGACATGC 59.425 61.111 0.00 0.00 35.50 4.06
4485 14056 1.210931 CCAGCTTTGACATGCGGTG 59.789 57.895 0.00 0.00 0.00 4.94
4486 14057 1.443194 CAGCTTTGACATGCGGTGC 60.443 57.895 0.00 0.00 0.00 5.01
4489 14060 1.133253 CTTTGACATGCGGTGCTCG 59.867 57.895 0.00 0.00 42.76 5.03
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 65 2.789917 CTGAGGACGCAGCAATGC 59.210 61.111 0.00 0.00 0.00 3.56
98 100 1.067354 ACTTGTTAAGGTAGGTCGGCG 60.067 52.381 0.00 0.00 0.00 6.46
110 112 7.153985 ACGTATGTACCTTGCTAACTTGTTAA 58.846 34.615 0.00 0.00 0.00 2.01
113 115 5.143376 ACGTATGTACCTTGCTAACTTGT 57.857 39.130 0.00 0.00 0.00 3.16
131 133 2.029649 GCAGGAAGGTCAACTGTACGTA 60.030 50.000 0.00 0.00 34.79 3.57
132 134 1.270147 GCAGGAAGGTCAACTGTACGT 60.270 52.381 0.00 0.00 34.79 3.57
133 135 1.270094 TGCAGGAAGGTCAACTGTACG 60.270 52.381 0.00 0.00 34.79 3.67
134 136 2.543777 TGCAGGAAGGTCAACTGTAC 57.456 50.000 0.00 0.00 34.79 2.90
135 137 3.788227 ATTGCAGGAAGGTCAACTGTA 57.212 42.857 0.00 0.00 34.79 2.74
136 138 2.664402 ATTGCAGGAAGGTCAACTGT 57.336 45.000 0.00 0.00 34.79 3.55
137 139 2.229784 GGAATTGCAGGAAGGTCAACTG 59.770 50.000 0.00 0.00 35.40 3.16
138 140 2.519013 GGAATTGCAGGAAGGTCAACT 58.481 47.619 0.00 0.00 0.00 3.16
139 141 1.200020 CGGAATTGCAGGAAGGTCAAC 59.800 52.381 0.00 0.00 0.00 3.18
165 167 5.032327 TCATCTTCATGTTCCCAGATCTG 57.968 43.478 16.24 16.24 0.00 2.90
371 374 5.634859 CCAGATGTACAAATTTGGAAGCAAC 59.365 40.000 21.74 7.95 34.45 4.17
465 473 6.764308 ACCATTCCTCACAAAAGATGTATG 57.236 37.500 0.00 0.00 41.46 2.39
473 484 7.353414 TGAAATTGTACCATTCCTCACAAAA 57.647 32.000 0.00 0.00 34.79 2.44
510 521 5.689383 TCTTCTACTGTTGATTGGTTTGC 57.311 39.130 0.00 0.00 0.00 3.68
618 629 8.940768 TTTTAATGACTGCTATTTTTATGGCC 57.059 30.769 0.00 0.00 0.00 5.36
639 650 3.728636 CGGCGGCGGCAGTTTTTA 61.729 61.111 32.59 0.00 42.47 1.52
748 759 5.761234 TCGGCAAAAGAATAACACTAACACT 59.239 36.000 0.00 0.00 0.00 3.55
770 781 8.712363 CCTAATCCAAGTGTCATACAATATTCG 58.288 37.037 0.00 0.00 0.00 3.34
835 849 1.000993 AGATGCACCGGACTCCTCT 59.999 57.895 9.46 0.00 0.00 3.69
847 862 2.190313 GGCACGGATCCAGATGCA 59.810 61.111 25.77 0.00 39.92 3.96
861 876 2.203337 AAAGTCAGCTTGGCGGCA 60.203 55.556 7.97 7.97 34.71 5.69
889 907 1.690633 GGAGGTGGAGGAGGATGCA 60.691 63.158 0.00 0.00 0.00 3.96
923 941 0.031585 GACCGCGTGATATAGCACCA 59.968 55.000 15.17 0.00 35.37 4.17
1009 1039 1.678970 GCACCCCGGCATTCTTCTT 60.679 57.895 0.00 0.00 0.00 2.52
1010 1040 2.044946 GCACCCCGGCATTCTTCT 60.045 61.111 0.00 0.00 0.00 2.85
1087 1135 1.393539 GCGCTTCATAAACTCGAGCAA 59.606 47.619 13.61 0.00 33.07 3.91
1098 1146 1.519234 CTCACGCAGGCGCTTCATA 60.519 57.895 14.32 0.00 44.19 2.15
1312 1386 5.233225 CAGACTGTACTGCTGAATCAAAGA 58.767 41.667 14.56 0.00 0.00 2.52
1510 1587 1.599797 GGCGTGGGCACTTACTTGT 60.600 57.895 0.00 0.00 42.47 3.16
1578 1686 2.609459 CGGTCAATATTCAGCTGTGGAC 59.391 50.000 14.67 7.31 0.00 4.02
1614 1722 2.498167 AGATGCGTTTTCAAGCTCTGT 58.502 42.857 0.00 0.00 0.00 3.41
1667 1779 2.228138 TACAAGAAAGAACGCCACGT 57.772 45.000 0.00 0.00 43.97 4.49
1760 1917 4.097741 TCCAAATCCGCAATGTAATGAAGG 59.902 41.667 0.00 0.00 0.00 3.46
1865 2028 5.627182 ATTCTATGAATGTGCCTCTGAGT 57.373 39.130 3.66 0.00 0.00 3.41
2428 5843 6.463995 ACAGAATAACAGTGGCTTGAAAAA 57.536 33.333 0.00 0.00 0.00 1.94
2475 5890 4.760204 CACTTATTTTGGAACGAAGGGAGT 59.240 41.667 0.00 0.00 0.00 3.85
2476 5891 4.760204 ACACTTATTTTGGAACGAAGGGAG 59.240 41.667 0.00 0.00 0.00 4.30
2477 5892 4.721132 ACACTTATTTTGGAACGAAGGGA 58.279 39.130 0.00 0.00 0.00 4.20
2478 5893 4.760204 AGACACTTATTTTGGAACGAAGGG 59.240 41.667 0.00 0.00 0.00 3.95
2479 5894 5.468746 TGAGACACTTATTTTGGAACGAAGG 59.531 40.000 0.00 0.00 0.00 3.46
2480 5895 6.539649 TGAGACACTTATTTTGGAACGAAG 57.460 37.500 0.00 0.00 0.00 3.79
2481 5896 6.540914 AGTTGAGACACTTATTTTGGAACGAA 59.459 34.615 0.00 0.00 0.00 3.85
2482 5897 6.053005 AGTTGAGACACTTATTTTGGAACGA 58.947 36.000 0.00 0.00 0.00 3.85
2483 5898 6.300354 AGTTGAGACACTTATTTTGGAACG 57.700 37.500 0.00 0.00 0.00 3.95
2484 5899 7.973944 ACAAAGTTGAGACACTTATTTTGGAAC 59.026 33.333 0.00 0.00 35.87 3.62
2485 5900 8.062065 ACAAAGTTGAGACACTTATTTTGGAA 57.938 30.769 0.00 0.00 35.87 3.53
2486 5901 7.639113 ACAAAGTTGAGACACTTATTTTGGA 57.361 32.000 0.00 0.00 35.87 3.53
2487 5902 8.621286 AGTACAAAGTTGAGACACTTATTTTGG 58.379 33.333 0.00 0.00 35.87 3.28
2493 5908 9.880157 AAAGTTAGTACAAAGTTGAGACACTTA 57.120 29.630 0.00 0.00 35.87 2.24
2494 5909 8.665685 CAAAGTTAGTACAAAGTTGAGACACTT 58.334 33.333 0.00 0.98 38.74 3.16
2495 5910 7.822822 ACAAAGTTAGTACAAAGTTGAGACACT 59.177 33.333 0.00 0.00 0.00 3.55
2496 5911 7.971455 ACAAAGTTAGTACAAAGTTGAGACAC 58.029 34.615 0.00 0.00 0.00 3.67
2497 5912 9.309516 CTACAAAGTTAGTACAAAGTTGAGACA 57.690 33.333 0.00 0.00 0.00 3.41
2498 5913 9.310716 ACTACAAAGTTAGTACAAAGTTGAGAC 57.689 33.333 0.00 0.00 29.00 3.36
2499 5914 9.880157 AACTACAAAGTTAGTACAAAGTTGAGA 57.120 29.630 0.00 0.00 44.26 3.27
2528 5943 8.658609 GTGTCACAAACTTAGTACAACTTTGTA 58.341 33.333 0.00 0.00 42.35 2.41
2529 5944 7.389607 AGTGTCACAAACTTAGTACAACTTTGT 59.610 33.333 5.62 0.00 44.86 2.83
2530 5945 7.748847 AGTGTCACAAACTTAGTACAACTTTG 58.251 34.615 5.62 0.10 0.00 2.77
2531 5946 7.916914 AGTGTCACAAACTTAGTACAACTTT 57.083 32.000 5.62 0.00 0.00 2.66
2532 5947 7.916914 AAGTGTCACAAACTTAGTACAACTT 57.083 32.000 5.62 0.00 36.11 2.66
2533 5948 9.609346 AATAAGTGTCACAAACTTAGTACAACT 57.391 29.630 5.62 0.00 41.95 3.16
2539 5954 9.391006 TCTCAAAATAAGTGTCACAAACTTAGT 57.609 29.630 5.62 0.00 41.95 2.24
2540 5955 9.651718 GTCTCAAAATAAGTGTCACAAACTTAG 57.348 33.333 5.62 0.00 41.95 2.18
2541 5956 8.332464 CGTCTCAAAATAAGTGTCACAAACTTA 58.668 33.333 5.62 0.00 42.63 2.24
2542 5957 7.186804 CGTCTCAAAATAAGTGTCACAAACTT 58.813 34.615 5.62 0.00 40.82 2.66
2543 5958 6.238374 CCGTCTCAAAATAAGTGTCACAAACT 60.238 38.462 5.62 0.00 0.00 2.66
2544 5959 5.907391 CCGTCTCAAAATAAGTGTCACAAAC 59.093 40.000 5.62 0.00 0.00 2.93
2545 5960 5.818336 TCCGTCTCAAAATAAGTGTCACAAA 59.182 36.000 5.62 0.00 0.00 2.83
2546 5961 5.361427 TCCGTCTCAAAATAAGTGTCACAA 58.639 37.500 5.62 0.00 0.00 3.33
2547 5962 4.951254 TCCGTCTCAAAATAAGTGTCACA 58.049 39.130 5.62 0.00 0.00 3.58
2548 5963 4.389077 CCTCCGTCTCAAAATAAGTGTCAC 59.611 45.833 0.00 0.00 0.00 3.67
2549 5964 4.562757 CCCTCCGTCTCAAAATAAGTGTCA 60.563 45.833 0.00 0.00 0.00 3.58
2550 5965 3.933332 CCCTCCGTCTCAAAATAAGTGTC 59.067 47.826 0.00 0.00 0.00 3.67
2551 5966 3.581332 TCCCTCCGTCTCAAAATAAGTGT 59.419 43.478 0.00 0.00 0.00 3.55
2552 5967 4.184629 CTCCCTCCGTCTCAAAATAAGTG 58.815 47.826 0.00 0.00 0.00 3.16
2553 5968 3.838903 ACTCCCTCCGTCTCAAAATAAGT 59.161 43.478 0.00 0.00 0.00 2.24
2554 5969 4.473477 ACTCCCTCCGTCTCAAAATAAG 57.527 45.455 0.00 0.00 0.00 1.73
2555 5970 4.773674 TGTACTCCCTCCGTCTCAAAATAA 59.226 41.667 0.00 0.00 0.00 1.40
2556 5971 4.346730 TGTACTCCCTCCGTCTCAAAATA 58.653 43.478 0.00 0.00 0.00 1.40
2557 5972 3.170717 TGTACTCCCTCCGTCTCAAAAT 58.829 45.455 0.00 0.00 0.00 1.82
2558 5973 2.600790 TGTACTCCCTCCGTCTCAAAA 58.399 47.619 0.00 0.00 0.00 2.44
2559 5974 2.297698 TGTACTCCCTCCGTCTCAAA 57.702 50.000 0.00 0.00 0.00 2.69
2560 5975 2.297698 TTGTACTCCCTCCGTCTCAA 57.702 50.000 0.00 0.00 0.00 3.02
2561 5976 1.891150 GTTTGTACTCCCTCCGTCTCA 59.109 52.381 0.00 0.00 0.00 3.27
2562 5977 2.169330 AGTTTGTACTCCCTCCGTCTC 58.831 52.381 0.00 0.00 0.00 3.36
2563 5978 2.305858 AGTTTGTACTCCCTCCGTCT 57.694 50.000 0.00 0.00 0.00 4.18
2564 5979 3.675502 GCTAAGTTTGTACTCCCTCCGTC 60.676 52.174 0.00 0.00 31.99 4.79
2565 5980 2.233186 GCTAAGTTTGTACTCCCTCCGT 59.767 50.000 0.00 0.00 31.99 4.69
2566 5981 2.496470 AGCTAAGTTTGTACTCCCTCCG 59.504 50.000 0.00 0.00 31.99 4.63
2567 5982 3.261137 ACAGCTAAGTTTGTACTCCCTCC 59.739 47.826 0.00 0.00 31.99 4.30
2568 5983 4.538746 ACAGCTAAGTTTGTACTCCCTC 57.461 45.455 0.00 0.00 31.99 4.30
2569 5984 5.402997 GTACAGCTAAGTTTGTACTCCCT 57.597 43.478 8.47 0.00 43.85 4.20
2871 6786 4.871871 AGATGTTCTCTCTACCTCTCCA 57.128 45.455 0.00 0.00 0.00 3.86
3026 7006 8.859090 TCAACAATTCAGTGAAGTTGGATATTT 58.141 29.630 25.76 12.57 39.84 1.40
3040 7020 4.331992 CAGCTCGATGATCAACAATTCAGT 59.668 41.667 0.00 0.00 0.00 3.41
3070 7050 3.821033 GGTGAAAAGGTAGTTGCTGACAT 59.179 43.478 0.00 0.00 0.00 3.06
3249 7269 8.908678 GTCAAAAACGTTCTTATATTTTGGGAC 58.091 33.333 15.53 7.20 39.94 4.46
3251 7271 8.696175 GTGTCAAAAACGTTCTTATATTTTGGG 58.304 33.333 15.53 0.00 39.94 4.12
3261 7281 8.603242 ACTATCATAGTGTCAAAAACGTTCTT 57.397 30.769 0.00 0.00 37.69 2.52
3290 7310 7.040548 TCCGTCCCAAAATATAAGAACGTTTTT 60.041 33.333 9.22 9.22 0.00 1.94
3292 7312 5.939296 TCCGTCCCAAAATATAAGAACGTTT 59.061 36.000 0.46 0.00 0.00 3.60
3294 7314 5.088680 TCCGTCCCAAAATATAAGAACGT 57.911 39.130 0.00 0.00 0.00 3.99
3295 7315 4.510340 CCTCCGTCCCAAAATATAAGAACG 59.490 45.833 0.00 0.00 0.00 3.95
3296 7316 4.820173 CCCTCCGTCCCAAAATATAAGAAC 59.180 45.833 0.00 0.00 0.00 3.01
3297 7317 4.722781 TCCCTCCGTCCCAAAATATAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
3298 7318 4.300345 TCCCTCCGTCCCAAAATATAAGA 58.700 43.478 0.00 0.00 0.00 2.10
3299 7319 4.102681 ACTCCCTCCGTCCCAAAATATAAG 59.897 45.833 0.00 0.00 0.00 1.73
3300 7320 4.042174 ACTCCCTCCGTCCCAAAATATAA 58.958 43.478 0.00 0.00 0.00 0.98
3301 7321 3.660959 ACTCCCTCCGTCCCAAAATATA 58.339 45.455 0.00 0.00 0.00 0.86
3303 7323 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
3305 7325 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
3307 7327 0.115745 AACTACTCCCTCCGTCCCAA 59.884 55.000 0.00 0.00 0.00 4.12
3308 7328 0.613853 CAACTACTCCCTCCGTCCCA 60.614 60.000 0.00 0.00 0.00 4.37
3310 7330 1.516423 GCAACTACTCCCTCCGTCC 59.484 63.158 0.00 0.00 0.00 4.79
3354 7456 4.357918 AAACTGAGCCAGACACACTAAT 57.642 40.909 8.91 0.00 35.18 1.73
3472 7588 4.933505 TGACAGGAAGATAGATCTGCAG 57.066 45.455 7.63 7.63 37.19 4.41
3632 7791 5.802064 TCTGTTTACAACAACAATGACGAC 58.198 37.500 0.00 0.00 41.61 4.34
3661 7820 7.241663 TCCGCTGTTTGTGAATGTATAATAC 57.758 36.000 0.00 0.00 0.00 1.89
3663 7822 6.942532 ATCCGCTGTTTGTGAATGTATAAT 57.057 33.333 0.00 0.00 0.00 1.28
3721 7897 2.669569 CTCGCCGGCCCAATATGG 60.670 66.667 23.46 3.72 37.25 2.74
3747 7923 5.362430 TCCATAAAAACAAACAACAGAGGCT 59.638 36.000 0.00 0.00 0.00 4.58
3779 7955 1.066430 CGGTTTGCCTCTGCCTAACTA 60.066 52.381 0.00 0.00 36.33 2.24
3813 7989 2.431057 CTCCAGCTTACATTACTCCCGT 59.569 50.000 0.00 0.00 0.00 5.28
3822 7998 3.135530 GGACTTCATCCTCCAGCTTACAT 59.864 47.826 0.00 0.00 45.22 2.29
3873 8049 2.125912 TTCCTCGCTCGAAGCTGC 60.126 61.111 0.00 0.00 39.60 5.25
3874 8050 0.109086 TTCTTCCTCGCTCGAAGCTG 60.109 55.000 0.00 0.75 39.60 4.24
3876 8052 0.171455 TCTTCTTCCTCGCTCGAAGC 59.829 55.000 0.00 0.00 37.29 3.86
3877 8053 2.159310 ACATCTTCTTCCTCGCTCGAAG 60.159 50.000 0.00 0.00 38.47 3.79
3878 8054 1.819288 ACATCTTCTTCCTCGCTCGAA 59.181 47.619 0.00 0.00 0.00 3.71
3879 8055 1.133216 CACATCTTCTTCCTCGCTCGA 59.867 52.381 0.00 0.00 0.00 4.04
3880 8056 1.135257 ACACATCTTCTTCCTCGCTCG 60.135 52.381 0.00 0.00 0.00 5.03
3881 8057 2.663826 ACACATCTTCTTCCTCGCTC 57.336 50.000 0.00 0.00 0.00 5.03
3882 8058 3.007398 AGAAACACATCTTCTTCCTCGCT 59.993 43.478 0.00 0.00 28.46 4.93
3898 8076 3.126001 ACAGAGGATGCGAAAGAAACA 57.874 42.857 0.00 0.00 0.00 2.83
3961 8142 6.877611 ACTGTAGTATTTCCAAAACTGTGG 57.122 37.500 0.00 0.00 40.33 4.17
3981 8162 9.840427 CCACTGAAAACCAAAGTAATAATACTG 57.160 33.333 0.00 0.00 41.57 2.74
3985 8166 9.582648 ACTACCACTGAAAACCAAAGTAATAAT 57.417 29.630 0.00 0.00 0.00 1.28
3987 8168 8.212312 TGACTACCACTGAAAACCAAAGTAATA 58.788 33.333 0.00 0.00 0.00 0.98
3988 8169 7.057894 TGACTACCACTGAAAACCAAAGTAAT 58.942 34.615 0.00 0.00 0.00 1.89
3990 8171 5.991861 TGACTACCACTGAAAACCAAAGTA 58.008 37.500 0.00 0.00 0.00 2.24
3991 8172 4.850680 TGACTACCACTGAAAACCAAAGT 58.149 39.130 0.00 0.00 0.00 2.66
3992 8173 5.733373 GCTTGACTACCACTGAAAACCAAAG 60.733 44.000 0.00 0.00 0.00 2.77
3993 8174 4.097286 GCTTGACTACCACTGAAAACCAAA 59.903 41.667 0.00 0.00 0.00 3.28
3995 8176 3.211045 GCTTGACTACCACTGAAAACCA 58.789 45.455 0.00 0.00 0.00 3.67
3996 8177 3.003378 GTGCTTGACTACCACTGAAAACC 59.997 47.826 0.00 0.00 0.00 3.27
3997 8178 3.003378 GGTGCTTGACTACCACTGAAAAC 59.997 47.826 0.00 0.00 36.94 2.43
3998 8179 3.118038 AGGTGCTTGACTACCACTGAAAA 60.118 43.478 0.00 0.00 39.46 2.29
3999 8180 2.438021 AGGTGCTTGACTACCACTGAAA 59.562 45.455 0.00 0.00 39.46 2.69
4000 8181 2.037251 GAGGTGCTTGACTACCACTGAA 59.963 50.000 0.00 0.00 39.46 3.02
4001 8182 1.618837 GAGGTGCTTGACTACCACTGA 59.381 52.381 0.00 0.00 39.46 3.41
4003 8184 1.717032 TGAGGTGCTTGACTACCACT 58.283 50.000 0.00 0.00 39.46 4.00
4004 8185 2.543777 TTGAGGTGCTTGACTACCAC 57.456 50.000 0.00 0.00 39.46 4.16
4005 8186 2.438021 ACTTTGAGGTGCTTGACTACCA 59.562 45.455 0.00 0.00 39.46 3.25
4006 8187 3.127425 ACTTTGAGGTGCTTGACTACC 57.873 47.619 0.00 0.00 37.23 3.18
4007 8188 6.803154 ATTTACTTTGAGGTGCTTGACTAC 57.197 37.500 0.00 0.00 0.00 2.73
4008 8189 8.911918 TTTATTTACTTTGAGGTGCTTGACTA 57.088 30.769 0.00 0.00 0.00 2.59
4010 8191 8.135529 AGTTTTATTTACTTTGAGGTGCTTGAC 58.864 33.333 0.00 0.00 0.00 3.18
4011 8192 8.232913 AGTTTTATTTACTTTGAGGTGCTTGA 57.767 30.769 0.00 0.00 0.00 3.02
4012 8193 8.871686 AAGTTTTATTTACTTTGAGGTGCTTG 57.128 30.769 0.00 0.00 32.06 4.01
4076 9195 7.275560 GGCTGTGTTTGATAGCGAAATATTTTT 59.724 33.333 1.43 0.00 39.67 1.94
4079 9198 5.590259 AGGCTGTGTTTGATAGCGAAATATT 59.410 36.000 0.00 0.00 39.67 1.28
4087 9206 3.375299 CCACTTAGGCTGTGTTTGATAGC 59.625 47.826 0.00 0.00 38.07 2.97
4089 9208 4.634012 ACCACTTAGGCTGTGTTTGATA 57.366 40.909 0.00 0.00 43.14 2.15
4091 9210 3.290948 AACCACTTAGGCTGTGTTTGA 57.709 42.857 0.00 0.00 43.14 2.69
4093 9212 3.626930 TCAAACCACTTAGGCTGTGTTT 58.373 40.909 0.00 0.00 43.14 2.83
4094 9213 3.290948 TCAAACCACTTAGGCTGTGTT 57.709 42.857 0.00 0.00 43.14 3.32
4095 9214 2.949644 GTTCAAACCACTTAGGCTGTGT 59.050 45.455 0.00 0.00 43.14 3.72
4097 9216 2.218603 CGTTCAAACCACTTAGGCTGT 58.781 47.619 0.00 0.00 43.14 4.40
4098 9217 1.535462 CCGTTCAAACCACTTAGGCTG 59.465 52.381 0.00 0.00 43.14 4.85
4099 9218 1.544759 CCCGTTCAAACCACTTAGGCT 60.545 52.381 0.00 0.00 43.14 4.58
4100 9219 0.879090 CCCGTTCAAACCACTTAGGC 59.121 55.000 0.00 0.00 43.14 3.93
4104 9223 2.946990 CAACTACCCGTTCAAACCACTT 59.053 45.455 0.00 0.00 32.27 3.16
4105 9224 2.567985 CAACTACCCGTTCAAACCACT 58.432 47.619 0.00 0.00 32.27 4.00
4106 9225 1.605232 CCAACTACCCGTTCAAACCAC 59.395 52.381 0.00 0.00 32.27 4.16
4116 9235 1.835531 ACTCCCATTACCAACTACCCG 59.164 52.381 0.00 0.00 0.00 5.28
4132 9252 2.415512 CTGCTAGGTACGCAAAAACTCC 59.584 50.000 0.00 0.00 36.88 3.85
4142 9262 3.319405 ACTCCATGAATCTGCTAGGTACG 59.681 47.826 0.00 0.00 0.00 3.67
4170 9740 5.086888 GGTAACTAACGGAACAAACACTG 57.913 43.478 0.00 0.00 0.00 3.66
4189 9759 1.595311 TGGTACGGAGGGAGTAGGTA 58.405 55.000 0.00 0.00 0.00 3.08
4297 9867 9.463443 AAAAATTAGACAGTGCAAAGACATAAC 57.537 29.630 0.00 0.00 0.00 1.89
4363 11124 6.821031 ATATAACCAACGGTGTTGCTAAAA 57.179 33.333 0.00 0.00 35.34 1.52
4364 11125 6.821031 AATATAACCAACGGTGTTGCTAAA 57.179 33.333 0.00 0.00 35.34 1.85
4367 11128 4.521256 ACAAATATAACCAACGGTGTTGCT 59.479 37.500 0.00 0.00 35.34 3.91
4368 11129 4.800784 ACAAATATAACCAACGGTGTTGC 58.199 39.130 0.00 0.00 35.34 4.17
4380 11141 5.531287 CCTCACCCCTGCTTACAAATATAAC 59.469 44.000 0.00 0.00 0.00 1.89
4383 11144 3.785887 TCCTCACCCCTGCTTACAAATAT 59.214 43.478 0.00 0.00 0.00 1.28
4384 11145 3.054655 GTCCTCACCCCTGCTTACAAATA 60.055 47.826 0.00 0.00 0.00 1.40
4385 11146 1.992557 TCCTCACCCCTGCTTACAAAT 59.007 47.619 0.00 0.00 0.00 2.32
4386 11147 1.073284 GTCCTCACCCCTGCTTACAAA 59.927 52.381 0.00 0.00 0.00 2.83
4387 11148 0.690762 GTCCTCACCCCTGCTTACAA 59.309 55.000 0.00 0.00 0.00 2.41
4389 11150 0.250513 CTGTCCTCACCCCTGCTTAC 59.749 60.000 0.00 0.00 0.00 2.34
4390 11151 0.909610 CCTGTCCTCACCCCTGCTTA 60.910 60.000 0.00 0.00 0.00 3.09
4393 11154 3.721706 CCCTGTCCTCACCCCTGC 61.722 72.222 0.00 0.00 0.00 4.85
4394 11155 3.721706 GCCCTGTCCTCACCCCTG 61.722 72.222 0.00 0.00 0.00 4.45
4397 11158 4.083862 GACGCCCTGTCCTCACCC 62.084 72.222 0.00 0.00 42.04 4.61
4398 11159 4.436998 CGACGCCCTGTCCTCACC 62.437 72.222 0.00 0.00 45.23 4.02
4399 11160 3.371063 TCGACGCCCTGTCCTCAC 61.371 66.667 0.00 0.00 45.23 3.51
4400 11161 3.371063 GTCGACGCCCTGTCCTCA 61.371 66.667 0.00 0.00 45.23 3.86
4401 11162 4.131088 GGTCGACGCCCTGTCCTC 62.131 72.222 9.92 0.00 45.23 3.71
4436 14007 3.781605 GATGGGCTGGCAGCTACCC 62.782 68.421 35.73 28.35 41.99 3.69
4438 14009 2.203266 GGATGGGCTGGCAGCTAC 60.203 66.667 35.73 28.14 41.99 3.58
4440 14011 3.657038 CTTGGATGGGCTGGCAGCT 62.657 63.158 35.73 19.29 41.99 4.24
4441 14012 3.145551 CTTGGATGGGCTGGCAGC 61.146 66.667 30.93 30.93 41.46 5.25
4442 14013 1.304713 AACTTGGATGGGCTGGCAG 60.305 57.895 10.94 10.94 0.00 4.85
4444 14015 0.899717 TTGAACTTGGATGGGCTGGC 60.900 55.000 0.00 0.00 0.00 4.85
4445 14016 1.180029 CTTGAACTTGGATGGGCTGG 58.820 55.000 0.00 0.00 0.00 4.85
4447 14018 0.613012 GGCTTGAACTTGGATGGGCT 60.613 55.000 0.00 0.00 0.00 5.19
4448 14019 1.607801 GGGCTTGAACTTGGATGGGC 61.608 60.000 0.00 0.00 0.00 5.36
4449 14020 0.972471 GGGGCTTGAACTTGGATGGG 60.972 60.000 0.00 0.00 0.00 4.00
4451 14022 1.180029 CTGGGGCTTGAACTTGGATG 58.820 55.000 0.00 0.00 0.00 3.51
4452 14023 0.613012 GCTGGGGCTTGAACTTGGAT 60.613 55.000 0.00 0.00 35.22 3.41
4453 14024 1.228552 GCTGGGGCTTGAACTTGGA 60.229 57.895 0.00 0.00 35.22 3.53
4454 14025 3.369921 GCTGGGGCTTGAACTTGG 58.630 61.111 0.00 0.00 35.22 3.61
4464 14035 2.575461 GCATGTCAAAGCTGGGGC 59.425 61.111 0.00 0.00 39.06 5.80
4465 14036 2.703798 CCGCATGTCAAAGCTGGGG 61.704 63.158 0.00 0.00 36.77 4.96
4466 14037 1.973281 ACCGCATGTCAAAGCTGGG 60.973 57.895 0.00 5.37 0.00 4.45
4467 14038 1.210931 CACCGCATGTCAAAGCTGG 59.789 57.895 0.00 8.73 0.00 4.85
4468 14039 1.443194 GCACCGCATGTCAAAGCTG 60.443 57.895 0.00 0.00 0.00 4.24
4470 14041 1.154150 GAGCACCGCATGTCAAAGC 60.154 57.895 0.00 0.00 0.00 3.51
4471 14042 1.133253 CGAGCACCGCATGTCAAAG 59.867 57.895 0.00 0.00 0.00 2.77
4472 14043 3.252964 CGAGCACCGCATGTCAAA 58.747 55.556 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.