Multiple sequence alignment - TraesCS4B01G237000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G237000 chr4B 100.000 5316 0 0 1 5316 495049541 495054856 0.000000e+00 9817.0
1 TraesCS4B01G237000 chr4B 90.291 103 8 2 1622 1724 582341475 582341575 3.340000e-27 134.0
2 TraesCS4B01G237000 chr4D 90.977 3768 212 42 201 3898 400682240 400685949 0.000000e+00 4957.0
3 TraesCS4B01G237000 chr4D 87.187 718 26 17 3899 4560 400685984 400686691 0.000000e+00 756.0
4 TraesCS4B01G237000 chr4A 89.189 3330 213 50 1294 4560 58534261 58537506 0.000000e+00 4019.0
5 TraesCS4B01G237000 chr4A 94.312 756 37 3 4561 5316 656913391 656912642 0.000000e+00 1153.0
6 TraesCS4B01G237000 chr4A 81.860 1075 117 36 253 1270 58533018 58534071 0.000000e+00 833.0
7 TraesCS4B01G237000 chr4A 86.408 103 13 1 1622 1724 625647650 625647549 1.570000e-20 111.0
8 TraesCS4B01G237000 chr4A 85.437 103 14 1 1622 1724 395046129 395046028 7.280000e-19 106.0
9 TraesCS4B01G237000 chr5B 93.430 761 45 2 4561 5316 543966560 543967320 0.000000e+00 1123.0
10 TraesCS4B01G237000 chr5B 83.505 582 70 8 4560 5133 119163934 119164497 2.190000e-143 520.0
11 TraesCS4B01G237000 chr1B 82.942 639 68 21 4561 5180 678009492 678008876 6.060000e-149 538.0
12 TraesCS4B01G237000 chr3D 84.837 521 39 22 4561 5058 24656863 24657366 6.190000e-134 488.0
13 TraesCS4B01G237000 chr7D 90.576 191 17 1 2090 2280 565592971 565592782 8.840000e-63 252.0
14 TraesCS4B01G237000 chr7D 81.119 143 18 4 1622 1763 161471028 161470894 7.280000e-19 106.0
15 TraesCS4B01G237000 chr2D 87.500 208 25 1 2090 2297 146755371 146755165 6.880000e-59 239.0
16 TraesCS4B01G237000 chr2D 87.500 208 24 2 2090 2297 147135376 147135171 6.880000e-59 239.0
17 TraesCS4B01G237000 chr2D 75.862 232 38 10 3963 4179 313466262 313466490 9.420000e-18 102.0
18 TraesCS4B01G237000 chr2D 96.970 33 1 0 3996 4028 47713313 47713281 7.440000e-04 56.5
19 TraesCS4B01G237000 chr2A 80.797 276 37 11 4558 4817 34480395 34480670 9.030000e-48 202.0
20 TraesCS4B01G237000 chr2A 80.769 234 29 9 4600 4817 34497817 34497584 9.160000e-38 169.0
21 TraesCS4B01G237000 chr2A 81.818 143 17 4 1622 1763 628722933 628722799 1.570000e-20 111.0
22 TraesCS4B01G237000 chr2A 89.474 76 8 0 2220 2295 32808434 32808359 4.380000e-16 97.1
23 TraesCS4B01G237000 chr6B 91.729 133 11 0 2151 2283 495982274 495982406 9.090000e-43 185.0
24 TraesCS4B01G237000 chr6B 95.082 61 3 0 2220 2280 24724830 24724890 4.380000e-16 97.1
25 TraesCS4B01G237000 chr7A 86.000 100 13 1 1622 1721 471567739 471567837 7.280000e-19 106.0
26 TraesCS4B01G237000 chr2B 81.752 137 16 4 1628 1763 799330405 799330277 7.280000e-19 106.0
27 TraesCS4B01G237000 chr5A 89.474 76 8 0 2220 2295 362402201 362402126 4.380000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G237000 chr4B 495049541 495054856 5315 False 9817.0 9817 100.0000 1 5316 1 chr4B.!!$F1 5315
1 TraesCS4B01G237000 chr4D 400682240 400686691 4451 False 2856.5 4957 89.0820 201 4560 2 chr4D.!!$F1 4359
2 TraesCS4B01G237000 chr4A 58533018 58537506 4488 False 2426.0 4019 85.5245 253 4560 2 chr4A.!!$F1 4307
3 TraesCS4B01G237000 chr4A 656912642 656913391 749 True 1153.0 1153 94.3120 4561 5316 1 chr4A.!!$R3 755
4 TraesCS4B01G237000 chr5B 543966560 543967320 760 False 1123.0 1123 93.4300 4561 5316 1 chr5B.!!$F2 755
5 TraesCS4B01G237000 chr5B 119163934 119164497 563 False 520.0 520 83.5050 4560 5133 1 chr5B.!!$F1 573
6 TraesCS4B01G237000 chr1B 678008876 678009492 616 True 538.0 538 82.9420 4561 5180 1 chr1B.!!$R1 619
7 TraesCS4B01G237000 chr3D 24656863 24657366 503 False 488.0 488 84.8370 4561 5058 1 chr3D.!!$F1 497

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 229 0.033011 GAGCCCTCACCTCACCTCTA 60.033 60.0 0.0 0.0 0.00 2.43 F
1249 1342 0.034198 TGTCGAGGATCAAAACCGCA 59.966 50.0 0.0 0.0 33.17 5.69 F
1794 2067 0.323302 TTGCCCACAAGCTCGTCATA 59.677 50.0 0.0 0.0 0.00 2.15 F
2877 3157 0.108424 GGCTCAGAGATGTCAGCGTT 60.108 55.0 0.0 0.0 32.26 4.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2027 2300 0.319040 CGACATCGCTACATCAGGGG 60.319 60.0 0.00 0.00 37.78 4.79 R
2711 2989 0.034670 GCCCTCCTGCTCATGAAAGT 60.035 55.0 0.00 0.00 0.00 2.66 R
3420 3725 0.616395 TGTTACTCTGCGGGATCCCA 60.616 55.0 30.42 11.27 35.37 4.37 R
4772 5186 0.411848 GGGATTTTTGGGTGGAGGGA 59.588 55.0 0.00 0.00 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.859165 ATCGGGAGCAAAAGTCTTGA 57.141 45.000 0.00 0.00 0.00 3.02
20 21 2.169832 TCGGGAGCAAAAGTCTTGAG 57.830 50.000 0.00 0.00 0.00 3.02
21 22 0.519077 CGGGAGCAAAAGTCTTGAGC 59.481 55.000 2.16 2.16 0.00 4.26
22 23 1.879796 CGGGAGCAAAAGTCTTGAGCT 60.880 52.381 10.80 10.80 38.43 4.09
23 24 1.538950 GGGAGCAAAAGTCTTGAGCTG 59.461 52.381 14.70 0.00 35.36 4.24
24 25 2.498167 GGAGCAAAAGTCTTGAGCTGA 58.502 47.619 14.70 0.00 35.36 4.26
25 26 2.225255 GGAGCAAAAGTCTTGAGCTGAC 59.775 50.000 14.70 0.00 35.36 3.51
26 27 3.137533 GAGCAAAAGTCTTGAGCTGACT 58.862 45.455 14.70 0.00 45.55 3.41
27 28 2.877168 AGCAAAAGTCTTGAGCTGACTG 59.123 45.455 6.00 0.00 43.16 3.51
28 29 2.615912 GCAAAAGTCTTGAGCTGACTGT 59.384 45.455 6.00 0.00 43.16 3.55
29 30 3.303659 GCAAAAGTCTTGAGCTGACTGTC 60.304 47.826 6.00 0.00 43.16 3.51
30 31 2.829741 AAGTCTTGAGCTGACTGTCC 57.170 50.000 6.00 0.00 43.16 4.02
31 32 2.008242 AGTCTTGAGCTGACTGTCCT 57.992 50.000 5.17 0.00 42.46 3.85
32 33 1.617850 AGTCTTGAGCTGACTGTCCTG 59.382 52.381 5.17 0.00 42.46 3.86
33 34 1.342819 GTCTTGAGCTGACTGTCCTGT 59.657 52.381 5.17 0.00 0.00 4.00
34 35 2.042464 TCTTGAGCTGACTGTCCTGTT 58.958 47.619 5.17 0.00 0.00 3.16
35 36 2.435805 TCTTGAGCTGACTGTCCTGTTT 59.564 45.455 5.17 0.00 0.00 2.83
36 37 2.245159 TGAGCTGACTGTCCTGTTTG 57.755 50.000 5.17 0.00 0.00 2.93
37 38 1.486310 TGAGCTGACTGTCCTGTTTGT 59.514 47.619 5.17 0.00 0.00 2.83
38 39 2.092968 TGAGCTGACTGTCCTGTTTGTT 60.093 45.455 5.17 0.00 0.00 2.83
39 40 2.545946 GAGCTGACTGTCCTGTTTGTTC 59.454 50.000 5.17 0.00 0.00 3.18
40 41 2.092968 AGCTGACTGTCCTGTTTGTTCA 60.093 45.455 5.17 0.00 0.00 3.18
41 42 2.682856 GCTGACTGTCCTGTTTGTTCAA 59.317 45.455 5.17 0.00 0.00 2.69
42 43 3.316308 GCTGACTGTCCTGTTTGTTCAAT 59.684 43.478 5.17 0.00 0.00 2.57
43 44 4.202050 GCTGACTGTCCTGTTTGTTCAATT 60.202 41.667 5.17 0.00 0.00 2.32
44 45 5.008613 GCTGACTGTCCTGTTTGTTCAATTA 59.991 40.000 5.17 0.00 0.00 1.40
45 46 6.459573 GCTGACTGTCCTGTTTGTTCAATTAA 60.460 38.462 5.17 0.00 0.00 1.40
46 47 7.581213 TGACTGTCCTGTTTGTTCAATTAAT 57.419 32.000 5.17 0.00 0.00 1.40
47 48 7.648142 TGACTGTCCTGTTTGTTCAATTAATC 58.352 34.615 5.17 0.00 0.00 1.75
48 49 6.981722 ACTGTCCTGTTTGTTCAATTAATCC 58.018 36.000 0.00 0.00 0.00 3.01
49 50 6.549364 ACTGTCCTGTTTGTTCAATTAATCCA 59.451 34.615 0.00 0.00 0.00 3.41
50 51 7.069331 ACTGTCCTGTTTGTTCAATTAATCCAA 59.931 33.333 0.00 0.00 0.00 3.53
51 52 7.432869 TGTCCTGTTTGTTCAATTAATCCAAG 58.567 34.615 0.00 0.00 0.00 3.61
52 53 6.366061 GTCCTGTTTGTTCAATTAATCCAAGC 59.634 38.462 0.00 0.00 0.00 4.01
53 54 6.267471 TCCTGTTTGTTCAATTAATCCAAGCT 59.733 34.615 0.00 0.00 0.00 3.74
54 55 6.930722 CCTGTTTGTTCAATTAATCCAAGCTT 59.069 34.615 0.00 0.00 0.00 3.74
55 56 7.442062 CCTGTTTGTTCAATTAATCCAAGCTTT 59.558 33.333 0.00 0.00 0.00 3.51
56 57 9.474920 CTGTTTGTTCAATTAATCCAAGCTTTA 57.525 29.630 0.00 0.00 0.00 1.85
57 58 9.995003 TGTTTGTTCAATTAATCCAAGCTTTAT 57.005 25.926 0.00 0.00 0.00 1.40
61 62 8.934825 TGTTCAATTAATCCAAGCTTTATTTGC 58.065 29.630 0.00 0.00 0.00 3.68
62 63 9.154847 GTTCAATTAATCCAAGCTTTATTTGCT 57.845 29.630 0.00 0.00 43.32 3.91
72 73 5.296813 AGCTTTATTTGCTTAAGGTGACG 57.703 39.130 4.29 0.00 37.52 4.35
73 74 4.156008 AGCTTTATTTGCTTAAGGTGACGG 59.844 41.667 4.29 0.00 37.52 4.79
74 75 4.155280 GCTTTATTTGCTTAAGGTGACGGA 59.845 41.667 4.29 0.00 0.00 4.69
75 76 5.335348 GCTTTATTTGCTTAAGGTGACGGAA 60.335 40.000 4.29 0.00 0.00 4.30
76 77 5.873179 TTATTTGCTTAAGGTGACGGAAG 57.127 39.130 4.29 0.00 0.00 3.46
77 78 3.478857 TTTGCTTAAGGTGACGGAAGA 57.521 42.857 4.29 0.00 0.00 2.87
78 79 3.695830 TTGCTTAAGGTGACGGAAGAT 57.304 42.857 4.29 0.00 0.00 2.40
79 80 3.695830 TGCTTAAGGTGACGGAAGATT 57.304 42.857 4.29 0.00 0.00 2.40
80 81 3.596214 TGCTTAAGGTGACGGAAGATTC 58.404 45.455 4.29 0.00 0.00 2.52
81 82 3.007506 TGCTTAAGGTGACGGAAGATTCA 59.992 43.478 4.29 0.00 0.00 2.57
82 83 3.619038 GCTTAAGGTGACGGAAGATTCAG 59.381 47.826 4.29 0.00 0.00 3.02
83 84 2.770164 AAGGTGACGGAAGATTCAGG 57.230 50.000 0.00 0.00 0.00 3.86
84 85 1.645710 AGGTGACGGAAGATTCAGGT 58.354 50.000 0.00 0.00 0.00 4.00
85 86 2.816411 AGGTGACGGAAGATTCAGGTA 58.184 47.619 0.00 0.00 0.00 3.08
86 87 2.761208 AGGTGACGGAAGATTCAGGTAG 59.239 50.000 0.00 0.00 0.00 3.18
87 88 2.541556 GTGACGGAAGATTCAGGTAGC 58.458 52.381 0.00 0.00 0.00 3.58
88 89 2.166664 GTGACGGAAGATTCAGGTAGCT 59.833 50.000 0.00 0.00 0.00 3.32
89 90 2.427453 TGACGGAAGATTCAGGTAGCTC 59.573 50.000 0.00 0.00 0.00 4.09
90 91 2.427453 GACGGAAGATTCAGGTAGCTCA 59.573 50.000 0.00 0.00 0.00 4.26
91 92 3.034635 ACGGAAGATTCAGGTAGCTCAT 58.965 45.455 0.00 0.00 0.00 2.90
92 93 3.068873 ACGGAAGATTCAGGTAGCTCATC 59.931 47.826 0.00 0.00 0.00 2.92
93 94 3.068732 CGGAAGATTCAGGTAGCTCATCA 59.931 47.826 11.49 0.00 0.00 3.07
94 95 4.376146 GGAAGATTCAGGTAGCTCATCAC 58.624 47.826 11.49 6.44 0.00 3.06
95 96 4.376146 GAAGATTCAGGTAGCTCATCACC 58.624 47.826 11.49 0.00 34.86 4.02
96 97 2.703007 AGATTCAGGTAGCTCATCACCC 59.297 50.000 11.49 0.00 35.25 4.61
97 98 2.254152 TTCAGGTAGCTCATCACCCT 57.746 50.000 0.00 0.00 35.25 4.34
98 99 1.781786 TCAGGTAGCTCATCACCCTC 58.218 55.000 0.00 0.00 35.25 4.30
99 100 1.289231 TCAGGTAGCTCATCACCCTCT 59.711 52.381 0.00 0.00 35.25 3.69
100 101 1.411977 CAGGTAGCTCATCACCCTCTG 59.588 57.143 0.00 0.00 35.25 3.35
101 102 0.105778 GGTAGCTCATCACCCTCTGC 59.894 60.000 0.00 0.00 0.00 4.26
102 103 1.118838 GTAGCTCATCACCCTCTGCT 58.881 55.000 0.00 0.00 34.92 4.24
103 104 1.068434 GTAGCTCATCACCCTCTGCTC 59.932 57.143 0.00 0.00 32.72 4.26
104 105 0.325484 AGCTCATCACCCTCTGCTCT 60.325 55.000 0.00 0.00 0.00 4.09
105 106 0.104671 GCTCATCACCCTCTGCTCTC 59.895 60.000 0.00 0.00 0.00 3.20
106 107 1.482954 CTCATCACCCTCTGCTCTCA 58.517 55.000 0.00 0.00 0.00 3.27
107 108 1.829849 CTCATCACCCTCTGCTCTCAA 59.170 52.381 0.00 0.00 0.00 3.02
108 109 1.552337 TCATCACCCTCTGCTCTCAAC 59.448 52.381 0.00 0.00 0.00 3.18
109 110 1.277273 CATCACCCTCTGCTCTCAACA 59.723 52.381 0.00 0.00 0.00 3.33
110 111 1.649321 TCACCCTCTGCTCTCAACAT 58.351 50.000 0.00 0.00 0.00 2.71
111 112 1.552337 TCACCCTCTGCTCTCAACATC 59.448 52.381 0.00 0.00 0.00 3.06
112 113 1.554160 CACCCTCTGCTCTCAACATCT 59.446 52.381 0.00 0.00 0.00 2.90
113 114 1.554160 ACCCTCTGCTCTCAACATCTG 59.446 52.381 0.00 0.00 0.00 2.90
114 115 1.829849 CCCTCTGCTCTCAACATCTGA 59.170 52.381 0.00 0.00 0.00 3.27
115 116 2.435069 CCCTCTGCTCTCAACATCTGAT 59.565 50.000 0.00 0.00 32.14 2.90
116 117 3.459145 CCTCTGCTCTCAACATCTGATG 58.541 50.000 15.83 15.83 32.14 3.07
118 119 4.099113 CCTCTGCTCTCAACATCTGATGTA 59.901 45.833 22.53 8.26 44.07 2.29
119 120 5.394993 CCTCTGCTCTCAACATCTGATGTAA 60.395 44.000 22.53 13.27 44.07 2.41
120 121 6.041423 TCTGCTCTCAACATCTGATGTAAA 57.959 37.500 22.53 12.95 44.07 2.01
121 122 6.466812 TCTGCTCTCAACATCTGATGTAAAA 58.533 36.000 22.53 10.70 44.07 1.52
122 123 6.936335 TCTGCTCTCAACATCTGATGTAAAAA 59.064 34.615 22.53 9.12 44.07 1.94
123 124 7.118825 TCTGCTCTCAACATCTGATGTAAAAAG 59.881 37.037 22.53 17.44 44.07 2.27
124 125 6.149973 TGCTCTCAACATCTGATGTAAAAAGG 59.850 38.462 22.53 12.57 44.07 3.11
125 126 6.500684 TCTCAACATCTGATGTAAAAAGGC 57.499 37.500 22.53 0.00 44.07 4.35
126 127 5.122239 TCTCAACATCTGATGTAAAAAGGCG 59.878 40.000 22.53 6.95 44.07 5.52
127 128 5.000591 TCAACATCTGATGTAAAAAGGCGA 58.999 37.500 22.53 7.57 44.07 5.54
128 129 5.122239 TCAACATCTGATGTAAAAAGGCGAG 59.878 40.000 22.53 4.64 44.07 5.03
129 130 4.579869 ACATCTGATGTAAAAAGGCGAGT 58.420 39.130 21.10 0.00 42.78 4.18
130 131 5.730550 ACATCTGATGTAAAAAGGCGAGTA 58.269 37.500 21.10 0.00 42.78 2.59
131 132 6.170506 ACATCTGATGTAAAAAGGCGAGTAA 58.829 36.000 21.10 0.00 42.78 2.24
132 133 6.823689 ACATCTGATGTAAAAAGGCGAGTAAT 59.176 34.615 21.10 0.00 42.78 1.89
133 134 6.903883 TCTGATGTAAAAAGGCGAGTAATC 57.096 37.500 0.00 0.00 0.00 1.75
134 135 6.403049 TCTGATGTAAAAAGGCGAGTAATCA 58.597 36.000 0.00 0.00 0.00 2.57
135 136 6.535150 TCTGATGTAAAAAGGCGAGTAATCAG 59.465 38.462 0.00 0.00 39.74 2.90
136 137 4.939509 TGTAAAAAGGCGAGTAATCAGC 57.060 40.909 0.00 0.00 0.00 4.26
137 138 4.320023 TGTAAAAAGGCGAGTAATCAGCA 58.680 39.130 8.71 0.00 0.00 4.41
138 139 4.757657 TGTAAAAAGGCGAGTAATCAGCAA 59.242 37.500 8.71 0.00 0.00 3.91
139 140 5.414454 TGTAAAAAGGCGAGTAATCAGCAAT 59.586 36.000 8.71 0.00 0.00 3.56
140 141 4.361451 AAAAGGCGAGTAATCAGCAATG 57.639 40.909 8.71 0.00 0.00 2.82
141 142 2.698855 AGGCGAGTAATCAGCAATGT 57.301 45.000 8.71 0.00 0.00 2.71
142 143 2.283298 AGGCGAGTAATCAGCAATGTG 58.717 47.619 8.71 0.00 0.00 3.21
143 144 1.331756 GGCGAGTAATCAGCAATGTGG 59.668 52.381 8.71 0.00 0.00 4.17
144 145 1.331756 GCGAGTAATCAGCAATGTGGG 59.668 52.381 0.00 0.00 0.00 4.61
145 146 1.331756 CGAGTAATCAGCAATGTGGGC 59.668 52.381 0.00 0.00 0.00 5.36
146 147 2.368439 GAGTAATCAGCAATGTGGGCA 58.632 47.619 0.00 0.00 0.00 5.36
147 148 2.954318 GAGTAATCAGCAATGTGGGCAT 59.046 45.455 0.00 0.00 36.80 4.40
148 149 4.136796 GAGTAATCAGCAATGTGGGCATA 58.863 43.478 0.00 0.00 34.39 3.14
149 150 4.139786 AGTAATCAGCAATGTGGGCATAG 58.860 43.478 0.00 0.00 34.39 2.23
150 151 3.301794 AATCAGCAATGTGGGCATAGA 57.698 42.857 0.00 0.00 34.39 1.98
151 152 3.520691 ATCAGCAATGTGGGCATAGAT 57.479 42.857 0.00 0.00 34.39 1.98
152 153 4.645863 ATCAGCAATGTGGGCATAGATA 57.354 40.909 0.00 0.00 34.39 1.98
153 154 4.436113 TCAGCAATGTGGGCATAGATAA 57.564 40.909 0.00 0.00 34.39 1.75
154 155 4.790937 TCAGCAATGTGGGCATAGATAAA 58.209 39.130 0.00 0.00 34.39 1.40
155 156 5.387788 TCAGCAATGTGGGCATAGATAAAT 58.612 37.500 0.00 0.00 34.39 1.40
156 157 6.541907 TCAGCAATGTGGGCATAGATAAATA 58.458 36.000 0.00 0.00 34.39 1.40
157 158 7.003482 TCAGCAATGTGGGCATAGATAAATAA 58.997 34.615 0.00 0.00 34.39 1.40
158 159 7.505248 TCAGCAATGTGGGCATAGATAAATAAA 59.495 33.333 0.00 0.00 34.39 1.40
159 160 7.811236 CAGCAATGTGGGCATAGATAAATAAAG 59.189 37.037 0.00 0.00 34.39 1.85
160 161 7.725397 AGCAATGTGGGCATAGATAAATAAAGA 59.275 33.333 0.00 0.00 34.39 2.52
161 162 8.025445 GCAATGTGGGCATAGATAAATAAAGAG 58.975 37.037 0.00 0.00 34.39 2.85
162 163 7.693969 ATGTGGGCATAGATAAATAAAGAGC 57.306 36.000 0.00 0.00 32.73 4.09
163 164 6.841601 TGTGGGCATAGATAAATAAAGAGCT 58.158 36.000 0.00 0.00 0.00 4.09
164 165 7.290061 TGTGGGCATAGATAAATAAAGAGCTT 58.710 34.615 0.00 0.00 0.00 3.74
165 166 7.445402 TGTGGGCATAGATAAATAAAGAGCTTC 59.555 37.037 0.00 0.00 0.00 3.86
166 167 6.942576 TGGGCATAGATAAATAAAGAGCTTCC 59.057 38.462 0.00 0.00 0.00 3.46
167 168 6.942576 GGGCATAGATAAATAAAGAGCTTCCA 59.057 38.462 0.00 0.00 0.00 3.53
168 169 7.120432 GGGCATAGATAAATAAAGAGCTTCCAG 59.880 40.741 0.00 0.00 0.00 3.86
169 170 7.880195 GGCATAGATAAATAAAGAGCTTCCAGA 59.120 37.037 0.00 0.00 0.00 3.86
170 171 9.447157 GCATAGATAAATAAAGAGCTTCCAGAT 57.553 33.333 0.00 0.00 0.00 2.90
192 193 9.739276 CAGATCTGGATAGAGTAGAATAGACTT 57.261 37.037 15.38 0.00 36.14 3.01
193 194 9.739276 AGATCTGGATAGAGTAGAATAGACTTG 57.261 37.037 0.00 0.00 36.14 3.16
194 195 9.515226 GATCTGGATAGAGTAGAATAGACTTGT 57.485 37.037 0.00 0.00 36.14 3.16
195 196 8.684386 TCTGGATAGAGTAGAATAGACTTGTG 57.316 38.462 0.00 0.00 0.00 3.33
196 197 8.275758 TCTGGATAGAGTAGAATAGACTTGTGT 58.724 37.037 0.00 0.00 0.00 3.72
197 198 8.226819 TGGATAGAGTAGAATAGACTTGTGTG 57.773 38.462 0.00 0.00 0.00 3.82
198 199 7.285629 TGGATAGAGTAGAATAGACTTGTGTGG 59.714 40.741 0.00 0.00 0.00 4.17
199 200 7.502895 GGATAGAGTAGAATAGACTTGTGTGGA 59.497 40.741 0.00 0.00 0.00 4.02
227 228 1.305718 GAGCCCTCACCTCACCTCT 60.306 63.158 0.00 0.00 0.00 3.69
228 229 0.033011 GAGCCCTCACCTCACCTCTA 60.033 60.000 0.00 0.00 0.00 2.43
229 230 0.639392 AGCCCTCACCTCACCTCTAT 59.361 55.000 0.00 0.00 0.00 1.98
230 231 1.044611 GCCCTCACCTCACCTCTATC 58.955 60.000 0.00 0.00 0.00 2.08
231 232 1.412361 GCCCTCACCTCACCTCTATCT 60.412 57.143 0.00 0.00 0.00 1.98
232 233 2.158445 GCCCTCACCTCACCTCTATCTA 60.158 54.545 0.00 0.00 0.00 1.98
234 235 4.746466 CCCTCACCTCACCTCTATCTAAT 58.254 47.826 0.00 0.00 0.00 1.73
235 236 5.752332 GCCCTCACCTCACCTCTATCTAATA 60.752 48.000 0.00 0.00 0.00 0.98
236 237 5.949354 CCCTCACCTCACCTCTATCTAATAG 59.051 48.000 0.00 0.00 0.00 1.73
237 238 6.240321 CCCTCACCTCACCTCTATCTAATAGA 60.240 46.154 0.00 0.00 39.46 1.98
251 252 9.562408 TCTATCTAATAGAGTTGTGTGGAGTAG 57.438 37.037 0.00 0.00 36.98 2.57
262 263 8.387190 AGTTGTGTGGAGTAGTAATAAAAACC 57.613 34.615 0.00 0.00 0.00 3.27
342 343 4.462483 ACACCATAAACAAAGCATCGGAAT 59.538 37.500 0.00 0.00 0.00 3.01
388 400 2.031420 CGGAATAGGCGTACGATTCTCA 60.031 50.000 21.65 0.00 40.02 3.27
389 401 3.366070 CGGAATAGGCGTACGATTCTCAT 60.366 47.826 21.65 0.22 40.02 2.90
495 523 2.817396 GCCACCGAGAGAAGCAGC 60.817 66.667 0.00 0.00 0.00 5.25
496 524 2.507992 CCACCGAGAGAAGCAGCG 60.508 66.667 0.00 0.00 0.00 5.18
513 541 4.388499 GGCGGCTTCGGGACAAGA 62.388 66.667 0.00 0.00 0.00 3.02
519 547 0.608640 GCTTCGGGACAAGAGAAGGA 59.391 55.000 6.57 0.00 0.00 3.36
542 570 0.323178 CATTCAGAAGGCAGCCCAGT 60.323 55.000 8.22 0.00 0.00 4.00
601 629 0.391130 CAACTCCGAGAAATCCCGCA 60.391 55.000 1.33 0.00 0.00 5.69
638 667 4.553330 TTGTGTAAGGTGAGATTCCTCC 57.447 45.455 0.00 0.00 38.66 4.30
692 721 1.831652 CGCCTCTCTTTCCTGTGGGT 61.832 60.000 0.00 0.00 0.00 4.51
693 722 0.402121 GCCTCTCTTTCCTGTGGGTT 59.598 55.000 0.00 0.00 0.00 4.11
694 723 1.202940 GCCTCTCTTTCCTGTGGGTTT 60.203 52.381 0.00 0.00 0.00 3.27
695 724 2.784347 CCTCTCTTTCCTGTGGGTTTC 58.216 52.381 0.00 0.00 0.00 2.78
696 725 2.373502 CCTCTCTTTCCTGTGGGTTTCT 59.626 50.000 0.00 0.00 0.00 2.52
713 742 3.569194 TTCTTTTCTGGCCTGTGTGTA 57.431 42.857 3.32 0.00 0.00 2.90
738 774 2.699846 TGGCTGCAGATTTCAGGTTTTT 59.300 40.909 20.43 0.00 32.41 1.94
804 840 3.851077 CTTGAGCTCAGCTGCGCG 61.851 66.667 22.08 0.00 39.88 6.86
849 885 0.666913 GGCTCAGCAATGAATCGCAT 59.333 50.000 0.00 0.00 39.43 4.73
952 1019 4.870426 TGCATTTCTTAGGTAGAAGAAGCG 59.130 41.667 0.00 0.00 44.22 4.68
985 1052 3.043121 GCGTCGGCGGTGGTTTTA 61.043 61.111 13.05 0.00 38.78 1.52
990 1057 1.129811 GTCGGCGGTGGTTTTATTCTG 59.870 52.381 7.21 0.00 0.00 3.02
991 1058 0.179174 CGGCGGTGGTTTTATTCTGC 60.179 55.000 0.00 0.00 0.00 4.26
992 1059 0.885196 GGCGGTGGTTTTATTCTGCA 59.115 50.000 0.00 0.00 34.34 4.41
1020 1090 2.420138 GCTCAGGATGGAGAGCGTA 58.580 57.895 0.00 0.00 46.53 4.42
1068 1138 4.418392 CTCAGCATCAACAGGTAAATTGC 58.582 43.478 0.00 0.00 0.00 3.56
1146 1239 6.378280 AGAGTCAGTTTTCCTGTCAAATTGTT 59.622 34.615 0.00 0.00 42.19 2.83
1154 1247 2.400399 CTGTCAAATTGTTGCAGCAGG 58.600 47.619 2.72 0.00 34.44 4.85
1155 1248 1.142474 GTCAAATTGTTGCAGCAGGC 58.858 50.000 2.72 0.00 45.13 4.85
1174 1267 3.891366 AGGCAATCCAGGGATATTTTTCG 59.109 43.478 0.32 0.00 33.97 3.46
1179 1272 6.615088 CAATCCAGGGATATTTTTCGCTATG 58.385 40.000 0.32 0.00 36.84 2.23
1194 1287 8.909708 TTTTCGCTATGTATCATTTTTCCTTG 57.090 30.769 0.00 0.00 0.00 3.61
1234 1327 4.094294 TCTCTGAACCAGTTTGTTTTGTCG 59.906 41.667 0.00 0.00 32.61 4.35
1248 1341 1.153353 TTGTCGAGGATCAAAACCGC 58.847 50.000 0.00 0.00 33.17 5.68
1249 1342 0.034198 TGTCGAGGATCAAAACCGCA 59.966 50.000 0.00 0.00 33.17 5.69
1368 1629 7.625828 AGGATTATAACAGCACCAGTAAAAC 57.374 36.000 0.00 0.00 0.00 2.43
1471 1734 9.559958 CTCATTTTGGCTTACTACTAACATTTG 57.440 33.333 0.00 0.00 0.00 2.32
1477 1740 7.172342 TGGCTTACTACTAACATTTGAATGGT 58.828 34.615 8.44 4.22 40.70 3.55
1548 1813 7.386573 TGATTGTTTCTTAGTTGCTCGTGATTA 59.613 33.333 0.00 0.00 0.00 1.75
1551 1816 5.718649 TTCTTAGTTGCTCGTGATTATGC 57.281 39.130 0.00 0.00 0.00 3.14
1559 1824 2.743183 GCTCGTGATTATGCCTTGTCCT 60.743 50.000 0.00 0.00 0.00 3.85
1561 1826 3.941483 CTCGTGATTATGCCTTGTCCTTT 59.059 43.478 0.00 0.00 0.00 3.11
1564 1829 4.858692 CGTGATTATGCCTTGTCCTTTTTG 59.141 41.667 0.00 0.00 0.00 2.44
1569 1834 3.799281 TGCCTTGTCCTTTTTGTCTTG 57.201 42.857 0.00 0.00 0.00 3.02
1769 2039 6.273889 TGAGAAATTTAAGGGGTAGGGTAGA 58.726 40.000 0.00 0.00 0.00 2.59
1791 2064 1.444119 TTGTTGCCCACAAGCTCGTC 61.444 55.000 0.00 0.00 40.71 4.20
1794 2067 0.323302 TTGCCCACAAGCTCGTCATA 59.677 50.000 0.00 0.00 0.00 2.15
1825 2098 6.322712 ACAGTATAGGACCAGAGAATCAGTTC 59.677 42.308 0.00 0.00 37.82 3.01
1853 2126 9.109393 ACTGTATGTTTGTTGACATATATGGTC 57.891 33.333 16.96 11.70 42.59 4.02
1885 2158 4.590850 TCGGTTCTGATACTCATGATGG 57.409 45.455 0.00 0.00 0.00 3.51
1926 2199 2.288886 ACACCTGGAGAAGCGACTAAAC 60.289 50.000 0.00 0.00 0.00 2.01
1977 2250 2.887151 AAGCATTAGGTCACAAGCCT 57.113 45.000 0.00 0.00 40.00 4.58
1997 2270 6.147864 GCCTTGTGCTATCCATTTATCAAA 57.852 37.500 0.00 0.00 36.87 2.69
2004 2277 7.611467 TGTGCTATCCATTTATCAAAAGACTGT 59.389 33.333 0.00 0.00 0.00 3.55
2044 2317 1.496060 TTCCCCTGATGTAGCGATGT 58.504 50.000 0.00 0.00 0.00 3.06
2080 2353 8.895845 CAGAAAATTCAGAGTTAAAACACATCG 58.104 33.333 0.00 0.00 0.00 3.84
2082 2355 9.872757 GAAAATTCAGAGTTAAAACACATCGTA 57.127 29.630 0.00 0.00 0.00 3.43
2087 2360 8.771920 TCAGAGTTAAAACACATCGTATTCAT 57.228 30.769 0.00 0.00 0.00 2.57
2277 2555 2.298729 GCAGGCCTTTGACCAACAATTA 59.701 45.455 0.00 0.00 38.36 1.40
2348 2626 1.157870 AGGTCGTTTTCAGGCACACG 61.158 55.000 0.00 0.00 0.00 4.49
2365 2643 2.022129 CGCTCTGAAACTTCGGCGT 61.022 57.895 6.85 0.00 37.95 5.68
2393 2671 0.821711 TCAACCCCAAAGAAGCACCG 60.822 55.000 0.00 0.00 0.00 4.94
2460 2738 2.280628 GCAGCGCTTAATACTGAACCT 58.719 47.619 7.50 0.00 33.10 3.50
2462 2740 3.521560 CAGCGCTTAATACTGAACCTGA 58.478 45.455 7.50 0.00 33.10 3.86
2471 2749 7.094805 GCTTAATACTGAACCTGACATTTCACA 60.095 37.037 0.00 0.00 0.00 3.58
2490 2768 1.878088 CAGCACAATGACAGCAAGACT 59.122 47.619 0.00 0.00 0.00 3.24
2595 2873 6.552445 AGAGCTCTTAAACCATGTCATACT 57.448 37.500 11.45 0.00 0.00 2.12
2613 2891 1.257539 CTTCGCCTCTAACGTTCGTC 58.742 55.000 2.82 0.00 0.00 4.20
2630 2908 4.707030 TCGTCGAGGTACATAACAATGT 57.293 40.909 4.85 0.00 38.49 2.71
2632 2910 3.795101 CGTCGAGGTACATAACAATGTCC 59.205 47.826 0.00 0.00 36.08 4.02
2635 2913 4.042398 CGAGGTACATAACAATGTCCGAG 58.958 47.826 0.00 0.00 36.08 4.63
2638 2916 6.145338 AGGTACATAACAATGTCCGAGTAG 57.855 41.667 0.00 0.00 36.08 2.57
2708 2986 4.277174 CCTGTTGCAATGTTGGTACTAACA 59.723 41.667 24.61 24.61 43.93 2.41
2719 2997 7.433708 TGTTGGTACTAACATCACTTTCATG 57.566 36.000 19.63 0.00 35.75 3.07
2748 3028 0.179119 GCAAGTGCATGGATTCCAGC 60.179 55.000 11.78 14.28 41.59 4.85
2805 3085 4.025040 TGCAGATCATGTTCCTCAAACT 57.975 40.909 0.00 0.00 38.76 2.66
2876 3156 0.969917 AGGCTCAGAGATGTCAGCGT 60.970 55.000 0.00 0.00 32.26 5.07
2877 3157 0.108424 GGCTCAGAGATGTCAGCGTT 60.108 55.000 0.00 0.00 32.26 4.84
2904 3184 2.269241 GCCTTCTTCCCCTCACCG 59.731 66.667 0.00 0.00 0.00 4.94
2982 3262 0.323725 GCCCCAGATGCAGGAAAGAA 60.324 55.000 0.00 0.00 0.00 2.52
2988 3268 3.257624 CCAGATGCAGGAAAGAAAGCTTT 59.742 43.478 12.53 12.53 46.62 3.51
3021 3301 2.158449 GCAGGACAGTTCATTCAGTTCG 59.842 50.000 0.00 0.00 0.00 3.95
3060 3340 7.066163 CAGCAATGTGATTCTGTAATTGAGGTA 59.934 37.037 0.00 0.00 31.34 3.08
3154 3435 3.902261 TTTCATGCCATATCGATGTGC 57.098 42.857 16.03 11.78 32.76 4.57
3156 3437 2.691927 TCATGCCATATCGATGTGCTC 58.308 47.619 16.03 10.34 33.11 4.26
3253 3534 3.561310 CACTTGTTCAGCTGCTAGAAACA 59.439 43.478 9.47 11.31 0.00 2.83
3292 3573 1.149148 AGAACGAAGAAAAGCTCGCC 58.851 50.000 0.00 0.00 0.00 5.54
3469 3775 4.939052 ATGCTGCTTACTAAGGTCGTAT 57.061 40.909 0.00 0.00 0.00 3.06
3471 3777 3.242969 TGCTGCTTACTAAGGTCGTATCG 60.243 47.826 0.00 0.00 0.00 2.92
3529 3835 5.189180 CCTACTCTTCCCCTCTCAAAATTG 58.811 45.833 0.00 0.00 0.00 2.32
3587 3893 0.042581 TCATCAGTGGCCAGAGGGTA 59.957 55.000 5.11 0.00 36.17 3.69
3690 3996 7.822161 TCTCAATTTCTGAACTCCATTTTCA 57.178 32.000 0.00 0.00 32.17 2.69
3722 4028 4.757594 TGGCATTGCAAATAATGGTTCTC 58.242 39.130 11.39 0.00 38.25 2.87
3725 4031 5.464389 GGCATTGCAAATAATGGTTCTCATC 59.536 40.000 11.39 0.00 38.25 2.92
3726 4032 6.044046 GCATTGCAAATAATGGTTCTCATCA 58.956 36.000 1.71 0.00 38.25 3.07
3727 4033 6.200286 GCATTGCAAATAATGGTTCTCATCAG 59.800 38.462 1.71 0.00 38.25 2.90
3728 4034 7.485810 CATTGCAAATAATGGTTCTCATCAGA 58.514 34.615 1.71 0.00 34.44 3.27
3760 4067 2.611224 CCCTTTCAAATTCTGCAGTGGC 60.611 50.000 14.67 0.00 41.68 5.01
3892 4199 0.100682 CTCGGATCCAGTGGTACGTG 59.899 60.000 13.41 9.38 0.00 4.49
3932 4273 1.605710 GCAATAGCGCATGGAACTGAT 59.394 47.619 11.47 0.00 0.00 2.90
3947 4288 0.248661 CTGATGGATCGCGTCGTCTT 60.249 55.000 5.77 0.00 0.00 3.01
4231 4610 3.344703 CCACAACATGGCCTTCAGA 57.655 52.632 3.32 0.00 43.24 3.27
4336 4727 4.105057 TGATCCCATGAACCATGATGATGA 59.895 41.667 8.38 2.59 43.81 2.92
4337 4728 4.734843 TCCCATGAACCATGATGATGAT 57.265 40.909 8.38 0.00 43.81 2.45
4454 4858 0.546747 TGTACAGGGAGAAGGGTGGG 60.547 60.000 0.00 0.00 0.00 4.61
4467 4871 2.368821 GGTGGGTACGGGGCATACA 61.369 63.158 0.00 0.00 0.00 2.29
4567 4981 4.558178 TCGCACGGAAATGTAGAGTAAAA 58.442 39.130 0.00 0.00 0.00 1.52
4575 4989 7.062605 ACGGAAATGTAGAGTAAAATACACACG 59.937 37.037 0.00 0.00 34.88 4.49
4615 5029 0.250295 CCGCTCCAAAACAGTCCTGA 60.250 55.000 0.40 0.00 0.00 3.86
4652 5066 2.500229 CAAAACAGTCCCCATACACGT 58.500 47.619 0.00 0.00 0.00 4.49
4772 5186 3.033909 GAGCCTGGGATAGCCAAATTTT 58.966 45.455 0.00 0.00 35.15 1.82
4944 5361 3.414700 GGCTCGAGGTTGTGCACG 61.415 66.667 15.58 0.00 0.00 5.34
5074 5514 4.083862 GGACTGGAGACCGGGTGC 62.084 72.222 3.30 0.00 33.40 5.01
5079 5519 4.736896 GGAGACCGGGTGCGTGAC 62.737 72.222 3.30 0.00 0.00 3.67
5091 5531 2.734723 CGTGACCCTCGTGCACTG 60.735 66.667 16.19 8.79 0.00 3.66
5101 5546 3.443045 GTGCACTGCGGGAATGGG 61.443 66.667 10.32 0.00 0.00 4.00
5154 5611 2.107750 CGGCGGCTCTGATGTGAT 59.892 61.111 7.61 0.00 0.00 3.06
5163 5620 4.334759 CGGCTCTGATGTGATTGAAGAATT 59.665 41.667 0.00 0.00 0.00 2.17
5164 5621 5.163683 CGGCTCTGATGTGATTGAAGAATTT 60.164 40.000 0.00 0.00 0.00 1.82
5184 5641 9.512588 AGAATTTCTGTAGTTGATCATTCAGTT 57.487 29.630 0.00 0.00 32.27 3.16
5212 5669 6.650807 TGCCTTCTCAAAACTAGTACTTGATG 59.349 38.462 16.60 12.28 0.00 3.07
5252 5709 7.619965 TGAAGATCAGTGGTTGATGTACATAA 58.380 34.615 8.71 0.00 46.51 1.90
5280 5737 5.627499 TCAGAATATTTGTTGTGGCACTC 57.373 39.130 19.83 12.25 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.704572 CTCAAGACTTTTGCTCCCGAT 58.295 47.619 0.00 0.00 0.00 4.18
1 2 1.878102 GCTCAAGACTTTTGCTCCCGA 60.878 52.381 2.83 0.00 0.00 5.14
2 3 0.519077 GCTCAAGACTTTTGCTCCCG 59.481 55.000 2.83 0.00 0.00 5.14
3 4 1.538950 CAGCTCAAGACTTTTGCTCCC 59.461 52.381 8.31 0.00 0.00 4.30
4 5 2.225255 GTCAGCTCAAGACTTTTGCTCC 59.775 50.000 8.31 1.14 33.29 4.70
5 6 3.059051 CAGTCAGCTCAAGACTTTTGCTC 60.059 47.826 2.55 1.06 43.47 4.26
6 7 2.877168 CAGTCAGCTCAAGACTTTTGCT 59.123 45.455 2.55 6.01 43.47 3.91
7 8 2.615912 ACAGTCAGCTCAAGACTTTTGC 59.384 45.455 2.55 1.98 43.47 3.68
8 9 3.249559 GGACAGTCAGCTCAAGACTTTTG 59.750 47.826 2.17 0.00 43.47 2.44
9 10 3.135530 AGGACAGTCAGCTCAAGACTTTT 59.864 43.478 2.17 0.00 43.47 2.27
10 11 2.703007 AGGACAGTCAGCTCAAGACTTT 59.297 45.455 2.17 0.00 43.47 2.66
11 12 2.036992 CAGGACAGTCAGCTCAAGACTT 59.963 50.000 2.17 0.00 43.47 3.01
12 13 1.617850 CAGGACAGTCAGCTCAAGACT 59.382 52.381 2.17 0.00 46.72 3.24
13 14 1.342819 ACAGGACAGTCAGCTCAAGAC 59.657 52.381 2.17 0.00 36.26 3.01
14 15 1.709578 ACAGGACAGTCAGCTCAAGA 58.290 50.000 2.17 0.00 0.00 3.02
15 16 2.540265 AACAGGACAGTCAGCTCAAG 57.460 50.000 2.17 0.00 0.00 3.02
16 17 2.092968 ACAAACAGGACAGTCAGCTCAA 60.093 45.455 2.17 0.00 0.00 3.02
17 18 1.486310 ACAAACAGGACAGTCAGCTCA 59.514 47.619 2.17 0.00 0.00 4.26
18 19 2.246719 ACAAACAGGACAGTCAGCTC 57.753 50.000 2.17 0.00 0.00 4.09
19 20 2.092968 TGAACAAACAGGACAGTCAGCT 60.093 45.455 2.17 0.00 0.00 4.24
20 21 2.288666 TGAACAAACAGGACAGTCAGC 58.711 47.619 2.17 0.00 0.00 4.26
21 22 5.505173 AATTGAACAAACAGGACAGTCAG 57.495 39.130 2.17 0.00 0.00 3.51
22 23 7.255451 GGATTAATTGAACAAACAGGACAGTCA 60.255 37.037 2.17 0.00 0.00 3.41
23 24 7.084486 GGATTAATTGAACAAACAGGACAGTC 58.916 38.462 0.00 0.00 0.00 3.51
24 25 6.549364 TGGATTAATTGAACAAACAGGACAGT 59.451 34.615 0.00 0.00 0.00 3.55
25 26 6.980593 TGGATTAATTGAACAAACAGGACAG 58.019 36.000 0.00 0.00 0.00 3.51
26 27 6.968263 TGGATTAATTGAACAAACAGGACA 57.032 33.333 0.00 0.00 0.00 4.02
27 28 6.366061 GCTTGGATTAATTGAACAAACAGGAC 59.634 38.462 0.00 0.00 0.00 3.85
28 29 6.267471 AGCTTGGATTAATTGAACAAACAGGA 59.733 34.615 0.00 0.00 0.00 3.86
29 30 6.458210 AGCTTGGATTAATTGAACAAACAGG 58.542 36.000 0.00 0.00 0.00 4.00
30 31 7.951530 AAGCTTGGATTAATTGAACAAACAG 57.048 32.000 0.00 0.00 0.00 3.16
31 32 9.995003 ATAAAGCTTGGATTAATTGAACAAACA 57.005 25.926 0.00 0.00 0.00 2.83
35 36 8.934825 GCAAATAAAGCTTGGATTAATTGAACA 58.065 29.630 0.00 0.00 28.02 3.18
36 37 9.154847 AGCAAATAAAGCTTGGATTAATTGAAC 57.845 29.630 0.00 0.00 39.87 3.18
50 51 4.156008 CCGTCACCTTAAGCAAATAAAGCT 59.844 41.667 0.00 0.00 45.97 3.74
51 52 4.155280 TCCGTCACCTTAAGCAAATAAAGC 59.845 41.667 0.00 0.00 0.00 3.51
52 53 5.873179 TCCGTCACCTTAAGCAAATAAAG 57.127 39.130 0.00 0.00 0.00 1.85
53 54 5.998981 TCTTCCGTCACCTTAAGCAAATAAA 59.001 36.000 0.00 0.00 0.00 1.40
54 55 5.553123 TCTTCCGTCACCTTAAGCAAATAA 58.447 37.500 0.00 0.00 0.00 1.40
55 56 5.155278 TCTTCCGTCACCTTAAGCAAATA 57.845 39.130 0.00 0.00 0.00 1.40
56 57 4.015872 TCTTCCGTCACCTTAAGCAAAT 57.984 40.909 0.00 0.00 0.00 2.32
57 58 3.478857 TCTTCCGTCACCTTAAGCAAA 57.521 42.857 0.00 0.00 0.00 3.68
58 59 3.695830 ATCTTCCGTCACCTTAAGCAA 57.304 42.857 0.00 0.00 0.00 3.91
59 60 3.007506 TGAATCTTCCGTCACCTTAAGCA 59.992 43.478 0.00 0.00 0.00 3.91
60 61 3.596214 TGAATCTTCCGTCACCTTAAGC 58.404 45.455 0.00 0.00 0.00 3.09
61 62 4.184629 CCTGAATCTTCCGTCACCTTAAG 58.815 47.826 0.00 0.00 0.00 1.85
62 63 3.581332 ACCTGAATCTTCCGTCACCTTAA 59.419 43.478 0.00 0.00 0.00 1.85
63 64 3.170717 ACCTGAATCTTCCGTCACCTTA 58.829 45.455 0.00 0.00 0.00 2.69
64 65 1.978580 ACCTGAATCTTCCGTCACCTT 59.021 47.619 0.00 0.00 0.00 3.50
65 66 1.645710 ACCTGAATCTTCCGTCACCT 58.354 50.000 0.00 0.00 0.00 4.00
66 67 2.738964 GCTACCTGAATCTTCCGTCACC 60.739 54.545 0.00 0.00 0.00 4.02
67 68 2.166664 AGCTACCTGAATCTTCCGTCAC 59.833 50.000 0.00 0.00 0.00 3.67
68 69 2.427453 GAGCTACCTGAATCTTCCGTCA 59.573 50.000 0.00 0.00 0.00 4.35
69 70 2.427453 TGAGCTACCTGAATCTTCCGTC 59.573 50.000 0.00 0.00 0.00 4.79
70 71 2.457598 TGAGCTACCTGAATCTTCCGT 58.542 47.619 0.00 0.00 0.00 4.69
71 72 3.068732 TGATGAGCTACCTGAATCTTCCG 59.931 47.826 0.00 0.00 0.00 4.30
72 73 4.376146 GTGATGAGCTACCTGAATCTTCC 58.624 47.826 0.00 0.00 0.00 3.46
73 74 4.376146 GGTGATGAGCTACCTGAATCTTC 58.624 47.826 0.00 0.00 34.11 2.87
74 75 3.135530 GGGTGATGAGCTACCTGAATCTT 59.864 47.826 3.45 0.00 37.15 2.40
75 76 2.703007 GGGTGATGAGCTACCTGAATCT 59.297 50.000 3.45 0.00 37.15 2.40
76 77 2.703007 AGGGTGATGAGCTACCTGAATC 59.297 50.000 3.45 0.00 37.15 2.52
77 78 2.703007 GAGGGTGATGAGCTACCTGAAT 59.297 50.000 3.45 0.00 37.15 2.57
78 79 2.111384 GAGGGTGATGAGCTACCTGAA 58.889 52.381 3.45 0.00 37.15 3.02
79 80 1.289231 AGAGGGTGATGAGCTACCTGA 59.711 52.381 3.45 0.00 37.15 3.86
80 81 1.411977 CAGAGGGTGATGAGCTACCTG 59.588 57.143 3.45 0.00 37.15 4.00
81 82 1.786937 CAGAGGGTGATGAGCTACCT 58.213 55.000 3.45 0.00 37.15 3.08
82 83 0.105778 GCAGAGGGTGATGAGCTACC 59.894 60.000 0.00 0.00 36.21 3.18
83 84 1.068434 GAGCAGAGGGTGATGAGCTAC 59.932 57.143 0.00 0.00 31.61 3.58
84 85 1.063341 AGAGCAGAGGGTGATGAGCTA 60.063 52.381 0.00 0.00 31.61 3.32
85 86 0.325484 AGAGCAGAGGGTGATGAGCT 60.325 55.000 0.00 0.00 34.61 4.09
86 87 0.104671 GAGAGCAGAGGGTGATGAGC 59.895 60.000 0.00 0.00 0.00 4.26
87 88 1.482954 TGAGAGCAGAGGGTGATGAG 58.517 55.000 0.00 0.00 0.00 2.90
88 89 1.552337 GTTGAGAGCAGAGGGTGATGA 59.448 52.381 0.00 0.00 0.00 2.92
89 90 1.277273 TGTTGAGAGCAGAGGGTGATG 59.723 52.381 0.00 0.00 0.00 3.07
90 91 1.649321 TGTTGAGAGCAGAGGGTGAT 58.351 50.000 0.00 0.00 0.00 3.06
91 92 1.552337 GATGTTGAGAGCAGAGGGTGA 59.448 52.381 0.00 0.00 0.00 4.02
92 93 1.554160 AGATGTTGAGAGCAGAGGGTG 59.446 52.381 0.00 0.00 0.00 4.61
93 94 1.554160 CAGATGTTGAGAGCAGAGGGT 59.446 52.381 0.00 0.00 0.00 4.34
94 95 1.829849 TCAGATGTTGAGAGCAGAGGG 59.170 52.381 0.00 0.00 0.00 4.30
95 96 3.118702 ACATCAGATGTTGAGAGCAGAGG 60.119 47.826 10.53 0.00 41.63 3.69
96 97 4.126208 ACATCAGATGTTGAGAGCAGAG 57.874 45.455 10.53 0.00 41.63 3.35
97 98 5.665916 TTACATCAGATGTTGAGAGCAGA 57.334 39.130 21.30 0.00 41.63 4.26
98 99 6.732531 TTTTACATCAGATGTTGAGAGCAG 57.267 37.500 21.30 0.00 41.63 4.24
99 100 6.149973 CCTTTTTACATCAGATGTTGAGAGCA 59.850 38.462 21.30 0.00 41.63 4.26
100 101 6.549952 CCTTTTTACATCAGATGTTGAGAGC 58.450 40.000 21.30 0.00 41.63 4.09
101 102 6.549952 GCCTTTTTACATCAGATGTTGAGAG 58.450 40.000 21.30 13.41 41.63 3.20
102 103 5.122239 CGCCTTTTTACATCAGATGTTGAGA 59.878 40.000 21.30 0.19 41.63 3.27
103 104 5.122239 TCGCCTTTTTACATCAGATGTTGAG 59.878 40.000 21.30 12.94 41.63 3.02
104 105 5.000591 TCGCCTTTTTACATCAGATGTTGA 58.999 37.500 21.30 8.14 41.63 3.18
105 106 5.106555 ACTCGCCTTTTTACATCAGATGTTG 60.107 40.000 21.30 7.16 41.63 3.33
106 107 5.003804 ACTCGCCTTTTTACATCAGATGTT 58.996 37.500 21.30 6.10 41.63 2.71
107 108 4.579869 ACTCGCCTTTTTACATCAGATGT 58.420 39.130 20.04 20.04 46.92 3.06
108 109 6.662414 TTACTCGCCTTTTTACATCAGATG 57.338 37.500 9.03 9.03 0.00 2.90
109 110 7.047891 TGATTACTCGCCTTTTTACATCAGAT 58.952 34.615 0.00 0.00 0.00 2.90
110 111 6.403049 TGATTACTCGCCTTTTTACATCAGA 58.597 36.000 0.00 0.00 0.00 3.27
111 112 6.662414 TGATTACTCGCCTTTTTACATCAG 57.338 37.500 0.00 0.00 0.00 2.90
112 113 5.064707 GCTGATTACTCGCCTTTTTACATCA 59.935 40.000 0.00 0.00 0.00 3.07
113 114 5.064707 TGCTGATTACTCGCCTTTTTACATC 59.935 40.000 0.00 0.00 0.00 3.06
114 115 4.941263 TGCTGATTACTCGCCTTTTTACAT 59.059 37.500 0.00 0.00 0.00 2.29
115 116 4.320023 TGCTGATTACTCGCCTTTTTACA 58.680 39.130 0.00 0.00 0.00 2.41
116 117 4.939509 TGCTGATTACTCGCCTTTTTAC 57.060 40.909 0.00 0.00 0.00 2.01
117 118 5.414454 ACATTGCTGATTACTCGCCTTTTTA 59.586 36.000 0.00 0.00 0.00 1.52
118 119 4.218417 ACATTGCTGATTACTCGCCTTTTT 59.782 37.500 0.00 0.00 0.00 1.94
119 120 3.758554 ACATTGCTGATTACTCGCCTTTT 59.241 39.130 0.00 0.00 0.00 2.27
120 121 3.127548 CACATTGCTGATTACTCGCCTTT 59.872 43.478 0.00 0.00 0.00 3.11
121 122 2.679837 CACATTGCTGATTACTCGCCTT 59.320 45.455 0.00 0.00 0.00 4.35
122 123 2.283298 CACATTGCTGATTACTCGCCT 58.717 47.619 0.00 0.00 0.00 5.52
123 124 1.331756 CCACATTGCTGATTACTCGCC 59.668 52.381 0.00 0.00 0.00 5.54
124 125 1.331756 CCCACATTGCTGATTACTCGC 59.668 52.381 0.00 0.00 0.00 5.03
125 126 1.331756 GCCCACATTGCTGATTACTCG 59.668 52.381 0.00 0.00 0.00 4.18
126 127 2.368439 TGCCCACATTGCTGATTACTC 58.632 47.619 0.00 0.00 0.00 2.59
127 128 2.512692 TGCCCACATTGCTGATTACT 57.487 45.000 0.00 0.00 0.00 2.24
128 129 4.136796 TCTATGCCCACATTGCTGATTAC 58.863 43.478 0.00 0.00 37.74 1.89
129 130 4.436113 TCTATGCCCACATTGCTGATTA 57.564 40.909 0.00 0.00 37.74 1.75
130 131 3.301794 TCTATGCCCACATTGCTGATT 57.698 42.857 0.00 0.00 37.74 2.57
131 132 3.520691 ATCTATGCCCACATTGCTGAT 57.479 42.857 0.00 0.00 37.74 2.90
132 133 4.436113 TTATCTATGCCCACATTGCTGA 57.564 40.909 0.00 0.00 37.74 4.26
133 134 5.717078 ATTTATCTATGCCCACATTGCTG 57.283 39.130 0.00 0.00 37.74 4.41
134 135 7.725397 TCTTTATTTATCTATGCCCACATTGCT 59.275 33.333 0.00 0.00 37.74 3.91
135 136 7.885297 TCTTTATTTATCTATGCCCACATTGC 58.115 34.615 0.00 0.00 37.74 3.56
136 137 8.025445 GCTCTTTATTTATCTATGCCCACATTG 58.975 37.037 0.00 0.00 37.74 2.82
137 138 7.946776 AGCTCTTTATTTATCTATGCCCACATT 59.053 33.333 0.00 0.00 37.74 2.71
138 139 7.465116 AGCTCTTTATTTATCTATGCCCACAT 58.535 34.615 0.00 0.00 40.49 3.21
139 140 6.841601 AGCTCTTTATTTATCTATGCCCACA 58.158 36.000 0.00 0.00 0.00 4.17
140 141 7.094592 GGAAGCTCTTTATTTATCTATGCCCAC 60.095 40.741 0.00 0.00 0.00 4.61
141 142 6.942576 GGAAGCTCTTTATTTATCTATGCCCA 59.057 38.462 0.00 0.00 0.00 5.36
142 143 6.942576 TGGAAGCTCTTTATTTATCTATGCCC 59.057 38.462 0.00 0.00 0.00 5.36
143 144 7.880195 TCTGGAAGCTCTTTATTTATCTATGCC 59.120 37.037 0.00 0.00 0.00 4.40
144 145 8.839310 TCTGGAAGCTCTTTATTTATCTATGC 57.161 34.615 0.00 0.00 0.00 3.14
166 167 9.739276 AAGTCTATTCTACTCTATCCAGATCTG 57.261 37.037 16.24 16.24 0.00 2.90
167 168 9.739276 CAAGTCTATTCTACTCTATCCAGATCT 57.261 37.037 0.00 0.00 0.00 2.75
168 169 9.515226 ACAAGTCTATTCTACTCTATCCAGATC 57.485 37.037 0.00 0.00 0.00 2.75
169 170 9.295825 CACAAGTCTATTCTACTCTATCCAGAT 57.704 37.037 0.00 0.00 0.00 2.90
170 171 8.275758 ACACAAGTCTATTCTACTCTATCCAGA 58.724 37.037 0.00 0.00 0.00 3.86
171 172 8.349245 CACACAAGTCTATTCTACTCTATCCAG 58.651 40.741 0.00 0.00 0.00 3.86
172 173 7.285629 CCACACAAGTCTATTCTACTCTATCCA 59.714 40.741 0.00 0.00 0.00 3.41
173 174 7.502895 TCCACACAAGTCTATTCTACTCTATCC 59.497 40.741 0.00 0.00 0.00 2.59
174 175 8.453238 TCCACACAAGTCTATTCTACTCTATC 57.547 38.462 0.00 0.00 0.00 2.08
175 176 7.013846 GCTCCACACAAGTCTATTCTACTCTAT 59.986 40.741 0.00 0.00 0.00 1.98
176 177 6.319152 GCTCCACACAAGTCTATTCTACTCTA 59.681 42.308 0.00 0.00 0.00 2.43
177 178 5.126384 GCTCCACACAAGTCTATTCTACTCT 59.874 44.000 0.00 0.00 0.00 3.24
178 179 5.344884 GCTCCACACAAGTCTATTCTACTC 58.655 45.833 0.00 0.00 0.00 2.59
179 180 4.160626 GGCTCCACACAAGTCTATTCTACT 59.839 45.833 0.00 0.00 0.00 2.57
180 181 4.434520 GGCTCCACACAAGTCTATTCTAC 58.565 47.826 0.00 0.00 0.00 2.59
181 182 3.451178 GGGCTCCACACAAGTCTATTCTA 59.549 47.826 0.00 0.00 0.00 2.10
182 183 2.237392 GGGCTCCACACAAGTCTATTCT 59.763 50.000 0.00 0.00 0.00 2.40
183 184 2.633488 GGGCTCCACACAAGTCTATTC 58.367 52.381 0.00 0.00 0.00 1.75
184 185 1.066143 CGGGCTCCACACAAGTCTATT 60.066 52.381 0.00 0.00 0.00 1.73
185 186 0.537188 CGGGCTCCACACAAGTCTAT 59.463 55.000 0.00 0.00 0.00 1.98
186 187 1.972198 CGGGCTCCACACAAGTCTA 59.028 57.895 0.00 0.00 0.00 2.59
187 188 2.743718 CGGGCTCCACACAAGTCT 59.256 61.111 0.00 0.00 0.00 3.24
188 189 3.050275 GCGGGCTCCACACAAGTC 61.050 66.667 0.00 0.00 0.00 3.01
189 190 4.643387 GGCGGGCTCCACACAAGT 62.643 66.667 0.00 0.00 0.00 3.16
208 209 1.610673 GAGGTGAGGTGAGGGCTCA 60.611 63.158 0.00 0.00 37.24 4.26
212 213 2.765689 AGATAGAGGTGAGGTGAGGG 57.234 55.000 0.00 0.00 0.00 4.30
228 229 9.696572 TTACTACTCCACACAACTCTATTAGAT 57.303 33.333 0.00 0.00 0.00 1.98
229 230 9.696572 ATTACTACTCCACACAACTCTATTAGA 57.303 33.333 0.00 0.00 0.00 2.10
235 236 9.269453 GTTTTTATTACTACTCCACACAACTCT 57.731 33.333 0.00 0.00 0.00 3.24
236 237 8.501580 GGTTTTTATTACTACTCCACACAACTC 58.498 37.037 0.00 0.00 0.00 3.01
237 238 8.215736 AGGTTTTTATTACTACTCCACACAACT 58.784 33.333 0.00 0.00 0.00 3.16
238 239 8.387190 AGGTTTTTATTACTACTCCACACAAC 57.613 34.615 0.00 0.00 0.00 3.32
239 240 8.842280 CAAGGTTTTTATTACTACTCCACACAA 58.158 33.333 0.00 0.00 0.00 3.33
241 242 7.040961 TGCAAGGTTTTTATTACTACTCCACAC 60.041 37.037 0.00 0.00 0.00 3.82
242 243 6.999272 TGCAAGGTTTTTATTACTACTCCACA 59.001 34.615 0.00 0.00 0.00 4.17
243 244 7.443259 TGCAAGGTTTTTATTACTACTCCAC 57.557 36.000 0.00 0.00 0.00 4.02
244 245 9.391006 CTATGCAAGGTTTTTATTACTACTCCA 57.609 33.333 0.00 0.00 0.00 3.86
245 246 9.609346 TCTATGCAAGGTTTTTATTACTACTCC 57.391 33.333 0.00 0.00 0.00 3.85
262 263 6.376978 CAACTTCACTCCTTTTCTATGCAAG 58.623 40.000 0.00 0.00 0.00 4.01
342 343 1.754621 CCTCTGCTCTGTCCGGCTA 60.755 63.158 0.00 0.00 0.00 3.93
388 400 3.780626 GGTACCTCCACTGCTCCTATAT 58.219 50.000 4.06 0.00 35.97 0.86
389 401 3.240310 GGTACCTCCACTGCTCCTATA 57.760 52.381 4.06 0.00 35.97 1.31
414 426 1.677637 GCGGGTAAGTGCTAGAGCCT 61.678 60.000 0.00 0.00 41.18 4.58
415 427 1.227292 GCGGGTAAGTGCTAGAGCC 60.227 63.158 0.00 0.00 41.18 4.70
416 428 0.806492 GTGCGGGTAAGTGCTAGAGC 60.806 60.000 0.00 0.00 42.50 4.09
417 429 0.179108 GGTGCGGGTAAGTGCTAGAG 60.179 60.000 0.00 0.00 0.00 2.43
418 430 0.613853 AGGTGCGGGTAAGTGCTAGA 60.614 55.000 0.00 0.00 0.00 2.43
477 505 2.977178 CTGCTTCTCTCGGTGGCT 59.023 61.111 0.00 0.00 0.00 4.75
496 524 4.388499 TCTTGTCCCGAAGCCGCC 62.388 66.667 0.00 0.00 0.00 6.13
499 527 0.391793 CCTTCTCTTGTCCCGAAGCC 60.392 60.000 0.00 0.00 34.33 4.35
503 531 1.893801 GTCTTCCTTCTCTTGTCCCGA 59.106 52.381 0.00 0.00 0.00 5.14
513 541 3.328931 TGCCTTCTGAATGTCTTCCTTCT 59.671 43.478 0.00 0.00 0.00 2.85
519 547 1.615384 GGGCTGCCTTCTGAATGTCTT 60.615 52.381 19.68 0.00 0.00 3.01
542 570 2.485835 CCTAACCAACGAAACCACTGGA 60.486 50.000 0.71 0.00 32.97 3.86
601 629 3.020984 ACACAAAAATCGTCCACAAGGT 58.979 40.909 0.00 0.00 35.89 3.50
692 721 2.733956 ACACACAGGCCAGAAAAGAAA 58.266 42.857 5.01 0.00 0.00 2.52
693 722 2.435372 ACACACAGGCCAGAAAAGAA 57.565 45.000 5.01 0.00 0.00 2.52
694 723 3.569194 TTACACACAGGCCAGAAAAGA 57.431 42.857 5.01 0.00 0.00 2.52
695 724 3.569701 ACATTACACACAGGCCAGAAAAG 59.430 43.478 5.01 0.00 0.00 2.27
696 725 3.317711 CACATTACACACAGGCCAGAAAA 59.682 43.478 5.01 0.00 0.00 2.29
713 742 1.822990 CCTGAAATCTGCAGCCACATT 59.177 47.619 9.47 0.01 32.06 2.71
738 774 2.203480 GGTGAACCCAGCCAAGCA 60.203 61.111 0.00 0.00 34.88 3.91
811 847 2.746671 CTCCACTGCAGCAGCCAG 60.747 66.667 23.05 11.54 41.13 4.85
812 848 3.563224 ACTCCACTGCAGCAGCCA 61.563 61.111 23.05 5.35 41.13 4.75
813 849 3.054503 CACTCCACTGCAGCAGCC 61.055 66.667 23.05 0.00 41.13 4.85
849 885 1.293498 GCGAACCTCTTGGAGCAGA 59.707 57.895 0.00 0.00 37.04 4.26
970 1037 1.129811 CAGAATAAAACCACCGCCGAC 59.870 52.381 0.00 0.00 0.00 4.79
996 1066 3.042871 CTCTCCATCCTGAGCATTAGC 57.957 52.381 0.00 0.00 42.56 3.09
1044 1114 2.113860 TTACCTGTTGATGCTGAGCC 57.886 50.000 0.23 0.00 0.00 4.70
1068 1138 2.094545 GCCATTTTACCTCTGCAACTGG 60.095 50.000 0.00 0.00 0.00 4.00
1080 1150 4.740741 AAAAACAATGGCGCCATTTTAC 57.259 36.364 44.25 11.43 43.32 2.01
1154 1247 3.319122 AGCGAAAAATATCCCTGGATTGC 59.681 43.478 3.59 0.00 36.17 3.56
1155 1248 6.207417 ACATAGCGAAAAATATCCCTGGATTG 59.793 38.462 3.59 0.00 36.17 2.67
1174 1267 6.799512 ACAGCAAGGAAAAATGATACATAGC 58.200 36.000 0.00 0.00 0.00 2.97
1179 1272 9.860898 ATTTTCTACAGCAAGGAAAAATGATAC 57.139 29.630 0.00 0.00 40.64 2.24
1194 1287 5.431765 TCAGAGATGGGAATTTTCTACAGC 58.568 41.667 0.00 0.00 0.00 4.40
1206 1299 2.711009 ACAAACTGGTTCAGAGATGGGA 59.289 45.455 1.59 0.00 35.18 4.37
1234 1327 2.566952 CCAATGCGGTTTTGATCCTC 57.433 50.000 0.00 0.00 0.00 3.71
1446 1707 9.290988 TCAAATGTTAGTAGTAAGCCAAAATGA 57.709 29.630 0.00 0.00 0.00 2.57
1465 1726 4.813809 TGGGCCATATACCATTCAAATGT 58.186 39.130 0.00 0.00 34.60 2.71
1471 1734 4.012374 CTGACATGGGCCATATACCATTC 58.988 47.826 20.73 7.55 44.85 2.67
1477 1740 2.906389 GAGGTCTGACATGGGCCATATA 59.094 50.000 20.73 7.51 0.00 0.86
1548 1813 3.960102 TCAAGACAAAAAGGACAAGGCAT 59.040 39.130 0.00 0.00 0.00 4.40
1551 1816 4.746611 GCATTCAAGACAAAAAGGACAAGG 59.253 41.667 0.00 0.00 0.00 3.61
1559 1824 6.602410 TGGATATGGCATTCAAGACAAAAA 57.398 33.333 4.78 0.00 0.00 1.94
1561 1826 5.069383 CCATGGATATGGCATTCAAGACAAA 59.931 40.000 5.56 0.00 46.84 2.83
1564 1829 4.778534 CCATGGATATGGCATTCAAGAC 57.221 45.455 5.56 0.00 46.84 3.01
1791 2064 6.304624 TCTGGTCCTATACTGTACTGGTATG 58.695 44.000 16.62 9.87 32.85 2.39
1794 2067 4.477581 TCTCTGGTCCTATACTGTACTGGT 59.522 45.833 4.66 1.40 0.00 4.00
1825 2098 8.275632 CCATATATGTCAACAAACATACAGTCG 58.724 37.037 11.73 0.00 43.08 4.18
1853 2126 6.034591 AGTATCAGAACCGAATTGAAGTACG 58.965 40.000 0.00 0.00 0.00 3.67
1885 2158 2.543777 TGGACCTGCAGAAGTAACAC 57.456 50.000 17.39 0.00 0.00 3.32
1911 2184 3.109619 CTGATCGTTTAGTCGCTTCTCC 58.890 50.000 0.00 0.00 0.00 3.71
1926 2199 1.063006 CCGCATGGCAAACTGATCG 59.937 57.895 0.00 0.00 0.00 3.69
1977 2250 8.461222 CAGTCTTTTGATAAATGGATAGCACAA 58.539 33.333 0.00 0.00 0.00 3.33
1987 2260 8.792633 TGGAAGGTAACAGTCTTTTGATAAATG 58.207 33.333 0.00 0.00 41.41 2.32
2027 2300 0.319040 CGACATCGCTACATCAGGGG 60.319 60.000 0.00 0.00 37.78 4.79
2028 2301 0.319040 CCGACATCGCTACATCAGGG 60.319 60.000 0.00 0.00 38.18 4.45
2044 2317 6.467677 ACTCTGAATTTTCTGATTCTTCCGA 58.532 36.000 1.09 0.00 37.04 4.55
2080 2353 8.347771 AGATGTGCATACAACATTCATGAATAC 58.652 33.333 20.32 11.96 40.84 1.89
2082 2355 7.342769 AGATGTGCATACAACATTCATGAAT 57.657 32.000 15.36 15.36 40.84 2.57
2348 2626 0.714439 GTACGCCGAAGTTTCAGAGC 59.286 55.000 0.00 0.00 0.00 4.09
2365 2643 4.627284 TCTTTGGGGTTGAGAAATCGTA 57.373 40.909 0.00 0.00 0.00 3.43
2393 2671 2.401766 CGGCTGGACTGCACCAATC 61.402 63.158 0.00 0.00 39.59 2.67
2460 2738 3.631227 TGTCATTGTGCTGTGAAATGTCA 59.369 39.130 0.00 0.00 33.84 3.58
2462 2740 3.551454 GCTGTCATTGTGCTGTGAAATGT 60.551 43.478 0.00 0.00 33.84 2.71
2471 2749 1.878088 CAGTCTTGCTGTCATTGTGCT 59.122 47.619 0.00 0.00 40.27 4.40
2550 2828 1.002366 CGAGATTGTTCGCTGAAGGG 58.998 55.000 0.00 0.00 33.39 3.95
2595 2873 0.453282 CGACGAACGTTAGAGGCGAA 60.453 55.000 17.72 0.00 37.22 4.70
2613 2891 4.036567 TCGGACATTGTTATGTACCTCG 57.963 45.455 0.00 0.00 44.90 4.63
2635 2913 6.006759 ACAGGTTACAAACTACGAGACTAC 57.993 41.667 0.00 0.00 0.00 2.73
2638 2916 6.144563 GGTAAACAGGTTACAAACTACGAGAC 59.855 42.308 10.60 0.00 43.48 3.36
2708 2986 2.092538 CCCTCCTGCTCATGAAAGTGAT 60.093 50.000 0.00 0.00 0.00 3.06
2711 2989 0.034670 GCCCTCCTGCTCATGAAAGT 60.035 55.000 0.00 0.00 0.00 2.66
2719 2997 2.749441 GCACTTGCCCTCCTGCTC 60.749 66.667 0.00 0.00 34.31 4.26
2748 3028 6.370994 CCAGGATATCTGCTAAGCTTACAATG 59.629 42.308 0.86 0.00 42.05 2.82
2805 3085 4.800023 TGTCCTCGGATATCTTGTTAGGA 58.200 43.478 2.05 5.52 0.00 2.94
2904 3184 0.721718 CCGATGAAAAGGACGAGCAC 59.278 55.000 0.00 0.00 0.00 4.40
2952 3232 2.507058 GCATCTGGGGCTCCATATATCA 59.493 50.000 5.29 0.00 43.11 2.15
2982 3262 1.312815 GCCATGCCTCGATAAAGCTT 58.687 50.000 0.00 0.00 0.00 3.74
2988 3268 1.048160 TGTCCTGCCATGCCTCGATA 61.048 55.000 0.00 0.00 0.00 2.92
3021 3301 1.266867 ATTGCTGGCCCAAATCACCC 61.267 55.000 0.00 0.00 0.00 4.61
3081 3361 1.153489 CACATCGGCAGACCTCTGG 60.153 63.158 4.49 0.00 43.94 3.86
3154 3435 1.204704 TGCTCAACGTATGGACTGGAG 59.795 52.381 0.00 0.00 0.00 3.86
3156 3437 2.093306 TTGCTCAACGTATGGACTGG 57.907 50.000 0.00 0.00 0.00 4.00
3253 3534 3.515502 TCTTCATTCCACCGAGATCAACT 59.484 43.478 0.00 0.00 0.00 3.16
3292 3573 4.421058 CATTGTGCACATTGATCCAGAAG 58.579 43.478 29.22 3.37 31.01 2.85
3420 3725 0.616395 TGTTACTCTGCGGGATCCCA 60.616 55.000 30.42 11.27 35.37 4.37
3471 3777 2.403252 ACAGGTTCCCATTCGATGTC 57.597 50.000 0.00 0.00 0.00 3.06
3498 3804 3.519913 GAGGGGAAGAGTAGGTGATGTTT 59.480 47.826 0.00 0.00 0.00 2.83
3503 3809 2.000803 TGAGAGGGGAAGAGTAGGTGA 58.999 52.381 0.00 0.00 0.00 4.02
3513 3819 5.076873 CAGGTTACAATTTTGAGAGGGGAA 58.923 41.667 0.00 0.00 0.00 3.97
3587 3893 3.428589 GGTACTCTATCAACTCCGCGTTT 60.429 47.826 4.92 0.00 32.27 3.60
3727 4033 2.119801 TGAAAGGGAAGCAGAGCATC 57.880 50.000 0.00 0.00 0.00 3.91
3728 4034 2.592102 TTGAAAGGGAAGCAGAGCAT 57.408 45.000 0.00 0.00 0.00 3.79
3892 4199 2.104144 CAGACAAGAAATTATGCGCGC 58.896 47.619 27.26 27.26 0.00 6.86
3932 4273 1.154093 GACAAGACGACGCGATCCA 60.154 57.895 15.93 0.00 0.00 3.41
3947 4288 1.000843 CACCTGACCACGATCAAGACA 59.999 52.381 0.00 0.00 0.00 3.41
4313 4692 4.105057 TCATCATCATGGTTCATGGGATCA 59.895 41.667 7.88 0.00 41.66 2.92
4324 4703 3.340928 CACGCCATATCATCATCATGGT 58.659 45.455 0.00 0.00 41.15 3.55
4336 4727 2.120909 GCCAAGCACCACGCCATAT 61.121 57.895 0.00 0.00 44.04 1.78
4337 4728 2.749839 GCCAAGCACCACGCCATA 60.750 61.111 0.00 0.00 44.04 2.74
4454 4858 0.814010 CCTTGCTGTATGCCCCGTAC 60.814 60.000 0.00 0.00 42.00 3.67
4467 4871 1.900498 GCAGTCCTTGTGCCTTGCT 60.900 57.895 0.00 0.00 34.67 3.91
4567 4981 1.537814 TTCCAGGACCGCGTGTGTAT 61.538 55.000 4.92 0.00 0.00 2.29
4575 4989 2.126031 GACGAGTTCCAGGACCGC 60.126 66.667 0.00 0.00 0.00 5.68
4652 5066 2.682856 GACCGTACGTGTACCCTAATCA 59.317 50.000 15.21 0.00 32.61 2.57
4772 5186 0.411848 GGGATTTTTGGGTGGAGGGA 59.588 55.000 0.00 0.00 0.00 4.20
5054 5494 3.141488 CCCGGTCTCCAGTCCTCG 61.141 72.222 0.00 0.00 0.00 4.63
5074 5514 2.734723 CAGTGCACGAGGGTCACG 60.735 66.667 12.01 0.00 35.97 4.35
5101 5546 3.655810 CTGAGACCCTCCAGCACGC 62.656 68.421 0.00 0.00 0.00 5.34
5163 5620 7.520453 GCAACAACTGAATGATCAACTACAGAA 60.520 37.037 20.34 0.00 34.49 3.02
5164 5621 6.073058 GCAACAACTGAATGATCAACTACAGA 60.073 38.462 20.34 0.00 34.49 3.41
5184 5641 5.925509 AGTACTAGTTTTGAGAAGGCAACA 58.074 37.500 0.00 0.00 41.41 3.33
5212 5669 1.069204 TCTTCAGTGTCACAGCAGACC 59.931 52.381 5.62 0.00 37.73 3.85
5252 5709 8.558700 GTGCCACAACAAATATTCTGAATTTTT 58.441 29.630 8.38 10.20 0.00 1.94
5280 5737 8.321716 GCAAACGATCAACTAGTACTAATCTTG 58.678 37.037 3.76 6.24 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.