Multiple sequence alignment - TraesCS4B01G236900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G236900 chr4B 100.000 6552 0 0 1 6552 495019541 495026092 0.000000e+00 12100
1 TraesCS4B01G236900 chr4B 100.000 59 0 0 5310 5368 495024811 495024869 6.950000e-20 110
2 TraesCS4B01G236900 chr4B 100.000 59 0 0 5271 5329 495024850 495024908 6.950000e-20 110
3 TraesCS4B01G236900 chr4D 95.839 3437 100 15 522 3936 400652544 400655959 0.000000e+00 5515
4 TraesCS4B01G236900 chr4D 95.900 1244 30 12 4098 5329 400655954 400657188 0.000000e+00 1995
5 TraesCS4B01G236900 chr4D 94.393 642 24 7 5310 5949 400657133 400657764 0.000000e+00 976
6 TraesCS4B01G236900 chr4D 88.021 576 28 15 5983 6552 400657836 400658376 1.540000e-180 643
7 TraesCS4B01G236900 chr4D 84.034 476 44 10 15 458 400651979 400652454 4.690000e-116 429
8 TraesCS4B01G236900 chr4D 86.982 169 13 3 3935 4095 324685052 324684885 1.450000e-41 182
9 TraesCS4B01G236900 chr4D 84.324 185 18 7 3213 3394 241249679 241249503 3.140000e-38 171
10 TraesCS4B01G236900 chr4A 93.417 3418 160 36 291 3667 58522056 58525449 0.000000e+00 5005
11 TraesCS4B01G236900 chr4A 95.495 1132 34 5 4129 5256 58525827 58526945 0.000000e+00 1792
12 TraesCS4B01G236900 chr4A 92.178 652 29 10 5310 5949 58527064 58527705 0.000000e+00 902
13 TraesCS4B01G236900 chr4A 95.014 361 16 2 3577 3936 58525454 58525813 3.430000e-157 566
14 TraesCS4B01G236900 chr4A 89.275 345 20 5 6211 6552 58528295 58528625 3.650000e-112 416
15 TraesCS4B01G236900 chr4A 91.080 213 19 0 87 299 58521544 58521756 8.310000e-74 289
16 TraesCS4B01G236900 chrUn 82.042 284 27 10 2932 3191 447134916 447135199 3.080000e-53 220
17 TraesCS4B01G236900 chrUn 84.324 185 18 7 3213 3394 304291609 304291433 3.140000e-38 171
18 TraesCS4B01G236900 chrUn 84.971 173 16 6 3221 3391 45133050 45133214 4.060000e-37 167
19 TraesCS4B01G236900 chr5D 82.042 284 27 10 2932 3191 503259555 503259272 3.080000e-53 220
20 TraesCS4B01G236900 chr5D 81.690 284 28 10 2932 3191 128183864 128183581 1.430000e-51 215
21 TraesCS4B01G236900 chr5D 81.690 284 28 10 2932 3191 503250492 503250775 1.430000e-51 215
22 TraesCS4B01G236900 chr5D 86.747 166 13 5 3937 4094 372555156 372555320 6.750000e-40 176
23 TraesCS4B01G236900 chr5D 84.615 182 17 7 3213 3391 80102744 80102917 3.140000e-38 171
24 TraesCS4B01G236900 chr3D 82.042 284 27 10 2932 3191 589254862 589255145 3.080000e-53 220
25 TraesCS4B01G236900 chr3D 82.042 284 27 11 2932 3191 589258306 589258023 3.080000e-53 220
26 TraesCS4B01G236900 chr3B 82.042 284 27 10 2932 3191 201566121 201566404 3.080000e-53 220
27 TraesCS4B01G236900 chr7B 89.286 168 9 3 3936 4095 56995166 56995332 1.110000e-47 202
28 TraesCS4B01G236900 chr7B 85.714 182 14 5 3925 4098 733134744 733134921 1.450000e-41 182
29 TraesCS4B01G236900 chr7B 85.806 155 13 3 3936 4081 747450245 747450399 8.800000e-34 156
30 TraesCS4B01G236900 chr7D 90.071 141 13 1 3052 3191 101578310 101578450 1.450000e-41 182
31 TraesCS4B01G236900 chr3A 86.905 168 13 3 3936 4095 215966382 215966216 5.220000e-41 180
32 TraesCS4B01G236900 chr6D 84.615 182 17 7 3213 3391 430465436 430465609 3.140000e-38 171
33 TraesCS4B01G236900 chr2B 84.615 182 17 7 3213 3391 449201658 449201831 3.140000e-38 171
34 TraesCS4B01G236900 chr5B 85.294 170 13 5 3937 4098 538043172 538043007 1.460000e-36 165
35 TraesCS4B01G236900 chr1A 84.000 175 18 6 3219 3391 94740168 94740334 6.800000e-35 159
36 TraesCS4B01G236900 chr7A 85.714 154 14 2 3936 4081 735113355 735113508 8.800000e-34 156
37 TraesCS4B01G236900 chr6B 88.430 121 12 2 3929 4049 27187582 27187700 1.900000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G236900 chr4B 495019541 495026092 6551 False 4106.666667 12100 100.000000 1 6552 3 chr4B.!!$F1 6551
1 TraesCS4B01G236900 chr4D 400651979 400658376 6397 False 1911.600000 5515 91.637400 15 6552 5 chr4D.!!$F1 6537
2 TraesCS4B01G236900 chr4A 58521544 58528625 7081 False 1495.000000 5005 92.743167 87 6552 6 chr4A.!!$F1 6465

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
32 33 0.539669 GGCACAATGGGCCCTATACC 60.540 60.0 25.70 13.22 45.87 2.73 F
1382 1794 0.248012 TTCCGGATGCTGACGCTTTA 59.752 50.0 4.15 0.00 36.97 1.85 F
3211 3645 0.462789 CTTGCTGGAATGATTGCCCC 59.537 55.0 0.00 0.00 0.00 5.80 F
3961 4490 1.029408 CGGTGCCGGGAATTCATTCA 61.029 55.0 2.18 0.00 38.53 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1393 1805 0.474184 ACCCCAATCGGCCAGAATAG 59.526 55.0 2.24 0.0 0.00 1.73 R
3271 3705 0.185175 AGGTGGGTTTCACTGGTTCC 59.815 55.0 0.00 0.0 45.38 3.62 R
4060 4589 0.031043 GCATGTGCTGTGCAGTCAAA 59.969 50.0 0.00 0.0 40.08 2.69 R
5883 6532 0.243095 CCCAAAGAGCTTGAAGCAGC 59.757 55.0 20.45 10.8 45.56 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.179152 TGATGAAGCAGGCACAATGG 58.821 50.000 0.00 0.00 0.00 3.16
32 33 0.539669 GGCACAATGGGCCCTATACC 60.540 60.000 25.70 13.22 45.87 2.73
74 75 2.711542 GACAAATGTCCTCCCGTTCAT 58.288 47.619 2.04 0.00 39.07 2.57
117 119 8.695456 ACAAAGTGAACTCCATGAATTTTAAGT 58.305 29.630 0.00 0.00 0.00 2.24
143 168 2.130395 CGATGGACTGATTGGATGACG 58.870 52.381 0.00 0.00 0.00 4.35
167 192 4.647291 ATTTTCGAGTCTACAACAAGCG 57.353 40.909 0.00 0.00 0.00 4.68
181 206 1.269448 ACAAGCGCAATGTGGGTTAAG 59.731 47.619 16.73 0.00 32.36 1.85
254 281 4.426416 CATCGCCATCACAAATGAAACAT 58.574 39.130 0.00 0.00 38.69 2.71
333 668 2.039216 TCCGGCAACCAACAATCTTAGA 59.961 45.455 0.00 0.00 0.00 2.10
335 670 3.365969 CCGGCAACCAACAATCTTAGAAC 60.366 47.826 0.00 0.00 0.00 3.01
336 671 3.666902 CGGCAACCAACAATCTTAGAACG 60.667 47.826 0.00 0.00 0.00 3.95
337 672 3.252458 GGCAACCAACAATCTTAGAACGT 59.748 43.478 0.00 0.00 0.00 3.99
372 708 7.936496 TGGTTGTTCATCAATTAGCTAATGA 57.064 32.000 19.53 17.43 38.38 2.57
374 710 8.461222 TGGTTGTTCATCAATTAGCTAATGAAG 58.539 33.333 19.53 14.62 38.44 3.02
391 727 4.610605 TGAAGGTCCAATAACGTCAGAA 57.389 40.909 0.00 0.00 0.00 3.02
458 832 1.739466 CGGCACAATCAGCACACTAAT 59.261 47.619 0.00 0.00 0.00 1.73
459 833 2.476686 CGGCACAATCAGCACACTAATG 60.477 50.000 0.00 0.00 0.00 1.90
460 834 2.749076 GGCACAATCAGCACACTAATGA 59.251 45.455 0.00 0.00 0.00 2.57
461 835 3.379372 GGCACAATCAGCACACTAATGAT 59.621 43.478 0.00 0.00 35.21 2.45
462 836 4.576053 GGCACAATCAGCACACTAATGATA 59.424 41.667 0.00 0.00 33.40 2.15
463 837 5.066375 GGCACAATCAGCACACTAATGATAA 59.934 40.000 0.00 0.00 33.40 1.75
464 838 6.197276 GCACAATCAGCACACTAATGATAAG 58.803 40.000 0.00 0.00 33.40 1.73
465 839 6.037500 GCACAATCAGCACACTAATGATAAGA 59.962 38.462 0.00 0.00 33.40 2.10
466 840 7.255035 GCACAATCAGCACACTAATGATAAGAT 60.255 37.037 0.00 0.00 33.40 2.40
467 841 8.281194 CACAATCAGCACACTAATGATAAGATC 58.719 37.037 0.00 0.00 33.40 2.75
468 842 8.209584 ACAATCAGCACACTAATGATAAGATCT 58.790 33.333 0.00 0.00 33.40 2.75
469 843 8.710551 CAATCAGCACACTAATGATAAGATCTC 58.289 37.037 0.00 0.00 33.40 2.75
470 844 6.442112 TCAGCACACTAATGATAAGATCTCG 58.558 40.000 0.00 0.00 0.00 4.04
471 845 6.039829 TCAGCACACTAATGATAAGATCTCGT 59.960 38.462 0.00 0.00 0.00 4.18
472 846 7.228706 TCAGCACACTAATGATAAGATCTCGTA 59.771 37.037 0.00 0.00 0.00 3.43
473 847 7.862873 CAGCACACTAATGATAAGATCTCGTAA 59.137 37.037 0.00 0.00 0.00 3.18
474 848 8.414003 AGCACACTAATGATAAGATCTCGTAAA 58.586 33.333 0.00 0.00 0.00 2.01
475 849 9.031360 GCACACTAATGATAAGATCTCGTAAAA 57.969 33.333 0.00 0.00 0.00 1.52
515 897 3.772025 ACTAAGAATGTGGAGACAGGGAG 59.228 47.826 0.00 0.00 44.46 4.30
532 926 2.418746 GGGAGCATTCAAACTCTCGCTA 60.419 50.000 0.00 0.00 36.14 4.26
585 983 2.257353 CTGCTACACAGGCCCAAAC 58.743 57.895 0.00 0.00 43.19 2.93
603 1001 3.241530 TCACAGCTGGGCCGAAGT 61.242 61.111 19.93 0.00 0.00 3.01
923 1325 2.819348 GCCTTTTCCACCAACTCCATCT 60.819 50.000 0.00 0.00 0.00 2.90
957 1363 1.510844 CCTATTTGTTGCGCCACCC 59.489 57.895 9.38 0.00 0.00 4.61
958 1364 0.965363 CCTATTTGTTGCGCCACCCT 60.965 55.000 9.38 0.00 0.00 4.34
1023 1429 2.749044 AGCGACGCCGAGGAAGTA 60.749 61.111 17.79 0.00 38.22 2.24
1068 1474 2.792599 GAGCAGGACGACGACGAT 59.207 61.111 15.32 0.00 42.66 3.73
1254 1660 5.654603 TTGCTTCTCTTACTGACGGATTA 57.345 39.130 0.00 0.00 0.00 1.75
1318 1730 2.415843 GCGGCGCAGGTGACTATA 59.584 61.111 29.21 0.00 40.21 1.31
1382 1794 0.248012 TTCCGGATGCTGACGCTTTA 59.752 50.000 4.15 0.00 36.97 1.85
1393 1805 7.044052 GGATGCTGACGCTTTATTTTGTAAATC 60.044 37.037 0.00 0.00 36.97 2.17
1403 1815 9.249457 GCTTTATTTTGTAAATCTATTCTGGCC 57.751 33.333 0.00 0.00 0.00 5.36
1651 2063 1.423584 TACGATGATGTGCCCCTCAT 58.576 50.000 0.00 0.00 34.86 2.90
1716 2128 3.263261 TGTGAGTACTAGTCGCTGAGAG 58.737 50.000 0.00 0.00 0.00 3.20
1792 2208 5.717078 TTTATATGCCGGTAGAACGATCT 57.283 39.130 1.90 0.00 39.82 2.75
1799 2215 4.038763 TGCCGGTAGAACGATCTTATGATT 59.961 41.667 1.90 0.00 37.10 2.57
1808 2224 7.988737 AGAACGATCTTATGATTGCATTTTCA 58.011 30.769 5.88 0.00 37.55 2.69
2090 2510 4.935808 CGAATTTTGGCTCTAAGTACCAGT 59.064 41.667 0.00 0.00 34.28 4.00
2091 2511 6.103997 CGAATTTTGGCTCTAAGTACCAGTA 58.896 40.000 0.00 0.00 34.28 2.74
2143 2563 2.291043 CCCTACCTCCACGCCAACT 61.291 63.158 0.00 0.00 0.00 3.16
2201 2621 6.747414 TCCTGAATAGCCACTAATATGTGT 57.253 37.500 0.00 0.00 36.30 3.72
2624 3044 4.668138 AAATACTAAGCCCTGTCCCAAA 57.332 40.909 0.00 0.00 0.00 3.28
2851 3277 4.460263 TGTCCATACAAACTGAAAGCACT 58.540 39.130 0.00 0.00 31.12 4.40
2857 3283 7.333423 TCCATACAAACTGAAAGCACTACATAC 59.667 37.037 0.00 0.00 37.60 2.39
2930 3356 9.132521 CTTTCCAATGAGTAATGATGTTCAAAC 57.867 33.333 0.00 0.00 0.00 2.93
2935 3361 9.345517 CAATGAGTAATGATGTTCAAACGAATT 57.654 29.630 0.00 0.00 0.00 2.17
3045 3472 1.202698 AGCCTTCAGTTCAGTTCGCTT 60.203 47.619 0.00 0.00 0.00 4.68
3110 3544 2.800544 CGACCAGTCAGTTAACAGTTGG 59.199 50.000 8.61 13.80 0.00 3.77
3211 3645 0.462789 CTTGCTGGAATGATTGCCCC 59.537 55.000 0.00 0.00 0.00 5.80
3246 3680 1.428869 GGATGCAGAGTAGGGGATGT 58.571 55.000 0.00 0.00 0.00 3.06
3271 3705 4.323417 TGGCACATGTTAGTTAGGACTTG 58.677 43.478 0.00 0.00 37.33 3.16
3324 3759 5.209818 ACGTTCAGTTTGGAGATCTAACA 57.790 39.130 9.06 3.01 34.35 2.41
3437 3872 3.063725 GCTCGGTCAGTACTACACTACAG 59.936 52.174 0.00 0.00 34.98 2.74
3489 3924 4.130118 GTGGGCAGATAGTACTTTGATGG 58.870 47.826 0.00 0.00 0.00 3.51
3511 3946 5.071250 TGGTGGTGAAGTACATACTGTTCTT 59.929 40.000 0.00 0.00 40.03 2.52
3702 4230 7.147532 GGAGGAAAGTCTTGTAATGGTATAGGT 60.148 40.741 0.00 0.00 0.00 3.08
3707 4235 9.832445 AAAGTCTTGTAATGGTATAGGTGTATG 57.168 33.333 0.00 0.00 0.00 2.39
3717 4245 7.956328 TGGTATAGGTGTATGGCTTATCTAG 57.044 40.000 0.00 0.00 0.00 2.43
3768 4296 1.629353 CATAGCTCCTGCCCTGATCAT 59.371 52.381 0.00 0.00 40.80 2.45
3781 4309 4.382040 GCCCTGATCATGTATGCTACGTAT 60.382 45.833 0.00 0.00 0.00 3.06
3925 4454 6.529829 GCATGTATCTGATCGGAAATCTAGAC 59.470 42.308 8.65 0.00 0.00 2.59
3929 4458 6.907853 ATCTGATCGGAAATCTAGACATCA 57.092 37.500 8.65 0.00 0.00 3.07
3930 4459 6.907853 TCTGATCGGAAATCTAGACATCAT 57.092 37.500 0.39 0.00 0.00 2.45
3931 4460 8.586879 ATCTGATCGGAAATCTAGACATCATA 57.413 34.615 8.65 0.00 0.00 2.15
3932 4461 8.049655 TCTGATCGGAAATCTAGACATCATAG 57.950 38.462 0.39 0.00 0.00 2.23
3933 4462 7.667635 TCTGATCGGAAATCTAGACATCATAGT 59.332 37.037 0.39 0.00 0.00 2.12
3934 4463 8.863872 TGATCGGAAATCTAGACATCATAGTA 57.136 34.615 0.00 0.00 0.00 1.82
3935 4464 8.951243 TGATCGGAAATCTAGACATCATAGTAG 58.049 37.037 0.00 0.00 0.00 2.57
3936 4465 7.147143 TCGGAAATCTAGACATCATAGTAGC 57.853 40.000 0.00 0.00 0.00 3.58
3937 4466 6.715264 TCGGAAATCTAGACATCATAGTAGCA 59.285 38.462 0.00 0.00 0.00 3.49
3938 4467 7.026562 CGGAAATCTAGACATCATAGTAGCAG 58.973 42.308 0.00 0.00 0.00 4.24
3939 4468 7.308891 CGGAAATCTAGACATCATAGTAGCAGT 60.309 40.741 0.00 0.00 0.00 4.40
3940 4469 7.812191 GGAAATCTAGACATCATAGTAGCAGTG 59.188 40.741 0.00 0.00 0.00 3.66
3941 4470 6.832520 ATCTAGACATCATAGTAGCAGTGG 57.167 41.667 0.00 0.00 0.00 4.00
3942 4471 3.742433 AGACATCATAGTAGCAGTGGC 57.258 47.619 0.00 0.00 41.61 5.01
3958 4487 2.828549 GCGGTGCCGGGAATTCAT 60.829 61.111 12.82 0.00 40.19 2.57
3959 4488 2.414785 GCGGTGCCGGGAATTCATT 61.415 57.895 12.82 0.00 40.19 2.57
3960 4489 1.727467 CGGTGCCGGGAATTCATTC 59.273 57.895 2.18 0.00 36.08 2.67
3961 4490 1.029408 CGGTGCCGGGAATTCATTCA 61.029 55.000 2.18 0.00 38.53 2.57
3962 4491 1.402787 GGTGCCGGGAATTCATTCAT 58.597 50.000 2.18 0.00 38.53 2.57
3963 4492 1.067516 GGTGCCGGGAATTCATTCATG 59.932 52.381 2.18 0.00 38.53 3.07
3964 4493 1.750778 GTGCCGGGAATTCATTCATGT 59.249 47.619 2.18 0.00 38.53 3.21
3965 4494 1.750206 TGCCGGGAATTCATTCATGTG 59.250 47.619 2.18 0.00 38.53 3.21
3966 4495 1.750778 GCCGGGAATTCATTCATGTGT 59.249 47.619 2.18 0.00 38.53 3.72
3967 4496 2.948979 GCCGGGAATTCATTCATGTGTA 59.051 45.455 2.18 0.00 38.53 2.90
3968 4497 3.003689 GCCGGGAATTCATTCATGTGTAG 59.996 47.826 2.18 0.00 38.53 2.74
3969 4498 4.199310 CCGGGAATTCATTCATGTGTAGT 58.801 43.478 7.93 0.00 38.53 2.73
3970 4499 4.273480 CCGGGAATTCATTCATGTGTAGTC 59.727 45.833 7.93 0.00 38.53 2.59
3971 4500 4.875536 CGGGAATTCATTCATGTGTAGTCA 59.124 41.667 7.93 0.00 38.53 3.41
3972 4501 5.353956 CGGGAATTCATTCATGTGTAGTCAA 59.646 40.000 7.93 0.00 38.53 3.18
3973 4502 6.038603 CGGGAATTCATTCATGTGTAGTCAAT 59.961 38.462 7.93 0.00 38.53 2.57
3974 4503 7.415541 CGGGAATTCATTCATGTGTAGTCAATT 60.416 37.037 7.93 0.00 38.53 2.32
3975 4504 7.917505 GGGAATTCATTCATGTGTAGTCAATTC 59.082 37.037 7.93 0.00 38.53 2.17
3976 4505 8.461222 GGAATTCATTCATGTGTAGTCAATTCA 58.539 33.333 7.93 0.00 38.53 2.57
3977 4506 9.844790 GAATTCATTCATGTGTAGTCAATTCAA 57.155 29.630 0.00 0.00 36.80 2.69
3979 4508 9.630098 ATTCATTCATGTGTAGTCAATTCAAAC 57.370 29.630 0.00 0.00 0.00 2.93
3980 4509 8.394971 TCATTCATGTGTAGTCAATTCAAACT 57.605 30.769 0.00 0.00 0.00 2.66
3981 4510 8.849168 TCATTCATGTGTAGTCAATTCAAACTT 58.151 29.630 0.00 0.00 0.00 2.66
3982 4511 8.908678 CATTCATGTGTAGTCAATTCAAACTTG 58.091 33.333 0.00 0.00 0.00 3.16
3983 4512 7.566760 TCATGTGTAGTCAATTCAAACTTGT 57.433 32.000 0.00 0.00 0.00 3.16
3984 4513 7.416817 TCATGTGTAGTCAATTCAAACTTGTG 58.583 34.615 0.00 0.00 0.00 3.33
3985 4514 6.751514 TGTGTAGTCAATTCAAACTTGTGT 57.248 33.333 0.00 0.00 0.00 3.72
3986 4515 7.851387 TGTGTAGTCAATTCAAACTTGTGTA 57.149 32.000 0.00 0.00 0.00 2.90
3987 4516 7.915508 TGTGTAGTCAATTCAAACTTGTGTAG 58.084 34.615 0.00 0.00 0.00 2.74
3988 4517 7.551262 TGTGTAGTCAATTCAAACTTGTGTAGT 59.449 33.333 0.00 0.00 39.32 2.73
3989 4518 8.062448 GTGTAGTCAATTCAAACTTGTGTAGTC 58.938 37.037 0.00 0.00 35.54 2.59
3990 4519 7.766738 TGTAGTCAATTCAAACTTGTGTAGTCA 59.233 33.333 0.00 0.00 35.54 3.41
3991 4520 7.807977 AGTCAATTCAAACTTGTGTAGTCAT 57.192 32.000 0.00 0.00 35.54 3.06
3992 4521 8.902540 AGTCAATTCAAACTTGTGTAGTCATA 57.097 30.769 0.00 0.00 35.54 2.15
3993 4522 8.774586 AGTCAATTCAAACTTGTGTAGTCATAC 58.225 33.333 0.00 0.00 35.54 2.39
3994 4523 7.740346 GTCAATTCAAACTTGTGTAGTCATACG 59.260 37.037 0.00 0.00 35.54 3.06
3995 4524 7.439955 TCAATTCAAACTTGTGTAGTCATACGT 59.560 33.333 0.00 0.00 35.54 3.57
3996 4525 8.705134 CAATTCAAACTTGTGTAGTCATACGTA 58.295 33.333 0.00 0.00 35.54 3.57
3997 4526 8.997621 ATTCAAACTTGTGTAGTCATACGTAT 57.002 30.769 1.14 1.14 35.54 3.06
3998 4527 7.806149 TCAAACTTGTGTAGTCATACGTATG 57.194 36.000 26.35 26.35 35.54 2.39
3999 4528 7.372714 TCAAACTTGTGTAGTCATACGTATGT 58.627 34.615 29.56 17.29 35.54 2.29
4000 4529 8.513774 TCAAACTTGTGTAGTCATACGTATGTA 58.486 33.333 29.56 16.36 35.54 2.29
4001 4530 9.297586 CAAACTTGTGTAGTCATACGTATGTAT 57.702 33.333 29.56 22.13 37.71 2.29
4002 4531 9.865321 AAACTTGTGTAGTCATACGTATGTATT 57.135 29.630 29.56 19.72 36.14 1.89
4003 4532 9.865321 AACTTGTGTAGTCATACGTATGTATTT 57.135 29.630 29.56 17.74 36.14 1.40
4007 4536 8.825745 TGTGTAGTCATACGTATGTATTTACGA 58.174 33.333 29.56 16.35 46.02 3.43
4008 4537 9.817365 GTGTAGTCATACGTATGTATTTACGAT 57.183 33.333 29.56 11.67 46.02 3.73
4054 4583 9.842775 ACTCATTATATGATGTTCTTGATGTGT 57.157 29.630 7.30 0.00 38.85 3.72
4061 4590 9.842775 ATATGATGTTCTTGATGTGTAGTCATT 57.157 29.630 0.00 0.00 0.00 2.57
4062 4591 7.984422 TGATGTTCTTGATGTGTAGTCATTT 57.016 32.000 0.00 0.00 0.00 2.32
4063 4592 7.809665 TGATGTTCTTGATGTGTAGTCATTTG 58.190 34.615 0.00 0.00 0.00 2.32
4064 4593 7.661027 TGATGTTCTTGATGTGTAGTCATTTGA 59.339 33.333 0.00 0.00 0.00 2.69
4065 4594 7.189693 TGTTCTTGATGTGTAGTCATTTGAC 57.810 36.000 2.41 2.41 45.08 3.18
4075 4604 2.042104 GTCATTTGACTGCACAGCAC 57.958 50.000 3.45 0.00 41.65 4.40
4076 4605 1.334556 GTCATTTGACTGCACAGCACA 59.665 47.619 3.45 0.00 41.65 4.57
4077 4606 2.030540 GTCATTTGACTGCACAGCACAT 60.031 45.455 3.45 0.00 41.65 3.21
4078 4607 2.030628 TCATTTGACTGCACAGCACATG 60.031 45.455 11.60 11.60 33.79 3.21
4079 4608 0.031043 TTTGACTGCACAGCACATGC 59.969 50.000 0.00 0.00 43.68 4.06
4084 4613 2.508439 GCACAGCACATGCATGGC 60.508 61.111 29.41 26.51 45.16 4.40
4085 4614 3.001902 GCACAGCACATGCATGGCT 62.002 57.895 29.41 28.06 45.16 4.75
4086 4615 1.589630 CACAGCACATGCATGGCTT 59.410 52.632 28.99 20.59 45.16 4.35
4087 4616 0.457853 CACAGCACATGCATGGCTTC 60.458 55.000 28.99 16.79 45.16 3.86
4088 4617 1.226575 CAGCACATGCATGGCTTCG 60.227 57.895 28.99 19.65 45.16 3.79
4089 4618 2.581409 GCACATGCATGGCTTCGC 60.581 61.111 29.41 18.73 41.59 4.70
4177 4707 2.035066 GCCTTTATTAGCATGTGCCTGG 59.965 50.000 0.57 0.00 43.38 4.45
4242 4772 2.073056 CGCCACAACTTACATGCTACA 58.927 47.619 0.00 0.00 0.00 2.74
4250 4780 6.089551 CACAACTTACATGCTACACTGACTAC 59.910 42.308 0.00 0.00 0.00 2.73
4258 4788 3.099362 GCTACACTGACTACGATGTTCG 58.901 50.000 0.00 0.00 46.93 3.95
4264 4794 1.816835 TGACTACGATGTTCGCCTCTT 59.183 47.619 0.00 0.00 45.12 2.85
4265 4795 2.186076 GACTACGATGTTCGCCTCTTG 58.814 52.381 0.00 0.00 45.12 3.02
4268 4802 1.429463 ACGATGTTCGCCTCTTGTTC 58.571 50.000 0.00 0.00 45.12 3.18
4278 4812 2.351835 CGCCTCTTGTTCTCTTTCTCGA 60.352 50.000 0.00 0.00 0.00 4.04
4402 4936 4.019792 TCACACATGGTCAAGCATTAGT 57.980 40.909 0.00 0.00 0.00 2.24
4705 5239 6.016024 TGTTTGGTGATGAGATTTTCAAGGAG 60.016 38.462 0.00 0.00 39.77 3.69
4801 5335 5.768164 TGTTGAAAGGTTATCTGGTTTCCTC 59.232 40.000 0.00 0.00 0.00 3.71
4996 5531 8.943002 AGTAAATTGTACTAACTGTGTATTGCC 58.057 33.333 0.00 0.00 0.00 4.52
5172 5707 4.635223 TCAGGATGAACACAAGAGTCAAG 58.365 43.478 0.00 0.00 45.97 3.02
5266 5905 8.642432 TGATAAGGATCACCATACTAGAAGTTG 58.358 37.037 0.00 0.00 37.15 3.16
5324 5963 8.814038 ATTAATTGAGATTAGCTGTTTCTGGT 57.186 30.769 0.00 0.00 0.00 4.00
5325 5964 8.635765 TTAATTGAGATTAGCTGTTTCTGGTT 57.364 30.769 0.00 0.00 0.00 3.67
5326 5965 5.947228 TTGAGATTAGCTGTTTCTGGTTG 57.053 39.130 0.00 0.00 0.00 3.77
5327 5966 3.753272 TGAGATTAGCTGTTTCTGGTTGC 59.247 43.478 0.00 0.00 0.00 4.17
5328 5967 4.006319 GAGATTAGCTGTTTCTGGTTGCT 58.994 43.478 0.00 0.00 37.72 3.91
5329 5968 4.401925 AGATTAGCTGTTTCTGGTTGCTT 58.598 39.130 0.00 0.00 35.47 3.91
5330 5969 5.560724 AGATTAGCTGTTTCTGGTTGCTTA 58.439 37.500 0.00 0.00 35.47 3.09
5331 5970 6.183347 AGATTAGCTGTTTCTGGTTGCTTAT 58.817 36.000 0.00 0.00 35.47 1.73
5332 5971 6.660949 AGATTAGCTGTTTCTGGTTGCTTATT 59.339 34.615 0.00 0.00 35.47 1.40
5333 5972 6.648879 TTAGCTGTTTCTGGTTGCTTATTT 57.351 33.333 0.00 0.00 35.47 1.40
5334 5973 5.535753 AGCTGTTTCTGGTTGCTTATTTT 57.464 34.783 0.00 0.00 0.00 1.82
5335 5974 5.917462 AGCTGTTTCTGGTTGCTTATTTTT 58.083 33.333 0.00 0.00 0.00 1.94
5429 6068 2.609916 GGAAAGCGACCTATTCTTCAGC 59.390 50.000 0.00 0.00 0.00 4.26
5548 6187 2.081526 CGAAGTGGCGGACAAGATG 58.918 57.895 0.00 0.00 0.00 2.90
5866 6515 6.674694 TTTGTGCTGCAAATTTGTTACAAT 57.325 29.167 19.03 0.00 41.68 2.71
5867 6516 6.674694 TTGTGCTGCAAATTTGTTACAATT 57.325 29.167 19.03 0.00 33.53 2.32
5904 6553 1.811359 CTGCTTCAAGCTCTTTGGGAG 59.189 52.381 11.57 0.00 42.97 4.30
5912 6561 0.905357 GCTCTTTGGGAGGCTGACTA 59.095 55.000 0.00 0.00 42.08 2.59
5913 6562 1.279271 GCTCTTTGGGAGGCTGACTAA 59.721 52.381 0.00 0.00 42.08 2.24
5917 6566 3.769844 TCTTTGGGAGGCTGACTAACTAG 59.230 47.826 0.00 0.00 0.00 2.57
5919 6568 2.736347 TGGGAGGCTGACTAACTAGAC 58.264 52.381 0.00 0.00 0.00 2.59
5925 6576 5.393678 GGAGGCTGACTAACTAGACTTGAAG 60.394 48.000 0.00 0.00 30.84 3.02
5932 6583 9.781834 CTGACTAACTAGACTTGAAGTGAATAG 57.218 37.037 0.90 5.03 0.00 1.73
5934 6585 9.562583 GACTAACTAGACTTGAAGTGAATAGTG 57.437 37.037 0.90 1.14 0.00 2.74
5949 6600 4.830046 TGAATAGTGCCAGCTGGTTAAAAA 59.170 37.500 32.81 14.80 37.57 1.94
5951 6602 3.665745 AGTGCCAGCTGGTTAAAAATG 57.334 42.857 32.81 5.52 37.57 2.32
5952 6603 2.068519 GTGCCAGCTGGTTAAAAATGC 58.931 47.619 32.81 15.90 37.57 3.56
5953 6604 1.001860 TGCCAGCTGGTTAAAAATGCC 59.998 47.619 32.81 13.19 37.57 4.40
5954 6605 1.001860 GCCAGCTGGTTAAAAATGCCA 59.998 47.619 32.81 0.00 37.57 4.92
5956 6607 3.328505 CCAGCTGGTTAAAAATGCCAAG 58.671 45.455 25.53 0.00 0.00 3.61
5957 6608 2.738314 CAGCTGGTTAAAAATGCCAAGC 59.262 45.455 5.57 0.00 0.00 4.01
5958 6609 1.726248 GCTGGTTAAAAATGCCAAGCG 59.274 47.619 0.00 0.00 0.00 4.68
5959 6610 2.336667 CTGGTTAAAAATGCCAAGCGG 58.663 47.619 0.00 0.00 0.00 5.52
5960 6611 1.964223 TGGTTAAAAATGCCAAGCGGA 59.036 42.857 0.00 0.00 0.00 5.54
5961 6612 2.029470 TGGTTAAAAATGCCAAGCGGAG 60.029 45.455 0.00 0.00 0.00 4.63
5975 6626 3.179433 CGGAGCATCTTAATCGCGA 57.821 52.632 13.09 13.09 33.73 5.87
5976 6627 1.487482 CGGAGCATCTTAATCGCGAA 58.513 50.000 15.24 0.00 33.73 4.70
5979 6630 3.242284 CGGAGCATCTTAATCGCGAAAAA 60.242 43.478 15.24 9.75 33.73 1.94
6010 6700 3.833559 AGGTTTGAATCCTGGGAATGT 57.166 42.857 0.00 0.00 33.62 2.71
6013 6703 3.193479 GGTTTGAATCCTGGGAATGTGTC 59.807 47.826 0.00 0.00 0.00 3.67
6028 6719 2.267961 GTCCCCGCCGAGAAATGT 59.732 61.111 0.00 0.00 0.00 2.71
6032 6723 0.177141 CCCCGCCGAGAAATGTAAGA 59.823 55.000 0.00 0.00 0.00 2.10
6033 6724 1.202651 CCCCGCCGAGAAATGTAAGAT 60.203 52.381 0.00 0.00 0.00 2.40
6053 6744 0.333993 ATGCTGCCTGTGGAGGATTT 59.666 50.000 0.00 0.00 42.93 2.17
6060 6751 1.002624 TGTGGAGGATTTCGGTGCC 60.003 57.895 0.00 0.00 0.00 5.01
6061 6752 1.002624 GTGGAGGATTTCGGTGCCA 60.003 57.895 0.00 0.00 0.00 4.92
6062 6753 1.002624 TGGAGGATTTCGGTGCCAC 60.003 57.895 0.00 0.00 0.00 5.01
6063 6754 1.299976 GGAGGATTTCGGTGCCACT 59.700 57.895 0.00 0.00 0.00 4.00
6064 6755 1.026718 GGAGGATTTCGGTGCCACTG 61.027 60.000 0.00 0.00 0.00 3.66
6065 6756 0.321653 GAGGATTTCGGTGCCACTGT 60.322 55.000 3.12 0.00 0.00 3.55
6073 6764 0.462581 CGGTGCCACTGTAGATGCAT 60.463 55.000 0.00 0.00 35.96 3.96
6075 6766 2.487934 GGTGCCACTGTAGATGCATAG 58.512 52.381 0.00 0.00 35.96 2.23
6097 6788 1.959899 GCATGTCTGTCGTTGAGGCG 61.960 60.000 0.00 0.00 0.00 5.52
6103 6794 0.232303 CTGTCGTTGAGGCGTGTTTC 59.768 55.000 0.00 0.00 0.00 2.78
6104 6795 1.155424 TGTCGTTGAGGCGTGTTTCC 61.155 55.000 0.00 0.00 0.00 3.13
6105 6796 0.878961 GTCGTTGAGGCGTGTTTCCT 60.879 55.000 0.00 0.00 36.46 3.36
6109 6800 2.654877 GAGGCGTGTTTCCTCCGA 59.345 61.111 0.00 0.00 43.32 4.55
6110 6801 1.446272 GAGGCGTGTTTCCTCCGAG 60.446 63.158 0.00 0.00 43.32 4.63
6153 6847 3.674997 GAACATACTGCCTTGGAAGTCA 58.325 45.455 3.08 0.00 0.00 3.41
6166 6860 4.589216 TGGAAGTCAAAGCTTTGGATTG 57.411 40.909 33.01 13.46 38.66 2.67
6175 6869 1.267806 AGCTTTGGATTGCGTGTTGAG 59.732 47.619 0.00 0.00 0.00 3.02
6178 6872 0.865111 TTGGATTGCGTGTTGAGACG 59.135 50.000 0.00 0.00 42.42 4.18
6179 6873 0.249699 TGGATTGCGTGTTGAGACGT 60.250 50.000 2.66 0.00 41.54 4.34
6180 6874 1.000052 TGGATTGCGTGTTGAGACGTA 60.000 47.619 2.66 0.00 41.54 3.57
6181 6875 1.654105 GGATTGCGTGTTGAGACGTAG 59.346 52.381 2.66 0.00 41.54 3.51
6182 6876 1.059264 GATTGCGTGTTGAGACGTAGC 59.941 52.381 2.66 0.00 41.54 3.58
6183 6877 0.249114 TTGCGTGTTGAGACGTAGCA 60.249 50.000 2.66 0.00 41.54 3.49
6184 6878 0.937699 TGCGTGTTGAGACGTAGCAC 60.938 55.000 2.66 0.00 41.54 4.40
6185 6879 1.615107 GCGTGTTGAGACGTAGCACC 61.615 60.000 2.66 0.00 41.54 5.01
6186 6880 0.039437 CGTGTTGAGACGTAGCACCT 60.039 55.000 0.00 0.00 34.56 4.00
6187 6881 1.602165 CGTGTTGAGACGTAGCACCTT 60.602 52.381 0.00 0.00 34.56 3.50
6267 7265 1.076533 GTACGACGCACATCACCTGG 61.077 60.000 0.00 0.00 0.00 4.45
6285 7283 1.520787 GGAATCTACCGGTGCGTGG 60.521 63.158 19.93 2.11 0.00 4.94
6315 7313 0.321671 CATGTTGTCCTCTCCCGTGT 59.678 55.000 0.00 0.00 0.00 4.49
6361 7359 4.879545 CCTCCTCTCTATTCGCTAGGTATC 59.120 50.000 0.00 0.00 0.00 2.24
6362 7360 5.338871 CCTCCTCTCTATTCGCTAGGTATCT 60.339 48.000 0.00 0.00 0.00 1.98
6363 7361 6.126997 CCTCCTCTCTATTCGCTAGGTATCTA 60.127 46.154 0.00 0.00 0.00 1.98
6364 7362 6.880484 TCCTCTCTATTCGCTAGGTATCTAG 58.120 44.000 5.60 5.60 44.40 2.43
6377 7375 7.263100 CTAGGTATCTAGCATCATCTAGCAG 57.737 44.000 0.00 0.00 36.86 4.24
6378 7376 5.825532 AGGTATCTAGCATCATCTAGCAGA 58.174 41.667 0.00 0.00 36.77 4.26
6379 7377 6.252233 AGGTATCTAGCATCATCTAGCAGAA 58.748 40.000 0.00 0.00 36.77 3.02
6380 7378 6.377996 AGGTATCTAGCATCATCTAGCAGAAG 59.622 42.308 0.00 0.00 36.77 2.85
6381 7379 6.376864 GGTATCTAGCATCATCTAGCAGAAGA 59.623 42.308 0.00 0.00 36.77 2.87
6382 7380 5.963176 TCTAGCATCATCTAGCAGAAGAG 57.037 43.478 0.00 0.00 36.77 2.85
6383 7381 5.629125 TCTAGCATCATCTAGCAGAAGAGA 58.371 41.667 0.00 0.00 36.77 3.10
6402 7400 2.424956 AGAAATGGAAAATGCTCGAGCC 59.575 45.455 33.23 17.74 41.18 4.70
6428 7426 2.238646 ACGCCCATTGACTTCCAGATAA 59.761 45.455 0.00 0.00 0.00 1.75
6432 7430 4.122776 CCCATTGACTTCCAGATAAGACG 58.877 47.826 0.00 0.00 0.00 4.18
6439 7437 3.197766 ACTTCCAGATAAGACGCCATTGA 59.802 43.478 0.00 0.00 0.00 2.57
6465 7463 3.305881 GGTCGTAGTTGTTGGTAAGCTCT 60.306 47.826 0.00 0.00 0.00 4.09
6466 7464 4.082571 GGTCGTAGTTGTTGGTAAGCTCTA 60.083 45.833 0.00 0.00 0.00 2.43
6467 7465 5.094134 GTCGTAGTTGTTGGTAAGCTCTAG 58.906 45.833 0.00 0.00 0.00 2.43
6468 7466 4.157289 TCGTAGTTGTTGGTAAGCTCTAGG 59.843 45.833 0.00 0.00 0.00 3.02
6469 7467 3.336138 AGTTGTTGGTAAGCTCTAGGC 57.664 47.619 0.00 0.00 42.19 3.93
6500 7501 2.093553 GCTCTCTGACAGCTTGGAAGAT 60.094 50.000 0.00 0.00 33.75 2.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.369052 CCATTGTGCCTGCTTCATCAATT 60.369 43.478 0.00 0.00 0.00 2.32
1 2 2.167693 CCATTGTGCCTGCTTCATCAAT 59.832 45.455 0.00 0.00 0.00 2.57
2 3 1.546923 CCATTGTGCCTGCTTCATCAA 59.453 47.619 0.00 0.00 0.00 2.57
3 4 1.179152 CCATTGTGCCTGCTTCATCA 58.821 50.000 0.00 0.00 0.00 3.07
4 5 0.458669 CCCATTGTGCCTGCTTCATC 59.541 55.000 0.00 0.00 0.00 2.92
5 6 1.610554 GCCCATTGTGCCTGCTTCAT 61.611 55.000 0.00 0.00 0.00 2.57
6 7 2.277591 GCCCATTGTGCCTGCTTCA 61.278 57.895 0.00 0.00 0.00 3.02
7 8 2.575461 GCCCATTGTGCCTGCTTC 59.425 61.111 0.00 0.00 0.00 3.86
8 9 2.999063 GGCCCATTGTGCCTGCTT 60.999 61.111 2.55 0.00 45.70 3.91
22 23 3.165685 TGGCGTGGGTATAGGGCC 61.166 66.667 0.00 0.00 44.00 5.80
68 69 8.346476 TGTTCTTAATTTTTGTTCCATGAACG 57.654 30.769 0.00 0.00 44.55 3.95
74 75 9.712305 TTCACTTTGTTCTTAATTTTTGTTCCA 57.288 25.926 0.00 0.00 0.00 3.53
117 119 1.501169 CAATCAGTCCATCGCGCATA 58.499 50.000 8.75 0.00 0.00 3.14
143 168 6.403615 CGCTTGTTGTAGACTCGAAAATATC 58.596 40.000 0.00 0.00 0.00 1.63
167 192 3.548818 GCATCGATCTTAACCCACATTGC 60.549 47.826 0.00 0.00 0.00 3.56
229 256 0.593008 CATTTGTGATGGCGATGGCG 60.593 55.000 0.00 0.00 41.24 5.69
254 281 2.739913 GTTGGTTACGCTTCTACATGCA 59.260 45.455 0.00 0.00 0.00 3.96
333 668 2.151202 CAACCAATGCTCAGGTACGTT 58.849 47.619 0.00 0.00 37.07 3.99
335 670 1.808411 ACAACCAATGCTCAGGTACG 58.192 50.000 0.00 0.00 37.07 3.67
336 671 3.146066 TGAACAACCAATGCTCAGGTAC 58.854 45.455 0.00 0.00 37.07 3.34
337 672 3.500448 TGAACAACCAATGCTCAGGTA 57.500 42.857 0.00 0.00 37.07 3.08
372 708 5.313712 ACAATTCTGACGTTATTGGACCTT 58.686 37.500 14.10 0.00 34.40 3.50
374 710 5.622770 AACAATTCTGACGTTATTGGACC 57.377 39.130 14.10 0.00 34.40 4.46
391 727 6.364706 CACACGCAATGGTTTGTATAAACAAT 59.635 34.615 15.80 8.13 46.28 2.71
459 833 9.479278 GCTTTTTCAGTTTTACGAGATCTTATC 57.521 33.333 0.00 0.00 0.00 1.75
460 834 8.999431 TGCTTTTTCAGTTTTACGAGATCTTAT 58.001 29.630 0.00 0.00 0.00 1.73
461 835 8.373048 TGCTTTTTCAGTTTTACGAGATCTTA 57.627 30.769 0.00 0.00 0.00 2.10
462 836 7.259290 TGCTTTTTCAGTTTTACGAGATCTT 57.741 32.000 0.00 0.00 0.00 2.40
463 837 6.861065 TGCTTTTTCAGTTTTACGAGATCT 57.139 33.333 0.00 0.00 0.00 2.75
464 838 7.591426 ACATTGCTTTTTCAGTTTTACGAGATC 59.409 33.333 0.00 0.00 0.00 2.75
465 839 7.425606 ACATTGCTTTTTCAGTTTTACGAGAT 58.574 30.769 0.00 0.00 0.00 2.75
466 840 6.791303 ACATTGCTTTTTCAGTTTTACGAGA 58.209 32.000 0.00 0.00 0.00 4.04
467 841 8.555166 TTACATTGCTTTTTCAGTTTTACGAG 57.445 30.769 0.00 0.00 0.00 4.18
468 842 8.800031 GTTTACATTGCTTTTTCAGTTTTACGA 58.200 29.630 0.00 0.00 0.00 3.43
469 843 8.803799 AGTTTACATTGCTTTTTCAGTTTTACG 58.196 29.630 0.00 0.00 0.00 3.18
479 853 9.260002 CCACATTCTTAGTTTACATTGCTTTTT 57.740 29.630 0.00 0.00 0.00 1.94
480 854 8.637986 TCCACATTCTTAGTTTACATTGCTTTT 58.362 29.630 0.00 0.00 0.00 2.27
481 855 8.177119 TCCACATTCTTAGTTTACATTGCTTT 57.823 30.769 0.00 0.00 0.00 3.51
482 856 7.665559 TCTCCACATTCTTAGTTTACATTGCTT 59.334 33.333 0.00 0.00 0.00 3.91
483 857 7.119846 GTCTCCACATTCTTAGTTTACATTGCT 59.880 37.037 0.00 0.00 0.00 3.91
515 897 3.198068 TGGATAGCGAGAGTTTGAATGC 58.802 45.455 0.00 0.00 0.00 3.56
551 949 1.994463 CAGGCTGGGCTTAGAAGGT 59.006 57.895 6.61 0.00 0.00 3.50
557 955 1.198094 TGTGTAGCAGGCTGGGCTTA 61.198 55.000 17.64 0.00 42.62 3.09
585 983 1.888436 TACTTCGGCCCAGCTGTGAG 61.888 60.000 13.81 1.89 36.18 3.51
851 1253 2.511600 AAGCGCGCTGGTGGATAC 60.512 61.111 37.24 0.00 0.00 2.24
906 1308 1.547675 GGCAGATGGAGTTGGTGGAAA 60.548 52.381 0.00 0.00 0.00 3.13
923 1325 5.200483 CAAATAGGGGTTTCTAGATTGGCA 58.800 41.667 0.00 0.00 0.00 4.92
957 1363 1.475441 GCCGAATCAGAACGAGCGAG 61.475 60.000 0.00 0.00 0.00 5.03
958 1364 1.516386 GCCGAATCAGAACGAGCGA 60.516 57.895 0.00 0.00 0.00 4.93
962 1368 1.751351 AGATCAGCCGAATCAGAACGA 59.249 47.619 0.00 0.00 0.00 3.85
965 1371 3.551659 CGATCAGATCAGCCGAATCAGAA 60.552 47.826 11.12 0.00 0.00 3.02
967 1373 2.326664 CGATCAGATCAGCCGAATCAG 58.673 52.381 11.12 0.00 0.00 2.90
1218 1624 4.776647 GCAATCGGGTGCGCCAAC 62.777 66.667 19.98 0.00 34.21 3.77
1226 1632 2.832129 TCAGTAAGAGAAGCAATCGGGT 59.168 45.455 0.00 0.00 0.00 5.28
1254 1660 3.543665 TGCAAGCAAAAGCAAGGAAAAT 58.456 36.364 0.00 0.00 37.90 1.82
1382 1794 7.823745 ATCGGCCAGAATAGATTTACAAAAT 57.176 32.000 2.24 0.00 0.00 1.82
1393 1805 0.474184 ACCCCAATCGGCCAGAATAG 59.526 55.000 2.24 0.00 0.00 1.73
1403 1815 0.753262 CCCTCTACAGACCCCAATCG 59.247 60.000 0.00 0.00 0.00 3.34
1610 2022 1.955778 CAAACATTGCAGGTGACCTCA 59.044 47.619 0.00 0.00 0.00 3.86
1651 2063 2.075566 TCCATATGGGAAGCGGCCA 61.076 57.895 21.78 0.00 44.80 5.36
1799 2215 6.927416 AGCAAAGTATTCATCTGAAAATGCA 58.073 32.000 14.94 0.00 37.61 3.96
1808 2224 7.014615 AGTGGTCAAAAAGCAAAGTATTCATCT 59.985 33.333 0.00 0.00 37.07 2.90
1858 2274 8.628630 TGTTGATTTGTCATTCCTAATACACA 57.371 30.769 0.00 0.00 0.00 3.72
2143 2563 2.492881 CAATGCTAATTCACAGGGTGCA 59.507 45.455 0.00 0.00 32.98 4.57
2201 2621 3.855255 TCTGTCCAACCTGATGAAACA 57.145 42.857 0.00 0.00 0.00 2.83
2851 3277 6.883217 AGTAGGAAGAAGACAAGACGTATGTA 59.117 38.462 6.46 0.00 0.00 2.29
2857 3283 4.924462 GGAAAGTAGGAAGAAGACAAGACG 59.076 45.833 0.00 0.00 0.00 4.18
2930 3356 3.370978 ACCGCATTCTGTTCTACAATTCG 59.629 43.478 0.00 0.00 0.00 3.34
2935 3361 2.488937 TCGTACCGCATTCTGTTCTACA 59.511 45.455 0.00 0.00 0.00 2.74
3045 3472 9.989296 TGGGGAGATTTGATTAATTCTAAGAAA 57.011 29.630 0.00 0.00 29.27 2.52
3110 3544 3.314080 CAGTAGCTCAGTGGTAGAGTAGC 59.686 52.174 0.00 0.00 35.55 3.58
3211 3645 2.044806 ATCCCGAAGATCAAGGGCCG 62.045 60.000 13.45 0.00 44.70 6.13
3246 3680 4.286032 AGTCCTAACTAACATGTGCCAAGA 59.714 41.667 0.00 0.00 32.59 3.02
3271 3705 0.185175 AGGTGGGTTTCACTGGTTCC 59.815 55.000 0.00 0.00 45.38 3.62
3303 3738 6.727824 ATTGTTAGATCTCCAAACTGAACG 57.272 37.500 0.00 0.00 0.00 3.95
3324 3759 8.846423 ATCGAGGATACAGGATATAAGGAATT 57.154 34.615 0.00 0.00 41.41 2.17
3511 3946 6.206634 ACAAAAGAGCAATCGGTATCAAAGAA 59.793 34.615 0.00 0.00 0.00 2.52
3591 4026 8.872845 CAAATTTTCATTAACAATCTAGGTGGC 58.127 33.333 0.00 0.00 0.00 5.01
3717 4245 6.183360 TGGATAGAATACTTCCACACTAAGGC 60.183 42.308 0.00 0.00 34.65 4.35
3768 4296 6.040054 ACACCATAAGTCATACGTAGCATACA 59.960 38.462 0.08 0.00 43.24 2.29
3781 4309 8.094548 GCTATTATATCCACACACCATAAGTCA 58.905 37.037 0.00 0.00 0.00 3.41
3903 4432 7.448469 TGATGTCTAGATTTCCGATCAGATACA 59.552 37.037 0.00 0.00 0.00 2.29
3925 4454 1.069204 ACCGCCACTGCTACTATGATG 59.931 52.381 0.00 0.00 34.43 3.07
3929 4458 1.144057 GCACCGCCACTGCTACTAT 59.856 57.895 0.00 0.00 34.43 2.12
3930 4459 2.577059 GCACCGCCACTGCTACTA 59.423 61.111 0.00 0.00 34.43 1.82
3941 4470 2.336400 GAATGAATTCCCGGCACCGC 62.336 60.000 2.83 0.00 38.24 5.68
3942 4471 1.029408 TGAATGAATTCCCGGCACCG 61.029 55.000 2.27 1.02 35.97 4.94
3943 4472 1.067516 CATGAATGAATTCCCGGCACC 59.932 52.381 2.27 0.00 35.97 5.01
3944 4473 1.750778 ACATGAATGAATTCCCGGCAC 59.249 47.619 0.00 0.00 35.97 5.01
3945 4474 1.750206 CACATGAATGAATTCCCGGCA 59.250 47.619 0.00 0.00 35.97 5.69
3946 4475 1.750778 ACACATGAATGAATTCCCGGC 59.249 47.619 0.00 0.00 35.97 6.13
3947 4476 4.199310 ACTACACATGAATGAATTCCCGG 58.801 43.478 0.00 0.00 35.97 5.73
3948 4477 4.875536 TGACTACACATGAATGAATTCCCG 59.124 41.667 0.00 0.00 35.97 5.14
3949 4478 6.757897 TTGACTACACATGAATGAATTCCC 57.242 37.500 0.00 0.00 35.97 3.97
3950 4479 8.461222 TGAATTGACTACACATGAATGAATTCC 58.539 33.333 0.00 0.00 35.97 3.01
3951 4480 9.844790 TTGAATTGACTACACATGAATGAATTC 57.155 29.630 0.00 0.00 37.31 2.17
3953 4482 9.630098 GTTTGAATTGACTACACATGAATGAAT 57.370 29.630 0.00 0.00 0.00 2.57
3954 4483 8.849168 AGTTTGAATTGACTACACATGAATGAA 58.151 29.630 0.00 0.00 0.00 2.57
3955 4484 8.394971 AGTTTGAATTGACTACACATGAATGA 57.605 30.769 0.00 0.00 0.00 2.57
3956 4485 8.908678 CAAGTTTGAATTGACTACACATGAATG 58.091 33.333 0.00 0.00 0.00 2.67
3957 4486 8.632679 ACAAGTTTGAATTGACTACACATGAAT 58.367 29.630 0.00 0.00 0.00 2.57
3958 4487 7.914871 CACAAGTTTGAATTGACTACACATGAA 59.085 33.333 0.00 0.00 0.00 2.57
3959 4488 7.066887 ACACAAGTTTGAATTGACTACACATGA 59.933 33.333 0.00 0.00 0.00 3.07
3960 4489 7.195646 ACACAAGTTTGAATTGACTACACATG 58.804 34.615 0.00 0.00 0.00 3.21
3961 4490 7.333528 ACACAAGTTTGAATTGACTACACAT 57.666 32.000 0.00 0.00 0.00 3.21
3962 4491 6.751514 ACACAAGTTTGAATTGACTACACA 57.248 33.333 0.00 0.00 0.00 3.72
3963 4492 7.916552 ACTACACAAGTTTGAATTGACTACAC 58.083 34.615 0.00 0.00 33.35 2.90
3964 4493 7.766738 TGACTACACAAGTTTGAATTGACTACA 59.233 33.333 0.00 0.00 39.07 2.74
3965 4494 8.138365 TGACTACACAAGTTTGAATTGACTAC 57.862 34.615 0.00 0.00 39.07 2.73
3966 4495 8.902540 ATGACTACACAAGTTTGAATTGACTA 57.097 30.769 0.00 0.00 39.07 2.59
3967 4496 7.807977 ATGACTACACAAGTTTGAATTGACT 57.192 32.000 0.00 0.00 39.07 3.41
3968 4497 7.740346 CGTATGACTACACAAGTTTGAATTGAC 59.260 37.037 0.00 0.00 39.07 3.18
3969 4498 7.439955 ACGTATGACTACACAAGTTTGAATTGA 59.560 33.333 0.00 0.00 39.07 2.57
3970 4499 7.572759 ACGTATGACTACACAAGTTTGAATTG 58.427 34.615 0.00 0.00 39.07 2.32
3971 4500 7.724305 ACGTATGACTACACAAGTTTGAATT 57.276 32.000 0.00 0.00 39.07 2.17
3972 4501 8.869897 CATACGTATGACTACACAAGTTTGAAT 58.130 33.333 27.88 0.00 39.07 2.57
3973 4502 7.868922 ACATACGTATGACTACACAAGTTTGAA 59.131 33.333 35.81 0.00 39.07 2.69
3974 4503 7.372714 ACATACGTATGACTACACAAGTTTGA 58.627 34.615 35.81 0.00 39.07 2.69
3975 4504 7.576750 ACATACGTATGACTACACAAGTTTG 57.423 36.000 35.81 10.78 39.07 2.93
3976 4505 9.865321 AATACATACGTATGACTACACAAGTTT 57.135 29.630 35.81 15.15 36.50 2.66
3977 4506 9.865321 AAATACATACGTATGACTACACAAGTT 57.135 29.630 35.81 15.33 36.50 2.66
3980 4509 9.437045 CGTAAATACATACGTATGACTACACAA 57.563 33.333 35.81 14.10 42.73 3.33
3981 4510 8.825745 TCGTAAATACATACGTATGACTACACA 58.174 33.333 35.81 17.77 46.57 3.72
3982 4511 9.817365 ATCGTAAATACATACGTATGACTACAC 57.183 33.333 35.81 24.73 46.57 2.90
4028 4557 9.842775 ACACATCAAGAACATCATATAATGAGT 57.157 29.630 0.00 0.00 43.53 3.41
4035 4564 9.842775 AATGACTACACATCAAGAACATCATAT 57.157 29.630 0.00 0.00 0.00 1.78
4036 4565 9.671279 AAATGACTACACATCAAGAACATCATA 57.329 29.630 0.00 0.00 0.00 2.15
4037 4566 8.456471 CAAATGACTACACATCAAGAACATCAT 58.544 33.333 0.00 0.00 0.00 2.45
4038 4567 7.661027 TCAAATGACTACACATCAAGAACATCA 59.339 33.333 0.00 0.00 0.00 3.07
4039 4568 7.959651 GTCAAATGACTACACATCAAGAACATC 59.040 37.037 6.30 0.00 41.65 3.06
4040 4569 7.810658 GTCAAATGACTACACATCAAGAACAT 58.189 34.615 6.30 0.00 41.65 2.71
4041 4570 7.189693 GTCAAATGACTACACATCAAGAACA 57.810 36.000 6.30 0.00 41.65 3.18
4056 4585 1.334556 TGTGCTGTGCAGTCAAATGAC 59.665 47.619 5.40 5.40 40.08 3.06
4057 4586 1.677942 TGTGCTGTGCAGTCAAATGA 58.322 45.000 0.00 0.00 40.08 2.57
4058 4587 2.324860 CATGTGCTGTGCAGTCAAATG 58.675 47.619 10.21 10.21 40.08 2.32
4059 4588 1.336517 GCATGTGCTGTGCAGTCAAAT 60.337 47.619 0.00 0.00 40.08 2.32
4060 4589 0.031043 GCATGTGCTGTGCAGTCAAA 59.969 50.000 0.00 0.00 40.08 2.69
4061 4590 1.102222 TGCATGTGCTGTGCAGTCAA 61.102 50.000 6.55 0.00 46.76 3.18
4062 4591 1.526455 TGCATGTGCTGTGCAGTCA 60.526 52.632 6.55 2.14 46.76 3.41
4063 4592 3.347168 TGCATGTGCTGTGCAGTC 58.653 55.556 6.55 0.00 46.76 3.51
4067 4596 2.501223 AAGCCATGCATGTGCTGTGC 62.501 55.000 30.71 22.94 42.66 4.57
4068 4597 0.457853 GAAGCCATGCATGTGCTGTG 60.458 55.000 30.71 15.90 42.66 3.66
4069 4598 1.888018 GAAGCCATGCATGTGCTGT 59.112 52.632 30.71 23.09 42.66 4.40
4070 4599 1.226575 CGAAGCCATGCATGTGCTG 60.227 57.895 30.71 20.62 42.66 4.41
4071 4600 3.193757 CGAAGCCATGCATGTGCT 58.806 55.556 27.05 27.05 42.66 4.40
4083 4612 1.212616 CTACTATGCAGTGGCGAAGC 58.787 55.000 0.00 0.00 45.03 3.86
4084 4613 1.539065 CCCTACTATGCAGTGGCGAAG 60.539 57.143 0.00 0.00 45.35 3.79
4085 4614 0.464036 CCCTACTATGCAGTGGCGAA 59.536 55.000 0.00 0.00 45.35 4.70
4086 4615 0.686441 ACCCTACTATGCAGTGGCGA 60.686 55.000 0.00 0.00 45.35 5.54
4087 4616 1.037493 TACCCTACTATGCAGTGGCG 58.963 55.000 0.00 0.00 45.35 5.69
4088 4617 3.771577 ATTACCCTACTATGCAGTGGC 57.228 47.619 0.00 0.00 36.14 5.01
4089 4618 5.801531 TGTATTACCCTACTATGCAGTGG 57.198 43.478 0.00 0.00 36.14 4.00
4090 4619 7.014326 TCTCTTGTATTACCCTACTATGCAGTG 59.986 40.741 0.00 0.00 36.14 3.66
4091 4620 7.014422 GTCTCTTGTATTACCCTACTATGCAGT 59.986 40.741 0.00 0.00 38.91 4.40
4092 4621 7.014326 TGTCTCTTGTATTACCCTACTATGCAG 59.986 40.741 0.00 0.00 0.00 4.41
4093 4622 6.837048 TGTCTCTTGTATTACCCTACTATGCA 59.163 38.462 0.00 0.00 0.00 3.96
4094 4623 7.014422 AGTGTCTCTTGTATTACCCTACTATGC 59.986 40.741 0.00 0.00 0.00 3.14
4095 4624 8.353684 CAGTGTCTCTTGTATTACCCTACTATG 58.646 40.741 0.00 0.00 0.00 2.23
4096 4625 7.014422 GCAGTGTCTCTTGTATTACCCTACTAT 59.986 40.741 0.00 0.00 0.00 2.12
4242 4772 1.132643 GAGGCGAACATCGTAGTCAGT 59.867 52.381 1.45 0.00 42.81 3.41
4250 4780 1.656095 GAGAACAAGAGGCGAACATCG 59.344 52.381 0.00 0.00 43.89 3.84
4258 4788 3.305398 TCGAGAAAGAGAACAAGAGGC 57.695 47.619 0.00 0.00 0.00 4.70
4996 5531 3.011818 TCAATGCACTGATACCTGCAAG 58.988 45.455 0.00 0.00 46.18 4.01
5015 5550 6.126863 AGAGGGTACAACAAATCATTCTCA 57.873 37.500 0.00 0.00 0.00 3.27
5172 5707 3.248602 CCTGATTCGCTACATAAACCAGC 59.751 47.826 0.00 0.00 0.00 4.85
5256 5791 5.746990 ACAGCTAATGACCAACTTCTAGT 57.253 39.130 0.00 0.00 0.00 2.57
5257 5792 6.876257 AGAAACAGCTAATGACCAACTTCTAG 59.124 38.462 0.00 0.00 0.00 2.43
5266 5905 3.366374 GCAACCAGAAACAGCTAATGACC 60.366 47.826 0.00 0.00 0.00 4.02
5299 5938 8.814038 ACCAGAAACAGCTAATCTCAATTAAT 57.186 30.769 0.00 0.00 0.00 1.40
5300 5939 8.514594 CAACCAGAAACAGCTAATCTCAATTAA 58.485 33.333 0.00 0.00 0.00 1.40
5301 5940 7.362056 GCAACCAGAAACAGCTAATCTCAATTA 60.362 37.037 0.00 0.00 0.00 1.40
5302 5941 6.571150 GCAACCAGAAACAGCTAATCTCAATT 60.571 38.462 0.00 0.00 0.00 2.32
5303 5942 5.105997 GCAACCAGAAACAGCTAATCTCAAT 60.106 40.000 0.00 0.00 0.00 2.57
5304 5943 4.216257 GCAACCAGAAACAGCTAATCTCAA 59.784 41.667 0.00 0.00 0.00 3.02
5305 5944 3.753272 GCAACCAGAAACAGCTAATCTCA 59.247 43.478 0.00 0.00 0.00 3.27
5306 5945 4.006319 AGCAACCAGAAACAGCTAATCTC 58.994 43.478 0.00 0.00 33.06 2.75
5307 5946 4.026356 AGCAACCAGAAACAGCTAATCT 57.974 40.909 0.00 0.00 33.06 2.40
5308 5947 4.773323 AAGCAACCAGAAACAGCTAATC 57.227 40.909 0.00 0.00 34.66 1.75
5309 5948 6.840780 AATAAGCAACCAGAAACAGCTAAT 57.159 33.333 0.00 0.00 34.66 1.73
5310 5949 6.648879 AAATAAGCAACCAGAAACAGCTAA 57.351 33.333 0.00 0.00 34.66 3.09
5311 5950 6.648879 AAAATAAGCAACCAGAAACAGCTA 57.351 33.333 0.00 0.00 34.66 3.32
5312 5951 5.535753 AAAATAAGCAACCAGAAACAGCT 57.464 34.783 0.00 0.00 37.08 4.24
5337 5976 9.905713 ACCAGAAACAGCTAATCTCAATTAATA 57.094 29.630 0.00 0.00 0.00 0.98
5338 5977 8.814038 ACCAGAAACAGCTAATCTCAATTAAT 57.186 30.769 0.00 0.00 0.00 1.40
5339 5978 8.514594 CAACCAGAAACAGCTAATCTCAATTAA 58.485 33.333 0.00 0.00 0.00 1.40
5340 5979 7.362056 GCAACCAGAAACAGCTAATCTCAATTA 60.362 37.037 0.00 0.00 0.00 1.40
5548 6187 2.480416 CCGTCAGATACTGGAGCTTCAC 60.480 54.545 0.00 0.00 31.51 3.18
5861 6510 9.405587 GCAGCAACTTCTACAATAAAAATTGTA 57.594 29.630 9.82 9.82 43.69 2.41
5862 6511 8.143835 AGCAGCAACTTCTACAATAAAAATTGT 58.856 29.630 8.63 8.63 45.64 2.71
5863 6512 8.524870 AGCAGCAACTTCTACAATAAAAATTG 57.475 30.769 0.00 0.00 37.54 2.32
5864 6513 9.196552 GAAGCAGCAACTTCTACAATAAAAATT 57.803 29.630 10.55 0.00 42.32 1.82
5865 6514 8.359642 TGAAGCAGCAACTTCTACAATAAAAAT 58.640 29.630 16.72 0.00 45.20 1.82
5866 6515 7.711846 TGAAGCAGCAACTTCTACAATAAAAA 58.288 30.769 16.72 0.00 45.20 1.94
5867 6516 7.270757 TGAAGCAGCAACTTCTACAATAAAA 57.729 32.000 16.72 0.00 45.20 1.52
5882 6531 0.956633 CCAAAGAGCTTGAAGCAGCA 59.043 50.000 20.45 0.00 45.56 4.41
5883 6532 0.243095 CCCAAAGAGCTTGAAGCAGC 59.757 55.000 20.45 10.80 45.56 5.25
5904 6553 5.047943 TCACTTCAAGTCTAGTTAGTCAGCC 60.048 44.000 0.00 0.00 0.00 4.85
5912 6561 6.166982 GGCACTATTCACTTCAAGTCTAGTT 58.833 40.000 0.00 0.00 0.00 2.24
5913 6562 5.246203 TGGCACTATTCACTTCAAGTCTAGT 59.754 40.000 0.00 0.00 0.00 2.57
5917 6566 3.126000 GCTGGCACTATTCACTTCAAGTC 59.874 47.826 0.00 0.00 0.00 3.01
5919 6568 3.126514 CAGCTGGCACTATTCACTTCAAG 59.873 47.826 5.57 0.00 0.00 3.02
5925 6576 1.826385 AACCAGCTGGCACTATTCAC 58.174 50.000 33.06 0.00 39.32 3.18
5932 6583 2.068519 GCATTTTTAACCAGCTGGCAC 58.931 47.619 33.06 7.64 39.32 5.01
5934 6585 1.001860 TGGCATTTTTAACCAGCTGGC 59.998 47.619 33.06 14.67 39.32 4.85
5951 6602 1.265365 GATTAAGATGCTCCGCTTGGC 59.735 52.381 0.00 0.00 0.00 4.52
5952 6603 1.528586 CGATTAAGATGCTCCGCTTGG 59.471 52.381 0.00 0.00 0.00 3.61
5953 6604 1.070309 GCGATTAAGATGCTCCGCTTG 60.070 52.381 0.00 0.00 39.57 4.01
5954 6605 1.221414 GCGATTAAGATGCTCCGCTT 58.779 50.000 0.00 0.00 39.57 4.68
5956 6607 0.939577 TCGCGATTAAGATGCTCCGC 60.940 55.000 3.71 0.00 39.33 5.54
5957 6608 1.487482 TTCGCGATTAAGATGCTCCG 58.513 50.000 10.88 0.00 0.00 4.63
5958 6609 3.944422 TTTTCGCGATTAAGATGCTCC 57.056 42.857 10.88 0.00 0.00 4.70
5976 6627 4.712122 TCAAACCTTGCGAGTTCTTTTT 57.288 36.364 0.00 0.00 0.00 1.94
5979 6630 3.253432 GGATTCAAACCTTGCGAGTTCTT 59.747 43.478 0.00 0.00 0.00 2.52
5980 6631 2.814336 GGATTCAAACCTTGCGAGTTCT 59.186 45.455 0.00 0.00 0.00 3.01
5981 6632 2.814336 AGGATTCAAACCTTGCGAGTTC 59.186 45.455 0.00 0.00 33.55 3.01
5991 6681 3.165071 ACACATTCCCAGGATTCAAACC 58.835 45.455 0.00 0.00 0.00 3.27
6010 6700 1.259142 TACATTTCTCGGCGGGGACA 61.259 55.000 7.05 0.00 0.00 4.02
6013 6703 0.177141 TCTTACATTTCTCGGCGGGG 59.823 55.000 7.05 0.00 0.00 5.73
6019 6710 4.993584 AGGCAGCATATCTTACATTTCTCG 59.006 41.667 0.00 0.00 0.00 4.04
6028 6719 2.369860 CCTCCACAGGCAGCATATCTTA 59.630 50.000 0.00 0.00 30.98 2.10
6032 6723 1.442773 ATCCTCCACAGGCAGCATAT 58.557 50.000 0.00 0.00 40.12 1.78
6033 6724 1.216064 AATCCTCCACAGGCAGCATA 58.784 50.000 0.00 0.00 40.12 3.14
6053 6744 1.218047 GCATCTACAGTGGCACCGA 59.782 57.895 15.27 6.50 0.00 4.69
6060 6751 2.830104 TGCTGCTATGCATCTACAGTG 58.170 47.619 19.07 0.00 38.13 3.66
6097 6788 1.202604 TGACAACCTCGGAGGAAACAC 60.203 52.381 30.13 15.99 37.67 3.32
6103 6794 1.216710 GAGCTGACAACCTCGGAGG 59.783 63.158 22.40 22.40 42.49 4.30
6104 6795 0.108898 CAGAGCTGACAACCTCGGAG 60.109 60.000 0.00 0.00 33.39 4.63
6105 6796 1.967535 CAGAGCTGACAACCTCGGA 59.032 57.895 0.00 0.00 33.39 4.55
6108 6799 2.292103 CTAGCAGAGCTGACAACCTC 57.708 55.000 0.85 0.00 40.10 3.85
6153 6847 2.100584 TCAACACGCAATCCAAAGCTTT 59.899 40.909 5.69 5.69 0.00 3.51
6166 6860 1.615107 GGTGCTACGTCTCAACACGC 61.615 60.000 0.00 0.00 43.93 5.34
6175 6869 3.876300 CAGCCAAGGTGCTACGTC 58.124 61.111 0.00 0.00 40.32 4.34
6182 6876 2.882876 GCATGAGCAGCCAAGGTG 59.117 61.111 0.00 0.00 41.58 4.00
6257 7255 1.762957 CGGTAGATTCCCAGGTGATGT 59.237 52.381 0.00 0.00 0.00 3.06
6267 7265 1.520787 CCACGCACCGGTAGATTCC 60.521 63.158 6.87 0.00 0.00 3.01
6315 7313 5.423886 GGACAACACAAATCCAAAGGAAAA 58.576 37.500 0.00 0.00 34.34 2.29
6361 7359 5.963176 TCTCTTCTGCTAGATGATGCTAG 57.037 43.478 0.00 0.00 40.62 3.42
6362 7360 6.721704 TTTCTCTTCTGCTAGATGATGCTA 57.278 37.500 0.00 0.00 29.56 3.49
6363 7361 5.611128 TTTCTCTTCTGCTAGATGATGCT 57.389 39.130 0.00 0.00 29.56 3.79
6364 7362 5.179742 CCATTTCTCTTCTGCTAGATGATGC 59.820 44.000 0.00 0.00 29.56 3.91
6365 7363 6.522946 TCCATTTCTCTTCTGCTAGATGATG 58.477 40.000 0.00 0.00 29.56 3.07
6369 7367 7.201803 GCATTTTCCATTTCTCTTCTGCTAGAT 60.202 37.037 0.00 0.00 0.00 1.98
6370 7368 6.094603 GCATTTTCCATTTCTCTTCTGCTAGA 59.905 38.462 0.00 0.00 0.00 2.43
6371 7369 6.095160 AGCATTTTCCATTTCTCTTCTGCTAG 59.905 38.462 0.00 0.00 34.71 3.42
6372 7370 5.948162 AGCATTTTCCATTTCTCTTCTGCTA 59.052 36.000 0.00 0.00 34.71 3.49
6373 7371 4.771054 AGCATTTTCCATTTCTCTTCTGCT 59.229 37.500 0.00 0.00 0.00 4.24
6374 7372 5.069501 AGCATTTTCCATTTCTCTTCTGC 57.930 39.130 0.00 0.00 0.00 4.26
6375 7373 5.122869 TCGAGCATTTTCCATTTCTCTTCTG 59.877 40.000 0.00 0.00 0.00 3.02
6376 7374 5.248640 TCGAGCATTTTCCATTTCTCTTCT 58.751 37.500 0.00 0.00 0.00 2.85
6377 7375 5.551760 TCGAGCATTTTCCATTTCTCTTC 57.448 39.130 0.00 0.00 0.00 2.87
6378 7376 4.142513 GCTCGAGCATTTTCCATTTCTCTT 60.143 41.667 31.91 0.00 41.59 2.85
6379 7377 3.376546 GCTCGAGCATTTTCCATTTCTCT 59.623 43.478 31.91 0.00 41.59 3.10
6380 7378 3.488216 GGCTCGAGCATTTTCCATTTCTC 60.488 47.826 36.27 11.91 44.36 2.87
6381 7379 2.424956 GGCTCGAGCATTTTCCATTTCT 59.575 45.455 36.27 0.00 44.36 2.52
6382 7380 2.480244 GGGCTCGAGCATTTTCCATTTC 60.480 50.000 36.27 15.55 44.36 2.17
6383 7381 1.478105 GGGCTCGAGCATTTTCCATTT 59.522 47.619 36.27 0.00 44.36 2.32
6402 7400 1.926511 GAAGTCAATGGGCGTGCAGG 61.927 60.000 1.01 1.01 0.00 4.85
6428 7426 1.374252 GACCGTGTCAATGGCGTCT 60.374 57.895 0.00 0.00 35.67 4.18
6432 7430 0.389426 ACTACGACCGTGTCAATGGC 60.389 55.000 5.20 0.00 35.67 4.40
6439 7437 0.461135 ACCAACAACTACGACCGTGT 59.539 50.000 5.20 0.00 0.00 4.49
6469 7467 3.540014 CAGAGAGCGCGCTGAACG 61.540 66.667 41.82 20.38 43.64 3.95
6472 7470 3.333898 CTGTCAGAGAGCGCGCTGA 62.334 63.158 41.82 27.49 46.60 4.26
6473 7471 2.879933 CTGTCAGAGAGCGCGCTG 60.880 66.667 41.82 25.43 42.49 5.18
6500 7501 3.181475 CCGGGAAAGATTCTTCTCATCGA 60.181 47.826 0.00 0.00 0.00 3.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.