Multiple sequence alignment - TraesCS4B01G239200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G239200 chr4B 100.000 5156 0 0 509 5664 496421136 496426291 0.000000e+00 9522.0
1 TraesCS4B01G239200 chr4B 100.000 211 0 0 1 211 496420628 496420838 1.910000e-104 390.0
2 TraesCS4B01G239200 chr4B 100.000 29 0 0 1531 1559 467918585 467918557 3.000000e-03 54.7
3 TraesCS4B01G239200 chr4D 92.948 2113 78 22 563 2636 417806942 417809022 0.000000e+00 3011.0
4 TraesCS4B01G239200 chr4D 91.641 1974 119 28 809 2773 401366519 401368455 0.000000e+00 2689.0
5 TraesCS4B01G239200 chr4D 92.512 1429 64 17 3816 5234 401369925 401371320 0.000000e+00 2006.0
6 TraesCS4B01G239200 chr4D 91.898 1259 58 16 3816 5059 417810469 417811698 0.000000e+00 1720.0
7 TraesCS4B01G239200 chr4D 96.068 585 21 2 5056 5639 417811790 417812373 0.000000e+00 952.0
8 TraesCS4B01G239200 chr4D 88.482 764 49 16 2806 3555 401368554 401369292 0.000000e+00 887.0
9 TraesCS4B01G239200 chr4D 88.120 766 49 19 2806 3556 417809164 417809902 0.000000e+00 872.0
10 TraesCS4B01G239200 chr4D 98.347 121 2 0 2622 2742 417809038 417809158 4.450000e-51 213.0
11 TraesCS4B01G239200 chr4D 97.391 115 3 0 699 813 401361131 401361245 4.480000e-46 196.0
12 TraesCS4B01G239200 chr4D 95.833 48 1 1 509 555 417805208 417805255 6.090000e-10 76.8
13 TraesCS4B01G239200 chr4D 100.000 29 0 0 1531 1559 380464321 380464293 3.000000e-03 54.7
14 TraesCS4B01G239200 chr4A 92.792 1748 67 27 547 2273 59230403 59232112 0.000000e+00 2475.0
15 TraesCS4B01G239200 chr4A 91.179 1247 62 21 3816 5055 59234093 59235298 0.000000e+00 1650.0
16 TraesCS4B01G239200 chr4A 86.708 805 57 16 2788 3558 59232680 59233468 0.000000e+00 848.0
17 TraesCS4B01G239200 chr4A 87.926 323 27 9 5232 5546 59242552 59242870 2.490000e-98 370.0
18 TraesCS4B01G239200 chr4A 82.013 467 38 22 2276 2742 59232261 59232681 6.980000e-94 355.0
19 TraesCS4B01G239200 chr4A 95.109 184 9 0 5051 5234 59240938 59241121 2.000000e-74 291.0
20 TraesCS4B01G239200 chr4A 100.000 28 0 0 1532 1559 83316483 83316510 1.000000e-02 52.8
21 TraesCS4B01G239200 chr5B 96.887 771 22 2 2788 3558 687363549 687362781 0.000000e+00 1290.0
22 TraesCS4B01G239200 chr5B 96.239 771 28 1 2788 3558 683038547 683039316 0.000000e+00 1262.0
23 TraesCS4B01G239200 chr5B 93.220 590 30 7 3693 4272 687362388 687361799 0.000000e+00 859.0
24 TraesCS4B01G239200 chr5B 92.047 591 35 9 3693 4272 683039726 683040315 0.000000e+00 821.0
25 TraesCS4B01G239200 chr5B 97.590 83 2 0 2660 2742 683038466 683038548 5.920000e-30 143.0
26 TraesCS4B01G239200 chr5B 97.590 83 2 0 2660 2742 687363630 687363548 5.920000e-30 143.0
27 TraesCS4B01G239200 chr5B 92.453 53 1 2 2740 2789 457724129 457724181 7.870000e-09 73.1
28 TraesCS4B01G239200 chr5B 89.474 57 4 2 2734 2789 507061355 507061300 2.830000e-08 71.3
29 TraesCS4B01G239200 chr2B 95.775 781 32 1 2778 3558 240186248 240185469 0.000000e+00 1258.0
30 TraesCS4B01G239200 chr2B 91.201 591 40 8 3693 4272 240184860 240184271 0.000000e+00 793.0
31 TraesCS4B01G239200 chr2B 95.098 102 5 0 2660 2761 240186402 240186301 1.630000e-35 161.0
32 TraesCS4B01G239200 chr7B 95.606 569 23 2 2988 3556 604515372 604515938 0.000000e+00 911.0
33 TraesCS4B01G239200 chr7B 91.525 590 40 7 3693 4272 604516350 604516939 0.000000e+00 804.0
34 TraesCS4B01G239200 chr7B 84.856 416 47 8 1657 2071 612843297 612843697 6.830000e-109 405.0
35 TraesCS4B01G239200 chr7B 81.395 473 44 24 2239 2692 688016006 688016453 4.200000e-91 346.0
36 TraesCS4B01G239200 chr7B 96.392 194 7 0 2788 2981 604509949 604510142 2.550000e-83 320.0
37 TraesCS4B01G239200 chr7B 97.917 96 2 0 3610 3705 332818929 332818834 3.510000e-37 167.0
38 TraesCS4B01G239200 chr7B 91.150 113 8 2 3609 3720 624951733 624951844 9.830000e-33 152.0
39 TraesCS4B01G239200 chr7B 95.181 83 4 0 2660 2742 604509868 604509950 1.280000e-26 132.0
40 TraesCS4B01G239200 chr7B 92.727 55 1 1 2739 2790 745260628 745260574 6.090000e-10 76.8
41 TraesCS4B01G239200 chr7D 86.659 832 78 24 1876 2703 157760285 157761087 0.000000e+00 891.0
42 TraesCS4B01G239200 chr7D 87.692 65 5 3 2361 2422 157760671 157760735 7.870000e-09 73.1
43 TraesCS4B01G239200 chr6B 94.824 541 14 4 2788 3327 566644201 566643674 0.000000e+00 832.0
44 TraesCS4B01G239200 chr6B 86.945 383 39 5 1789 2169 279014173 279013800 2.440000e-113 420.0
45 TraesCS4B01G239200 chr6B 91.818 110 8 1 3592 3700 80083477 80083586 9.830000e-33 152.0
46 TraesCS4B01G239200 chr6B 95.181 83 4 0 2660 2742 566644282 566644200 1.280000e-26 132.0
47 TraesCS4B01G239200 chr6B 91.525 59 0 3 2737 2790 144007988 144008046 6.090000e-10 76.8
48 TraesCS4B01G239200 chr7A 87.307 323 28 10 5232 5546 499447851 499447534 1.940000e-94 357.0
49 TraesCS4B01G239200 chr7A 95.146 103 2 3 3612 3714 47050816 47050717 5.870000e-35 159.0
50 TraesCS4B01G239200 chr7A 92.453 53 0 1 2741 2789 720581873 720581821 7.870000e-09 73.1
51 TraesCS4B01G239200 chr5D 83.333 342 31 16 2239 2579 55335695 55335379 5.550000e-75 292.0
52 TraesCS4B01G239200 chr1D 82.991 341 32 16 2240 2579 23948904 23949219 9.290000e-73 285.0
53 TraesCS4B01G239200 chr1D 95.098 102 2 3 3596 3697 197821666 197821568 2.110000e-34 158.0
54 TraesCS4B01G239200 chr2D 82.749 342 33 16 2239 2579 8647072 8646756 1.200000e-71 281.0
55 TraesCS4B01G239200 chr6D 82.456 342 34 14 2239 2579 117041932 117042248 5.590000e-70 276.0
56 TraesCS4B01G239200 chr6D 92.727 55 2 2 2738 2790 454479338 454479284 1.690000e-10 78.7
57 TraesCS4B01G239200 chr6D 88.710 62 3 3 2737 2794 81756097 81756158 7.870000e-09 73.1
58 TraesCS4B01G239200 chr3B 96.939 98 3 0 3611 3708 770342976 770343073 1.260000e-36 165.0
59 TraesCS4B01G239200 chr3B 95.960 99 3 1 3599 3697 256530502 256530599 5.870000e-35 159.0
60 TraesCS4B01G239200 chr2A 92.727 110 7 1 3613 3721 34104429 34104320 2.110000e-34 158.0
61 TraesCS4B01G239200 chr1B 95.098 102 1 3 3596 3697 681293959 681293862 2.110000e-34 158.0
62 TraesCS4B01G239200 chrUn 89.474 57 4 2 2734 2789 466887382 466887437 2.830000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G239200 chr4B 496420628 496426291 5663 False 4956.000000 9522 100.000000 1 5664 2 chr4B.!!$F1 5663
1 TraesCS4B01G239200 chr4D 401366519 401371320 4801 False 1860.666667 2689 90.878333 809 5234 3 chr4D.!!$F2 4425
2 TraesCS4B01G239200 chr4D 417805208 417812373 7165 False 1140.800000 3011 93.869000 509 5639 6 chr4D.!!$F3 5130
3 TraesCS4B01G239200 chr4A 59230403 59235298 4895 False 1332.000000 2475 88.173000 547 5055 4 chr4A.!!$F2 4508
4 TraesCS4B01G239200 chr4A 59240938 59242870 1932 False 330.500000 370 91.517500 5051 5546 2 chr4A.!!$F3 495
5 TraesCS4B01G239200 chr5B 687361799 687363630 1831 True 764.000000 1290 95.899000 2660 4272 3 chr5B.!!$R2 1612
6 TraesCS4B01G239200 chr5B 683038466 683040315 1849 False 742.000000 1262 95.292000 2660 4272 3 chr5B.!!$F2 1612
7 TraesCS4B01G239200 chr2B 240184271 240186402 2131 True 737.333333 1258 94.024667 2660 4272 3 chr2B.!!$R1 1612
8 TraesCS4B01G239200 chr7B 604515372 604516939 1567 False 857.500000 911 93.565500 2988 4272 2 chr7B.!!$F5 1284
9 TraesCS4B01G239200 chr7D 157760285 157761087 802 False 482.050000 891 87.175500 1876 2703 2 chr7D.!!$F1 827
10 TraesCS4B01G239200 chr6B 566643674 566644282 608 True 482.000000 832 95.002500 2660 3327 2 chr6B.!!$R2 667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.181114 GGTGGCCTGACATGATGCTA 59.819 55.0 3.32 0.0 0.00 3.49 F
675 2356 0.325272 GGTCCTCTCCCCTCAACAAC 59.675 60.0 0.00 0.0 0.00 3.32 F
1533 3235 0.467290 CCTCCTCTTCCTCCTCCGAG 60.467 65.0 0.00 0.0 35.72 4.63 F
1957 3659 0.461548 TGGATCATCGAGGTCAGTGC 59.538 55.0 0.00 0.0 0.00 4.40 F
3331 5341 0.472471 GGTCCAAGTTCCAGTGTGGA 59.528 55.0 0.00 0.0 46.61 4.02 F
4501 7293 0.261991 ATCCCTCCCTCGCACTCTTA 59.738 55.0 0.00 0.0 0.00 2.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 3234 0.033894 GTCGTCTTCCTCCTCCTCCT 60.034 60.000 0.00 0.0 0.00 3.69 R
1668 3370 0.818040 GAACTGTGTGGAACCGGCTT 60.818 55.000 0.00 0.0 34.36 4.35 R
2694 4602 0.389426 AACACGGTGCCGACAGTATC 60.389 55.000 18.16 0.0 42.83 2.24 R
3769 6532 1.991813 TGGTGAATTGGTGATCCCAGA 59.008 47.619 3.55 0.0 46.31 3.86 R
4535 7327 0.755079 TCTGCACACTGTCAAGAGCT 59.245 50.000 0.00 0.0 0.00 4.09 R
5639 9975 0.601558 TTCAGTCGCCGCTATATCCC 59.398 55.000 0.00 0.0 0.00 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.123160 TGTCGTTCAAAATTTCGATGATACA 57.877 32.000 3.43 1.97 34.93 2.29
26 27 7.577107 TGTCGTTCAAAATTTCGATGATACAA 58.423 30.769 3.43 0.00 34.93 2.41
27 28 8.233868 TGTCGTTCAAAATTTCGATGATACAAT 58.766 29.630 3.43 0.00 34.93 2.71
28 29 9.697250 GTCGTTCAAAATTTCGATGATACAATA 57.303 29.630 3.43 0.00 34.93 1.90
54 55 9.515226 AACTTGTTTATCATGTTACACATACCT 57.485 29.630 4.12 0.00 40.83 3.08
55 56 9.162764 ACTTGTTTATCATGTTACACATACCTC 57.837 33.333 4.12 0.00 36.53 3.85
56 57 9.161629 CTTGTTTATCATGTTACACATACCTCA 57.838 33.333 4.12 0.00 36.53 3.86
57 58 8.716646 TGTTTATCATGTTACACATACCTCAG 57.283 34.615 0.00 0.00 36.53 3.35
58 59 7.768582 TGTTTATCATGTTACACATACCTCAGG 59.231 37.037 0.00 0.00 36.53 3.86
59 60 5.957771 ATCATGTTACACATACCTCAGGT 57.042 39.130 0.00 0.00 36.53 4.00
60 61 5.084818 TCATGTTACACATACCTCAGGTG 57.915 43.478 6.61 0.00 44.55 4.00
61 62 3.973206 TGTTACACATACCTCAGGTGG 57.027 47.619 6.61 0.42 43.29 4.61
62 63 2.027561 TGTTACACATACCTCAGGTGGC 60.028 50.000 6.61 0.00 43.29 5.01
63 64 1.200519 TACACATACCTCAGGTGGCC 58.799 55.000 6.61 0.00 43.29 5.36
64 65 0.547712 ACACATACCTCAGGTGGCCT 60.548 55.000 6.61 0.00 43.29 5.19
74 75 1.077212 AGGTGGCCTGACATGATGC 60.077 57.895 3.32 0.00 29.57 3.91
75 76 1.077212 GGTGGCCTGACATGATGCT 60.077 57.895 3.32 0.00 0.00 3.79
76 77 0.181114 GGTGGCCTGACATGATGCTA 59.819 55.000 3.32 0.00 0.00 3.49
77 78 1.590932 GTGGCCTGACATGATGCTAG 58.409 55.000 3.32 0.00 0.00 3.42
78 79 1.134280 GTGGCCTGACATGATGCTAGT 60.134 52.381 3.32 0.00 0.00 2.57
79 80 1.134310 TGGCCTGACATGATGCTAGTG 60.134 52.381 3.32 0.00 0.00 2.74
80 81 1.134280 GGCCTGACATGATGCTAGTGT 60.134 52.381 0.00 0.00 0.00 3.55
81 82 1.938577 GCCTGACATGATGCTAGTGTG 59.061 52.381 0.00 0.00 0.00 3.82
82 83 1.938577 CCTGACATGATGCTAGTGTGC 59.061 52.381 0.00 0.00 0.00 4.57
83 84 1.938577 CTGACATGATGCTAGTGTGCC 59.061 52.381 0.00 0.00 0.00 5.01
84 85 1.556451 TGACATGATGCTAGTGTGCCT 59.444 47.619 0.00 0.00 0.00 4.75
85 86 1.938577 GACATGATGCTAGTGTGCCTG 59.061 52.381 0.00 0.00 0.00 4.85
86 87 1.556451 ACATGATGCTAGTGTGCCTGA 59.444 47.619 0.00 0.00 0.00 3.86
87 88 1.938577 CATGATGCTAGTGTGCCTGAC 59.061 52.381 0.00 0.00 0.00 3.51
88 89 0.975887 TGATGCTAGTGTGCCTGACA 59.024 50.000 0.00 0.00 0.00 3.58
99 100 2.363788 TGCCTGACACAGTTATCGAC 57.636 50.000 0.00 0.00 0.00 4.20
100 101 1.616374 TGCCTGACACAGTTATCGACA 59.384 47.619 0.00 0.00 0.00 4.35
101 102 2.036604 TGCCTGACACAGTTATCGACAA 59.963 45.455 0.00 0.00 0.00 3.18
102 103 2.412089 GCCTGACACAGTTATCGACAAC 59.588 50.000 0.00 0.00 0.00 3.32
103 104 3.649073 CCTGACACAGTTATCGACAACA 58.351 45.455 9.59 0.00 0.00 3.33
104 105 4.055360 CCTGACACAGTTATCGACAACAA 58.945 43.478 9.59 0.00 0.00 2.83
105 106 4.084537 CCTGACACAGTTATCGACAACAAC 60.085 45.833 9.59 1.40 0.00 3.32
106 107 4.434520 TGACACAGTTATCGACAACAACA 58.565 39.130 9.59 0.00 0.00 3.33
107 108 4.506288 TGACACAGTTATCGACAACAACAG 59.494 41.667 9.59 1.25 0.00 3.16
108 109 4.689071 ACACAGTTATCGACAACAACAGA 58.311 39.130 9.59 0.00 0.00 3.41
109 110 5.113383 ACACAGTTATCGACAACAACAGAA 58.887 37.500 9.59 0.00 0.00 3.02
110 111 5.758296 ACACAGTTATCGACAACAACAGAAT 59.242 36.000 9.59 0.00 0.00 2.40
111 112 6.926826 ACACAGTTATCGACAACAACAGAATA 59.073 34.615 9.59 0.00 0.00 1.75
112 113 7.602644 ACACAGTTATCGACAACAACAGAATAT 59.397 33.333 9.59 0.00 0.00 1.28
113 114 8.443160 CACAGTTATCGACAACAACAGAATATT 58.557 33.333 9.59 0.00 0.00 1.28
114 115 8.999431 ACAGTTATCGACAACAACAGAATATTT 58.001 29.630 9.59 0.00 0.00 1.40
115 116 9.265938 CAGTTATCGACAACAACAGAATATTTG 57.734 33.333 9.59 0.00 0.00 2.32
116 117 8.999431 AGTTATCGACAACAACAGAATATTTGT 58.001 29.630 9.59 0.00 37.55 2.83
117 118 9.051027 GTTATCGACAACAACAGAATATTTGTG 57.949 33.333 0.71 0.00 36.08 3.33
118 119 6.852858 TCGACAACAACAGAATATTTGTGA 57.147 33.333 5.91 0.00 36.08 3.58
119 120 6.655062 TCGACAACAACAGAATATTTGTGAC 58.345 36.000 5.91 0.00 36.08 3.67
120 121 6.481976 TCGACAACAACAGAATATTTGTGACT 59.518 34.615 5.91 0.00 36.08 3.41
121 122 6.574832 CGACAACAACAGAATATTTGTGACTG 59.425 38.462 5.91 0.00 36.08 3.51
122 123 6.738114 ACAACAACAGAATATTTGTGACTGG 58.262 36.000 5.91 0.00 36.08 4.00
123 124 6.321181 ACAACAACAGAATATTTGTGACTGGT 59.679 34.615 5.91 0.00 36.08 4.00
125 126 6.317789 CAACAGAATATTTGTGACTGGTGT 57.682 37.500 9.80 0.00 40.16 4.16
126 127 7.433708 CAACAGAATATTTGTGACTGGTGTA 57.566 36.000 9.80 0.00 40.16 2.90
127 128 8.044060 CAACAGAATATTTGTGACTGGTGTAT 57.956 34.615 9.80 0.00 40.16 2.29
128 129 9.161629 CAACAGAATATTTGTGACTGGTGTATA 57.838 33.333 9.80 0.00 40.16 1.47
129 130 9.733556 AACAGAATATTTGTGACTGGTGTATAA 57.266 29.630 5.91 0.00 33.57 0.98
130 131 9.905713 ACAGAATATTTGTGACTGGTGTATAAT 57.094 29.630 5.91 0.00 33.57 1.28
137 138 7.940178 TTGTGACTGGTGTATAATATTAGCG 57.060 36.000 1.02 0.00 0.00 4.26
138 139 6.452242 TGTGACTGGTGTATAATATTAGCGG 58.548 40.000 1.02 0.00 0.00 5.52
139 140 5.347907 GTGACTGGTGTATAATATTAGCGGC 59.652 44.000 1.02 0.00 0.00 6.53
140 141 4.491676 ACTGGTGTATAATATTAGCGGCG 58.508 43.478 0.51 0.51 0.00 6.46
141 142 4.219070 ACTGGTGTATAATATTAGCGGCGA 59.781 41.667 12.98 0.00 0.00 5.54
142 143 4.487948 TGGTGTATAATATTAGCGGCGAC 58.512 43.478 12.98 1.23 0.00 5.19
143 144 4.022155 TGGTGTATAATATTAGCGGCGACA 60.022 41.667 12.98 0.00 0.00 4.35
144 145 4.925054 GGTGTATAATATTAGCGGCGACAA 59.075 41.667 12.98 3.03 0.00 3.18
145 146 5.164022 GGTGTATAATATTAGCGGCGACAAC 60.164 44.000 12.98 0.00 0.00 3.32
146 147 4.618067 TGTATAATATTAGCGGCGACAACG 59.382 41.667 12.98 0.00 42.93 4.10
147 148 2.212869 AATATTAGCGGCGACAACGA 57.787 45.000 12.98 0.00 42.66 3.85
148 149 2.433868 ATATTAGCGGCGACAACGAT 57.566 45.000 12.98 0.00 42.66 3.73
149 150 1.483316 TATTAGCGGCGACAACGATG 58.517 50.000 12.98 0.00 42.66 3.84
150 151 0.459585 ATTAGCGGCGACAACGATGT 60.460 50.000 12.98 0.00 44.25 3.06
151 152 1.348538 TTAGCGGCGACAACGATGTG 61.349 55.000 12.98 0.00 40.74 3.21
152 153 2.202703 TAGCGGCGACAACGATGTGA 62.203 55.000 12.98 0.00 40.74 3.58
153 154 3.071459 GCGGCGACAACGATGTGAG 62.071 63.158 12.98 0.00 40.74 3.51
154 155 1.733041 CGGCGACAACGATGTGAGT 60.733 57.895 1.86 0.00 40.74 3.41
155 156 0.455464 CGGCGACAACGATGTGAGTA 60.455 55.000 1.86 0.00 40.74 2.59
156 157 1.797713 CGGCGACAACGATGTGAGTAT 60.798 52.381 1.86 0.00 40.74 2.12
157 158 1.852895 GGCGACAACGATGTGAGTATC 59.147 52.381 1.86 0.00 40.74 2.24
165 166 3.001395 CGATGTGAGTATCGGAAGGAC 57.999 52.381 0.00 0.00 44.56 3.85
166 167 2.357952 CGATGTGAGTATCGGAAGGACA 59.642 50.000 0.00 0.00 44.56 4.02
167 168 3.004839 CGATGTGAGTATCGGAAGGACAT 59.995 47.826 0.00 0.00 44.56 3.06
168 169 3.801114 TGTGAGTATCGGAAGGACATG 57.199 47.619 0.00 0.00 38.61 3.21
169 170 3.096852 TGTGAGTATCGGAAGGACATGT 58.903 45.455 0.00 0.00 38.61 3.21
170 171 3.130516 TGTGAGTATCGGAAGGACATGTC 59.869 47.826 17.91 17.91 38.61 3.06
171 172 2.693591 TGAGTATCGGAAGGACATGTCC 59.306 50.000 33.72 33.72 44.64 4.02
179 180 3.578456 GGACATGTCCGGCAAGTG 58.422 61.111 28.52 5.09 40.36 3.16
180 181 2.690778 GGACATGTCCGGCAAGTGC 61.691 63.158 28.52 9.89 40.36 4.40
200 201 4.812476 CGCGGGCCGAATGAGTGA 62.812 66.667 33.44 0.00 40.02 3.41
201 202 3.195698 GCGGGCCGAATGAGTGAC 61.196 66.667 33.44 4.02 0.00 3.67
202 203 2.885644 CGGGCCGAATGAGTGACG 60.886 66.667 24.41 0.00 0.00 4.35
203 204 2.577059 GGGCCGAATGAGTGACGA 59.423 61.111 0.00 0.00 0.00 4.20
204 205 1.810030 GGGCCGAATGAGTGACGAC 60.810 63.158 0.00 0.00 0.00 4.34
205 206 1.215647 GGCCGAATGAGTGACGACT 59.784 57.895 0.00 0.00 33.98 4.18
561 2241 2.878743 CGCTAATCCTGAGACAGCG 58.121 57.895 0.00 0.00 45.15 5.18
582 2262 2.047274 CATTCCCACGGACGCACT 60.047 61.111 0.00 0.00 0.00 4.40
608 2288 2.982744 GCAGCCGCCTTCTGTTTCC 61.983 63.158 0.00 0.00 34.21 3.13
636 2316 1.586422 CGGGATCGTTCGTAGTAGGA 58.414 55.000 0.00 0.00 0.00 2.94
637 2317 1.530293 CGGGATCGTTCGTAGTAGGAG 59.470 57.143 0.00 0.00 0.00 3.69
638 2318 2.570135 GGGATCGTTCGTAGTAGGAGT 58.430 52.381 0.00 0.00 0.00 3.85
639 2319 3.733337 GGGATCGTTCGTAGTAGGAGTA 58.267 50.000 0.00 0.00 0.00 2.59
651 2331 7.038659 TCGTAGTAGGAGTACAGTTCTAGAAC 58.961 42.308 25.24 25.24 41.45 3.01
672 2352 1.229529 TGGGTCCTCTCCCCTCAAC 60.230 63.158 0.00 0.00 46.48 3.18
675 2356 0.325272 GGTCCTCTCCCCTCAACAAC 59.675 60.000 0.00 0.00 0.00 3.32
678 2359 1.420138 TCCTCTCCCCTCAACAACAAC 59.580 52.381 0.00 0.00 0.00 3.32
683 2364 4.090090 TCTCCCCTCAACAACAACAAAAA 58.910 39.130 0.00 0.00 0.00 1.94
932 2623 5.932303 GCTATATAACCGAGCCAAATCAGAA 59.068 40.000 0.00 0.00 0.00 3.02
947 2638 0.535335 CAGAAAGCACCTAGCCGGTA 59.465 55.000 1.90 0.00 46.94 4.02
948 2639 0.824759 AGAAAGCACCTAGCCGGTAG 59.175 55.000 1.90 3.63 46.94 3.18
949 2640 0.810426 GAAAGCACCTAGCCGGTAGC 60.810 60.000 1.90 0.00 46.94 3.58
950 2641 2.253403 AAAGCACCTAGCCGGTAGCC 62.253 60.000 1.90 0.00 46.94 3.93
951 2642 3.467226 GCACCTAGCCGGTAGCCA 61.467 66.667 1.90 0.00 46.94 4.75
952 2643 2.499685 CACCTAGCCGGTAGCCAC 59.500 66.667 1.90 0.00 46.94 5.01
953 2644 2.038329 ACCTAGCCGGTAGCCACA 59.962 61.111 1.90 0.00 46.73 4.17
954 2645 2.356780 ACCTAGCCGGTAGCCACAC 61.357 63.158 1.90 0.00 46.73 3.82
955 2646 2.355986 CCTAGCCGGTAGCCACACA 61.356 63.158 1.90 0.00 45.47 3.72
956 2647 1.153628 CTAGCCGGTAGCCACACAC 60.154 63.158 1.90 0.00 45.47 3.82
957 2648 1.884075 CTAGCCGGTAGCCACACACA 61.884 60.000 1.90 0.00 45.47 3.72
958 2649 2.162338 TAGCCGGTAGCCACACACAC 62.162 60.000 1.90 0.00 45.47 3.82
959 2650 2.423874 CCGGTAGCCACACACACA 59.576 61.111 0.00 0.00 0.00 3.72
960 2651 1.959226 CCGGTAGCCACACACACAC 60.959 63.158 0.00 0.00 0.00 3.82
961 2652 1.227409 CGGTAGCCACACACACACA 60.227 57.895 0.00 0.00 0.00 3.72
962 2653 1.495584 CGGTAGCCACACACACACAC 61.496 60.000 0.00 0.00 0.00 3.82
963 2654 1.495584 GGTAGCCACACACACACACG 61.496 60.000 0.00 0.00 0.00 4.49
964 2655 1.885388 TAGCCACACACACACACGC 60.885 57.895 0.00 0.00 0.00 5.34
965 2656 2.579684 TAGCCACACACACACACGCA 62.580 55.000 0.00 0.00 0.00 5.24
966 2657 2.403186 CCACACACACACACGCAC 59.597 61.111 0.00 0.00 0.00 5.34
967 2658 2.394563 CCACACACACACACGCACA 61.395 57.895 0.00 0.00 0.00 4.57
968 2659 1.225991 CACACACACACACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
1088 2781 2.442272 GGCTACTCCGCTCCCAGA 60.442 66.667 0.00 0.00 0.00 3.86
1359 3061 3.522731 CTCCGCTCCGTCCTCCAG 61.523 72.222 0.00 0.00 0.00 3.86
1531 3233 1.040339 CACCTCCTCTTCCTCCTCCG 61.040 65.000 0.00 0.00 0.00 4.63
1532 3234 1.215679 ACCTCCTCTTCCTCCTCCGA 61.216 60.000 0.00 0.00 0.00 4.55
1533 3235 0.467290 CCTCCTCTTCCTCCTCCGAG 60.467 65.000 0.00 0.00 35.72 4.63
1545 3247 3.851565 TCCGAGGAGGAGGAGGAA 58.148 61.111 0.00 0.00 45.98 3.36
1668 3370 1.075525 CGTCCCCATCCCAGAGGTA 60.076 63.158 0.00 0.00 0.00 3.08
1681 3383 0.834687 AGAGGTAAGCCGGTTCCACA 60.835 55.000 1.90 0.00 40.50 4.17
1691 3393 0.602905 CGGTTCCACACAGTTCCTCC 60.603 60.000 0.00 0.00 0.00 4.30
1696 3398 3.764237 TCCACACAGTTCCTCCTAAAC 57.236 47.619 0.00 0.00 0.00 2.01
1957 3659 0.461548 TGGATCATCGAGGTCAGTGC 59.538 55.000 0.00 0.00 0.00 4.40
1990 3692 5.460419 GCTGTACTCTGCATTCTACATGTAC 59.540 44.000 0.08 0.00 38.20 2.90
1991 3693 6.681616 GCTGTACTCTGCATTCTACATGTACT 60.682 42.308 0.08 0.00 38.20 2.73
2025 3727 9.137459 TCCACTTTAGTTCAATTCCAATTTGTA 57.863 29.630 0.00 0.00 0.00 2.41
2048 3750 2.622436 ACAAGCTCGCCTTACAGATTC 58.378 47.619 0.00 0.00 31.00 2.52
2064 3767 3.822735 CAGATTCACAGTCATGGTTGGTT 59.177 43.478 0.00 0.00 0.00 3.67
2073 3776 2.100584 GTCATGGTTGGTTTTGTGCTGA 59.899 45.455 0.00 0.00 0.00 4.26
2078 3781 6.435591 TCATGGTTGGTTTTGTGCTGATAATA 59.564 34.615 0.00 0.00 0.00 0.98
2084 3787 7.026631 TGGTTTTGTGCTGATAATATACTGC 57.973 36.000 0.00 0.00 0.00 4.40
2093 3796 5.346281 GCTGATAATATACTGCGAAGTCACC 59.654 44.000 0.00 0.00 0.00 4.02
2095 3798 7.575155 GCTGATAATATACTGCGAAGTCACCTA 60.575 40.741 0.00 0.00 0.00 3.08
2112 3815 5.357314 GTCACCTAGTACTGCAGATTCAGTA 59.643 44.000 23.35 8.47 44.77 2.74
2124 3827 8.100791 ACTGCAGATTCAGTATTGGTTTAGTTA 58.899 33.333 23.35 0.00 44.77 2.24
2310 4171 5.174395 AGTAGATTGCTCACAGACATTGTC 58.826 41.667 8.82 8.82 38.16 3.18
2579 4457 6.713903 CAGGATACCAGCATCATTTCTATGTT 59.286 38.462 0.00 0.00 32.52 2.71
2694 4602 5.467035 AAGACTTGAGAGAACTTCTGAGG 57.533 43.478 0.00 0.00 35.87 3.86
2761 4669 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2767 4675 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2768 4676 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2772 4759 5.127031 CCGTTCCAAAATAGATGACCCATTT 59.873 40.000 0.00 0.00 0.00 2.32
2774 4761 7.147983 CCGTTCCAAAATAGATGACCCATTTTA 60.148 37.037 0.00 0.00 32.18 1.52
2856 4843 7.009179 ACTATGAGGATTTGACTGTTCTCAA 57.991 36.000 0.00 0.00 35.33 3.02
3237 5235 1.710013 ACGTCTGTTCGCTGTTATGG 58.290 50.000 0.00 0.00 0.00 2.74
3307 5305 5.239525 GCCTCAGATAAACGCATCCTTTTAT 59.760 40.000 0.00 0.00 30.69 1.40
3331 5341 0.472471 GGTCCAAGTTCCAGTGTGGA 59.528 55.000 0.00 0.00 46.61 4.02
3558 5582 7.770433 TGTGATAATAGCTCATATACAATGGCC 59.230 37.037 0.00 0.00 0.00 5.36
3561 5585 3.862877 AGCTCATATACAATGGCCACA 57.137 42.857 8.16 0.00 0.00 4.17
3571 6326 3.087031 ACAATGGCCACATCTGAAGAAG 58.913 45.455 8.16 0.00 35.94 2.85
3574 6329 3.063510 TGGCCACATCTGAAGAAGAAG 57.936 47.619 0.00 0.00 38.79 2.85
3610 6371 7.117667 CACACAGTACTATGCATAAACAACAGA 59.882 37.037 16.94 0.00 0.00 3.41
3611 6372 7.331934 ACACAGTACTATGCATAAACAACAGAG 59.668 37.037 16.94 4.24 0.00 3.35
3612 6373 7.331934 CACAGTACTATGCATAAACAACAGAGT 59.668 37.037 16.94 9.15 39.12 3.24
3613 6374 8.528643 ACAGTACTATGCATAAACAACAGAGTA 58.471 33.333 16.94 8.33 37.14 2.59
3617 6378 7.042335 ACTATGCATAAACAACAGAGTACTCC 58.958 38.462 19.38 1.81 34.32 3.85
3618 6379 4.575885 TGCATAAACAACAGAGTACTCCC 58.424 43.478 19.38 0.00 0.00 4.30
3619 6380 4.286032 TGCATAAACAACAGAGTACTCCCT 59.714 41.667 19.38 1.50 0.00 4.20
3620 6381 4.870991 GCATAAACAACAGAGTACTCCCTC 59.129 45.833 19.38 0.00 0.00 4.30
3621 6382 5.337652 GCATAAACAACAGAGTACTCCCTCT 60.338 44.000 19.38 0.00 42.55 3.69
3639 6400 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
3640 6401 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
3641 6402 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
3642 6403 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
3643 6404 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
3688 6449 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
3689 6450 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
3690 6451 8.571461 AAACGCTCTTATATTAGTTTACGGAG 57.429 34.615 0.00 0.00 31.14 4.63
3691 6452 6.675987 ACGCTCTTATATTAGTTTACGGAGG 58.324 40.000 0.00 0.00 0.00 4.30
3769 6532 6.425210 TGCACTGCAGTATCCTTATTATCT 57.575 37.500 21.20 0.00 33.32 1.98
3803 6566 1.890876 TCACCATTTGTTCCCTCGTG 58.109 50.000 0.00 0.00 0.00 4.35
3806 6569 2.360801 CACCATTTGTTCCCTCGTGTTT 59.639 45.455 0.00 0.00 0.00 2.83
3809 6572 4.217550 ACCATTTGTTCCCTCGTGTTTATG 59.782 41.667 0.00 0.00 0.00 1.90
3810 6573 4.217550 CCATTTGTTCCCTCGTGTTTATGT 59.782 41.667 0.00 0.00 0.00 2.29
3811 6574 5.413213 CCATTTGTTCCCTCGTGTTTATGTA 59.587 40.000 0.00 0.00 0.00 2.29
3814 6577 6.489127 TTGTTCCCTCGTGTTTATGTATTG 57.511 37.500 0.00 0.00 0.00 1.90
3845 6618 5.886609 TCACCATTTGTTCCCTCATCTTTA 58.113 37.500 0.00 0.00 0.00 1.85
3861 6634 6.824553 TCATCTTTATCTCCATTCAGGACAG 58.175 40.000 0.00 0.00 43.07 3.51
3862 6635 5.028549 TCTTTATCTCCATTCAGGACAGC 57.971 43.478 0.00 0.00 43.07 4.40
3914 6687 3.756069 GCATCATGCAGAAGTCTTTCAC 58.244 45.455 4.20 0.00 44.26 3.18
3984 6757 2.957312 GCTGGTTCAGGAGGTCCTAGAT 60.957 54.545 0.00 0.00 46.65 1.98
4232 7006 2.283388 TACTGGCCCTCGACCGTT 60.283 61.111 0.00 0.00 0.00 4.44
4318 7092 3.942829 TGGAGGTAAATGCTCTGAACTG 58.057 45.455 0.00 0.00 0.00 3.16
4319 7093 3.582647 TGGAGGTAAATGCTCTGAACTGA 59.417 43.478 0.00 0.00 0.00 3.41
4392 7172 1.328680 TCGATAAGACGTACTGACCGC 59.671 52.381 0.00 0.00 34.70 5.68
4393 7173 1.329906 CGATAAGACGTACTGACCGCT 59.670 52.381 0.00 0.00 0.00 5.52
4394 7174 2.223203 CGATAAGACGTACTGACCGCTT 60.223 50.000 0.00 0.00 0.00 4.68
4395 7175 3.730061 CGATAAGACGTACTGACCGCTTT 60.730 47.826 0.00 0.00 0.00 3.51
4409 7197 1.082104 GCTTTGAAACGCCTGACCG 60.082 57.895 0.00 0.00 0.00 4.79
4418 7206 3.435186 GCCTGACCGCTTTGCTCC 61.435 66.667 0.00 0.00 0.00 4.70
4455 7243 4.631773 TCGAGGACGAAGGACGAT 57.368 55.556 0.00 0.00 45.74 3.73
4496 7288 2.423898 TTCGATCCCTCCCTCGCAC 61.424 63.158 0.00 0.00 34.94 5.34
4497 7289 2.835431 CGATCCCTCCCTCGCACT 60.835 66.667 0.00 0.00 0.00 4.40
4501 7293 0.261991 ATCCCTCCCTCGCACTCTTA 59.738 55.000 0.00 0.00 0.00 2.10
4523 7315 2.507484 TCTTGGCACCATGAACTGAAG 58.493 47.619 2.93 0.00 0.00 3.02
4524 7316 2.158623 TCTTGGCACCATGAACTGAAGT 60.159 45.455 2.93 0.00 0.00 3.01
4525 7317 2.363306 TGGCACCATGAACTGAAGTT 57.637 45.000 0.00 0.00 41.64 2.66
4535 7327 5.991606 CCATGAACTGAAGTTACTGAACTGA 59.008 40.000 0.00 0.00 45.50 3.41
4573 7365 5.119588 TGCAGAAACTTATGTACGTAACTGC 59.880 40.000 26.20 26.20 39.96 4.40
4827 7619 3.985019 TGTTTATCGCTGTAAAGGGGA 57.015 42.857 0.00 0.00 0.00 4.81
4867 7662 5.376854 TTTCGTACTGAGGTGGTAACTAC 57.623 43.478 0.00 0.00 37.61 2.73
4905 7700 4.601019 CTGTTGTGGTCATGTGTCTTTTC 58.399 43.478 0.00 0.00 0.00 2.29
4973 7768 3.596214 TGTATTCCTCGACTGCCTTTTC 58.404 45.455 0.00 0.00 0.00 2.29
5028 7825 4.024809 GGATCTACGGCTCAGTAAAAATGC 60.025 45.833 0.00 0.00 0.00 3.56
5088 7980 3.321682 CCAGGTTATGGTTGCCATTATGG 59.678 47.826 6.92 6.92 42.23 2.74
5119 8013 2.656560 CGAAGGTCTCGGATTTCAGT 57.343 50.000 0.00 0.00 44.20 3.41
5169 8066 6.108687 TCAAGCAGATGTGTATGTCTTAAGG 58.891 40.000 1.85 0.00 0.00 2.69
5333 9669 6.222389 CCAAAAACTTCATCAAGCAACCATA 58.778 36.000 0.00 0.00 32.09 2.74
5337 9673 3.441572 ACTTCATCAAGCAACCATAGCAC 59.558 43.478 0.00 0.00 32.09 4.40
5396 9732 2.679934 CGTGCGCCATCTCTGCAAA 61.680 57.895 4.18 0.00 40.83 3.68
5546 9882 2.363359 GACCATCTCCAAAATGATGCCC 59.637 50.000 0.00 0.00 38.84 5.36
5551 9887 1.907936 CTCCAAAATGATGCCCCCAAA 59.092 47.619 0.00 0.00 0.00 3.28
5597 9933 1.134729 TCGTATGCCCCGGAAAACTAC 60.135 52.381 0.73 0.00 0.00 2.73
5623 9959 2.971430 GGAAAAACCTTCAGCGAGAC 57.029 50.000 0.00 0.00 35.41 3.36
5648 9984 6.952773 AGAGATATTCTCACGGGATATAGC 57.047 41.667 7.24 0.00 45.73 2.97
5649 9985 5.529430 AGAGATATTCTCACGGGATATAGCG 59.471 44.000 7.24 0.00 45.73 4.26
5650 9986 4.580995 AGATATTCTCACGGGATATAGCGG 59.419 45.833 0.00 0.00 0.00 5.52
5651 9987 0.601558 TTCTCACGGGATATAGCGGC 59.398 55.000 0.00 0.00 0.00 6.53
5652 9988 1.154016 CTCACGGGATATAGCGGCG 60.154 63.158 0.51 0.51 0.00 6.46
5653 9989 1.583495 CTCACGGGATATAGCGGCGA 61.583 60.000 12.98 0.00 0.00 5.54
5654 9990 1.443872 CACGGGATATAGCGGCGAC 60.444 63.158 12.98 1.23 0.00 5.19
5655 9991 1.602888 ACGGGATATAGCGGCGACT 60.603 57.895 12.98 10.32 0.00 4.18
5656 9992 1.154016 CGGGATATAGCGGCGACTG 60.154 63.158 12.98 0.00 0.00 3.51
5657 9993 1.583495 CGGGATATAGCGGCGACTGA 61.583 60.000 12.98 0.63 0.00 3.41
5658 9994 0.601558 GGGATATAGCGGCGACTGAA 59.398 55.000 12.98 0.52 0.00 3.02
5659 9995 1.000506 GGGATATAGCGGCGACTGAAA 59.999 52.381 12.98 0.00 0.00 2.69
5660 9996 2.547218 GGGATATAGCGGCGACTGAAAA 60.547 50.000 12.98 0.00 0.00 2.29
5661 9997 3.326747 GGATATAGCGGCGACTGAAAAT 58.673 45.455 12.98 0.39 0.00 1.82
5662 9998 3.746492 GGATATAGCGGCGACTGAAAATT 59.254 43.478 12.98 0.00 0.00 1.82
5663 9999 4.213482 GGATATAGCGGCGACTGAAAATTT 59.787 41.667 12.98 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 8.601243 ATTGTATCATCGAAATTTTGAACGAC 57.399 30.769 12.14 8.62 37.58 4.34
41 42 2.027561 GCCACCTGAGGTATGTGTAACA 60.028 50.000 2.59 0.00 43.82 2.41
42 43 2.629051 GCCACCTGAGGTATGTGTAAC 58.371 52.381 2.59 0.00 32.11 2.50
43 44 1.557832 GGCCACCTGAGGTATGTGTAA 59.442 52.381 2.59 0.00 32.11 2.41
44 45 1.200519 GGCCACCTGAGGTATGTGTA 58.799 55.000 2.59 0.00 32.11 2.90
45 46 0.547712 AGGCCACCTGAGGTATGTGT 60.548 55.000 2.59 0.00 32.11 3.72
46 47 2.300996 AGGCCACCTGAGGTATGTG 58.699 57.895 2.59 0.00 32.11 3.21
47 48 4.919770 AGGCCACCTGAGGTATGT 57.080 55.556 2.59 0.00 32.11 2.29
56 57 1.077212 GCATCATGTCAGGCCACCT 60.077 57.895 5.01 0.00 0.00 4.00
57 58 0.181114 TAGCATCATGTCAGGCCACC 59.819 55.000 5.01 0.00 0.00 4.61
58 59 1.134280 ACTAGCATCATGTCAGGCCAC 60.134 52.381 5.01 0.00 0.00 5.01
59 60 1.134310 CACTAGCATCATGTCAGGCCA 60.134 52.381 5.01 0.00 0.00 5.36
60 61 1.134280 ACACTAGCATCATGTCAGGCC 60.134 52.381 0.00 0.00 0.00 5.19
61 62 1.938577 CACACTAGCATCATGTCAGGC 59.061 52.381 0.00 0.00 0.00 4.85
62 63 1.938577 GCACACTAGCATCATGTCAGG 59.061 52.381 0.00 0.00 0.00 3.86
63 64 1.938577 GGCACACTAGCATCATGTCAG 59.061 52.381 0.00 0.00 35.83 3.51
64 65 1.556451 AGGCACACTAGCATCATGTCA 59.444 47.619 0.00 0.00 35.83 3.58
65 66 1.938577 CAGGCACACTAGCATCATGTC 59.061 52.381 0.00 0.00 35.83 3.06
66 67 1.556451 TCAGGCACACTAGCATCATGT 59.444 47.619 0.00 0.00 35.83 3.21
67 68 1.938577 GTCAGGCACACTAGCATCATG 59.061 52.381 0.00 0.00 35.83 3.07
68 69 1.556451 TGTCAGGCACACTAGCATCAT 59.444 47.619 0.00 0.00 35.83 2.45
69 70 0.975887 TGTCAGGCACACTAGCATCA 59.024 50.000 0.00 0.00 35.83 3.07
70 71 3.840831 TGTCAGGCACACTAGCATC 57.159 52.632 0.00 0.00 35.83 3.91
80 81 1.616374 TGTCGATAACTGTGTCAGGCA 59.384 47.619 0.00 0.00 35.51 4.75
81 82 2.363788 TGTCGATAACTGTGTCAGGC 57.636 50.000 0.00 0.00 35.51 4.85
82 83 3.649073 TGTTGTCGATAACTGTGTCAGG 58.351 45.455 23.09 0.00 35.51 3.86
83 84 4.506288 TGTTGTTGTCGATAACTGTGTCAG 59.494 41.667 23.09 0.00 37.52 3.51
84 85 4.434520 TGTTGTTGTCGATAACTGTGTCA 58.565 39.130 23.09 12.85 31.31 3.58
85 86 4.743151 TCTGTTGTTGTCGATAACTGTGTC 59.257 41.667 23.09 10.91 32.59 3.67
86 87 4.689071 TCTGTTGTTGTCGATAACTGTGT 58.311 39.130 23.09 0.00 32.59 3.72
87 88 5.651172 TTCTGTTGTTGTCGATAACTGTG 57.349 39.130 23.09 12.15 32.59 3.66
88 89 8.547967 AATATTCTGTTGTTGTCGATAACTGT 57.452 30.769 23.09 6.60 32.59 3.55
89 90 9.265938 CAAATATTCTGTTGTTGTCGATAACTG 57.734 33.333 23.09 13.39 31.31 3.16
90 91 8.999431 ACAAATATTCTGTTGTTGTCGATAACT 58.001 29.630 23.09 6.32 34.29 2.24
91 92 9.051027 CACAAATATTCTGTTGTTGTCGATAAC 57.949 33.333 17.19 17.19 35.81 1.89
92 93 8.994170 TCACAAATATTCTGTTGTTGTCGATAA 58.006 29.630 0.00 0.00 35.81 1.75
93 94 8.440059 GTCACAAATATTCTGTTGTTGTCGATA 58.560 33.333 0.00 0.00 35.81 2.92
94 95 7.173218 AGTCACAAATATTCTGTTGTTGTCGAT 59.827 33.333 0.00 0.00 35.81 3.59
95 96 6.481976 AGTCACAAATATTCTGTTGTTGTCGA 59.518 34.615 0.00 0.00 35.81 4.20
96 97 6.574832 CAGTCACAAATATTCTGTTGTTGTCG 59.425 38.462 0.00 0.00 35.81 4.35
97 98 6.857964 CCAGTCACAAATATTCTGTTGTTGTC 59.142 38.462 0.00 0.00 35.81 3.18
98 99 6.321181 ACCAGTCACAAATATTCTGTTGTTGT 59.679 34.615 0.00 0.00 35.81 3.32
99 100 6.638063 CACCAGTCACAAATATTCTGTTGTTG 59.362 38.462 0.00 0.00 35.81 3.33
100 101 6.321181 ACACCAGTCACAAATATTCTGTTGTT 59.679 34.615 0.27 0.00 35.81 2.83
101 102 5.827797 ACACCAGTCACAAATATTCTGTTGT 59.172 36.000 0.27 0.27 38.49 3.32
102 103 6.317789 ACACCAGTCACAAATATTCTGTTG 57.682 37.500 0.00 0.00 0.00 3.33
103 104 9.733556 TTATACACCAGTCACAAATATTCTGTT 57.266 29.630 0.00 0.00 0.00 3.16
104 105 9.905713 ATTATACACCAGTCACAAATATTCTGT 57.094 29.630 0.00 0.00 0.00 3.41
111 112 8.988934 CGCTAATATTATACACCAGTCACAAAT 58.011 33.333 0.00 0.00 0.00 2.32
112 113 7.439955 CCGCTAATATTATACACCAGTCACAAA 59.560 37.037 0.00 0.00 0.00 2.83
113 114 6.926826 CCGCTAATATTATACACCAGTCACAA 59.073 38.462 0.00 0.00 0.00 3.33
114 115 6.452242 CCGCTAATATTATACACCAGTCACA 58.548 40.000 0.00 0.00 0.00 3.58
115 116 5.347907 GCCGCTAATATTATACACCAGTCAC 59.652 44.000 0.00 0.00 0.00 3.67
116 117 5.475719 GCCGCTAATATTATACACCAGTCA 58.524 41.667 0.00 0.00 0.00 3.41
117 118 4.561606 CGCCGCTAATATTATACACCAGTC 59.438 45.833 0.00 0.00 0.00 3.51
118 119 4.219070 TCGCCGCTAATATTATACACCAGT 59.781 41.667 0.00 0.00 0.00 4.00
119 120 4.561606 GTCGCCGCTAATATTATACACCAG 59.438 45.833 0.00 0.00 0.00 4.00
120 121 4.022155 TGTCGCCGCTAATATTATACACCA 60.022 41.667 0.00 0.00 0.00 4.17
121 122 4.487948 TGTCGCCGCTAATATTATACACC 58.512 43.478 0.00 0.00 0.00 4.16
122 123 5.442390 CGTTGTCGCCGCTAATATTATACAC 60.442 44.000 0.00 0.00 0.00 2.90
123 124 4.618067 CGTTGTCGCCGCTAATATTATACA 59.382 41.667 0.00 0.00 0.00 2.29
124 125 4.853196 TCGTTGTCGCCGCTAATATTATAC 59.147 41.667 0.00 0.00 36.96 1.47
125 126 5.045668 TCGTTGTCGCCGCTAATATTATA 57.954 39.130 0.00 0.00 36.96 0.98
126 127 3.904571 TCGTTGTCGCCGCTAATATTAT 58.095 40.909 0.00 0.00 36.96 1.28
127 128 3.352554 TCGTTGTCGCCGCTAATATTA 57.647 42.857 0.00 0.00 36.96 0.98
128 129 2.212869 TCGTTGTCGCCGCTAATATT 57.787 45.000 0.00 0.00 36.96 1.28
129 130 2.058798 CATCGTTGTCGCCGCTAATAT 58.941 47.619 0.00 0.00 36.96 1.28
130 131 1.202325 ACATCGTTGTCGCCGCTAATA 60.202 47.619 0.00 0.00 36.96 0.98
131 132 0.459585 ACATCGTTGTCGCCGCTAAT 60.460 50.000 0.00 0.00 36.96 1.73
132 133 1.080366 ACATCGTTGTCGCCGCTAA 60.080 52.632 0.00 0.00 36.96 3.09
133 134 1.803922 CACATCGTTGTCGCCGCTA 60.804 57.895 0.00 0.00 32.34 4.26
134 135 3.112075 CACATCGTTGTCGCCGCT 61.112 61.111 0.00 0.00 32.34 5.52
135 136 3.071459 CTCACATCGTTGTCGCCGC 62.071 63.158 0.00 0.00 32.34 6.53
136 137 0.455464 TACTCACATCGTTGTCGCCG 60.455 55.000 0.00 0.00 32.34 6.46
137 138 1.852895 GATACTCACATCGTTGTCGCC 59.147 52.381 0.00 0.00 32.34 5.54
138 139 1.513178 CGATACTCACATCGTTGTCGC 59.487 52.381 0.00 0.00 42.22 5.19
139 140 2.109463 CCGATACTCACATCGTTGTCG 58.891 52.381 0.00 0.00 44.98 4.35
140 141 3.416119 TCCGATACTCACATCGTTGTC 57.584 47.619 0.00 0.00 44.98 3.18
141 142 3.428999 CCTTCCGATACTCACATCGTTGT 60.429 47.826 4.96 0.00 44.98 3.32
142 143 3.116300 CCTTCCGATACTCACATCGTTG 58.884 50.000 4.96 0.00 44.98 4.10
143 144 3.021695 TCCTTCCGATACTCACATCGTT 58.978 45.455 4.96 0.00 44.98 3.85
144 145 2.358267 GTCCTTCCGATACTCACATCGT 59.642 50.000 4.96 0.00 44.98 3.73
145 146 2.357952 TGTCCTTCCGATACTCACATCG 59.642 50.000 0.00 0.00 45.81 3.84
146 147 4.202161 ACATGTCCTTCCGATACTCACATC 60.202 45.833 0.00 0.00 0.00 3.06
147 148 3.706594 ACATGTCCTTCCGATACTCACAT 59.293 43.478 0.00 0.00 0.00 3.21
148 149 3.096852 ACATGTCCTTCCGATACTCACA 58.903 45.455 0.00 0.00 0.00 3.58
149 150 3.491104 GGACATGTCCTTCCGATACTCAC 60.491 52.174 33.47 5.50 46.16 3.51
150 151 2.693591 GGACATGTCCTTCCGATACTCA 59.306 50.000 33.47 0.00 46.16 3.41
151 152 3.372660 GGACATGTCCTTCCGATACTC 57.627 52.381 33.47 6.13 46.16 2.59
162 163 2.690778 GCACTTGCCGGACATGTCC 61.691 63.158 31.59 31.59 46.18 4.02
163 164 2.870372 GCACTTGCCGGACATGTC 59.130 61.111 17.91 17.91 34.59 3.06
183 184 4.812476 TCACTCATTCGGCCCGCG 62.812 66.667 0.00 0.00 0.00 6.46
184 185 3.195698 GTCACTCATTCGGCCCGC 61.196 66.667 0.00 0.00 0.00 6.13
185 186 2.885644 CGTCACTCATTCGGCCCG 60.886 66.667 0.00 0.00 0.00 6.13
186 187 1.810030 GTCGTCACTCATTCGGCCC 60.810 63.158 0.00 0.00 0.00 5.80
187 188 1.215647 AGTCGTCACTCATTCGGCC 59.784 57.895 0.00 0.00 0.00 6.13
188 189 4.891566 AGTCGTCACTCATTCGGC 57.108 55.556 0.00 0.00 0.00 5.54
508 509 2.633481 GCCAAGTTATCTCCTACCCGAT 59.367 50.000 0.00 0.00 0.00 4.18
509 510 2.037144 GCCAAGTTATCTCCTACCCGA 58.963 52.381 0.00 0.00 0.00 5.14
510 511 1.760613 TGCCAAGTTATCTCCTACCCG 59.239 52.381 0.00 0.00 0.00 5.28
511 512 3.136626 ACATGCCAAGTTATCTCCTACCC 59.863 47.826 0.00 0.00 0.00 3.69
512 513 4.130118 CACATGCCAAGTTATCTCCTACC 58.870 47.826 0.00 0.00 0.00 3.18
561 2241 3.186047 CGTCCGTGGGAATGTCGC 61.186 66.667 0.00 0.00 31.38 5.19
686 2367 0.977395 CCGTGGAAGGAGAGGAGTTT 59.023 55.000 0.00 0.00 0.00 2.66
687 2368 0.114560 TCCGTGGAAGGAGAGGAGTT 59.885 55.000 0.00 0.00 34.92 3.01
688 2369 0.336737 ATCCGTGGAAGGAGAGGAGT 59.663 55.000 0.00 0.00 44.55 3.85
689 2370 1.036707 GATCCGTGGAAGGAGAGGAG 58.963 60.000 0.00 0.00 44.55 3.69
690 2371 0.631753 AGATCCGTGGAAGGAGAGGA 59.368 55.000 0.00 0.00 44.55 3.71
691 2372 0.749649 CAGATCCGTGGAAGGAGAGG 59.250 60.000 0.00 0.00 44.55 3.69
692 2373 0.103937 GCAGATCCGTGGAAGGAGAG 59.896 60.000 0.00 0.00 44.55 3.20
693 2374 1.667154 CGCAGATCCGTGGAAGGAGA 61.667 60.000 0.00 0.00 44.55 3.71
697 2378 2.169789 CAGCGCAGATCCGTGGAAG 61.170 63.158 11.47 0.00 0.00 3.46
698 2379 2.125552 CAGCGCAGATCCGTGGAA 60.126 61.111 11.47 0.00 0.00 3.53
789 2480 0.951558 TGAACTTCCGAAGCTTTGGC 59.048 50.000 25.94 13.13 39.06 4.52
861 2552 3.429580 GGAGGGGAATGGGGGTGG 61.430 72.222 0.00 0.00 0.00 4.61
919 2610 2.165998 AGGTGCTTTCTGATTTGGCTC 58.834 47.619 0.00 0.00 0.00 4.70
945 2636 1.931551 CGTGTGTGTGTGTGGCTAC 59.068 57.895 0.00 0.00 0.00 3.58
946 2637 1.885388 GCGTGTGTGTGTGTGGCTA 60.885 57.895 0.00 0.00 0.00 3.93
947 2638 3.202001 GCGTGTGTGTGTGTGGCT 61.202 61.111 0.00 0.00 0.00 4.75
948 2639 3.504273 TGCGTGTGTGTGTGTGGC 61.504 61.111 0.00 0.00 0.00 5.01
949 2640 2.394563 TGTGCGTGTGTGTGTGTGG 61.395 57.895 0.00 0.00 0.00 4.17
950 2641 1.225991 GTGTGCGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
951 2642 2.735677 CGTGTGCGTGTGTGTGTGT 61.736 57.895 0.00 0.00 0.00 3.72
952 2643 2.021243 CGTGTGCGTGTGTGTGTG 59.979 61.111 0.00 0.00 0.00 3.82
953 2644 3.860125 GCGTGTGCGTGTGTGTGT 61.860 61.111 0.00 0.00 40.81 3.72
1075 2768 2.522198 ATCTGGTCTGGGAGCGGAGT 62.522 60.000 12.63 1.38 46.36 3.85
1531 3233 0.256464 TCGTCTTCCTCCTCCTCCTC 59.744 60.000 0.00 0.00 0.00 3.71
1532 3234 0.033894 GTCGTCTTCCTCCTCCTCCT 60.034 60.000 0.00 0.00 0.00 3.69
1533 3235 1.378124 CGTCGTCTTCCTCCTCCTCC 61.378 65.000 0.00 0.00 0.00 4.30
1539 3241 1.134281 GTCGTCGTCGTCTTCCTCC 59.866 63.158 1.33 0.00 38.33 4.30
1542 3244 2.868787 GCGTCGTCGTCGTCTTCC 60.869 66.667 13.09 0.00 39.49 3.46
1576 3278 2.567985 GTAGTCGAGGAAGAGGGAGAG 58.432 57.143 0.00 0.00 0.00 3.20
1668 3370 0.818040 GAACTGTGTGGAACCGGCTT 60.818 55.000 0.00 0.00 34.36 4.35
1681 3383 5.130477 TCAAACAGAGTTTAGGAGGAACTGT 59.870 40.000 0.00 0.00 41.55 3.55
1691 3393 7.229506 AGAGACCCAATTTCAAACAGAGTTTAG 59.770 37.037 0.00 0.00 0.00 1.85
1696 3398 5.180868 CAGAGAGACCCAATTTCAAACAGAG 59.819 44.000 0.00 0.00 0.00 3.35
1957 3659 1.010935 CAGAGTACAGCGCTGGTGTG 61.011 60.000 38.27 25.98 44.23 3.82
1990 3692 2.295253 ACTAAAGTGGAATCGCGGAG 57.705 50.000 6.13 0.00 0.00 4.63
1991 3693 2.028839 TGAACTAAAGTGGAATCGCGGA 60.029 45.455 6.13 0.00 0.00 5.54
2025 3727 2.168496 TCTGTAAGGCGAGCTTGTACT 58.832 47.619 2.14 0.00 0.00 2.73
2048 3750 3.446799 CACAAAACCAACCATGACTGTG 58.553 45.455 0.00 0.00 0.00 3.66
2064 3767 6.761242 ACTTCGCAGTATATTATCAGCACAAA 59.239 34.615 0.00 0.00 0.00 2.83
2073 3776 7.762588 ACTAGGTGACTTCGCAGTATATTAT 57.237 36.000 0.00 0.00 43.67 1.28
2078 3781 4.335874 CAGTACTAGGTGACTTCGCAGTAT 59.664 45.833 0.00 0.00 43.67 2.12
2084 3787 2.747989 TCTGCAGTACTAGGTGACTTCG 59.252 50.000 14.67 0.00 43.67 3.79
2124 3827 8.435187 TGCCTTTAGAACAGATATCATTCAGAT 58.565 33.333 17.36 4.70 40.86 2.90
2432 4293 8.667463 CCTTTTCAAACACTGAATGTCAAAATT 58.333 29.630 0.00 0.00 43.64 1.82
2579 4457 2.236893 TGCACTCAGGAGTTGCATATCA 59.763 45.455 16.88 1.81 40.20 2.15
2694 4602 0.389426 AACACGGTGCCGACAGTATC 60.389 55.000 18.16 0.00 42.83 2.24
2761 4669 3.877508 CCTCCGTTCTAAAATGGGTCATC 59.122 47.826 0.00 0.00 41.27 2.92
2767 4675 3.629142 ACTCCCTCCGTTCTAAAATGG 57.371 47.619 0.00 0.00 42.15 3.16
2768 4676 5.593679 TCTACTCCCTCCGTTCTAAAATG 57.406 43.478 0.00 0.00 0.00 2.32
2772 4759 9.425248 TTTTAATATCTACTCCCTCCGTTCTAA 57.575 33.333 0.00 0.00 0.00 2.10
2774 4761 7.909485 TTTTAATATCTACTCCCTCCGTTCT 57.091 36.000 0.00 0.00 0.00 3.01
2872 4859 7.177568 TGGGAAACAGCTATTATTTGCAAGTTA 59.822 33.333 0.00 0.00 32.43 2.24
3237 5235 6.620678 TGAAGCATTATTTCAGTTAGCAACC 58.379 36.000 0.00 0.00 31.35 3.77
3307 5305 2.241176 ACACTGGAACTTGGACCTGAAA 59.759 45.455 0.00 0.00 0.00 2.69
3558 5582 7.082602 CCACATTTTCTTCTTCTTCAGATGTG 58.917 38.462 0.00 0.00 35.84 3.21
3561 5585 5.771666 TGCCACATTTTCTTCTTCTTCAGAT 59.228 36.000 0.00 0.00 0.00 2.90
3571 6326 3.715628 ACTGTGTGCCACATTTTCTTC 57.284 42.857 0.00 0.00 43.71 2.87
3574 6329 5.631026 CATAGTACTGTGTGCCACATTTTC 58.369 41.667 11.23 0.00 43.71 2.29
3613 6374 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
3614 6375 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
3615 6376 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
3616 6377 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
3617 6378 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
3662 6423 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
3663 6424 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
3664 6425 9.669353 CTCCGTAAACTAATATAAGAGCGTTTA 57.331 33.333 0.00 0.00 0.00 2.01
3665 6426 7.650903 CCTCCGTAAACTAATATAAGAGCGTTT 59.349 37.037 0.00 0.00 0.00 3.60
3666 6427 7.144000 CCTCCGTAAACTAATATAAGAGCGTT 58.856 38.462 0.00 0.00 0.00 4.84
3667 6428 6.294397 CCCTCCGTAAACTAATATAAGAGCGT 60.294 42.308 0.00 0.00 0.00 5.07
3668 6429 6.072286 TCCCTCCGTAAACTAATATAAGAGCG 60.072 42.308 0.00 0.00 0.00 5.03
3669 6430 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
3670 6431 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
3671 6432 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
3672 6433 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
3673 6434 9.646522 AAGTACTCCCTCCGTAAACTAATATAA 57.353 33.333 0.00 0.00 0.00 0.98
3674 6435 9.646522 AAAGTACTCCCTCCGTAAACTAATATA 57.353 33.333 0.00 0.00 0.00 0.86
3675 6436 8.544687 AAAGTACTCCCTCCGTAAACTAATAT 57.455 34.615 0.00 0.00 0.00 1.28
3676 6437 7.961326 AAAGTACTCCCTCCGTAAACTAATA 57.039 36.000 0.00 0.00 0.00 0.98
3677 6438 6.864151 AAAGTACTCCCTCCGTAAACTAAT 57.136 37.500 0.00 0.00 0.00 1.73
3678 6439 7.175104 TCTAAAGTACTCCCTCCGTAAACTAA 58.825 38.462 0.00 0.00 0.00 2.24
3679 6440 6.721318 TCTAAAGTACTCCCTCCGTAAACTA 58.279 40.000 0.00 0.00 0.00 2.24
3680 6441 5.574188 TCTAAAGTACTCCCTCCGTAAACT 58.426 41.667 0.00 0.00 0.00 2.66
3681 6442 5.904362 TCTAAAGTACTCCCTCCGTAAAC 57.096 43.478 0.00 0.00 0.00 2.01
3682 6443 5.774690 TGTTCTAAAGTACTCCCTCCGTAAA 59.225 40.000 0.00 0.00 0.00 2.01
3683 6444 5.324409 TGTTCTAAAGTACTCCCTCCGTAA 58.676 41.667 0.00 0.00 0.00 3.18
3684 6445 4.922206 TGTTCTAAAGTACTCCCTCCGTA 58.078 43.478 0.00 0.00 0.00 4.02
3685 6446 3.762823 CTGTTCTAAAGTACTCCCTCCGT 59.237 47.826 0.00 0.00 0.00 4.69
3686 6447 3.429135 GCTGTTCTAAAGTACTCCCTCCG 60.429 52.174 0.00 0.00 0.00 4.63
3687 6448 3.514309 TGCTGTTCTAAAGTACTCCCTCC 59.486 47.826 0.00 0.00 0.00 4.30
3688 6449 4.803098 TGCTGTTCTAAAGTACTCCCTC 57.197 45.455 0.00 0.00 0.00 4.30
3689 6450 4.777896 TCATGCTGTTCTAAAGTACTCCCT 59.222 41.667 0.00 0.00 0.00 4.20
3690 6451 4.870991 GTCATGCTGTTCTAAAGTACTCCC 59.129 45.833 0.00 0.00 0.00 4.30
3691 6452 5.479306 TGTCATGCTGTTCTAAAGTACTCC 58.521 41.667 0.00 0.00 0.00 3.85
3719 6482 2.279173 AGAGGTGGGCTGGTAAAGAAT 58.721 47.619 0.00 0.00 0.00 2.40
3769 6532 1.991813 TGGTGAATTGGTGATCCCAGA 59.008 47.619 3.55 0.00 46.31 3.86
3803 6566 6.119536 TGGTGATCCCAGACAATACATAAAC 58.880 40.000 0.00 0.00 38.72 2.01
3914 6687 3.793559 CTGTAAAGGTTGATCCCTACCG 58.206 50.000 0.00 0.00 41.99 4.02
3984 6757 3.145286 TGTCATGACGAAGCATTGGAAA 58.855 40.909 20.54 0.00 0.00 3.13
4318 7092 3.563390 GCATAGCTTTGATGGAGGAGTTC 59.437 47.826 8.49 0.00 0.00 3.01
4319 7093 3.054139 TGCATAGCTTTGATGGAGGAGTT 60.054 43.478 8.49 0.00 0.00 3.01
4392 7172 1.082104 GCGGTCAGGCGTTTCAAAG 60.082 57.895 0.00 0.00 0.00 2.77
4393 7173 1.098712 AAGCGGTCAGGCGTTTCAAA 61.099 50.000 0.00 0.00 38.18 2.69
4394 7174 1.098712 AAAGCGGTCAGGCGTTTCAA 61.099 50.000 0.00 0.00 38.18 2.69
4395 7175 1.525077 AAAGCGGTCAGGCGTTTCA 60.525 52.632 0.00 0.00 38.18 2.69
4418 7206 0.917259 GTGAGTCTGCATTACGCGAG 59.083 55.000 15.93 0.00 46.97 5.03
4455 7243 5.263599 ACCATTAAACATTCAGGCAGATCA 58.736 37.500 0.00 0.00 0.00 2.92
4496 7288 4.946157 AGTTCATGGTGCCAAGAATAAGAG 59.054 41.667 11.34 0.00 36.32 2.85
4497 7289 4.701651 CAGTTCATGGTGCCAAGAATAAGA 59.298 41.667 11.34 0.00 36.32 2.10
4501 7293 3.159213 TCAGTTCATGGTGCCAAGAAT 57.841 42.857 11.34 0.45 36.32 2.40
4523 7315 4.621991 TGTCAAGAGCTCAGTTCAGTAAC 58.378 43.478 17.77 1.25 35.72 2.50
4524 7316 4.342378 ACTGTCAAGAGCTCAGTTCAGTAA 59.658 41.667 23.08 0.86 39.00 2.24
4525 7317 3.891977 ACTGTCAAGAGCTCAGTTCAGTA 59.108 43.478 23.08 2.61 39.00 2.74
4535 7327 0.755079 TCTGCACACTGTCAAGAGCT 59.245 50.000 0.00 0.00 0.00 4.09
4573 7365 1.559149 GCCGTGGCAGCACAAAAATG 61.559 55.000 5.89 0.00 41.49 2.32
4827 7619 4.929808 ACGAAATTCTGCAGTTACGATCTT 59.070 37.500 14.67 0.00 0.00 2.40
4905 7700 3.369147 CACAAAGAGCTAACTGACGATGG 59.631 47.826 0.00 0.00 0.00 3.51
5028 7825 7.534085 TTTGTACACTGACAGTAAACAAGAG 57.466 36.000 23.41 8.65 35.13 2.85
5080 7972 2.874701 CGGTTCTCAAGAGCCATAATGG 59.125 50.000 12.61 0.00 44.50 3.16
5088 7980 1.273886 AGACCTTCGGTTCTCAAGAGC 59.726 52.381 0.00 0.00 35.25 4.09
5119 8013 3.162147 TCATCCCGTTCATCCCAAAAA 57.838 42.857 0.00 0.00 0.00 1.94
5169 8066 3.786635 ACAAGCACATCTCCTTATCGAC 58.213 45.455 0.00 0.00 0.00 4.20
5333 9669 3.281727 AATGGTGTGAATATCCGTGCT 57.718 42.857 0.00 0.00 0.00 4.40
5337 9673 2.687425 TGGCAAATGGTGTGAATATCCG 59.313 45.455 0.00 0.00 0.00 4.18
5396 9732 4.348168 AGATTCTCTACTGTGGTGTGGTTT 59.652 41.667 0.00 0.00 0.00 3.27
5551 9887 2.435938 CATGTGCCGCGTACCCTT 60.436 61.111 4.92 0.00 0.00 3.95
5614 9950 3.734463 AGAATATCTCTCGTCTCGCTGA 58.266 45.455 0.00 0.00 0.00 4.26
5639 9975 0.601558 TTCAGTCGCCGCTATATCCC 59.398 55.000 0.00 0.00 0.00 3.85
5640 9976 2.433868 TTTCAGTCGCCGCTATATCC 57.566 50.000 0.00 0.00 0.00 2.59
5641 9977 4.992381 AATTTTCAGTCGCCGCTATATC 57.008 40.909 0.00 0.00 0.00 1.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.