Multiple sequence alignment - TraesCS4B01G237600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G237600 chr4B 100.000 3449 0 0 1 3449 495357630 495354182 0.000000e+00 6370.0
1 TraesCS4B01G237600 chr4B 93.407 1441 89 4 1011 2451 495148074 495149508 0.000000e+00 2130.0
2 TraesCS4B01G237600 chr4B 92.564 659 18 17 1 630 31986469 31987125 0.000000e+00 917.0
3 TraesCS4B01G237600 chr4B 98.058 515 7 2 1 514 561390319 561390831 0.000000e+00 893.0
4 TraesCS4B01G237600 chr4B 97.476 515 11 2 1 514 185871171 185870658 0.000000e+00 878.0
5 TraesCS4B01G237600 chr4B 97.561 41 0 1 2570 2609 495149602 495149642 6.180000e-08 69.4
6 TraesCS4B01G237600 chr4D 94.424 2224 81 20 623 2817 400928786 400926577 0.000000e+00 3380.0
7 TraesCS4B01G237600 chr4D 93.824 1441 83 4 1011 2451 400827110 400828544 0.000000e+00 2163.0
8 TraesCS4B01G237600 chr4D 96.603 1148 39 0 1239 2386 417422532 417421385 0.000000e+00 1905.0
9 TraesCS4B01G237600 chr4D 91.054 503 28 3 623 1115 417423060 417422565 0.000000e+00 664.0
10 TraesCS4B01G237600 chr4D 84.975 599 33 29 2562 3108 417419681 417419088 3.890000e-154 555.0
11 TraesCS4B01G237600 chr4D 93.421 152 10 0 2814 2965 400925332 400925181 3.460000e-55 226.0
12 TraesCS4B01G237600 chr4D 97.561 41 0 1 2570 2609 400828635 400828675 6.180000e-08 69.4
13 TraesCS4B01G237600 chr4A 91.682 2188 114 42 659 2817 58810559 58808411 0.000000e+00 2970.0
14 TraesCS4B01G237600 chr4A 93.533 1438 87 4 1011 2448 58570116 58571547 0.000000e+00 2135.0
15 TraesCS4B01G237600 chr4A 80.687 233 34 10 3220 3448 491664699 491664924 1.650000e-38 171.0
16 TraesCS4B01G237600 chr4A 94.624 93 5 0 2829 2921 58808368 58808276 9.980000e-31 145.0
17 TraesCS4B01G237600 chr5B 98.062 516 8 2 1 514 672859976 672860491 0.000000e+00 896.0
18 TraesCS4B01G237600 chr5B 97.485 517 9 3 1 514 648611519 648611004 0.000000e+00 880.0
19 TraesCS4B01G237600 chr7B 97.674 516 9 3 1 514 655571939 655571425 0.000000e+00 883.0
20 TraesCS4B01G237600 chr7B 97.476 515 12 1 1 514 89203225 89202711 0.000000e+00 878.0
21 TraesCS4B01G237600 chr6B 97.670 515 9 2 1 514 502744169 502744681 0.000000e+00 881.0
22 TraesCS4B01G237600 chr1B 97.661 513 8 3 1 511 615015881 615016391 0.000000e+00 878.0
23 TraesCS4B01G237600 chr3D 82.301 226 31 9 3220 3439 20336944 20337166 1.630000e-43 187.0
24 TraesCS4B01G237600 chr6D 81.197 234 30 9 3192 3413 460770871 460771102 3.540000e-40 176.0
25 TraesCS4B01G237600 chr6D 81.057 227 35 5 3228 3449 315980103 315979880 1.270000e-39 174.0
26 TraesCS4B01G237600 chr5D 79.574 235 41 4 3220 3449 377177305 377177073 9.910000e-36 161.0
27 TraesCS4B01G237600 chr5A 79.032 248 38 9 3192 3426 492629733 492629487 1.280000e-34 158.0
28 TraesCS4B01G237600 chr2B 78.599 257 42 7 3205 3449 771811686 771811941 1.280000e-34 158.0
29 TraesCS4B01G237600 chr1D 78.367 245 41 7 3192 3426 481445397 481445155 7.710000e-32 148.0
30 TraesCS4B01G237600 chr6A 78.448 232 42 5 3222 3447 209893249 209893020 9.980000e-31 145.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G237600 chr4B 495354182 495357630 3448 True 6370.000000 6370 100.000000 1 3449 1 chr4B.!!$R2 3448
1 TraesCS4B01G237600 chr4B 495148074 495149642 1568 False 1099.700000 2130 95.484000 1011 2609 2 chr4B.!!$F3 1598
2 TraesCS4B01G237600 chr4B 31986469 31987125 656 False 917.000000 917 92.564000 1 630 1 chr4B.!!$F1 629
3 TraesCS4B01G237600 chr4B 561390319 561390831 512 False 893.000000 893 98.058000 1 514 1 chr4B.!!$F2 513
4 TraesCS4B01G237600 chr4B 185870658 185871171 513 True 878.000000 878 97.476000 1 514 1 chr4B.!!$R1 513
5 TraesCS4B01G237600 chr4D 400925181 400928786 3605 True 1803.000000 3380 93.922500 623 2965 2 chr4D.!!$R1 2342
6 TraesCS4B01G237600 chr4D 400827110 400828675 1565 False 1116.200000 2163 95.692500 1011 2609 2 chr4D.!!$F1 1598
7 TraesCS4B01G237600 chr4D 417419088 417423060 3972 True 1041.333333 1905 90.877333 623 3108 3 chr4D.!!$R2 2485
8 TraesCS4B01G237600 chr4A 58570116 58571547 1431 False 2135.000000 2135 93.533000 1011 2448 1 chr4A.!!$F1 1437
9 TraesCS4B01G237600 chr4A 58808276 58810559 2283 True 1557.500000 2970 93.153000 659 2921 2 chr4A.!!$R1 2262
10 TraesCS4B01G237600 chr5B 672859976 672860491 515 False 896.000000 896 98.062000 1 514 1 chr5B.!!$F1 513
11 TraesCS4B01G237600 chr5B 648611004 648611519 515 True 880.000000 880 97.485000 1 514 1 chr5B.!!$R1 513
12 TraesCS4B01G237600 chr7B 655571425 655571939 514 True 883.000000 883 97.674000 1 514 1 chr7B.!!$R2 513
13 TraesCS4B01G237600 chr7B 89202711 89203225 514 True 878.000000 878 97.476000 1 514 1 chr7B.!!$R1 513
14 TraesCS4B01G237600 chr6B 502744169 502744681 512 False 881.000000 881 97.670000 1 514 1 chr6B.!!$F1 513
15 TraesCS4B01G237600 chr1B 615015881 615016391 510 False 878.000000 878 97.661000 1 511 1 chr1B.!!$F1 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1022 0.250901 GAGAGCTCCAAGCCAAACCA 60.251 55.0 10.93 0.0 43.77 3.67 F
963 1023 0.251077 AGAGCTCCAAGCCAAACCAG 60.251 55.0 10.93 0.0 43.77 4.00 F
1395 1460 0.252650 AGCTGCTCTTCTCCCTCCTT 60.253 55.0 0.00 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1813 1878 1.025113 TTGAACACGGTGGCGAACAA 61.025 50.000 13.48 8.05 0.00 2.83 R
2289 2354 1.071471 CACGACCAGGTTCTTGCCT 59.929 57.895 0.00 0.00 39.99 4.75 R
3314 6274 0.037605 AACAAGGGACGGACGATGAC 60.038 55.000 0.00 0.00 0.00 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
136 137 1.030457 GCCTACGAGCAAGCCTACTA 58.970 55.000 0.00 0.00 0.00 1.82
514 520 1.858458 GCATACATTTCTAGTCGCGCA 59.142 47.619 8.75 0.00 0.00 6.09
657 691 1.585006 GAAGCAACGGAGTCGGAGA 59.415 57.895 4.48 0.00 45.00 3.71
673 707 3.059386 GAAAATGCGGCCGGGTGA 61.059 61.111 29.38 0.00 0.00 4.02
689 723 2.989824 GAGCCGGGCGCCTAGATA 60.990 66.667 28.56 0.00 38.78 1.98
699 736 1.540707 GCGCCTAGATAGGGTGAGTAC 59.459 57.143 7.99 0.00 43.82 2.73
733 779 2.201732 CAACTATTGATCCCGTCCACG 58.798 52.381 0.00 0.00 39.44 4.94
834 885 0.948141 GCTGCATGGTAGCTCGATCC 60.948 60.000 0.00 0.00 38.14 3.36
924 975 2.690497 CTCCTCGCTCCAATCTTGTCTA 59.310 50.000 0.00 0.00 0.00 2.59
954 1014 0.317770 GCGAGATCGAGAGCTCCAAG 60.318 60.000 10.93 1.91 40.52 3.61
962 1022 0.250901 GAGAGCTCCAAGCCAAACCA 60.251 55.000 10.93 0.00 43.77 3.67
963 1023 0.251077 AGAGCTCCAAGCCAAACCAG 60.251 55.000 10.93 0.00 43.77 4.00
964 1024 1.871126 GAGCTCCAAGCCAAACCAGC 61.871 60.000 0.87 0.00 43.77 4.85
965 1025 2.935740 GCTCCAAGCCAAACCAGCC 61.936 63.158 0.00 0.00 34.48 4.85
966 1026 1.228675 CTCCAAGCCAAACCAGCCT 60.229 57.895 0.00 0.00 0.00 4.58
992 1057 0.888619 CAGCAGAGGTAGACGAACCA 59.111 55.000 8.62 0.00 42.40 3.67
1134 1199 1.538950 GACAAGTACTTCGAGTCCCGT 59.461 52.381 4.77 0.00 39.75 5.28
1395 1460 0.252650 AGCTGCTCTTCTCCCTCCTT 60.253 55.000 0.00 0.00 0.00 3.36
1471 1536 3.680786 CCACCGTGGAGTCGCAGA 61.681 66.667 12.68 0.00 40.96 4.26
1476 1541 1.869574 CGTGGAGTCGCAGATCGTG 60.870 63.158 0.00 0.00 40.67 4.35
1560 1625 2.678934 TACTTCGGCGTGCTCCCT 60.679 61.111 6.85 0.00 0.00 4.20
1563 1628 3.302347 CTTCGGCGTGCTCCCTTCT 62.302 63.158 6.85 0.00 0.00 2.85
1692 1757 3.941188 CACACGGTGCACCTCCCT 61.941 66.667 32.28 10.17 0.00 4.20
1739 1804 2.826725 AGGCGCTCTACAAGTACTTCTT 59.173 45.455 7.64 0.00 36.75 2.52
1746 1811 0.317479 ACAAGTACTTCTTCGCCGCT 59.683 50.000 4.77 0.00 33.63 5.52
1813 1878 1.604593 GAGGCATGCCACAACCTGT 60.605 57.895 37.18 15.31 38.92 4.00
1842 1907 0.599204 CCGTGTTCAACAGCTACGGT 60.599 55.000 12.75 0.00 46.63 4.83
2289 2354 1.827789 GGACAACAAGCAGTGCCCA 60.828 57.895 12.58 0.00 0.00 5.36
2455 2520 6.024049 CCTGAGAGCGCTGTTTAAAAATTAG 58.976 40.000 18.48 0.00 0.00 1.73
2485 4140 1.849097 GGTCATCGGATCAACGTACC 58.151 55.000 0.00 0.00 34.94 3.34
2501 4157 1.938657 TACCGCAGCAGCTCTCTCAC 61.939 60.000 0.00 0.00 39.10 3.51
2528 4184 2.629050 ATCAATCGTCCCCGTCAGCG 62.629 60.000 0.00 0.00 35.01 5.18
2557 4213 2.158449 ACGTACGTGCCTCGCTATATAC 59.842 50.000 22.14 0.00 44.19 1.47
2609 4272 1.911293 TTCGGTTGCTTCGCTGCATC 61.911 55.000 0.00 3.16 42.96 3.91
2611 4274 2.575262 GTTGCTTCGCTGCATCGC 60.575 61.111 4.79 0.00 42.96 4.58
2612 4275 2.743538 TTGCTTCGCTGCATCGCT 60.744 55.556 4.79 0.00 42.96 4.93
2613 4276 3.030763 TTGCTTCGCTGCATCGCTG 62.031 57.895 4.79 1.50 42.96 5.18
2728 4425 0.903942 TGGCGTACGGTAAAAGGGAT 59.096 50.000 18.39 0.00 0.00 3.85
2826 5772 1.223187 CGTAGAAACCAACGCCAAGT 58.777 50.000 0.00 0.00 31.66 3.16
2827 5773 2.406130 CGTAGAAACCAACGCCAAGTA 58.594 47.619 0.00 0.00 31.66 2.24
2938 5890 2.562635 CTCCAATCAGCTGGATGTCTG 58.437 52.381 15.13 2.58 44.59 3.51
2958 5910 9.836864 ATGTCTGTTGTTTATGATAGAATGCTA 57.163 29.630 0.00 0.00 0.00 3.49
2984 5936 4.515191 TGTTGGTGTAGCTTTTCTGATGTC 59.485 41.667 0.00 0.00 0.00 3.06
2985 5937 4.623932 TGGTGTAGCTTTTCTGATGTCT 57.376 40.909 0.00 0.00 0.00 3.41
2986 5938 4.973168 TGGTGTAGCTTTTCTGATGTCTT 58.027 39.130 0.00 0.00 0.00 3.01
2992 5944 6.542005 TGTAGCTTTTCTGATGTCTTTGTCAA 59.458 34.615 0.00 0.00 0.00 3.18
3029 5982 1.078143 GGTGCCTGAGGTCATGGAC 60.078 63.158 0.00 0.00 33.47 4.02
3045 5998 1.635663 GGACCTTCGTTGTGATGCCG 61.636 60.000 0.00 0.00 0.00 5.69
3055 6008 0.593008 TGTGATGCCGCGTACGTATC 60.593 55.000 17.90 15.02 37.70 2.24
3056 6009 0.317603 GTGATGCCGCGTACGTATCT 60.318 55.000 17.90 0.00 37.70 1.98
3057 6010 1.069703 GTGATGCCGCGTACGTATCTA 60.070 52.381 17.90 0.52 37.70 1.98
3058 6011 1.808343 TGATGCCGCGTACGTATCTAT 59.192 47.619 17.90 5.57 37.70 1.98
3114 6074 3.855689 AAAGTGCCATCATTGTACTGC 57.144 42.857 0.00 0.00 0.00 4.40
3115 6075 1.372582 AGTGCCATCATTGTACTGCG 58.627 50.000 0.00 0.00 0.00 5.18
3116 6076 0.378257 GTGCCATCATTGTACTGCGG 59.622 55.000 0.00 0.00 0.00 5.69
3117 6077 0.035534 TGCCATCATTGTACTGCGGT 60.036 50.000 2.42 2.42 0.00 5.68
3118 6078 0.378257 GCCATCATTGTACTGCGGTG 59.622 55.000 8.92 0.00 0.00 4.94
3119 6079 2.011548 GCCATCATTGTACTGCGGTGA 61.012 52.381 8.92 0.00 0.00 4.02
3120 6080 2.564771 CCATCATTGTACTGCGGTGAT 58.435 47.619 8.92 0.00 0.00 3.06
3121 6081 2.945008 CCATCATTGTACTGCGGTGATT 59.055 45.455 8.92 0.00 0.00 2.57
3122 6082 3.242837 CCATCATTGTACTGCGGTGATTG 60.243 47.826 8.92 0.97 0.00 2.67
3123 6083 3.326836 TCATTGTACTGCGGTGATTGA 57.673 42.857 8.92 3.48 0.00 2.57
3124 6084 3.669536 TCATTGTACTGCGGTGATTGAA 58.330 40.909 8.92 0.00 0.00 2.69
3125 6085 3.684305 TCATTGTACTGCGGTGATTGAAG 59.316 43.478 8.92 0.00 0.00 3.02
3126 6086 2.831685 TGTACTGCGGTGATTGAAGT 57.168 45.000 8.92 0.00 0.00 3.01
3127 6087 3.120321 TGTACTGCGGTGATTGAAGTT 57.880 42.857 8.92 0.00 0.00 2.66
3128 6088 2.805671 TGTACTGCGGTGATTGAAGTTG 59.194 45.455 8.92 0.00 0.00 3.16
3129 6089 2.254546 ACTGCGGTGATTGAAGTTGA 57.745 45.000 0.00 0.00 0.00 3.18
3130 6090 2.571212 ACTGCGGTGATTGAAGTTGAA 58.429 42.857 0.00 0.00 0.00 2.69
3131 6091 3.149196 ACTGCGGTGATTGAAGTTGAAT 58.851 40.909 0.00 0.00 0.00 2.57
3132 6092 3.058016 ACTGCGGTGATTGAAGTTGAATG 60.058 43.478 0.00 0.00 0.00 2.67
3133 6093 2.884012 TGCGGTGATTGAAGTTGAATGT 59.116 40.909 0.00 0.00 0.00 2.71
3134 6094 3.236816 GCGGTGATTGAAGTTGAATGTG 58.763 45.455 0.00 0.00 0.00 3.21
3135 6095 3.058293 GCGGTGATTGAAGTTGAATGTGA 60.058 43.478 0.00 0.00 0.00 3.58
3136 6096 4.466828 CGGTGATTGAAGTTGAATGTGAC 58.533 43.478 0.00 0.00 0.00 3.67
3137 6097 4.613622 CGGTGATTGAAGTTGAATGTGACC 60.614 45.833 0.00 0.00 0.00 4.02
3138 6098 4.520492 GGTGATTGAAGTTGAATGTGACCT 59.480 41.667 0.00 0.00 0.00 3.85
3139 6099 5.335191 GGTGATTGAAGTTGAATGTGACCTC 60.335 44.000 0.00 0.00 0.00 3.85
3140 6100 4.761739 TGATTGAAGTTGAATGTGACCTCC 59.238 41.667 0.00 0.00 0.00 4.30
3141 6101 3.140325 TGAAGTTGAATGTGACCTCCC 57.860 47.619 0.00 0.00 0.00 4.30
3142 6102 2.441375 TGAAGTTGAATGTGACCTCCCA 59.559 45.455 0.00 0.00 0.00 4.37
3143 6103 3.117701 TGAAGTTGAATGTGACCTCCCAA 60.118 43.478 0.00 0.00 0.00 4.12
3144 6104 2.863809 AGTTGAATGTGACCTCCCAAC 58.136 47.619 0.00 0.00 35.46 3.77
3145 6105 1.535462 GTTGAATGTGACCTCCCAACG 59.465 52.381 0.00 0.00 0.00 4.10
3146 6106 1.052617 TGAATGTGACCTCCCAACGA 58.947 50.000 0.00 0.00 0.00 3.85
3147 6107 1.001974 TGAATGTGACCTCCCAACGAG 59.998 52.381 0.00 0.00 38.46 4.18
3148 6108 0.321653 AATGTGACCTCCCAACGAGC 60.322 55.000 0.00 0.00 37.27 5.03
3149 6109 1.480212 ATGTGACCTCCCAACGAGCA 61.480 55.000 0.00 0.00 37.27 4.26
3150 6110 1.296715 GTGACCTCCCAACGAGCAT 59.703 57.895 0.00 0.00 37.27 3.79
3151 6111 0.741221 GTGACCTCCCAACGAGCATC 60.741 60.000 0.00 0.00 37.27 3.91
3152 6112 1.153349 GACCTCCCAACGAGCATCC 60.153 63.158 0.00 0.00 37.27 3.51
3153 6113 2.202932 CCTCCCAACGAGCATCCG 60.203 66.667 0.00 0.00 37.27 4.18
3154 6114 2.892425 CTCCCAACGAGCATCCGC 60.892 66.667 0.00 0.00 38.99 5.54
3155 6115 4.467084 TCCCAACGAGCATCCGCC 62.467 66.667 0.00 0.00 39.83 6.13
3156 6116 4.776322 CCCAACGAGCATCCGCCA 62.776 66.667 0.00 0.00 39.83 5.69
3157 6117 3.197790 CCAACGAGCATCCGCCAG 61.198 66.667 0.00 0.00 39.83 4.85
3158 6118 2.434884 CAACGAGCATCCGCCAGT 60.435 61.111 0.00 0.00 39.83 4.00
3159 6119 2.034879 CAACGAGCATCCGCCAGTT 61.035 57.895 0.00 0.00 39.83 3.16
3160 6120 0.739462 CAACGAGCATCCGCCAGTTA 60.739 55.000 0.00 0.00 39.83 2.24
3161 6121 0.460284 AACGAGCATCCGCCAGTTAG 60.460 55.000 0.00 0.00 39.83 2.34
3162 6122 2.240500 CGAGCATCCGCCAGTTAGC 61.241 63.158 0.00 0.00 39.83 3.09
3163 6123 1.153369 GAGCATCCGCCAGTTAGCA 60.153 57.895 0.00 0.00 39.83 3.49
3164 6124 0.533755 GAGCATCCGCCAGTTAGCAT 60.534 55.000 0.00 0.00 39.83 3.79
3165 6125 0.107017 AGCATCCGCCAGTTAGCATT 60.107 50.000 0.00 0.00 39.83 3.56
3166 6126 1.140852 AGCATCCGCCAGTTAGCATTA 59.859 47.619 0.00 0.00 39.83 1.90
3167 6127 1.264288 GCATCCGCCAGTTAGCATTAC 59.736 52.381 0.00 0.00 0.00 1.89
3168 6128 2.838736 CATCCGCCAGTTAGCATTACT 58.161 47.619 0.00 0.00 0.00 2.24
3169 6129 2.309528 TCCGCCAGTTAGCATTACTG 57.690 50.000 6.04 6.04 42.06 2.74
3217 6177 8.733857 AAACTTTCGATCATTCAACTTCAATC 57.266 30.769 0.00 0.00 0.00 2.67
3218 6178 7.439157 ACTTTCGATCATTCAACTTCAATCA 57.561 32.000 0.00 0.00 0.00 2.57
3219 6179 7.874940 ACTTTCGATCATTCAACTTCAATCAA 58.125 30.769 0.00 0.00 0.00 2.57
3220 6180 7.805071 ACTTTCGATCATTCAACTTCAATCAAC 59.195 33.333 0.00 0.00 0.00 3.18
3221 6181 6.799926 TCGATCATTCAACTTCAATCAACA 57.200 33.333 0.00 0.00 0.00 3.33
3222 6182 7.200778 TCGATCATTCAACTTCAATCAACAA 57.799 32.000 0.00 0.00 0.00 2.83
3223 6183 7.819644 TCGATCATTCAACTTCAATCAACAAT 58.180 30.769 0.00 0.00 0.00 2.71
3224 6184 8.945057 TCGATCATTCAACTTCAATCAACAATA 58.055 29.630 0.00 0.00 0.00 1.90
3225 6185 9.558648 CGATCATTCAACTTCAATCAACAATAA 57.441 29.630 0.00 0.00 0.00 1.40
3232 6192 9.681692 TCAACTTCAATCAACAATAAACATCAG 57.318 29.630 0.00 0.00 0.00 2.90
3233 6193 9.681692 CAACTTCAATCAACAATAAACATCAGA 57.318 29.630 0.00 0.00 0.00 3.27
3278 6238 3.865446 TCGATAGACCAACTAGTGACGA 58.135 45.455 0.00 0.00 42.67 4.20
3279 6239 3.620374 TCGATAGACCAACTAGTGACGAC 59.380 47.826 0.00 0.00 42.67 4.34
3280 6240 3.622163 CGATAGACCAACTAGTGACGACT 59.378 47.826 0.00 0.00 34.35 4.18
3281 6241 4.807834 CGATAGACCAACTAGTGACGACTA 59.192 45.833 0.00 0.00 34.35 2.59
3282 6242 5.276773 CGATAGACCAACTAGTGACGACTAC 60.277 48.000 0.00 0.00 34.35 2.73
3283 6243 3.748083 AGACCAACTAGTGACGACTACA 58.252 45.455 0.00 0.00 33.21 2.74
3284 6244 4.139786 AGACCAACTAGTGACGACTACAA 58.860 43.478 0.00 0.00 33.21 2.41
3285 6245 4.215827 AGACCAACTAGTGACGACTACAAG 59.784 45.833 0.00 0.00 33.21 3.16
3286 6246 3.887716 ACCAACTAGTGACGACTACAAGT 59.112 43.478 0.00 0.00 33.21 3.16
3287 6247 5.065914 ACCAACTAGTGACGACTACAAGTA 58.934 41.667 0.00 0.00 33.21 2.24
3288 6248 5.049129 ACCAACTAGTGACGACTACAAGTAC 60.049 44.000 0.00 0.00 33.21 2.73
3289 6249 5.180868 CCAACTAGTGACGACTACAAGTACT 59.819 44.000 0.00 0.00 33.21 2.73
3290 6250 6.369890 CCAACTAGTGACGACTACAAGTACTA 59.630 42.308 0.00 0.00 33.21 1.82
3291 6251 7.095060 CCAACTAGTGACGACTACAAGTACTAA 60.095 40.741 0.00 0.00 33.21 2.24
3292 6252 7.969536 ACTAGTGACGACTACAAGTACTAAA 57.030 36.000 0.00 0.00 33.21 1.85
3293 6253 8.383318 ACTAGTGACGACTACAAGTACTAAAA 57.617 34.615 0.00 0.00 33.21 1.52
3294 6254 8.286097 ACTAGTGACGACTACAAGTACTAAAAC 58.714 37.037 0.00 0.00 33.21 2.43
3295 6255 6.138761 AGTGACGACTACAAGTACTAAAACG 58.861 40.000 0.00 0.90 0.00 3.60
3296 6256 6.017934 AGTGACGACTACAAGTACTAAAACGA 60.018 38.462 0.00 0.00 0.00 3.85
3297 6257 6.301842 GTGACGACTACAAGTACTAAAACGAG 59.698 42.308 0.00 0.00 0.00 4.18
3298 6258 5.149977 ACGACTACAAGTACTAAAACGAGC 58.850 41.667 0.00 0.00 0.00 5.03
3299 6259 4.556523 CGACTACAAGTACTAAAACGAGCC 59.443 45.833 0.00 0.00 0.00 4.70
3300 6260 4.479619 ACTACAAGTACTAAAACGAGCCG 58.520 43.478 0.00 0.00 0.00 5.52
3301 6261 3.648339 ACAAGTACTAAAACGAGCCGA 57.352 42.857 0.00 0.00 0.00 5.54
3302 6262 3.981211 ACAAGTACTAAAACGAGCCGAA 58.019 40.909 0.00 0.00 0.00 4.30
3303 6263 3.985925 ACAAGTACTAAAACGAGCCGAAG 59.014 43.478 0.00 0.00 0.00 3.79
3304 6264 4.232221 CAAGTACTAAAACGAGCCGAAGA 58.768 43.478 0.00 0.00 0.00 2.87
3305 6265 3.831112 AGTACTAAAACGAGCCGAAGAC 58.169 45.455 0.00 0.00 0.00 3.01
3306 6266 1.694639 ACTAAAACGAGCCGAAGACG 58.305 50.000 1.50 0.00 39.43 4.18
3307 6267 1.000938 ACTAAAACGAGCCGAAGACGT 60.001 47.619 0.00 0.00 41.97 4.34
3308 6268 1.385743 CTAAAACGAGCCGAAGACGTG 59.614 52.381 0.00 0.00 40.10 4.49
3309 6269 0.529119 AAAACGAGCCGAAGACGTGT 60.529 50.000 0.00 0.00 40.10 4.49
3310 6270 0.938168 AAACGAGCCGAAGACGTGTC 60.938 55.000 0.00 0.00 40.10 3.67
3311 6271 2.067091 AACGAGCCGAAGACGTGTCA 62.067 55.000 0.00 0.00 40.10 3.58
3312 6272 2.081212 CGAGCCGAAGACGTGTCAC 61.081 63.158 0.00 0.00 37.88 3.67
3313 6273 1.733399 GAGCCGAAGACGTGTCACC 60.733 63.158 0.00 0.00 37.88 4.02
3314 6274 3.103911 GCCGAAGACGTGTCACCG 61.104 66.667 0.00 5.12 37.88 4.94
3315 6275 2.333938 CCGAAGACGTGTCACCGT 59.666 61.111 0.00 0.00 45.18 4.83
3321 6281 3.036577 ACGTGTCACCGTCATCGT 58.963 55.556 0.00 0.00 35.95 3.73
3322 6282 1.081641 ACGTGTCACCGTCATCGTC 60.082 57.895 0.00 0.00 35.95 4.20
3323 6283 1.800315 CGTGTCACCGTCATCGTCC 60.800 63.158 0.00 0.00 35.01 4.79
3324 6284 1.800315 GTGTCACCGTCATCGTCCG 60.800 63.158 0.00 0.00 35.01 4.79
3325 6285 2.263021 TGTCACCGTCATCGTCCGT 61.263 57.895 0.00 0.00 35.01 4.69
3326 6286 1.513586 GTCACCGTCATCGTCCGTC 60.514 63.158 0.00 0.00 35.01 4.79
3327 6287 2.202570 CACCGTCATCGTCCGTCC 60.203 66.667 0.00 0.00 35.01 4.79
3328 6288 3.446570 ACCGTCATCGTCCGTCCC 61.447 66.667 0.00 0.00 35.01 4.46
3329 6289 3.138798 CCGTCATCGTCCGTCCCT 61.139 66.667 0.00 0.00 35.01 4.20
3330 6290 2.707849 CCGTCATCGTCCGTCCCTT 61.708 63.158 0.00 0.00 35.01 3.95
3331 6291 1.516386 CGTCATCGTCCGTCCCTTG 60.516 63.158 0.00 0.00 0.00 3.61
3332 6292 1.590147 GTCATCGTCCGTCCCTTGT 59.410 57.895 0.00 0.00 0.00 3.16
3333 6293 0.037605 GTCATCGTCCGTCCCTTGTT 60.038 55.000 0.00 0.00 0.00 2.83
3334 6294 0.037697 TCATCGTCCGTCCCTTGTTG 60.038 55.000 0.00 0.00 0.00 3.33
3335 6295 1.019278 CATCGTCCGTCCCTTGTTGG 61.019 60.000 0.00 0.00 0.00 3.77
3344 6304 4.889807 CCTTGTTGGGTCGGACAA 57.110 55.556 10.76 0.00 34.80 3.18
3345 6305 3.103637 CCTTGTTGGGTCGGACAAA 57.896 52.632 10.76 0.93 35.54 2.83
3346 6306 1.394618 CCTTGTTGGGTCGGACAAAA 58.605 50.000 10.76 0.55 35.54 2.44
3347 6307 1.066454 CCTTGTTGGGTCGGACAAAAC 59.934 52.381 10.76 13.14 35.54 2.43
3348 6308 2.021457 CTTGTTGGGTCGGACAAAACT 58.979 47.619 19.45 0.00 35.54 2.66
3349 6309 2.131776 TGTTGGGTCGGACAAAACTT 57.868 45.000 19.45 0.00 0.00 2.66
3350 6310 3.278668 TGTTGGGTCGGACAAAACTTA 57.721 42.857 19.45 4.73 0.00 2.24
3351 6311 3.822940 TGTTGGGTCGGACAAAACTTAT 58.177 40.909 19.45 0.00 0.00 1.73
3352 6312 4.208746 TGTTGGGTCGGACAAAACTTATT 58.791 39.130 19.45 0.00 0.00 1.40
3353 6313 4.036971 TGTTGGGTCGGACAAAACTTATTG 59.963 41.667 19.45 0.00 36.37 1.90
3354 6314 3.822940 TGGGTCGGACAAAACTTATTGT 58.177 40.909 10.76 0.00 45.82 2.71
3355 6315 4.970711 TGGGTCGGACAAAACTTATTGTA 58.029 39.130 10.76 0.00 43.31 2.41
3356 6316 4.998672 TGGGTCGGACAAAACTTATTGTAG 59.001 41.667 10.76 0.00 43.31 2.74
3357 6317 4.999311 GGGTCGGACAAAACTTATTGTAGT 59.001 41.667 10.76 0.00 43.31 2.73
3358 6318 6.165577 GGGTCGGACAAAACTTATTGTAGTA 58.834 40.000 10.76 0.00 43.31 1.82
3359 6319 6.312180 GGGTCGGACAAAACTTATTGTAGTAG 59.688 42.308 10.76 0.00 43.31 2.57
3360 6320 6.870439 GGTCGGACAAAACTTATTGTAGTAGT 59.130 38.462 10.76 0.00 43.31 2.73
3361 6321 7.062722 GGTCGGACAAAACTTATTGTAGTAGTC 59.937 40.741 10.76 0.00 43.31 2.59
3362 6322 7.596248 GTCGGACAAAACTTATTGTAGTAGTCA 59.404 37.037 2.62 0.00 43.31 3.41
3363 6323 8.143193 TCGGACAAAACTTATTGTAGTAGTCAA 58.857 33.333 0.00 0.00 43.31 3.18
3364 6324 8.767085 CGGACAAAACTTATTGTAGTAGTCAAA 58.233 33.333 0.00 0.00 43.31 2.69
3371 6331 9.538508 AACTTATTGTAGTAGTCAAAAAGTCGT 57.461 29.630 0.00 0.00 0.00 4.34
3372 6332 9.189723 ACTTATTGTAGTAGTCAAAAAGTCGTC 57.810 33.333 0.00 0.00 0.00 4.20
3373 6333 6.686130 ATTGTAGTAGTCAAAAAGTCGTCG 57.314 37.500 0.00 0.00 0.00 5.12
3374 6334 5.173774 TGTAGTAGTCAAAAAGTCGTCGT 57.826 39.130 0.00 0.00 0.00 4.34
3375 6335 4.971830 TGTAGTAGTCAAAAAGTCGTCGTG 59.028 41.667 0.00 0.00 0.00 4.35
3376 6336 2.793232 AGTAGTCAAAAAGTCGTCGTGC 59.207 45.455 0.00 0.00 0.00 5.34
3377 6337 1.935933 AGTCAAAAAGTCGTCGTGCT 58.064 45.000 0.00 0.00 0.00 4.40
3378 6338 3.088194 AGTCAAAAAGTCGTCGTGCTA 57.912 42.857 0.00 0.00 0.00 3.49
3379 6339 3.450578 AGTCAAAAAGTCGTCGTGCTAA 58.549 40.909 0.00 0.00 0.00 3.09
3380 6340 3.489785 AGTCAAAAAGTCGTCGTGCTAAG 59.510 43.478 0.00 0.00 0.00 2.18
3381 6341 3.488310 GTCAAAAAGTCGTCGTGCTAAGA 59.512 43.478 0.00 0.00 0.00 2.10
3382 6342 3.488310 TCAAAAAGTCGTCGTGCTAAGAC 59.512 43.478 0.00 0.00 35.41 3.01
3383 6343 2.061740 AAAGTCGTCGTGCTAAGACC 57.938 50.000 0.00 0.00 35.33 3.85
3384 6344 0.243095 AAGTCGTCGTGCTAAGACCC 59.757 55.000 0.00 0.00 35.33 4.46
3385 6345 1.153881 GTCGTCGTGCTAAGACCCC 60.154 63.158 0.00 0.00 35.33 4.95
3386 6346 1.604308 TCGTCGTGCTAAGACCCCA 60.604 57.895 0.00 0.00 35.33 4.96
3387 6347 0.968901 TCGTCGTGCTAAGACCCCAT 60.969 55.000 0.00 0.00 35.33 4.00
3388 6348 0.742505 CGTCGTGCTAAGACCCCATA 59.257 55.000 0.00 0.00 35.33 2.74
3389 6349 1.269102 CGTCGTGCTAAGACCCCATAG 60.269 57.143 0.00 0.00 35.33 2.23
3390 6350 2.029623 GTCGTGCTAAGACCCCATAGA 58.970 52.381 0.00 0.00 32.78 1.98
3391 6351 2.429610 GTCGTGCTAAGACCCCATAGAA 59.570 50.000 0.00 0.00 32.78 2.10
3392 6352 2.429610 TCGTGCTAAGACCCCATAGAAC 59.570 50.000 0.00 0.00 0.00 3.01
3393 6353 2.798499 CGTGCTAAGACCCCATAGAACG 60.798 54.545 0.00 0.00 42.81 3.95
3394 6354 2.429610 GTGCTAAGACCCCATAGAACGA 59.570 50.000 0.00 0.00 0.00 3.85
3395 6355 2.693591 TGCTAAGACCCCATAGAACGAG 59.306 50.000 0.00 0.00 0.00 4.18
3396 6356 2.546162 GCTAAGACCCCATAGAACGAGC 60.546 54.545 0.00 0.00 0.00 5.03
3397 6357 0.460311 AAGACCCCATAGAACGAGCG 59.540 55.000 0.00 0.00 0.00 5.03
3398 6358 1.591863 GACCCCATAGAACGAGCGC 60.592 63.158 0.00 0.00 0.00 5.92
3399 6359 2.292794 GACCCCATAGAACGAGCGCA 62.293 60.000 11.47 0.00 0.00 6.09
3400 6360 1.883084 CCCCATAGAACGAGCGCAC 60.883 63.158 11.47 0.96 0.00 5.34
3401 6361 1.883084 CCCATAGAACGAGCGCACC 60.883 63.158 11.47 0.00 0.00 5.01
3402 6362 1.153647 CCATAGAACGAGCGCACCA 60.154 57.895 11.47 0.00 0.00 4.17
3403 6363 1.148157 CCATAGAACGAGCGCACCAG 61.148 60.000 11.47 0.00 0.00 4.00
3404 6364 0.179137 CATAGAACGAGCGCACCAGA 60.179 55.000 11.47 0.00 0.00 3.86
3405 6365 0.530744 ATAGAACGAGCGCACCAGAA 59.469 50.000 11.47 0.00 0.00 3.02
3406 6366 0.388134 TAGAACGAGCGCACCAGAAC 60.388 55.000 11.47 0.00 0.00 3.01
3407 6367 1.954146 GAACGAGCGCACCAGAACA 60.954 57.895 11.47 0.00 0.00 3.18
3408 6368 1.495584 GAACGAGCGCACCAGAACAA 61.496 55.000 11.47 0.00 0.00 2.83
3409 6369 1.772063 AACGAGCGCACCAGAACAAC 61.772 55.000 11.47 0.00 0.00 3.32
3410 6370 2.243957 CGAGCGCACCAGAACAACA 61.244 57.895 11.47 0.00 0.00 3.33
3411 6371 1.771073 CGAGCGCACCAGAACAACAA 61.771 55.000 11.47 0.00 0.00 2.83
3412 6372 0.317020 GAGCGCACCAGAACAACAAC 60.317 55.000 11.47 0.00 0.00 3.32
3413 6373 1.299089 GCGCACCAGAACAACAACC 60.299 57.895 0.30 0.00 0.00 3.77
3414 6374 1.999071 GCGCACCAGAACAACAACCA 61.999 55.000 0.30 0.00 0.00 3.67
3415 6375 0.029300 CGCACCAGAACAACAACCAG 59.971 55.000 0.00 0.00 0.00 4.00
3416 6376 0.249031 GCACCAGAACAACAACCAGC 60.249 55.000 0.00 0.00 0.00 4.85
3417 6377 0.029300 CACCAGAACAACAACCAGCG 59.971 55.000 0.00 0.00 0.00 5.18
3418 6378 1.008538 CCAGAACAACAACCAGCGC 60.009 57.895 0.00 0.00 0.00 5.92
3419 6379 1.008538 CAGAACAACAACCAGCGCC 60.009 57.895 2.29 0.00 0.00 6.53
3420 6380 2.051345 GAACAACAACCAGCGCCG 60.051 61.111 2.29 0.00 0.00 6.46
3421 6381 2.515057 AACAACAACCAGCGCCGA 60.515 55.556 2.29 0.00 0.00 5.54
3422 6382 1.852067 GAACAACAACCAGCGCCGAT 61.852 55.000 2.29 0.00 0.00 4.18
3423 6383 2.128853 AACAACAACCAGCGCCGATG 62.129 55.000 2.29 0.00 0.00 3.84
3424 6384 2.031919 AACAACCAGCGCCGATGA 59.968 55.556 2.84 0.00 0.00 2.92
3425 6385 1.599518 AACAACCAGCGCCGATGAA 60.600 52.632 2.84 0.00 0.00 2.57
3426 6386 1.169661 AACAACCAGCGCCGATGAAA 61.170 50.000 2.84 0.00 0.00 2.69
3427 6387 1.169661 ACAACCAGCGCCGATGAAAA 61.170 50.000 2.84 0.00 0.00 2.29
3428 6388 0.039617 CAACCAGCGCCGATGAAAAA 60.040 50.000 2.84 0.00 0.00 1.94
3429 6389 0.887933 AACCAGCGCCGATGAAAAAT 59.112 45.000 2.84 0.00 0.00 1.82
3430 6390 1.745232 ACCAGCGCCGATGAAAAATA 58.255 45.000 2.84 0.00 0.00 1.40
3431 6391 1.670811 ACCAGCGCCGATGAAAAATAG 59.329 47.619 2.84 0.00 0.00 1.73
3432 6392 1.597937 CCAGCGCCGATGAAAAATAGC 60.598 52.381 2.84 0.00 0.00 2.97
3433 6393 0.304705 AGCGCCGATGAAAAATAGCG 59.695 50.000 2.29 0.00 45.91 4.26
3434 6394 0.027586 GCGCCGATGAAAAATAGCGT 59.972 50.000 0.00 0.00 45.00 5.07
3435 6395 1.259507 GCGCCGATGAAAAATAGCGTA 59.740 47.619 0.00 0.00 45.00 4.42
3436 6396 2.659291 GCGCCGATGAAAAATAGCGTAG 60.659 50.000 0.00 0.00 45.00 3.51
3437 6397 2.792674 CGCCGATGAAAAATAGCGTAGA 59.207 45.455 0.00 0.00 38.81 2.59
3438 6398 3.428870 CGCCGATGAAAAATAGCGTAGAT 59.571 43.478 0.00 0.00 38.81 1.98
3439 6399 4.619760 CGCCGATGAAAAATAGCGTAGATA 59.380 41.667 0.00 0.00 38.81 1.98
3440 6400 5.442909 CGCCGATGAAAAATAGCGTAGATAC 60.443 44.000 0.00 0.00 38.81 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
654 688 2.750237 ACCCGGCCGCATTTTCTC 60.750 61.111 22.85 0.00 0.00 2.87
657 691 3.061848 CTCACCCGGCCGCATTTT 61.062 61.111 22.85 0.00 0.00 1.82
678 712 0.828343 ACTCACCCTATCTAGGCGCC 60.828 60.000 21.89 21.89 42.26 6.53
689 723 0.825010 ACCGTTCACGTACTCACCCT 60.825 55.000 0.00 0.00 37.74 4.34
699 736 0.931702 TAGTTGTTGCACCGTTCACG 59.068 50.000 0.00 0.00 39.44 4.35
733 779 3.837570 AAGTCCCGGGCGGTGAAAC 62.838 63.158 18.49 6.91 0.00 2.78
823 874 0.594110 CGGAGAAGGGATCGAGCTAC 59.406 60.000 0.00 0.00 0.00 3.58
825 876 2.494530 GCGGAGAAGGGATCGAGCT 61.495 63.158 0.00 0.00 0.00 4.09
834 885 1.146263 AAATAGCCCGCGGAGAAGG 59.854 57.895 30.73 10.90 0.00 3.46
924 975 1.281353 GATCTCGCGCTCTCGATGT 59.719 57.895 5.56 0.00 37.87 3.06
943 998 0.250901 TGGTTTGGCTTGGAGCTCTC 60.251 55.000 14.64 4.40 41.99 3.20
954 1014 2.035626 TGGCTAGGCTGGTTTGGC 59.964 61.111 18.18 0.00 0.00 4.52
962 1022 2.686470 TCTGCTGCTGGCTAGGCT 60.686 61.111 18.18 0.00 42.39 4.58
963 1023 2.203042 CTCTGCTGCTGGCTAGGC 60.203 66.667 9.85 9.85 42.39 3.93
964 1024 1.045350 TACCTCTGCTGCTGGCTAGG 61.045 60.000 6.69 8.63 44.63 3.02
965 1025 0.388659 CTACCTCTGCTGCTGGCTAG 59.611 60.000 6.69 0.00 42.39 3.42
966 1026 0.033109 TCTACCTCTGCTGCTGGCTA 60.033 55.000 6.69 0.00 42.39 3.93
981 1046 1.516603 GCCGCTCTGGTTCGTCTAC 60.517 63.158 0.00 0.00 41.21 2.59
1134 1199 0.607217 TGGAGCCGTACTTCTCGACA 60.607 55.000 0.00 0.00 0.00 4.35
1431 1496 1.258445 GGAGCGAGGAGAAGTGGGAA 61.258 60.000 0.00 0.00 0.00 3.97
1560 1625 2.089980 GTACCTAGGTCTGACGCAGAA 58.910 52.381 20.32 0.00 42.46 3.02
1563 1628 0.038599 TGGTACCTAGGTCTGACGCA 59.961 55.000 20.32 8.79 0.00 5.24
1602 1667 3.549794 GAGCTGGAATATGAGCCACTTT 58.450 45.455 0.00 0.00 35.69 2.66
1692 1757 3.147595 CCGCTGACGAGGATGGGA 61.148 66.667 0.00 0.00 43.93 4.37
1782 1847 4.070552 GCCTCGTCCCGCTTCAGT 62.071 66.667 0.00 0.00 0.00 3.41
1813 1878 1.025113 TTGAACACGGTGGCGAACAA 61.025 50.000 13.48 8.05 0.00 2.83
1842 1907 1.376466 GAGAAGCACCTTGAGGCCA 59.624 57.895 5.01 0.00 39.32 5.36
2289 2354 1.071471 CACGACCAGGTTCTTGCCT 59.929 57.895 0.00 0.00 39.99 4.75
2455 2520 2.100631 CGATGACCGGTGCAGGTTC 61.101 63.158 14.63 4.05 46.09 3.62
2485 4140 1.806351 CTGTGAGAGAGCTGCTGCG 60.806 63.158 7.01 0.00 45.42 5.18
2501 4157 1.442526 GGGACGATTGATGGCTGCTG 61.443 60.000 0.00 0.00 0.00 4.41
2557 4213 4.571176 TGCATGACTGACTCGTACTAGTAG 59.429 45.833 1.87 0.00 0.00 2.57
2826 5772 6.945435 TCAAATCTTGCCTAAACACAAGGATA 59.055 34.615 3.18 0.00 36.08 2.59
2827 5773 5.774690 TCAAATCTTGCCTAAACACAAGGAT 59.225 36.000 3.18 0.00 36.08 3.24
2958 5910 4.460263 TCAGAAAAGCTACACCAACATGT 58.540 39.130 0.00 0.00 36.56 3.21
2992 5944 5.878116 GGCACCACTTTTAAGTTTCCTTTTT 59.122 36.000 0.00 0.00 37.08 1.94
3003 5955 2.173782 TGACCTCAGGCACCACTTTTAA 59.826 45.455 0.00 0.00 0.00 1.52
3012 5964 4.625800 GTCCATGACCTCAGGCAC 57.374 61.111 0.00 0.00 0.00 5.01
3029 5982 2.480555 GCGGCATCACAACGAAGG 59.519 61.111 0.00 0.00 0.00 3.46
3032 5985 2.089936 GTACGCGGCATCACAACGA 61.090 57.895 12.47 0.00 0.00 3.85
3045 5998 1.245224 CCGCGAATAGATACGTACGC 58.755 55.000 16.72 13.95 42.07 4.42
3055 6008 1.389106 GCCTAATAACGCCGCGAATAG 59.611 52.381 21.79 14.20 0.00 1.73
3056 6009 1.421382 GCCTAATAACGCCGCGAATA 58.579 50.000 21.79 12.34 0.00 1.75
3057 6010 1.554042 CGCCTAATAACGCCGCGAAT 61.554 55.000 21.79 9.63 45.41 3.34
3058 6011 2.232296 CGCCTAATAACGCCGCGAA 61.232 57.895 21.79 7.45 45.41 4.70
3097 6057 0.378257 CCGCAGTACAATGATGGCAC 59.622 55.000 0.00 0.00 0.00 5.01
3108 6068 3.064207 TCAACTTCAATCACCGCAGTAC 58.936 45.455 0.00 0.00 0.00 2.73
3109 6069 3.394674 TCAACTTCAATCACCGCAGTA 57.605 42.857 0.00 0.00 0.00 2.74
3110 6070 2.254546 TCAACTTCAATCACCGCAGT 57.745 45.000 0.00 0.00 0.00 4.40
3111 6071 3.058016 ACATTCAACTTCAATCACCGCAG 60.058 43.478 0.00 0.00 0.00 5.18
3112 6072 2.884012 ACATTCAACTTCAATCACCGCA 59.116 40.909 0.00 0.00 0.00 5.69
3113 6073 3.058293 TCACATTCAACTTCAATCACCGC 60.058 43.478 0.00 0.00 0.00 5.68
3114 6074 4.466828 GTCACATTCAACTTCAATCACCG 58.533 43.478 0.00 0.00 0.00 4.94
3115 6075 4.520492 AGGTCACATTCAACTTCAATCACC 59.480 41.667 0.00 0.00 0.00 4.02
3116 6076 5.335191 GGAGGTCACATTCAACTTCAATCAC 60.335 44.000 0.00 0.00 0.00 3.06
3117 6077 4.761739 GGAGGTCACATTCAACTTCAATCA 59.238 41.667 0.00 0.00 0.00 2.57
3118 6078 4.156739 GGGAGGTCACATTCAACTTCAATC 59.843 45.833 0.00 0.00 0.00 2.67
3119 6079 4.082125 GGGAGGTCACATTCAACTTCAAT 58.918 43.478 0.00 0.00 0.00 2.57
3120 6080 3.117701 TGGGAGGTCACATTCAACTTCAA 60.118 43.478 0.00 0.00 0.00 2.69
3121 6081 2.441375 TGGGAGGTCACATTCAACTTCA 59.559 45.455 0.00 0.00 0.00 3.02
3122 6082 3.140325 TGGGAGGTCACATTCAACTTC 57.860 47.619 0.00 0.00 0.00 3.01
3123 6083 3.222603 GTTGGGAGGTCACATTCAACTT 58.777 45.455 0.00 0.00 33.77 2.66
3124 6084 2.810400 CGTTGGGAGGTCACATTCAACT 60.810 50.000 7.63 0.00 34.22 3.16
3125 6085 1.535462 CGTTGGGAGGTCACATTCAAC 59.465 52.381 0.00 0.00 33.38 3.18
3126 6086 1.418264 TCGTTGGGAGGTCACATTCAA 59.582 47.619 0.00 0.00 0.00 2.69
3127 6087 1.001974 CTCGTTGGGAGGTCACATTCA 59.998 52.381 0.00 0.00 39.22 2.57
3128 6088 1.726853 CTCGTTGGGAGGTCACATTC 58.273 55.000 0.00 0.00 39.22 2.67
3129 6089 0.321653 GCTCGTTGGGAGGTCACATT 60.322 55.000 0.00 0.00 43.36 2.71
3130 6090 1.296715 GCTCGTTGGGAGGTCACAT 59.703 57.895 0.00 0.00 43.36 3.21
3131 6091 1.480212 ATGCTCGTTGGGAGGTCACA 61.480 55.000 0.00 0.00 43.36 3.58
3132 6092 0.741221 GATGCTCGTTGGGAGGTCAC 60.741 60.000 0.00 0.00 43.36 3.67
3133 6093 1.596934 GATGCTCGTTGGGAGGTCA 59.403 57.895 0.00 0.00 43.36 4.02
3134 6094 1.153349 GGATGCTCGTTGGGAGGTC 60.153 63.158 0.00 0.00 43.36 3.85
3135 6095 2.990479 GGATGCTCGTTGGGAGGT 59.010 61.111 0.00 0.00 43.36 3.85
3136 6096 2.202932 CGGATGCTCGTTGGGAGG 60.203 66.667 0.00 0.00 43.36 4.30
3137 6097 2.892425 GCGGATGCTCGTTGGGAG 60.892 66.667 0.00 0.00 46.06 4.30
3138 6098 4.467084 GGCGGATGCTCGTTGGGA 62.467 66.667 0.00 0.00 42.25 4.37
3139 6099 4.776322 TGGCGGATGCTCGTTGGG 62.776 66.667 0.00 0.00 42.25 4.12
3140 6100 3.197790 CTGGCGGATGCTCGTTGG 61.198 66.667 0.00 0.00 42.25 3.77
3141 6101 0.739462 TAACTGGCGGATGCTCGTTG 60.739 55.000 0.00 0.00 42.25 4.10
3142 6102 0.460284 CTAACTGGCGGATGCTCGTT 60.460 55.000 0.00 0.00 42.25 3.85
3143 6103 1.141881 CTAACTGGCGGATGCTCGT 59.858 57.895 0.00 0.00 42.25 4.18
3144 6104 2.240500 GCTAACTGGCGGATGCTCG 61.241 63.158 0.00 0.00 42.25 5.03
3145 6105 0.533755 ATGCTAACTGGCGGATGCTC 60.534 55.000 0.00 0.00 42.25 4.26
3146 6106 0.107017 AATGCTAACTGGCGGATGCT 60.107 50.000 0.00 0.00 42.25 3.79
3147 6107 1.264288 GTAATGCTAACTGGCGGATGC 59.736 52.381 0.00 1.51 41.71 3.91
3148 6108 2.545526 CAGTAATGCTAACTGGCGGATG 59.454 50.000 0.00 0.00 40.56 3.51
3149 6109 2.838736 CAGTAATGCTAACTGGCGGAT 58.161 47.619 0.00 0.00 40.56 4.18
3150 6110 1.742411 GCAGTAATGCTAACTGGCGGA 60.742 52.381 8.13 0.00 43.71 5.54
3151 6111 0.657840 GCAGTAATGCTAACTGGCGG 59.342 55.000 8.13 0.00 43.71 6.13
3152 6112 1.328680 CAGCAGTAATGCTAACTGGCG 59.671 52.381 18.54 0.00 44.30 5.69
3153 6113 2.632377 TCAGCAGTAATGCTAACTGGC 58.368 47.619 18.54 7.47 44.30 4.85
3154 6114 5.449588 CCAAATCAGCAGTAATGCTAACTGG 60.450 44.000 18.54 16.79 44.30 4.00
3155 6115 5.124457 ACCAAATCAGCAGTAATGCTAACTG 59.876 40.000 18.54 12.12 44.30 3.16
3156 6116 5.256474 ACCAAATCAGCAGTAATGCTAACT 58.744 37.500 18.54 2.37 44.30 2.24
3157 6117 5.567138 ACCAAATCAGCAGTAATGCTAAC 57.433 39.130 18.54 0.00 44.30 2.34
3158 6118 7.695480 TTTACCAAATCAGCAGTAATGCTAA 57.305 32.000 18.54 3.20 44.30 3.09
3159 6119 7.695480 TTTTACCAAATCAGCAGTAATGCTA 57.305 32.000 18.54 7.05 44.30 3.49
3191 6151 9.185192 GATTGAAGTTGAATGATCGAAAGTTTT 57.815 29.630 0.00 0.00 0.00 2.43
3192 6152 8.352201 TGATTGAAGTTGAATGATCGAAAGTTT 58.648 29.630 0.00 0.00 0.00 2.66
3193 6153 7.874940 TGATTGAAGTTGAATGATCGAAAGTT 58.125 30.769 0.00 0.00 0.00 2.66
3194 6154 7.439157 TGATTGAAGTTGAATGATCGAAAGT 57.561 32.000 0.00 0.00 0.00 2.66
3195 6155 7.804600 TGTTGATTGAAGTTGAATGATCGAAAG 59.195 33.333 0.00 0.00 0.00 2.62
3196 6156 7.647228 TGTTGATTGAAGTTGAATGATCGAAA 58.353 30.769 0.00 0.00 0.00 3.46
3197 6157 7.200778 TGTTGATTGAAGTTGAATGATCGAA 57.799 32.000 0.00 0.00 0.00 3.71
3198 6158 6.799926 TGTTGATTGAAGTTGAATGATCGA 57.200 33.333 0.00 0.00 0.00 3.59
3199 6159 9.558648 TTATTGTTGATTGAAGTTGAATGATCG 57.441 29.630 0.00 0.00 0.00 3.69
3206 6166 9.681692 CTGATGTTTATTGTTGATTGAAGTTGA 57.318 29.630 0.00 0.00 0.00 3.18
3207 6167 9.681692 TCTGATGTTTATTGTTGATTGAAGTTG 57.318 29.630 0.00 0.00 0.00 3.16
3247 6207 8.915036 ACTAGTTGGTCTATCGAATCTAAATGT 58.085 33.333 0.00 0.00 0.00 2.71
3248 6208 9.186323 CACTAGTTGGTCTATCGAATCTAAATG 57.814 37.037 0.00 0.00 0.00 2.32
3249 6209 9.132923 TCACTAGTTGGTCTATCGAATCTAAAT 57.867 33.333 0.00 0.00 0.00 1.40
3250 6210 8.404000 GTCACTAGTTGGTCTATCGAATCTAAA 58.596 37.037 0.00 0.00 0.00 1.85
3251 6211 7.254692 CGTCACTAGTTGGTCTATCGAATCTAA 60.255 40.741 0.00 0.00 0.00 2.10
3252 6212 6.202379 CGTCACTAGTTGGTCTATCGAATCTA 59.798 42.308 0.00 0.00 0.00 1.98
3253 6213 5.007823 CGTCACTAGTTGGTCTATCGAATCT 59.992 44.000 0.00 0.00 0.00 2.40
3254 6214 5.007430 TCGTCACTAGTTGGTCTATCGAATC 59.993 44.000 0.00 0.00 0.00 2.52
3255 6215 4.880120 TCGTCACTAGTTGGTCTATCGAAT 59.120 41.667 0.00 0.00 0.00 3.34
3256 6216 4.093998 GTCGTCACTAGTTGGTCTATCGAA 59.906 45.833 0.00 0.00 0.00 3.71
3257 6217 3.620374 GTCGTCACTAGTTGGTCTATCGA 59.380 47.826 0.00 0.00 0.00 3.59
3258 6218 3.622163 AGTCGTCACTAGTTGGTCTATCG 59.378 47.826 0.00 0.00 0.00 2.92
3259 6219 5.583854 TGTAGTCGTCACTAGTTGGTCTATC 59.416 44.000 0.00 0.00 35.67 2.08
3260 6220 5.494724 TGTAGTCGTCACTAGTTGGTCTAT 58.505 41.667 0.00 0.00 35.67 1.98
3261 6221 4.898320 TGTAGTCGTCACTAGTTGGTCTA 58.102 43.478 0.00 0.00 35.67 2.59
3262 6222 3.748083 TGTAGTCGTCACTAGTTGGTCT 58.252 45.455 0.00 0.00 35.67 3.85
3263 6223 4.023365 ACTTGTAGTCGTCACTAGTTGGTC 60.023 45.833 0.00 0.00 35.67 4.02
3264 6224 3.887716 ACTTGTAGTCGTCACTAGTTGGT 59.112 43.478 0.00 0.00 35.67 3.67
3265 6225 4.500603 ACTTGTAGTCGTCACTAGTTGG 57.499 45.455 0.00 0.00 35.67 3.77
3266 6226 6.238610 AGTACTTGTAGTCGTCACTAGTTG 57.761 41.667 0.00 0.00 35.67 3.16
3267 6227 7.969536 TTAGTACTTGTAGTCGTCACTAGTT 57.030 36.000 0.00 0.00 35.67 2.24
3268 6228 7.969536 TTTAGTACTTGTAGTCGTCACTAGT 57.030 36.000 0.00 0.00 35.67 2.57
3269 6229 7.476802 CGTTTTAGTACTTGTAGTCGTCACTAG 59.523 40.741 0.00 0.00 35.67 2.57
3270 6230 7.170828 TCGTTTTAGTACTTGTAGTCGTCACTA 59.829 37.037 0.00 0.00 33.62 2.74
3271 6231 6.017934 TCGTTTTAGTACTTGTAGTCGTCACT 60.018 38.462 0.00 0.00 36.55 3.41
3272 6232 6.136071 TCGTTTTAGTACTTGTAGTCGTCAC 58.864 40.000 0.00 0.00 0.00 3.67
3273 6233 6.299023 TCGTTTTAGTACTTGTAGTCGTCA 57.701 37.500 0.00 0.00 0.00 4.35
3274 6234 5.282544 GCTCGTTTTAGTACTTGTAGTCGTC 59.717 44.000 0.00 0.00 0.00 4.20
3275 6235 5.149977 GCTCGTTTTAGTACTTGTAGTCGT 58.850 41.667 0.00 0.00 0.00 4.34
3276 6236 4.556523 GGCTCGTTTTAGTACTTGTAGTCG 59.443 45.833 0.00 0.00 0.00 4.18
3277 6237 4.556523 CGGCTCGTTTTAGTACTTGTAGTC 59.443 45.833 0.00 0.00 0.00 2.59
3278 6238 4.216257 TCGGCTCGTTTTAGTACTTGTAGT 59.784 41.667 0.00 0.00 0.00 2.73
3279 6239 4.726416 TCGGCTCGTTTTAGTACTTGTAG 58.274 43.478 0.00 0.00 0.00 2.74
3280 6240 4.764679 TCGGCTCGTTTTAGTACTTGTA 57.235 40.909 0.00 0.00 0.00 2.41
3281 6241 3.648339 TCGGCTCGTTTTAGTACTTGT 57.352 42.857 0.00 0.00 0.00 3.16
3282 6242 4.089636 GTCTTCGGCTCGTTTTAGTACTTG 59.910 45.833 0.00 0.00 0.00 3.16
3283 6243 4.233005 GTCTTCGGCTCGTTTTAGTACTT 58.767 43.478 0.00 0.00 0.00 2.24
3284 6244 3.669023 CGTCTTCGGCTCGTTTTAGTACT 60.669 47.826 0.00 0.00 0.00 2.73
3285 6245 2.591584 CGTCTTCGGCTCGTTTTAGTAC 59.408 50.000 0.00 0.00 0.00 2.73
3286 6246 2.226437 ACGTCTTCGGCTCGTTTTAGTA 59.774 45.455 0.00 0.00 41.85 1.82
3287 6247 1.000938 ACGTCTTCGGCTCGTTTTAGT 60.001 47.619 0.00 0.00 41.85 2.24
3288 6248 1.385743 CACGTCTTCGGCTCGTTTTAG 59.614 52.381 0.00 0.00 41.85 1.85
3289 6249 1.269206 ACACGTCTTCGGCTCGTTTTA 60.269 47.619 0.00 0.00 41.85 1.52
3290 6250 0.529119 ACACGTCTTCGGCTCGTTTT 60.529 50.000 0.00 0.00 41.85 2.43
3291 6251 0.938168 GACACGTCTTCGGCTCGTTT 60.938 55.000 0.00 0.00 41.85 3.60
3292 6252 1.371389 GACACGTCTTCGGCTCGTT 60.371 57.895 0.00 0.00 41.85 3.85
3293 6253 2.254651 GACACGTCTTCGGCTCGT 59.745 61.111 0.00 0.00 41.85 4.18
3294 6254 2.081212 GTGACACGTCTTCGGCTCG 61.081 63.158 0.00 0.00 41.85 5.03
3295 6255 1.733399 GGTGACACGTCTTCGGCTC 60.733 63.158 0.00 0.00 41.85 4.70
3296 6256 2.338984 GGTGACACGTCTTCGGCT 59.661 61.111 0.00 0.00 41.85 5.52
3297 6257 3.103911 CGGTGACACGTCTTCGGC 61.104 66.667 0.00 0.00 41.85 5.54
3298 6258 2.333938 ACGGTGACACGTCTTCGG 59.666 61.111 13.87 7.74 45.08 4.30
3305 6265 1.800315 GGACGATGACGGTGACACG 60.800 63.158 0.00 0.00 44.46 4.49
3306 6266 1.800315 CGGACGATGACGGTGACAC 60.800 63.158 0.00 0.00 44.46 3.67
3307 6267 2.191354 GACGGACGATGACGGTGACA 62.191 60.000 0.00 0.00 44.46 3.58
3308 6268 1.513586 GACGGACGATGACGGTGAC 60.514 63.158 0.00 0.00 44.46 3.67
3309 6269 2.693762 GGACGGACGATGACGGTGA 61.694 63.158 0.00 0.00 44.46 4.02
3310 6270 2.202570 GGACGGACGATGACGGTG 60.203 66.667 0.00 0.00 44.46 4.94
3311 6271 3.446570 GGGACGGACGATGACGGT 61.447 66.667 0.00 0.00 44.46 4.83
3312 6272 2.707849 AAGGGACGGACGATGACGG 61.708 63.158 0.00 0.00 44.46 4.79
3313 6273 1.516386 CAAGGGACGGACGATGACG 60.516 63.158 0.00 0.00 45.75 4.35
3314 6274 0.037605 AACAAGGGACGGACGATGAC 60.038 55.000 0.00 0.00 0.00 3.06
3315 6275 0.037697 CAACAAGGGACGGACGATGA 60.038 55.000 0.00 0.00 0.00 2.92
3316 6276 1.019278 CCAACAAGGGACGGACGATG 61.019 60.000 0.00 0.00 0.00 3.84
3317 6277 1.295423 CCAACAAGGGACGGACGAT 59.705 57.895 0.00 0.00 0.00 3.73
3318 6278 2.738480 CCAACAAGGGACGGACGA 59.262 61.111 0.00 0.00 0.00 4.20
3327 6287 1.066454 GTTTTGTCCGACCCAACAAGG 59.934 52.381 0.00 0.00 36.78 3.61
3328 6288 2.021457 AGTTTTGTCCGACCCAACAAG 58.979 47.619 10.88 0.00 36.78 3.16
3329 6289 2.131776 AGTTTTGTCCGACCCAACAA 57.868 45.000 10.88 0.00 33.74 2.83
3330 6290 2.131776 AAGTTTTGTCCGACCCAACA 57.868 45.000 10.88 0.00 0.00 3.33
3331 6291 4.037089 ACAATAAGTTTTGTCCGACCCAAC 59.963 41.667 0.00 0.00 34.83 3.77
3332 6292 4.208746 ACAATAAGTTTTGTCCGACCCAA 58.791 39.130 0.00 0.00 34.83 4.12
3333 6293 3.822940 ACAATAAGTTTTGTCCGACCCA 58.177 40.909 0.00 0.00 34.83 4.51
3334 6294 4.999311 ACTACAATAAGTTTTGTCCGACCC 59.001 41.667 6.68 0.00 40.25 4.46
3335 6295 6.870439 ACTACTACAATAAGTTTTGTCCGACC 59.130 38.462 6.68 0.00 40.25 4.79
3336 6296 7.596248 TGACTACTACAATAAGTTTTGTCCGAC 59.404 37.037 6.68 0.00 40.25 4.79
3337 6297 7.660112 TGACTACTACAATAAGTTTTGTCCGA 58.340 34.615 6.68 0.00 40.25 4.55
3338 6298 7.878477 TGACTACTACAATAAGTTTTGTCCG 57.122 36.000 6.68 4.02 40.25 4.79
3345 6305 9.538508 ACGACTTTTTGACTACTACAATAAGTT 57.461 29.630 13.96 2.27 43.61 2.66
3346 6306 9.189723 GACGACTTTTTGACTACTACAATAAGT 57.810 33.333 13.12 13.12 44.95 2.24
3347 6307 8.363755 CGACGACTTTTTGACTACTACAATAAG 58.636 37.037 0.00 0.00 39.90 1.73
3348 6308 7.862372 ACGACGACTTTTTGACTACTACAATAA 59.138 33.333 0.00 0.00 0.00 1.40
3349 6309 7.324375 CACGACGACTTTTTGACTACTACAATA 59.676 37.037 0.00 0.00 0.00 1.90
3350 6310 6.143438 CACGACGACTTTTTGACTACTACAAT 59.857 38.462 0.00 0.00 0.00 2.71
3351 6311 5.456497 CACGACGACTTTTTGACTACTACAA 59.544 40.000 0.00 0.00 0.00 2.41
3352 6312 4.971830 CACGACGACTTTTTGACTACTACA 59.028 41.667 0.00 0.00 0.00 2.74
3353 6313 4.143659 GCACGACGACTTTTTGACTACTAC 60.144 45.833 0.00 0.00 0.00 2.73
3354 6314 3.976942 GCACGACGACTTTTTGACTACTA 59.023 43.478 0.00 0.00 0.00 1.82
3355 6315 2.793232 GCACGACGACTTTTTGACTACT 59.207 45.455 0.00 0.00 0.00 2.57
3356 6316 2.793232 AGCACGACGACTTTTTGACTAC 59.207 45.455 0.00 0.00 0.00 2.73
3357 6317 3.088194 AGCACGACGACTTTTTGACTA 57.912 42.857 0.00 0.00 0.00 2.59
3358 6318 1.935933 AGCACGACGACTTTTTGACT 58.064 45.000 0.00 0.00 0.00 3.41
3359 6319 3.488310 TCTTAGCACGACGACTTTTTGAC 59.512 43.478 0.00 0.00 0.00 3.18
3360 6320 3.488310 GTCTTAGCACGACGACTTTTTGA 59.512 43.478 0.00 0.00 0.00 2.69
3361 6321 3.362693 GGTCTTAGCACGACGACTTTTTG 60.363 47.826 0.00 0.00 32.24 2.44
3362 6322 2.798847 GGTCTTAGCACGACGACTTTTT 59.201 45.455 0.00 0.00 32.24 1.94
3363 6323 2.401351 GGTCTTAGCACGACGACTTTT 58.599 47.619 0.00 0.00 32.24 2.27
3364 6324 1.336609 GGGTCTTAGCACGACGACTTT 60.337 52.381 0.00 0.00 32.24 2.66
3365 6325 0.243095 GGGTCTTAGCACGACGACTT 59.757 55.000 0.00 0.00 32.24 3.01
3366 6326 1.593296 GGGGTCTTAGCACGACGACT 61.593 60.000 0.00 0.59 32.24 4.18
3367 6327 1.153881 GGGGTCTTAGCACGACGAC 60.154 63.158 0.00 0.00 32.24 4.34
3368 6328 0.968901 ATGGGGTCTTAGCACGACGA 60.969 55.000 0.00 0.00 32.24 4.20
3369 6329 0.742505 TATGGGGTCTTAGCACGACG 59.257 55.000 0.00 0.00 32.24 5.12
3370 6330 2.029623 TCTATGGGGTCTTAGCACGAC 58.970 52.381 0.00 0.00 0.00 4.34
3371 6331 2.429610 GTTCTATGGGGTCTTAGCACGA 59.570 50.000 0.00 0.00 0.00 4.35
3372 6332 2.798499 CGTTCTATGGGGTCTTAGCACG 60.798 54.545 0.00 0.00 35.44 5.34
3373 6333 2.429610 TCGTTCTATGGGGTCTTAGCAC 59.570 50.000 0.00 0.00 0.00 4.40
3374 6334 2.693591 CTCGTTCTATGGGGTCTTAGCA 59.306 50.000 0.00 0.00 0.00 3.49
3375 6335 2.546162 GCTCGTTCTATGGGGTCTTAGC 60.546 54.545 0.00 0.00 0.00 3.09
3376 6336 2.287668 CGCTCGTTCTATGGGGTCTTAG 60.288 54.545 0.00 0.00 0.00 2.18
3377 6337 1.679680 CGCTCGTTCTATGGGGTCTTA 59.320 52.381 0.00 0.00 0.00 2.10
3378 6338 0.460311 CGCTCGTTCTATGGGGTCTT 59.540 55.000 0.00 0.00 0.00 3.01
3379 6339 2.017559 GCGCTCGTTCTATGGGGTCT 62.018 60.000 0.00 0.00 0.00 3.85
3380 6340 1.591863 GCGCTCGTTCTATGGGGTC 60.592 63.158 0.00 0.00 0.00 4.46
3381 6341 2.355986 TGCGCTCGTTCTATGGGGT 61.356 57.895 9.73 0.00 0.00 4.95
3382 6342 1.883084 GTGCGCTCGTTCTATGGGG 60.883 63.158 9.73 0.00 0.00 4.96
3383 6343 1.883084 GGTGCGCTCGTTCTATGGG 60.883 63.158 9.73 0.00 0.00 4.00
3384 6344 1.148157 CTGGTGCGCTCGTTCTATGG 61.148 60.000 9.73 0.00 0.00 2.74
3385 6345 0.179137 TCTGGTGCGCTCGTTCTATG 60.179 55.000 9.73 0.00 0.00 2.23
3386 6346 0.530744 TTCTGGTGCGCTCGTTCTAT 59.469 50.000 9.73 0.00 0.00 1.98
3387 6347 0.388134 GTTCTGGTGCGCTCGTTCTA 60.388 55.000 9.73 0.00 0.00 2.10
3388 6348 1.664965 GTTCTGGTGCGCTCGTTCT 60.665 57.895 9.73 0.00 0.00 3.01
3389 6349 1.495584 TTGTTCTGGTGCGCTCGTTC 61.496 55.000 9.73 0.00 0.00 3.95
3390 6350 1.522806 TTGTTCTGGTGCGCTCGTT 60.523 52.632 9.73 0.00 0.00 3.85
3391 6351 2.108157 TTGTTCTGGTGCGCTCGT 59.892 55.556 9.73 0.00 0.00 4.18
3392 6352 1.771073 TTGTTGTTCTGGTGCGCTCG 61.771 55.000 9.73 0.00 0.00 5.03
3393 6353 0.317020 GTTGTTGTTCTGGTGCGCTC 60.317 55.000 9.73 4.47 0.00 5.03
3394 6354 1.724582 GGTTGTTGTTCTGGTGCGCT 61.725 55.000 9.73 0.00 0.00 5.92
3395 6355 1.299089 GGTTGTTGTTCTGGTGCGC 60.299 57.895 0.00 0.00 0.00 6.09
3396 6356 0.029300 CTGGTTGTTGTTCTGGTGCG 59.971 55.000 0.00 0.00 0.00 5.34
3397 6357 0.249031 GCTGGTTGTTGTTCTGGTGC 60.249 55.000 0.00 0.00 0.00 5.01
3398 6358 0.029300 CGCTGGTTGTTGTTCTGGTG 59.971 55.000 0.00 0.00 0.00 4.17
3399 6359 1.724582 GCGCTGGTTGTTGTTCTGGT 61.725 55.000 0.00 0.00 0.00 4.00
3400 6360 1.008538 GCGCTGGTTGTTGTTCTGG 60.009 57.895 0.00 0.00 0.00 3.86
3401 6361 1.008538 GGCGCTGGTTGTTGTTCTG 60.009 57.895 7.64 0.00 0.00 3.02
3402 6362 2.542907 CGGCGCTGGTTGTTGTTCT 61.543 57.895 8.83 0.00 0.00 3.01
3403 6363 1.852067 ATCGGCGCTGGTTGTTGTTC 61.852 55.000 17.88 0.00 0.00 3.18
3404 6364 1.896660 ATCGGCGCTGGTTGTTGTT 60.897 52.632 17.88 0.00 0.00 2.83
3405 6365 2.281484 ATCGGCGCTGGTTGTTGT 60.281 55.556 17.88 0.00 0.00 3.32
3406 6366 1.851021 TTCATCGGCGCTGGTTGTTG 61.851 55.000 17.88 7.01 0.00 3.33
3407 6367 1.169661 TTTCATCGGCGCTGGTTGTT 61.170 50.000 17.88 0.00 0.00 2.83
3408 6368 1.169661 TTTTCATCGGCGCTGGTTGT 61.170 50.000 17.88 0.00 0.00 3.32
3409 6369 0.039617 TTTTTCATCGGCGCTGGTTG 60.040 50.000 17.88 14.56 0.00 3.77
3410 6370 0.887933 ATTTTTCATCGGCGCTGGTT 59.112 45.000 17.88 0.96 0.00 3.67
3411 6371 1.670811 CTATTTTTCATCGGCGCTGGT 59.329 47.619 17.88 6.16 0.00 4.00
3412 6372 1.597937 GCTATTTTTCATCGGCGCTGG 60.598 52.381 17.88 4.31 0.00 4.85
3413 6373 1.746760 GCTATTTTTCATCGGCGCTG 58.253 50.000 10.86 10.86 0.00 5.18
3414 6374 0.304705 CGCTATTTTTCATCGGCGCT 59.695 50.000 7.64 0.00 36.46 5.92
3415 6375 0.027586 ACGCTATTTTTCATCGGCGC 59.972 50.000 0.00 0.00 45.24 6.53
3416 6376 2.792674 TCTACGCTATTTTTCATCGGCG 59.207 45.455 0.00 0.00 46.47 6.46
3417 6377 4.992381 ATCTACGCTATTTTTCATCGGC 57.008 40.909 0.00 0.00 0.00 5.54
3418 6378 6.067305 CGTATCTACGCTATTTTTCATCGG 57.933 41.667 0.00 0.00 43.14 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.