Multiple sequence alignment - TraesCS4B01G237400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G237400 chr4B 100.000 2855 0 0 1 2855 495130274 495133128 0.000000e+00 5273
1 TraesCS4B01G237400 chr7D 92.044 1986 143 9 220 2196 169443921 169441942 0.000000e+00 2778
2 TraesCS4B01G237400 chr7D 90.866 1270 100 7 220 1480 109601093 109599831 0.000000e+00 1688
3 TraesCS4B01G237400 chr2D 91.129 1984 155 10 220 2193 16491726 16489754 0.000000e+00 2669
4 TraesCS4B01G237400 chr3A 90.471 1994 166 13 220 2197 606527579 606529564 0.000000e+00 2608
5 TraesCS4B01G237400 chr3A 91.373 1449 114 5 749 2192 742794398 742795840 0.000000e+00 1973
6 TraesCS4B01G237400 chr2B 90.171 1984 173 13 220 2191 709859276 709857303 0.000000e+00 2564
7 TraesCS4B01G237400 chrUn 88.976 1923 171 19 236 2145 170191477 170189583 0.000000e+00 2338
8 TraesCS4B01G237400 chrUn 90.414 991 80 9 294 1276 94835298 94834315 0.000000e+00 1290
9 TraesCS4B01G237400 chr3B 90.414 1231 100 9 225 1444 64791661 64790438 0.000000e+00 1604
10 TraesCS4B01G237400 chr3B 85.185 135 17 1 123 257 64791804 64791673 4.960000e-28 135
11 TraesCS4B01G237400 chr5A 90.150 1066 102 1 1131 2193 552945948 552944883 0.000000e+00 1384
12 TraesCS4B01G237400 chr2A 90.047 1065 103 1 1131 2192 642222802 642223866 0.000000e+00 1376
13 TraesCS4B01G237400 chr2A 89.962 1066 103 2 1131 2193 729062277 729063341 0.000000e+00 1373
14 TraesCS4B01G237400 chr2A 87.011 870 92 14 219 1077 642221940 642222799 0.000000e+00 961
15 TraesCS4B01G237400 chr6B 88.149 1156 120 10 220 1366 626609308 626610455 0.000000e+00 1360
16 TraesCS4B01G237400 chr1D 89.350 1061 97 9 220 1270 464289398 464290452 0.000000e+00 1319
17 TraesCS4B01G237400 chr4D 90.732 410 18 6 2442 2851 400789828 400790217 1.950000e-146 529
18 TraesCS4B01G237400 chr4D 95.045 222 8 3 2192 2410 400789610 400789831 2.110000e-91 346
19 TraesCS4B01G237400 chr4A 81.832 677 42 35 2192 2853 58561083 58561693 7.110000e-136 494


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G237400 chr4B 495130274 495133128 2854 False 5273.0 5273 100.0000 1 2855 1 chr4B.!!$F1 2854
1 TraesCS4B01G237400 chr7D 169441942 169443921 1979 True 2778.0 2778 92.0440 220 2196 1 chr7D.!!$R2 1976
2 TraesCS4B01G237400 chr7D 109599831 109601093 1262 True 1688.0 1688 90.8660 220 1480 1 chr7D.!!$R1 1260
3 TraesCS4B01G237400 chr2D 16489754 16491726 1972 True 2669.0 2669 91.1290 220 2193 1 chr2D.!!$R1 1973
4 TraesCS4B01G237400 chr3A 606527579 606529564 1985 False 2608.0 2608 90.4710 220 2197 1 chr3A.!!$F1 1977
5 TraesCS4B01G237400 chr3A 742794398 742795840 1442 False 1973.0 1973 91.3730 749 2192 1 chr3A.!!$F2 1443
6 TraesCS4B01G237400 chr2B 709857303 709859276 1973 True 2564.0 2564 90.1710 220 2191 1 chr2B.!!$R1 1971
7 TraesCS4B01G237400 chrUn 170189583 170191477 1894 True 2338.0 2338 88.9760 236 2145 1 chrUn.!!$R2 1909
8 TraesCS4B01G237400 chrUn 94834315 94835298 983 True 1290.0 1290 90.4140 294 1276 1 chrUn.!!$R1 982
9 TraesCS4B01G237400 chr3B 64790438 64791804 1366 True 869.5 1604 87.7995 123 1444 2 chr3B.!!$R1 1321
10 TraesCS4B01G237400 chr5A 552944883 552945948 1065 True 1384.0 1384 90.1500 1131 2193 1 chr5A.!!$R1 1062
11 TraesCS4B01G237400 chr2A 729062277 729063341 1064 False 1373.0 1373 89.9620 1131 2193 1 chr2A.!!$F1 1062
12 TraesCS4B01G237400 chr2A 642221940 642223866 1926 False 1168.5 1376 88.5290 219 2192 2 chr2A.!!$F2 1973
13 TraesCS4B01G237400 chr6B 626609308 626610455 1147 False 1360.0 1360 88.1490 220 1366 1 chr6B.!!$F1 1146
14 TraesCS4B01G237400 chr1D 464289398 464290452 1054 False 1319.0 1319 89.3500 220 1270 1 chr1D.!!$F1 1050
15 TraesCS4B01G237400 chr4D 400789610 400790217 607 False 437.5 529 92.8885 2192 2851 2 chr4D.!!$F1 659
16 TraesCS4B01G237400 chr4A 58561083 58561693 610 False 494.0 494 81.8320 2192 2853 1 chr4A.!!$F1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
431 481 0.036022 TCATGACCGATGCACCACAA 59.964 50.0 0.00 0.0 31.32 3.33 F
604 657 0.243907 ACTTCATCACCGACTGTCCG 59.756 55.0 1.55 0.0 0.00 4.79 F
931 984 0.324285 CCCTCTTTGCAGCTCAGACT 59.676 55.0 0.00 0.0 0.00 3.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1567 1634 0.168128 GCGCAACTGAAACCGCTTAT 59.832 50.0 0.30 0.0 42.83 1.73 R
1834 1903 0.301687 TAGATCGTCGTCGGCGTAAC 59.698 55.0 19.81 11.4 39.49 2.50 R
2440 2523 0.378257 GCACCCATGCGTGAGTTATG 59.622 55.0 14.68 0.0 43.33 1.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.505181 CCCCTAGATGTAGCATGGTAATT 57.495 43.478 6.12 0.00 0.00 1.40
23 24 6.620877 CCCCTAGATGTAGCATGGTAATTA 57.379 41.667 6.12 0.00 0.00 1.40
24 25 6.407202 CCCCTAGATGTAGCATGGTAATTAC 58.593 44.000 6.12 7.09 0.00 1.89
25 26 6.213600 CCCCTAGATGTAGCATGGTAATTACT 59.786 42.308 15.05 6.77 0.00 2.24
26 27 7.099764 CCCTAGATGTAGCATGGTAATTACTG 58.900 42.308 15.05 7.87 0.00 2.74
27 28 7.099764 CCTAGATGTAGCATGGTAATTACTGG 58.900 42.308 15.05 6.22 0.00 4.00
28 29 6.747414 AGATGTAGCATGGTAATTACTGGA 57.253 37.500 15.05 0.88 0.00 3.86
29 30 7.136822 AGATGTAGCATGGTAATTACTGGAA 57.863 36.000 15.05 0.25 0.00 3.53
30 31 7.220030 AGATGTAGCATGGTAATTACTGGAAG 58.780 38.462 15.05 3.33 42.29 3.46
31 32 5.123227 TGTAGCATGGTAATTACTGGAAGC 58.877 41.667 15.05 11.72 37.60 3.86
32 33 4.235079 AGCATGGTAATTACTGGAAGCA 57.765 40.909 15.05 4.25 37.60 3.91
33 34 4.796606 AGCATGGTAATTACTGGAAGCAT 58.203 39.130 15.05 6.31 37.60 3.79
34 35 4.581824 AGCATGGTAATTACTGGAAGCATG 59.418 41.667 15.05 17.08 45.82 4.06
35 36 4.863491 CATGGTAATTACTGGAAGCATGC 58.137 43.478 10.51 10.51 39.91 4.06
36 37 3.961849 TGGTAATTACTGGAAGCATGCA 58.038 40.909 21.98 0.00 37.60 3.96
37 38 3.694072 TGGTAATTACTGGAAGCATGCAC 59.306 43.478 21.98 13.23 37.60 4.57
38 39 3.242739 GGTAATTACTGGAAGCATGCACG 60.243 47.826 21.98 5.35 37.60 5.34
39 40 1.382522 ATTACTGGAAGCATGCACGG 58.617 50.000 21.98 16.40 37.60 4.94
40 41 0.036164 TTACTGGAAGCATGCACGGT 59.964 50.000 21.98 20.99 37.60 4.83
41 42 0.899019 TACTGGAAGCATGCACGGTA 59.101 50.000 21.98 20.00 37.60 4.02
42 43 0.036164 ACTGGAAGCATGCACGGTAA 59.964 50.000 21.98 0.00 37.60 2.85
43 44 0.447801 CTGGAAGCATGCACGGTAAC 59.552 55.000 21.98 3.12 0.00 2.50
71 72 2.643551 CGTAGCATGGGAATTCAACCT 58.356 47.619 7.93 0.00 0.00 3.50
72 73 2.355756 CGTAGCATGGGAATTCAACCTG 59.644 50.000 7.93 4.31 0.00 4.00
73 74 2.905415 AGCATGGGAATTCAACCTGA 57.095 45.000 7.93 0.00 0.00 3.86
74 75 2.450476 AGCATGGGAATTCAACCTGAC 58.550 47.619 7.93 0.87 0.00 3.51
75 76 2.170166 GCATGGGAATTCAACCTGACA 58.830 47.619 7.93 0.00 0.00 3.58
76 77 2.762327 GCATGGGAATTCAACCTGACAT 59.238 45.455 7.93 0.00 0.00 3.06
77 78 3.953612 GCATGGGAATTCAACCTGACATA 59.046 43.478 7.93 0.00 0.00 2.29
78 79 4.037208 GCATGGGAATTCAACCTGACATAG 59.963 45.833 7.93 0.00 0.00 2.23
79 80 3.620488 TGGGAATTCAACCTGACATAGC 58.380 45.455 7.93 0.00 0.00 2.97
80 81 3.010027 TGGGAATTCAACCTGACATAGCA 59.990 43.478 7.93 0.00 0.00 3.49
81 82 4.210331 GGGAATTCAACCTGACATAGCAT 58.790 43.478 7.93 0.00 0.00 3.79
82 83 4.037208 GGGAATTCAACCTGACATAGCATG 59.963 45.833 7.93 0.00 0.00 4.06
83 84 4.883585 GGAATTCAACCTGACATAGCATGA 59.116 41.667 7.93 0.00 0.00 3.07
84 85 5.220931 GGAATTCAACCTGACATAGCATGAC 60.221 44.000 7.93 0.00 0.00 3.06
85 86 3.979101 TCAACCTGACATAGCATGACA 57.021 42.857 0.00 3.07 34.08 3.58
86 87 4.284829 TCAACCTGACATAGCATGACAA 57.715 40.909 0.00 0.00 34.76 3.18
87 88 4.650734 TCAACCTGACATAGCATGACAAA 58.349 39.130 0.00 0.00 34.76 2.83
88 89 5.255687 TCAACCTGACATAGCATGACAAAT 58.744 37.500 0.00 0.00 34.76 2.32
89 90 5.355071 TCAACCTGACATAGCATGACAAATC 59.645 40.000 0.00 0.00 34.76 2.17
90 91 5.108187 ACCTGACATAGCATGACAAATCT 57.892 39.130 0.00 0.00 34.76 2.40
91 92 5.503927 ACCTGACATAGCATGACAAATCTT 58.496 37.500 0.00 0.00 34.76 2.40
92 93 5.587844 ACCTGACATAGCATGACAAATCTTC 59.412 40.000 0.00 0.00 34.76 2.87
93 94 5.587443 CCTGACATAGCATGACAAATCTTCA 59.413 40.000 0.00 0.00 34.76 3.02
94 95 6.094464 CCTGACATAGCATGACAAATCTTCAA 59.906 38.462 0.00 0.00 34.76 2.69
95 96 6.845302 TGACATAGCATGACAAATCTTCAAC 58.155 36.000 0.00 0.00 32.34 3.18
96 97 6.430616 TGACATAGCATGACAAATCTTCAACA 59.569 34.615 0.00 0.00 32.34 3.33
97 98 7.121611 TGACATAGCATGACAAATCTTCAACAT 59.878 33.333 0.00 0.00 32.34 2.71
98 99 7.255569 ACATAGCATGACAAATCTTCAACATG 58.744 34.615 0.00 0.00 38.33 3.21
99 100 5.717078 AGCATGACAAATCTTCAACATGT 57.283 34.783 0.00 0.00 37.83 3.21
100 101 5.466819 AGCATGACAAATCTTCAACATGTG 58.533 37.500 0.00 0.00 37.83 3.21
101 102 4.624024 GCATGACAAATCTTCAACATGTGG 59.376 41.667 0.00 0.00 37.83 4.17
102 103 4.241590 TGACAAATCTTCAACATGTGGC 57.758 40.909 0.00 0.00 0.00 5.01
103 104 3.890756 TGACAAATCTTCAACATGTGGCT 59.109 39.130 0.00 0.00 0.00 4.75
104 105 4.022935 TGACAAATCTTCAACATGTGGCTC 60.023 41.667 0.00 0.00 0.00 4.70
105 106 3.058016 ACAAATCTTCAACATGTGGCTCG 60.058 43.478 0.00 0.00 0.00 5.03
106 107 2.479566 ATCTTCAACATGTGGCTCGT 57.520 45.000 0.00 0.00 0.00 4.18
107 108 1.511850 TCTTCAACATGTGGCTCGTG 58.488 50.000 0.00 7.20 38.86 4.35
108 109 0.110056 CTTCAACATGTGGCTCGTGC 60.110 55.000 0.00 0.00 36.60 5.34
119 120 4.056125 CTCGTGCCCGACTGCTCA 62.056 66.667 0.00 0.00 38.40 4.26
120 121 3.573772 CTCGTGCCCGACTGCTCAA 62.574 63.158 0.00 0.00 38.40 3.02
121 122 3.114616 CGTGCCCGACTGCTCAAG 61.115 66.667 0.00 0.00 35.63 3.02
194 195 0.464452 TTTAGCTTAGCTCGCCTCCC 59.536 55.000 11.09 0.00 40.44 4.30
223 224 1.692042 CCTGACCATGGCCTCCTCT 60.692 63.158 13.04 0.00 0.00 3.69
284 331 0.755079 CTGCCGATCCAGATCCAGAA 59.245 55.000 7.69 0.00 34.77 3.02
289 336 2.486013 CCGATCCAGATCCAGAATTGCA 60.486 50.000 2.11 0.00 34.40 4.08
292 339 4.277672 CGATCCAGATCCAGAATTGCAAAT 59.722 41.667 1.71 0.00 34.40 2.32
296 343 4.382685 CCAGATCCAGAATTGCAAATTGCT 60.383 41.667 19.34 0.00 45.31 3.91
359 409 3.594747 TTGCCCTGGGATCCCTCCA 62.595 63.158 31.05 18.51 44.08 3.86
431 481 0.036022 TCATGACCGATGCACCACAA 59.964 50.000 0.00 0.00 31.32 3.33
590 643 2.111999 CTTGGCGGAGGACCACTTCA 62.112 60.000 0.00 0.00 36.76 3.02
593 646 1.596934 GCGGAGGACCACTTCATCA 59.403 57.895 0.00 0.00 36.71 3.07
603 656 1.673033 CCACTTCATCACCGACTGTCC 60.673 57.143 1.55 0.00 0.00 4.02
604 657 0.243907 ACTTCATCACCGACTGTCCG 59.756 55.000 1.55 0.00 0.00 4.79
663 716 2.359169 ATGAGCGTGGATGTCCGGT 61.359 57.895 0.00 0.00 39.43 5.28
727 780 4.093291 CTGGCTGCTCCTCGCCTT 62.093 66.667 0.00 0.00 46.42 4.35
755 808 3.801997 CGCCCCCAGCTCCTTCAT 61.802 66.667 0.00 0.00 40.39 2.57
794 847 2.116125 GGGCCTCTGTTGTTGCCT 59.884 61.111 0.84 0.00 43.50 4.75
797 850 0.324943 GGCCTCTGTTGTTGCCTCTA 59.675 55.000 0.00 0.00 40.77 2.43
809 862 0.325577 TGCCTCTATGACTGGGCTCA 60.326 55.000 0.00 0.00 44.36 4.26
837 890 2.026262 GGGTCCCTTGTAGCAAATCTGA 60.026 50.000 0.00 0.00 0.00 3.27
851 904 3.691342 CTGACGCCCCCTGTTCGA 61.691 66.667 0.00 0.00 0.00 3.71
852 905 3.000819 TGACGCCCCCTGTTCGAT 61.001 61.111 0.00 0.00 0.00 3.59
854 907 1.259142 TGACGCCCCCTGTTCGATTA 61.259 55.000 0.00 0.00 0.00 1.75
858 911 1.745827 CGCCCCCTGTTCGATTATGTT 60.746 52.381 0.00 0.00 0.00 2.71
859 912 1.947456 GCCCCCTGTTCGATTATGTTC 59.053 52.381 0.00 0.00 0.00 3.18
860 913 2.210116 CCCCCTGTTCGATTATGTTCG 58.790 52.381 0.00 0.00 40.46 3.95
861 914 2.159014 CCCCCTGTTCGATTATGTTCGA 60.159 50.000 0.00 0.00 45.75 3.71
862 915 2.864343 CCCCTGTTCGATTATGTTCGAC 59.136 50.000 1.77 0.15 46.94 4.20
863 916 2.864343 CCCTGTTCGATTATGTTCGACC 59.136 50.000 1.77 0.00 46.94 4.79
869 922 1.484356 GATTATGTTCGACCCCGACG 58.516 55.000 0.00 0.00 45.50 5.12
890 943 2.177950 GACGAGTCGACCTTGGCTA 58.822 57.895 21.50 0.00 28.66 3.93
931 984 0.324285 CCCTCTTTGCAGCTCAGACT 59.676 55.000 0.00 0.00 0.00 3.24
970 1025 1.305381 AGGCTCTGGTTACCGCTCT 60.305 57.895 0.00 0.00 0.00 4.09
995 1052 1.460689 AGGTCGTTCAACCCCTCCA 60.461 57.895 0.00 0.00 40.42 3.86
1143 1200 0.541063 GGAATTTGGGGAACGGTGGT 60.541 55.000 0.00 0.00 0.00 4.16
1202 1262 2.186384 GTGCGAGCATGAGGAGCT 59.814 61.111 0.00 0.00 46.82 4.09
1337 1404 2.910199 TGTAGTTCTGCATGAGATGGC 58.090 47.619 0.00 0.00 0.00 4.40
1383 1450 2.949451 AGGTTGCTGAGATAGTCACG 57.051 50.000 0.00 0.00 0.00 4.35
1496 1563 1.147600 CCGGGGGCACTACCAATAC 59.852 63.158 0.00 0.00 42.05 1.89
1507 1574 5.109903 GCACTACCAATACGATGTCTTCTT 58.890 41.667 0.00 0.00 0.00 2.52
1567 1634 2.174639 ACCACCTTGTTGGATGAGTTCA 59.825 45.455 0.00 0.00 39.24 3.18
1686 1753 4.392138 GGACGTTTGGATAAGAAGAACAGG 59.608 45.833 0.00 0.00 0.00 4.00
1712 1779 2.161855 CAACATTCCTACTGCCAAGCA 58.838 47.619 0.00 0.00 36.92 3.91
1733 1800 0.875059 GCTGAATATAGGTTGGCGGC 59.125 55.000 0.00 0.00 0.00 6.53
1800 1868 2.158986 CGAGGAGGATGTGCAAGAGAAT 60.159 50.000 0.00 0.00 0.00 2.40
1831 1900 8.311836 ACTCTTATCTTCGGATGTACAAGAAAA 58.688 33.333 0.00 0.00 36.01 2.29
1834 1903 3.991773 TCTTCGGATGTACAAGAAAACGG 59.008 43.478 0.00 0.00 0.00 4.44
1852 1921 1.061570 GTTACGCCGACGACGATCT 59.938 57.895 11.37 0.00 43.93 2.75
1943 2012 4.551702 TCTAGTTGCAGGCATGTTCTTA 57.448 40.909 0.00 0.00 0.00 2.10
1982 2051 1.141254 TGGTCGGGTATGTTGTGTTGT 59.859 47.619 0.00 0.00 0.00 3.32
1995 2064 0.517316 GTGTTGTCGATGGTCTTGGC 59.483 55.000 0.00 0.00 0.00 4.52
2024 2093 0.824109 CCTTGTATCTGGCTCGGACA 59.176 55.000 0.00 0.00 0.00 4.02
2071 2150 1.301479 GTGGTCTTCGCCGGTTTCT 60.301 57.895 1.90 0.00 0.00 2.52
2113 2192 1.569653 TGGTTTTTGGGTCCGGTTTT 58.430 45.000 0.00 0.00 0.00 2.43
2117 2196 1.694844 TTTTGGGTCCGGTTTTCCTC 58.305 50.000 0.00 0.00 37.95 3.71
2212 2291 1.084842 ATGTGGCCTACTTCCCCCT 59.915 57.895 3.32 0.00 0.00 4.79
2247 2330 8.786826 TTTAGTTTGGTAATTCTCGATGATGT 57.213 30.769 0.00 0.00 0.00 3.06
2254 2337 7.666623 TGGTAATTCTCGATGATGTAGCATAA 58.333 34.615 0.00 0.00 0.00 1.90
2326 2409 3.444742 TCCTGAAATGCATCGCAATTTCT 59.555 39.130 0.00 0.00 43.62 2.52
2371 2454 1.396301 GCAGGCGATCTGAACAAGAAG 59.604 52.381 9.87 0.00 46.18 2.85
2379 2462 2.416747 TCTGAACAAGAAGCACATCGG 58.583 47.619 0.00 0.00 29.54 4.18
2381 2464 0.874390 GAACAAGAAGCACATCGGCA 59.126 50.000 0.00 0.00 35.83 5.69
2416 2499 3.430374 CCAACGGTTCAGATTAGTCCGAT 60.430 47.826 8.84 0.00 43.22 4.18
2425 2508 4.122776 CAGATTAGTCCGATTGAACTGGG 58.877 47.826 0.00 0.00 0.00 4.45
2426 2509 3.134804 AGATTAGTCCGATTGAACTGGGG 59.865 47.826 0.00 0.00 0.00 4.96
2427 2510 1.946984 TAGTCCGATTGAACTGGGGT 58.053 50.000 0.00 0.00 0.00 4.95
2428 2511 0.324943 AGTCCGATTGAACTGGGGTG 59.675 55.000 0.00 0.00 0.00 4.61
2429 2512 0.676782 GTCCGATTGAACTGGGGTGG 60.677 60.000 0.00 0.00 0.00 4.61
2430 2513 1.378514 CCGATTGAACTGGGGTGGG 60.379 63.158 0.00 0.00 0.00 4.61
2431 2514 1.378514 CGATTGAACTGGGGTGGGG 60.379 63.158 0.00 0.00 0.00 4.96
2432 2515 1.000359 GATTGAACTGGGGTGGGGG 60.000 63.158 0.00 0.00 0.00 5.40
2433 2516 1.467190 ATTGAACTGGGGTGGGGGA 60.467 57.895 0.00 0.00 0.00 4.81
2434 2517 0.855400 ATTGAACTGGGGTGGGGGAT 60.855 55.000 0.00 0.00 0.00 3.85
2435 2518 1.506028 TTGAACTGGGGTGGGGGATC 61.506 60.000 0.00 0.00 0.00 3.36
2436 2519 1.928567 GAACTGGGGTGGGGGATCA 60.929 63.158 0.00 0.00 0.00 2.92
2437 2520 1.230616 AACTGGGGTGGGGGATCAT 60.231 57.895 0.00 0.00 0.00 2.45
2438 2521 0.047176 AACTGGGGTGGGGGATCATA 59.953 55.000 0.00 0.00 0.00 2.15
2440 2523 1.386772 TGGGGTGGGGGATCATACC 60.387 63.158 0.00 0.00 0.00 2.73
2485 2569 2.362077 ACAAAACTGATGGTGCCAAGAC 59.638 45.455 0.00 0.00 0.00 3.01
2552 2645 3.181487 CCGCCAAAAGCAGCTATAATTGT 60.181 43.478 0.00 0.00 44.04 2.71
2609 2702 1.614903 TGTGTCCTATTCCGTCGTGTT 59.385 47.619 0.00 0.00 0.00 3.32
2683 2776 5.258051 TCGATATGGCTAAAAAGGTTGGTT 58.742 37.500 0.00 0.00 0.00 3.67
2706 2799 1.829096 TCCTGGTGTCGTGGTTCGA 60.829 57.895 0.00 0.00 46.83 3.71
2747 2840 2.525368 TGTCAAGATTGAGGACTCGGA 58.475 47.619 0.00 0.00 37.98 4.55
2812 2916 4.787598 ACACATCGAAAGCAAAAGATCAC 58.212 39.130 0.00 0.00 0.00 3.06
2813 2917 4.275689 ACACATCGAAAGCAAAAGATCACA 59.724 37.500 0.00 0.00 0.00 3.58
2814 2918 4.614284 CACATCGAAAGCAAAAGATCACAC 59.386 41.667 0.00 0.00 0.00 3.82
2815 2919 3.896648 TCGAAAGCAAAAGATCACACC 57.103 42.857 0.00 0.00 0.00 4.16
2818 2922 3.730715 CGAAAGCAAAAGATCACACCAAC 59.269 43.478 0.00 0.00 0.00 3.77
2838 2942 2.300723 ACCAAACGTGTATAGCACCTGA 59.699 45.455 0.00 0.00 44.97 3.86
2853 2957 1.623811 ACCTGAAGTTGCCACTCGTAT 59.376 47.619 0.00 0.00 30.45 3.06
2854 2958 2.271800 CCTGAAGTTGCCACTCGTATC 58.728 52.381 0.00 0.00 30.45 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 6.747414 TCCAGTAATTACCATGCTACATCT 57.253 37.500 12.05 0.00 0.00 2.90
6 7 6.073003 GCTTCCAGTAATTACCATGCTACATC 60.073 42.308 12.05 0.00 0.00 3.06
8 9 5.123227 GCTTCCAGTAATTACCATGCTACA 58.877 41.667 12.05 0.00 0.00 2.74
9 10 5.123227 TGCTTCCAGTAATTACCATGCTAC 58.877 41.667 12.05 0.00 0.00 3.58
10 11 5.366482 TGCTTCCAGTAATTACCATGCTA 57.634 39.130 12.05 0.00 0.00 3.49
11 12 4.235079 TGCTTCCAGTAATTACCATGCT 57.765 40.909 12.05 0.00 0.00 3.79
12 13 4.794003 GCATGCTTCCAGTAATTACCATGC 60.794 45.833 25.62 25.62 44.70 4.06
13 14 4.338964 TGCATGCTTCCAGTAATTACCATG 59.661 41.667 20.33 18.40 33.77 3.66
14 15 4.339247 GTGCATGCTTCCAGTAATTACCAT 59.661 41.667 20.33 4.71 0.00 3.55
15 16 3.694072 GTGCATGCTTCCAGTAATTACCA 59.306 43.478 20.33 2.50 0.00 3.25
16 17 3.242739 CGTGCATGCTTCCAGTAATTACC 60.243 47.826 20.33 0.00 0.00 2.85
17 18 3.242739 CCGTGCATGCTTCCAGTAATTAC 60.243 47.826 20.33 7.57 0.00 1.89
18 19 2.942376 CCGTGCATGCTTCCAGTAATTA 59.058 45.455 20.33 0.00 0.00 1.40
19 20 1.745087 CCGTGCATGCTTCCAGTAATT 59.255 47.619 20.33 0.00 0.00 1.40
20 21 1.340017 ACCGTGCATGCTTCCAGTAAT 60.340 47.619 20.33 0.00 0.00 1.89
21 22 0.036164 ACCGTGCATGCTTCCAGTAA 59.964 50.000 20.33 0.00 0.00 2.24
22 23 0.899019 TACCGTGCATGCTTCCAGTA 59.101 50.000 20.33 10.38 0.00 2.74
23 24 0.036164 TTACCGTGCATGCTTCCAGT 59.964 50.000 20.33 11.35 0.00 4.00
24 25 0.447801 GTTACCGTGCATGCTTCCAG 59.552 55.000 20.33 5.78 0.00 3.86
25 26 1.295357 CGTTACCGTGCATGCTTCCA 61.295 55.000 20.33 0.00 0.00 3.53
26 27 1.423845 CGTTACCGTGCATGCTTCC 59.576 57.895 20.33 5.89 0.00 3.46
36 37 4.772492 TGCTACGCAAAGACGTTACCGT 62.772 50.000 0.00 0.00 45.75 4.83
37 38 0.364515 GCTACGCAAAGACGTTACCG 59.635 55.000 0.00 0.00 45.75 4.02
38 39 1.421382 TGCTACGCAAAGACGTTACC 58.579 50.000 0.00 0.00 45.75 2.85
39 40 2.222729 CCATGCTACGCAAAGACGTTAC 60.223 50.000 0.00 0.00 45.75 2.50
40 41 1.996898 CCATGCTACGCAAAGACGTTA 59.003 47.619 0.00 0.00 45.75 3.18
41 42 0.796312 CCATGCTACGCAAAGACGTT 59.204 50.000 0.00 0.00 45.75 3.99
43 44 0.739462 TCCCATGCTACGCAAAGACG 60.739 55.000 0.00 0.00 43.62 4.18
44 45 1.448985 TTCCCATGCTACGCAAAGAC 58.551 50.000 0.00 0.00 43.62 3.01
45 46 2.418368 ATTCCCATGCTACGCAAAGA 57.582 45.000 0.00 0.00 43.62 2.52
46 47 2.423185 TGAATTCCCATGCTACGCAAAG 59.577 45.455 2.27 0.00 43.62 2.77
47 48 2.441410 TGAATTCCCATGCTACGCAAA 58.559 42.857 2.27 0.00 43.62 3.68
48 49 2.121291 TGAATTCCCATGCTACGCAA 57.879 45.000 2.27 0.00 43.62 4.85
49 50 1.742831 GTTGAATTCCCATGCTACGCA 59.257 47.619 2.27 0.00 44.86 5.24
50 51 1.065551 GGTTGAATTCCCATGCTACGC 59.934 52.381 2.27 0.00 0.00 4.42
51 52 2.355756 CAGGTTGAATTCCCATGCTACG 59.644 50.000 2.27 0.00 0.00 3.51
52 53 3.378427 GTCAGGTTGAATTCCCATGCTAC 59.622 47.826 2.27 0.00 0.00 3.58
53 54 3.010027 TGTCAGGTTGAATTCCCATGCTA 59.990 43.478 2.27 0.00 0.00 3.49
54 55 2.225091 TGTCAGGTTGAATTCCCATGCT 60.225 45.455 2.27 0.00 0.00 3.79
55 56 2.170166 TGTCAGGTTGAATTCCCATGC 58.830 47.619 2.27 0.01 0.00 4.06
56 57 4.037208 GCTATGTCAGGTTGAATTCCCATG 59.963 45.833 2.27 1.90 0.00 3.66
57 58 4.210331 GCTATGTCAGGTTGAATTCCCAT 58.790 43.478 2.27 0.00 0.00 4.00
58 59 3.010027 TGCTATGTCAGGTTGAATTCCCA 59.990 43.478 2.27 0.00 0.00 4.37
59 60 3.620488 TGCTATGTCAGGTTGAATTCCC 58.380 45.455 2.27 0.00 0.00 3.97
60 61 4.883585 TCATGCTATGTCAGGTTGAATTCC 59.116 41.667 2.27 0.00 0.00 3.01
61 62 5.355071 TGTCATGCTATGTCAGGTTGAATTC 59.645 40.000 0.00 0.00 0.00 2.17
62 63 5.255687 TGTCATGCTATGTCAGGTTGAATT 58.744 37.500 0.00 0.00 0.00 2.17
63 64 4.847198 TGTCATGCTATGTCAGGTTGAAT 58.153 39.130 0.00 0.00 0.00 2.57
64 65 4.284829 TGTCATGCTATGTCAGGTTGAA 57.715 40.909 0.00 0.00 0.00 2.69
65 66 3.979101 TGTCATGCTATGTCAGGTTGA 57.021 42.857 0.00 0.00 0.00 3.18
66 67 5.356190 AGATTTGTCATGCTATGTCAGGTTG 59.644 40.000 0.00 0.00 30.49 3.77
67 68 5.503927 AGATTTGTCATGCTATGTCAGGTT 58.496 37.500 0.00 0.00 30.49 3.50
68 69 5.108187 AGATTTGTCATGCTATGTCAGGT 57.892 39.130 0.00 0.00 30.49 4.00
69 70 5.587443 TGAAGATTTGTCATGCTATGTCAGG 59.413 40.000 0.00 0.00 30.49 3.86
70 71 6.673154 TGAAGATTTGTCATGCTATGTCAG 57.327 37.500 0.00 0.00 30.49 3.51
71 72 6.430616 TGTTGAAGATTTGTCATGCTATGTCA 59.569 34.615 0.00 0.00 0.00 3.58
72 73 6.845302 TGTTGAAGATTTGTCATGCTATGTC 58.155 36.000 0.00 0.00 0.00 3.06
73 74 6.822667 TGTTGAAGATTTGTCATGCTATGT 57.177 33.333 0.00 0.00 0.00 2.29
74 75 7.220108 CACATGTTGAAGATTTGTCATGCTATG 59.780 37.037 0.00 0.00 36.96 2.23
75 76 7.255569 CACATGTTGAAGATTTGTCATGCTAT 58.744 34.615 0.00 0.00 36.96 2.97
76 77 6.349528 CCACATGTTGAAGATTTGTCATGCTA 60.350 38.462 0.00 0.00 36.96 3.49
77 78 5.466819 CACATGTTGAAGATTTGTCATGCT 58.533 37.500 0.00 0.00 36.96 3.79
78 79 4.624024 CCACATGTTGAAGATTTGTCATGC 59.376 41.667 0.00 0.00 36.96 4.06
79 80 4.624024 GCCACATGTTGAAGATTTGTCATG 59.376 41.667 0.14 0.00 38.65 3.07
80 81 4.525487 AGCCACATGTTGAAGATTTGTCAT 59.475 37.500 0.14 0.00 0.00 3.06
81 82 3.890756 AGCCACATGTTGAAGATTTGTCA 59.109 39.130 0.14 0.00 0.00 3.58
82 83 4.479619 GAGCCACATGTTGAAGATTTGTC 58.520 43.478 0.14 0.00 0.00 3.18
83 84 3.058016 CGAGCCACATGTTGAAGATTTGT 60.058 43.478 0.14 0.00 0.00 2.83
84 85 3.058016 ACGAGCCACATGTTGAAGATTTG 60.058 43.478 0.14 0.00 0.00 2.32
85 86 3.058016 CACGAGCCACATGTTGAAGATTT 60.058 43.478 0.14 0.00 0.00 2.17
86 87 2.485426 CACGAGCCACATGTTGAAGATT 59.515 45.455 0.14 0.00 0.00 2.40
87 88 2.079158 CACGAGCCACATGTTGAAGAT 58.921 47.619 0.14 0.00 0.00 2.40
88 89 1.511850 CACGAGCCACATGTTGAAGA 58.488 50.000 0.14 0.00 0.00 2.87
89 90 0.110056 GCACGAGCCACATGTTGAAG 60.110 55.000 0.14 0.00 33.58 3.02
90 91 1.948508 GCACGAGCCACATGTTGAA 59.051 52.632 0.14 0.00 33.58 2.69
91 92 3.654201 GCACGAGCCACATGTTGA 58.346 55.556 0.14 0.00 33.58 3.18
104 105 3.114616 CTTGAGCAGTCGGGCACG 61.115 66.667 0.00 0.00 42.74 5.34
105 106 3.426568 GCTTGAGCAGTCGGGCAC 61.427 66.667 0.00 0.00 41.59 5.01
106 107 4.704833 GGCTTGAGCAGTCGGGCA 62.705 66.667 5.24 0.00 44.36 5.36
107 108 2.914777 CTAGGCTTGAGCAGTCGGGC 62.915 65.000 5.24 0.00 44.36 6.13
108 109 1.142748 CTAGGCTTGAGCAGTCGGG 59.857 63.158 5.24 0.00 44.36 5.14
109 110 1.520342 GCTAGGCTTGAGCAGTCGG 60.520 63.158 4.40 0.00 44.36 4.79
110 111 0.527385 GAGCTAGGCTTGAGCAGTCG 60.527 60.000 11.61 0.00 42.69 4.18
111 112 0.179086 GGAGCTAGGCTTGAGCAGTC 60.179 60.000 11.61 1.66 42.69 3.51
112 113 1.621672 GGGAGCTAGGCTTGAGCAGT 61.622 60.000 11.61 0.00 42.69 4.40
113 114 1.145819 GGGAGCTAGGCTTGAGCAG 59.854 63.158 11.61 0.00 42.69 4.24
114 115 2.725312 CGGGAGCTAGGCTTGAGCA 61.725 63.158 11.61 0.00 42.69 4.26
115 116 2.107953 CGGGAGCTAGGCTTGAGC 59.892 66.667 0.86 0.86 39.88 4.26
170 171 1.587547 GCGAGCTAAGCTAAAGCCAT 58.412 50.000 15.44 0.71 39.88 4.40
171 172 0.462047 GGCGAGCTAAGCTAAAGCCA 60.462 55.000 15.44 0.00 45.86 4.75
176 177 1.735376 CGGGAGGCGAGCTAAGCTAA 61.735 60.000 12.59 0.00 39.88 3.09
177 178 2.194212 CGGGAGGCGAGCTAAGCTA 61.194 63.158 12.59 0.00 39.88 3.32
178 179 3.532155 CGGGAGGCGAGCTAAGCT 61.532 66.667 12.59 0.00 43.88 3.74
194 195 3.391382 GGTCAGGGGTGGAGGACG 61.391 72.222 0.00 0.00 0.00 4.79
205 206 1.692042 AGAGGAGGCCATGGTCAGG 60.692 63.158 20.74 0.00 0.00 3.86
240 286 2.987355 CTAGGACGGAGGAGAGGGGC 62.987 70.000 0.00 0.00 0.00 5.80
247 294 2.601868 GGGAGCTAGGACGGAGGA 59.398 66.667 0.00 0.00 0.00 3.71
289 336 1.822990 CATCCTCAGCACCAGCAATTT 59.177 47.619 0.00 0.00 45.49 1.82
292 339 0.401356 TTCATCCTCAGCACCAGCAA 59.599 50.000 0.00 0.00 45.49 3.91
296 343 0.247460 CGTCTTCATCCTCAGCACCA 59.753 55.000 0.00 0.00 0.00 4.17
359 409 2.113986 GGTGGTGGCAGCTTGAGT 59.886 61.111 18.53 0.00 0.00 3.41
426 476 2.544685 CTTCTCCGTAGATGCTTGTGG 58.455 52.381 0.00 0.00 0.00 4.17
431 481 0.032017 ACCCCTTCTCCGTAGATGCT 60.032 55.000 0.00 0.00 0.00 3.79
794 847 3.135348 CCTTGAATGAGCCCAGTCATAGA 59.865 47.826 0.00 0.00 45.31 1.98
797 850 1.064166 CCCTTGAATGAGCCCAGTCAT 60.064 52.381 0.00 0.00 45.31 3.06
837 890 0.179056 CATAATCGAACAGGGGGCGT 60.179 55.000 0.00 0.00 0.00 5.68
860 913 4.157958 CTCGTCGTCGTCGGGGTC 62.158 72.222 11.74 0.00 38.33 4.46
861 914 4.996434 ACTCGTCGTCGTCGGGGT 62.996 66.667 15.82 10.24 38.33 4.95
862 915 4.157958 GACTCGTCGTCGTCGGGG 62.158 72.222 15.82 9.69 38.33 5.73
890 943 0.112995 TTCAGCAGCCCCAAATCAGT 59.887 50.000 0.00 0.00 0.00 3.41
970 1025 0.395312 GGTTGAACGACCTCCTCCAA 59.605 55.000 4.14 0.00 36.73 3.53
1129 1186 2.773053 TCCACCACCGTTCCCCAA 60.773 61.111 0.00 0.00 0.00 4.12
1143 1200 1.374947 CGCCAAGGAAGAAGGTCCA 59.625 57.895 0.00 0.00 40.48 4.02
1202 1262 2.811101 CAACAACAAAGGGCGCCA 59.189 55.556 30.85 0.00 0.00 5.69
1311 1378 3.515104 TCTCATGCAGAACTACATCCACA 59.485 43.478 0.00 0.00 0.00 4.17
1337 1404 2.290514 TGCTCCTCCTCACCTTGAATTG 60.291 50.000 0.00 0.00 0.00 2.32
1383 1450 2.759191 TGCTCCATATCATTGCTCGAC 58.241 47.619 0.00 0.00 0.00 4.20
1423 1490 0.469144 ACCTCGCCAACCAAACCATT 60.469 50.000 0.00 0.00 0.00 3.16
1496 1563 1.469940 CCTCGGACCAAGAAGACATCG 60.470 57.143 0.00 0.00 0.00 3.84
1507 1574 2.203788 AAGTGGCTCCTCGGACCA 60.204 61.111 0.00 3.97 0.00 4.02
1567 1634 0.168128 GCGCAACTGAAACCGCTTAT 59.832 50.000 0.30 0.00 42.83 1.73
1686 1753 2.162408 GGCAGTAGGAATGTTGCAGTTC 59.838 50.000 0.00 0.00 38.27 3.01
1712 1779 1.540363 CCGCCAACCTATATTCAGCGT 60.540 52.381 0.00 0.00 40.43 5.07
1733 1800 1.823899 GGCAGTTCCCCATAAGCCG 60.824 63.158 0.00 0.00 31.88 5.52
1800 1868 8.459911 TGTACATCCGAAGATAAGAGTTCATA 57.540 34.615 0.00 0.00 0.00 2.15
1834 1903 0.301687 TAGATCGTCGTCGGCGTAAC 59.698 55.000 19.81 11.40 39.49 2.50
1943 2012 1.750778 CAAGACAACCACTGCAACCTT 59.249 47.619 0.00 0.00 0.00 3.50
1982 2051 3.309582 GAGGGCCAAGACCATCGA 58.690 61.111 6.18 0.00 29.21 3.59
1995 2064 1.227674 GATACAAGGCTGCCGAGGG 60.228 63.158 13.96 6.70 0.00 4.30
2024 2093 1.272769 GACTAGCACTCAAGGGACGTT 59.727 52.381 0.00 0.00 0.00 3.99
2071 2150 6.429692 CCATACATGGCATCGGTTAATTAAGA 59.570 38.462 0.00 0.00 41.75 2.10
2113 2192 2.235402 GAGTTGGTCCGGTTAATGAGGA 59.765 50.000 0.00 0.00 0.00 3.71
2117 2196 3.611766 AGAGAGTTGGTCCGGTTAATG 57.388 47.619 0.00 0.00 0.00 1.90
2247 2330 4.095782 GCGTTTCAGGGATTTGTTATGCTA 59.904 41.667 0.00 0.00 0.00 3.49
2254 2337 3.320541 TGAAATGCGTTTCAGGGATTTGT 59.679 39.130 26.44 0.00 46.49 2.83
2280 2363 9.294030 GGAATTTTGTCATGCTATAACAAAGAG 57.706 33.333 8.95 0.00 42.10 2.85
2326 2409 4.649705 TCCTCCCCCAGTTCGGCA 62.650 66.667 0.00 0.00 0.00 5.69
2371 2454 1.656441 GGAATGGATGCCGATGTGC 59.344 57.895 0.00 0.00 0.00 4.57
2379 2462 2.154462 CGTTGGATAGGGAATGGATGC 58.846 52.381 0.00 0.00 0.00 3.91
2381 2464 2.418669 ACCGTTGGATAGGGAATGGAT 58.581 47.619 0.00 0.00 35.69 3.41
2416 2499 1.467190 ATCCCCCACCCCAGTTCAA 60.467 57.895 0.00 0.00 0.00 2.69
2425 2508 2.986728 AGTTATGGTATGATCCCCCACC 59.013 50.000 0.00 0.00 0.00 4.61
2426 2509 3.650942 TGAGTTATGGTATGATCCCCCAC 59.349 47.826 0.00 0.00 0.00 4.61
2427 2510 3.650942 GTGAGTTATGGTATGATCCCCCA 59.349 47.826 0.00 0.00 0.00 4.96
2428 2511 3.306780 CGTGAGTTATGGTATGATCCCCC 60.307 52.174 0.00 0.00 0.00 5.40
2429 2512 3.864921 GCGTGAGTTATGGTATGATCCCC 60.865 52.174 0.00 0.00 0.00 4.81
2430 2513 3.244078 TGCGTGAGTTATGGTATGATCCC 60.244 47.826 0.00 0.00 0.00 3.85
2431 2514 3.990092 TGCGTGAGTTATGGTATGATCC 58.010 45.455 0.00 0.00 0.00 3.36
2432 2515 4.389992 CCATGCGTGAGTTATGGTATGATC 59.610 45.833 7.72 0.00 40.61 2.92
2433 2516 4.318332 CCATGCGTGAGTTATGGTATGAT 58.682 43.478 7.72 0.00 40.61 2.45
2434 2517 3.494223 CCCATGCGTGAGTTATGGTATGA 60.494 47.826 7.72 0.00 42.52 2.15
2435 2518 2.807967 CCCATGCGTGAGTTATGGTATG 59.192 50.000 7.72 0.00 42.52 2.39
2436 2519 2.438021 ACCCATGCGTGAGTTATGGTAT 59.562 45.455 7.72 0.00 42.52 2.73
2437 2520 1.834896 ACCCATGCGTGAGTTATGGTA 59.165 47.619 7.72 0.00 42.52 3.25
2438 2521 0.618458 ACCCATGCGTGAGTTATGGT 59.382 50.000 7.72 1.64 42.52 3.55
2440 2523 0.378257 GCACCCATGCGTGAGTTATG 59.622 55.000 14.68 0.00 43.33 1.90
2485 2569 6.963242 GCTACAATAATGGATGTATGCAATCG 59.037 38.462 0.00 0.00 32.02 3.34
2683 2776 1.046472 ACCACGACACCAGGACTGAA 61.046 55.000 0.00 0.00 0.00 3.02
2775 2879 3.609475 GATGTGTTAACGAAAACGTGCA 58.391 40.909 0.26 0.00 31.76 4.57
2776 2880 2.643801 CGATGTGTTAACGAAAACGTGC 59.356 45.455 0.26 0.00 31.76 5.34
2777 2881 4.104992 TCGATGTGTTAACGAAAACGTG 57.895 40.909 0.26 0.00 33.20 4.49
2778 2882 4.775440 TTCGATGTGTTAACGAAAACGT 57.225 36.364 0.26 0.00 41.74 3.99
2783 2887 4.797693 TTGCTTTCGATGTGTTAACGAA 57.202 36.364 0.26 0.00 42.70 3.85
2784 2888 4.797693 TTTGCTTTCGATGTGTTAACGA 57.202 36.364 0.26 0.00 0.00 3.85
2785 2889 5.201910 TCTTTTGCTTTCGATGTGTTAACG 58.798 37.500 0.26 0.00 0.00 3.18
2794 2898 3.820467 TGGTGTGATCTTTTGCTTTCGAT 59.180 39.130 0.00 0.00 0.00 3.59
2812 2916 2.809119 TGCTATACACGTTTGGTTGGTG 59.191 45.455 0.00 0.00 37.67 4.17
2813 2917 2.809696 GTGCTATACACGTTTGGTTGGT 59.190 45.455 0.00 0.00 40.07 3.67
2814 2918 3.465122 GTGCTATACACGTTTGGTTGG 57.535 47.619 0.00 0.00 40.07 3.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.