Multiple sequence alignment - TraesCS4B01G235500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G235500 chr4B 100.000 6161 0 0 1 6161 491839087 491832927 0.000000e+00 11378.0
1 TraesCS4B01G235500 chr4D 92.892 3461 140 45 1970 5393 398911708 398908317 0.000000e+00 4931.0
2 TraesCS4B01G235500 chr4D 90.670 1404 71 24 587 1968 398913117 398911752 0.000000e+00 1812.0
3 TraesCS4B01G235500 chr4D 92.200 500 25 8 21 514 398913606 398913115 0.000000e+00 695.0
4 TraesCS4B01G235500 chr4D 87.636 275 22 7 5496 5769 398908319 398908056 6.000000e-80 309.0
5 TraesCS4B01G235500 chr4D 84.483 174 15 5 5764 5928 398907961 398907791 1.780000e-35 161.0
6 TraesCS4B01G235500 chr4A 92.372 2858 141 37 1970 4783 56270072 56267248 0.000000e+00 3999.0
7 TraesCS4B01G235500 chr4A 86.866 1439 94 51 583 1968 56271533 56270137 0.000000e+00 1522.0
8 TraesCS4B01G235500 chr4A 85.938 576 54 19 4837 5393 56267262 56266695 1.910000e-164 590.0
9 TraesCS4B01G235500 chr4A 87.843 510 17 11 1953 2438 557106815 557107303 1.940000e-154 556.0
10 TraesCS4B01G235500 chr4A 97.030 303 9 0 2480 2782 557107306 557107608 1.530000e-140 510.0
11 TraesCS4B01G235500 chr4A 90.494 263 18 2 21 277 56271979 56271718 2.130000e-89 340.0
12 TraesCS4B01G235500 chr4A 85.401 274 22 7 5496 5768 56266697 56266441 1.020000e-67 268.0
13 TraesCS4B01G235500 chr4A 87.500 224 22 3 1010 1233 597320840 597320623 2.850000e-63 254.0
14 TraesCS4B01G235500 chr4A 84.795 171 18 5 5764 5928 56266346 56266178 1.370000e-36 165.0
15 TraesCS4B01G235500 chr4A 90.000 60 5 1 4779 4837 695685609 695685668 6.620000e-10 76.8
16 TraesCS4B01G235500 chr3A 92.216 501 7 6 1954 2438 411272691 411272207 0.000000e+00 680.0
17 TraesCS4B01G235500 chr3A 94.330 388 11 1 2480 2856 193871520 193871133 8.900000e-163 584.0
18 TraesCS4B01G235500 chr3A 88.039 510 16 11 1953 2438 193872011 193871523 4.170000e-156 562.0
19 TraesCS4B01G235500 chr3A 90.085 353 4 2 2515 2856 411272189 411271857 4.410000e-116 429.0
20 TraesCS4B01G235500 chr3A 94.624 93 5 0 2489 2581 193871122 193871030 1.790000e-30 145.0
21 TraesCS4B01G235500 chr5A 94.588 388 10 1 2480 2856 510198364 510198751 1.910000e-164 590.0
22 TraesCS4B01G235500 chr5A 88.039 510 16 11 1953 2438 510197873 510198361 4.170000e-156 562.0
23 TraesCS4B01G235500 chr5A 87.500 64 5 3 547 609 687871721 687871660 3.080000e-08 71.3
24 TraesCS4B01G235500 chr5A 91.892 37 3 0 4784 4820 414931442 414931478 1.100000e-02 52.8
25 TraesCS4B01G235500 chr5B 93.557 388 14 1 2480 2856 397293014 397292627 8.960000e-158 568.0
26 TraesCS4B01G235500 chr5B 88.224 501 21 9 1954 2438 397293495 397293017 1.160000e-156 564.0
27 TraesCS4B01G235500 chr5B 94.262 122 6 1 5378 5499 603798244 603798364 1.050000e-42 185.0
28 TraesCS4B01G235500 chr5B 95.575 113 5 0 5387 5499 281433896 281433784 1.360000e-41 182.0
29 TraesCS4B01G235500 chr5B 93.913 115 6 1 5385 5498 90515274 90515388 8.210000e-39 172.0
30 TraesCS4B01G235500 chr5B 90.840 131 9 3 5379 5508 172134568 172134440 8.210000e-39 172.0
31 TraesCS4B01G235500 chr6D 86.717 527 10 9 1954 2438 79969671 79970179 1.180000e-146 531.0
32 TraesCS4B01G235500 chr6D 99.240 263 2 0 2515 2777 79970197 79970459 5.590000e-130 475.0
33 TraesCS4B01G235500 chr7B 84.564 447 47 12 1010 1454 640919619 640920045 2.050000e-114 424.0
34 TraesCS4B01G235500 chr7B 92.857 56 3 1 4783 4837 610089120 610089065 5.120000e-11 80.5
35 TraesCS4B01G235500 chr7B 90.909 55 5 0 4783 4837 609921845 609921791 2.380000e-09 75.0
36 TraesCS4B01G235500 chr7B 90.909 55 5 0 4783 4837 610171927 610171873 2.380000e-09 75.0
37 TraesCS4B01G235500 chr2A 84.830 323 37 7 899 1218 16531632 16531945 1.290000e-81 315.0
38 TraesCS4B01G235500 chr3B 96.396 111 4 0 5390 5500 176634103 176633993 3.790000e-42 183.0
39 TraesCS4B01G235500 chr3B 92.366 131 7 3 5379 5508 217574976 217575104 3.790000e-42 183.0
40 TraesCS4B01G235500 chr3B 95.495 111 5 0 5390 5500 806722654 806722544 1.760000e-40 178.0
41 TraesCS4B01G235500 chr3B 89.231 65 7 0 520 584 622273255 622273191 1.420000e-11 82.4
42 TraesCS4B01G235500 chr3B 91.228 57 4 1 528 584 763936649 763936594 6.620000e-10 76.8
43 TraesCS4B01G235500 chr2B 92.683 123 8 1 5377 5498 766568148 766568270 6.350000e-40 176.0
44 TraesCS4B01G235500 chr6A 90.698 129 10 2 5379 5506 20748389 20748516 2.950000e-38 171.0
45 TraesCS4B01G235500 chr3D 94.340 53 3 0 527 579 153142376 153142324 1.420000e-11 82.4
46 TraesCS4B01G235500 chr5D 92.727 55 4 0 539 593 369424200 369424254 5.120000e-11 80.5
47 TraesCS4B01G235500 chr7A 84.524 84 8 4 503 584 7805499 7805579 1.840000e-10 78.7
48 TraesCS4B01G235500 chr2D 91.379 58 3 2 538 594 17142776 17142720 1.840000e-10 78.7
49 TraesCS4B01G235500 chrUn 90.000 60 5 1 4779 4837 304131050 304131109 6.620000e-10 76.8
50 TraesCS4B01G235500 chr6B 89.831 59 6 0 528 586 437472304 437472362 6.620000e-10 76.8
51 TraesCS4B01G235500 chr6B 91.071 56 4 1 539 594 30051583 30051637 2.380000e-09 75.0
52 TraesCS4B01G235500 chr6B 87.500 64 7 1 4775 4837 715815536 715815473 8.570000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G235500 chr4B 491832927 491839087 6160 True 11378.000000 11378 100.000000 1 6161 1 chr4B.!!$R1 6160
1 TraesCS4B01G235500 chr4D 398907791 398913606 5815 True 1581.600000 4931 89.576200 21 5928 5 chr4D.!!$R1 5907
2 TraesCS4B01G235500 chr4A 56266178 56271979 5801 True 1147.333333 3999 87.644333 21 5928 6 chr4A.!!$R2 5907
3 TraesCS4B01G235500 chr4A 557106815 557107608 793 False 533.000000 556 92.436500 1953 2782 2 chr4A.!!$F2 829
4 TraesCS4B01G235500 chr3A 411271857 411272691 834 True 554.500000 680 91.150500 1954 2856 2 chr3A.!!$R2 902
5 TraesCS4B01G235500 chr3A 193871030 193872011 981 True 430.333333 584 92.331000 1953 2856 3 chr3A.!!$R1 903
6 TraesCS4B01G235500 chr5A 510197873 510198751 878 False 576.000000 590 91.313500 1953 2856 2 chr5A.!!$F2 903
7 TraesCS4B01G235500 chr5B 397292627 397293495 868 True 566.000000 568 90.890500 1954 2856 2 chr5B.!!$R3 902
8 TraesCS4B01G235500 chr6D 79969671 79970459 788 False 503.000000 531 92.978500 1954 2777 2 chr6D.!!$F1 823

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.379316 AAAACCGACAGCACGAAACC 59.621 50.000 0.00 0.0 35.09 3.27 F
1535 1601 0.036577 ACTGCTCTGTCATGCTGTCC 60.037 55.000 0.00 0.0 36.84 4.02 F
1552 1618 0.261991 TCCTCGATTCCTAGCCACCT 59.738 55.000 0.00 0.0 0.00 4.00 F
1894 1963 0.883833 CTTTCTGGTGGTCATGGCAC 59.116 55.000 0.00 0.0 0.00 5.01 F
3580 3796 0.396974 TTGCTTTGTTGGCCTGGTCT 60.397 50.000 3.32 0.0 0.00 3.85 F
3774 3990 2.094130 GGTTGCACCTCAGGTACTACTC 60.094 54.545 8.38 0.0 32.85 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 1661 0.241749 CACATGAATTGCGTGCACCT 59.758 50.000 12.15 0.0 36.99 4.00 R
3239 3454 0.179045 AGTCCAGGTGTGTGAACAGC 60.179 55.000 0.00 0.0 38.30 4.40 R
3438 3653 2.034179 GCAAAGGGCACGTCTTAAGTTT 59.966 45.455 1.63 0.0 43.97 2.66 R
3733 3949 4.906618 ACCACGGTCTTGAGATAATTTGT 58.093 39.130 0.00 0.0 0.00 2.83 R
4387 4614 0.393077 ATGGCCGAGGATTAAGACCG 59.607 55.000 0.00 0.0 0.00 4.79 R
5529 5780 0.763035 ACAAGGAACACCGCCTAGTT 59.237 50.000 0.00 0.0 33.76 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.909957 AAAACCGACAGCACGAAAC 57.090 47.368 0.00 0.00 35.09 2.78
19 20 0.379316 AAAACCGACAGCACGAAACC 59.621 50.000 0.00 0.00 35.09 3.27
107 108 2.355126 ACGCACGTCAGAGCTGTG 60.355 61.111 4.05 4.05 36.70 3.66
127 128 2.204461 TGGAGCGTTTCTGGACCGA 61.204 57.895 0.00 0.00 0.00 4.69
156 157 2.182030 GCGTGTCTTCTCCCTCGG 59.818 66.667 0.00 0.00 0.00 4.63
199 200 4.280436 TCCGCCATTGTTTCTTCTTCTA 57.720 40.909 0.00 0.00 0.00 2.10
291 300 7.172875 AGCGTAGTAGTACATGTATTAGGAGTG 59.827 40.741 9.18 0.53 0.00 3.51
299 308 2.827755 TGTATTAGGAGTGCTGGGTGA 58.172 47.619 0.00 0.00 0.00 4.02
300 309 2.500098 TGTATTAGGAGTGCTGGGTGAC 59.500 50.000 0.00 0.00 0.00 3.67
312 321 1.821753 CTGGGTGACACTCCTACTCAG 59.178 57.143 2.22 0.00 36.67 3.35
328 337 0.894835 TCAGCAACCTACATCGAGCA 59.105 50.000 0.00 0.00 0.00 4.26
339 348 3.902881 ACATCGAGCATCTTCTTCCTT 57.097 42.857 0.00 0.00 0.00 3.36
341 350 3.450457 ACATCGAGCATCTTCTTCCTTCT 59.550 43.478 0.00 0.00 0.00 2.85
357 366 8.017418 TCTTCCTTCTTTAAAATGCTTGGAAA 57.983 30.769 0.00 0.00 31.79 3.13
373 385 4.634012 TGGAAAGCAGTGTACCTACAAT 57.366 40.909 0.00 0.00 38.04 2.71
382 394 5.062308 GCAGTGTACCTACAATTCTTCTTCG 59.938 44.000 0.00 0.00 38.04 3.79
397 409 9.971922 AATTCTTCTTCGTTCAAAATTTGAGAT 57.028 25.926 8.51 0.00 41.38 2.75
408 420 8.598075 GTTCAAAATTTGAGATATGCATGGTTC 58.402 33.333 10.16 3.74 41.38 3.62
411 423 9.158233 CAAAATTTGAGATATGCATGGTTCTTT 57.842 29.630 10.16 0.00 0.00 2.52
414 426 9.976511 AATTTGAGATATGCATGGTTCTTTATG 57.023 29.630 10.16 0.00 0.00 1.90
473 485 4.080919 CACATATGGACCCATGATACGGAT 60.081 45.833 11.61 0.00 37.82 4.18
579 591 8.658499 ACGCTTTTATATTAGTTTACTGAGGG 57.342 34.615 0.00 0.00 0.00 4.30
580 592 8.480501 ACGCTTTTATATTAGTTTACTGAGGGA 58.519 33.333 0.00 0.00 0.00 4.20
581 593 8.979574 CGCTTTTATATTAGTTTACTGAGGGAG 58.020 37.037 0.00 0.00 0.00 4.30
582 594 9.833917 GCTTTTATATTAGTTTACTGAGGGAGT 57.166 33.333 0.00 0.00 38.88 3.85
703 723 6.572519 TCCAAGAGAAAACACCAGAAAAATG 58.427 36.000 0.00 0.00 0.00 2.32
800 837 1.978580 ACGGAACAATCTCCAACTCCT 59.021 47.619 0.00 0.00 34.91 3.69
821 858 3.591835 GGCCGCCTCTCTCTCTCG 61.592 72.222 0.71 0.00 0.00 4.04
850 887 1.123928 GTCTCTCGTCCCAATCCCAT 58.876 55.000 0.00 0.00 0.00 4.00
929 975 2.125753 GAGAGAGCCCACACGCAG 60.126 66.667 0.00 0.00 0.00 5.18
937 983 2.978010 CCACACGCAGACCCAACC 60.978 66.667 0.00 0.00 0.00 3.77
943 989 2.904866 GCAGACCCAACCAACGCA 60.905 61.111 0.00 0.00 0.00 5.24
1271 1327 4.537015 CTCGGAAAGGTGACATGTTTTTC 58.463 43.478 0.00 8.39 0.00 2.29
1272 1328 4.204012 TCGGAAAGGTGACATGTTTTTCT 58.796 39.130 17.66 6.24 0.00 2.52
1273 1329 4.642885 TCGGAAAGGTGACATGTTTTTCTT 59.357 37.500 17.66 10.38 0.00 2.52
1293 1349 3.764237 TTTGCTTACTTCTCCGTCCTT 57.236 42.857 0.00 0.00 0.00 3.36
1301 1357 1.469335 TTCTCCGTCCTTGCGTTCCT 61.469 55.000 0.00 0.00 0.00 3.36
1342 1398 6.039382 GCTCCTGTTTCTTTTAGACTGGAAAA 59.961 38.462 0.00 0.00 39.76 2.29
1343 1399 7.416326 GCTCCTGTTTCTTTTAGACTGGAAAAA 60.416 37.037 0.00 0.00 39.76 1.94
1388 1444 5.371629 CAAGAACGAAGACCGAATTTGTAC 58.628 41.667 0.00 0.00 41.76 2.90
1453 1512 5.129815 AGGGATCAAAATTCCACCATGAATG 59.870 40.000 0.00 0.00 35.21 2.67
1481 1542 7.922505 CGAAGGATCAAGTAGACAATCTAAG 57.077 40.000 0.00 0.00 29.58 2.18
1498 1562 5.272283 TCTAAGAACAAAACACCTCTCGT 57.728 39.130 0.00 0.00 0.00 4.18
1532 1598 0.168348 GCAACTGCTCTGTCATGCTG 59.832 55.000 0.00 0.00 38.21 4.41
1535 1601 0.036577 ACTGCTCTGTCATGCTGTCC 60.037 55.000 0.00 0.00 36.84 4.02
1552 1618 0.261991 TCCTCGATTCCTAGCCACCT 59.738 55.000 0.00 0.00 0.00 4.00
1585 1651 4.499037 AAAGGTCATGTAACGGCTTTTC 57.501 40.909 0.00 0.00 0.00 2.29
1590 1656 4.873827 GGTCATGTAACGGCTTTTCATCTA 59.126 41.667 0.00 0.00 0.00 1.98
1595 1661 4.467082 TGTAACGGCTTTTCATCTAGGGTA 59.533 41.667 0.00 0.00 0.00 3.69
1661 1727 4.748102 GCATGCAGGGAATAATTGTGATTG 59.252 41.667 14.21 0.00 0.00 2.67
1669 1735 6.070078 AGGGAATAATTGTGATTGGTTGCAAT 60.070 34.615 0.59 0.00 33.55 3.56
1716 1782 2.213499 AGGTGAAAGCGAAGTCTGTTG 58.787 47.619 0.00 0.00 40.95 3.33
1720 1786 4.412207 GTGAAAGCGAAGTCTGTTGTTTT 58.588 39.130 0.00 0.00 0.00 2.43
1725 1791 3.190535 AGCGAAGTCTGTTGTTTTTGTGT 59.809 39.130 0.00 0.00 0.00 3.72
1783 1850 6.039717 GGTGTTGCCTAAATATCATGTCATGT 59.960 38.462 12.54 3.37 0.00 3.21
1798 1867 7.735917 TCATGTCATGTAACTCTAAATAGGGG 58.264 38.462 12.54 0.00 0.00 4.79
1799 1868 6.494666 TGTCATGTAACTCTAAATAGGGGG 57.505 41.667 0.00 0.00 0.00 5.40
1829 1898 2.868662 GAATCTCTTCCAAAAAGCCGC 58.131 47.619 0.00 0.00 0.00 6.53
1852 1921 4.278919 CGGTACAAAATTTACCACCCTGTT 59.721 41.667 8.88 0.00 39.29 3.16
1862 1931 1.580942 CACCCTGTTTCCACGCATG 59.419 57.895 0.00 0.00 0.00 4.06
1871 1940 5.392919 CCTGTTTCCACGCATGAATCAATTA 60.393 40.000 0.00 0.00 0.00 1.40
1872 1941 6.206395 TGTTTCCACGCATGAATCAATTAT 57.794 33.333 0.00 0.00 0.00 1.28
1886 1955 6.211184 TGAATCAATTATTGCTTTCTGGTGGT 59.789 34.615 15.86 0.00 0.00 4.16
1893 1962 0.895100 GCTTTCTGGTGGTCATGGCA 60.895 55.000 0.00 0.00 0.00 4.92
1894 1963 0.883833 CTTTCTGGTGGTCATGGCAC 59.116 55.000 0.00 0.00 0.00 5.01
1895 1964 0.888736 TTTCTGGTGGTCATGGCACG 60.889 55.000 0.00 0.00 0.00 5.34
1896 1965 3.434319 CTGGTGGTCATGGCACGC 61.434 66.667 0.00 0.00 0.00 5.34
1897 1966 3.907260 CTGGTGGTCATGGCACGCT 62.907 63.158 0.00 0.00 0.00 5.07
1898 1967 2.672996 GGTGGTCATGGCACGCTT 60.673 61.111 0.00 0.00 0.00 4.68
1899 1968 2.690778 GGTGGTCATGGCACGCTTC 61.691 63.158 0.00 0.00 0.00 3.86
1926 1998 1.377333 GCGGACAGAAAAGAGGGGG 60.377 63.158 0.00 0.00 0.00 5.40
1934 2006 3.463704 ACAGAAAAGAGGGGGAAAGAACT 59.536 43.478 0.00 0.00 0.00 3.01
2150 2301 3.846588 TCTAGTCTTTTCCATGCCCTCTT 59.153 43.478 0.00 0.00 0.00 2.85
2210 2361 5.105473 AGCTTTGCACAATTAATGAGATGCT 60.105 36.000 12.16 0.00 31.65 3.79
2283 2434 9.809096 ACTCCGACAATGATATATCATCAATAC 57.191 33.333 24.96 14.77 46.22 1.89
2461 2659 8.331740 ACAGATCCTCATGAAAATAAAAGGAGA 58.668 33.333 0.00 0.00 36.42 3.71
2574 2772 8.507249 GGTGCATTACTGTTATCTTGGATATTC 58.493 37.037 0.00 0.00 0.00 1.75
2956 3167 1.067060 CGGTTCATACAGAGGATGCGA 59.933 52.381 0.00 0.00 0.00 5.10
3154 3368 4.278170 TGGTTTAATTCTGCTTGTGTGGAG 59.722 41.667 0.00 0.00 0.00 3.86
3192 3406 6.072508 TGGTGTATTTGCTCTCATGTTCTTTC 60.073 38.462 0.00 0.00 0.00 2.62
3193 3407 6.017933 GTGTATTTGCTCTCATGTTCTTTCG 58.982 40.000 0.00 0.00 0.00 3.46
3198 3412 5.348418 TGCTCTCATGTTCTTTCGAAAAG 57.652 39.130 12.41 4.68 0.00 2.27
3239 3454 6.281405 ACGGGTTAGCTTCACATAAATCTAG 58.719 40.000 0.00 0.00 0.00 2.43
3245 3460 6.917217 AGCTTCACATAAATCTAGCTGTTC 57.083 37.500 0.00 0.00 37.56 3.18
3284 3499 9.681692 TTTCAACTGAGAATAATGTTTGACATG 57.318 29.630 0.00 0.00 37.97 3.21
3438 3653 3.419943 TGTATGTGATGGCTGCTTTTCA 58.580 40.909 0.00 0.00 0.00 2.69
3532 3748 8.671384 TTGGGTTTACTGTACTGATATAATGC 57.329 34.615 6.77 0.00 0.00 3.56
3580 3796 0.396974 TTGCTTTGTTGGCCTGGTCT 60.397 50.000 3.32 0.00 0.00 3.85
3733 3949 4.299586 TCCATAGCAAGTGGTGAAATGA 57.700 40.909 2.55 0.00 37.96 2.57
3774 3990 2.094130 GGTTGCACCTCAGGTACTACTC 60.094 54.545 8.38 0.00 32.85 2.59
3778 3994 4.669700 TGCACCTCAGGTACTACTCTAAA 58.330 43.478 0.00 0.00 36.02 1.85
3834 4050 3.648339 TTTCAACTGCCTGATTTCTGC 57.352 42.857 0.00 0.00 0.00 4.26
3850 4066 7.592938 TGATTTCTGCAACGAGATTTTAATGT 58.407 30.769 0.00 0.00 0.00 2.71
4207 4433 8.597662 TTTCCAGTGTAGTGTAATACAGTTTC 57.402 34.615 6.02 1.87 37.24 2.78
4211 4437 9.701098 CCAGTGTAGTGTAATACAGTTTCTTTA 57.299 33.333 6.02 0.00 37.24 1.85
4387 4614 0.107643 GGCCCATTGCTCTACTCTCC 59.892 60.000 0.00 0.00 40.92 3.71
4513 4740 3.525537 GACTGGAGCGAGATTGATTTCA 58.474 45.455 0.00 0.00 0.00 2.69
4619 4847 6.460676 GGCAATGATTAGAAGGAATGGAACTG 60.461 42.308 0.00 0.00 0.00 3.16
4761 4989 3.131933 ACTGTTGGCATACTTGTTTGCAA 59.868 39.130 15.63 0.00 40.66 4.08
4769 4997 4.270808 GCATACTTGTTTGCAAAACTGCTT 59.729 37.500 14.67 0.00 38.72 3.91
4784 5012 7.865889 GCAAAACTGCTTTATGTTAGTACCTTT 59.134 33.333 0.00 0.00 0.00 3.11
4875 5103 3.940209 TCATGAAGTTTTGGCATCCAC 57.060 42.857 0.00 0.00 30.78 4.02
4876 5104 3.229293 TCATGAAGTTTTGGCATCCACA 58.771 40.909 0.00 0.00 30.78 4.17
4919 5147 8.729047 AGTACATGATTTGGGGGTAATATGTAA 58.271 33.333 0.00 0.00 33.25 2.41
4974 5223 3.624777 ACTGGCCATCTTTGGATGTTAG 58.375 45.455 5.51 0.00 46.92 2.34
5035 5284 7.253905 TCTCCTACCTTTGCTAATAAACACT 57.746 36.000 0.00 0.00 0.00 3.55
5136 5385 2.028043 GTCCCCGCGTATTACCGG 59.972 66.667 4.92 0.00 43.97 5.28
5186 5435 2.100584 CGAAGGTGCAGCTAATCTCTCT 59.899 50.000 20.51 0.00 0.00 3.10
5187 5436 3.430098 CGAAGGTGCAGCTAATCTCTCTT 60.430 47.826 20.51 0.00 0.00 2.85
5206 5455 3.057596 TCTTGCACGATGACATTTTTCCC 60.058 43.478 0.00 0.00 0.00 3.97
5212 5461 3.502211 ACGATGACATTTTTCCCTGTGTC 59.498 43.478 0.00 0.00 40.93 3.67
5221 5470 0.538057 TTCCCTGTGTCGGTAGTCGT 60.538 55.000 0.00 0.00 40.32 4.34
5223 5472 0.959372 CCCTGTGTCGGTAGTCGTCT 60.959 60.000 0.00 0.00 40.32 4.18
5224 5473 1.676916 CCCTGTGTCGGTAGTCGTCTA 60.677 57.143 0.00 0.00 40.32 2.59
5239 5489 1.467035 CGTCTACAGTGTTAGCCGGTC 60.467 57.143 0.00 0.00 0.00 4.79
5240 5490 1.542915 GTCTACAGTGTTAGCCGGTCA 59.457 52.381 0.00 0.00 0.00 4.02
5241 5491 1.542915 TCTACAGTGTTAGCCGGTCAC 59.457 52.381 0.00 8.13 0.00 3.67
5244 5494 1.671742 AGTGTTAGCCGGTCACTGG 59.328 57.895 17.68 0.00 40.29 4.00
5265 5516 3.403038 GAATGTGCTGTGTTGGTAGTCT 58.597 45.455 0.00 0.00 0.00 3.24
5298 5549 3.501445 AGGAACGTGTATAGTATCTCCGC 59.499 47.826 0.00 0.00 0.00 5.54
5366 5617 2.420129 GCCCATGTTGATTCGTCCTAGT 60.420 50.000 0.00 0.00 0.00 2.57
5367 5618 3.198068 CCCATGTTGATTCGTCCTAGTG 58.802 50.000 0.00 0.00 0.00 2.74
5390 5641 9.120538 AGTGAAATTGTACATCTTTGTTGTACT 57.879 29.630 13.33 0.00 46.16 2.73
5393 5644 9.525007 GAAATTGTACATCTTTGTTGTACTACG 57.475 33.333 13.33 0.00 46.16 3.51
5394 5645 6.456447 TTGTACATCTTTGTTGTACTACGC 57.544 37.500 13.33 0.00 46.16 4.42
5395 5646 4.925054 TGTACATCTTTGTTGTACTACGCC 59.075 41.667 13.33 0.00 46.16 5.68
5396 5647 3.332034 ACATCTTTGTTGTACTACGCCC 58.668 45.455 3.03 0.00 29.55 6.13
5397 5648 3.007614 ACATCTTTGTTGTACTACGCCCT 59.992 43.478 3.03 0.00 29.55 5.19
5398 5649 3.308438 TCTTTGTTGTACTACGCCCTC 57.692 47.619 3.03 0.00 0.00 4.30
5399 5650 2.028748 TCTTTGTTGTACTACGCCCTCC 60.029 50.000 3.03 0.00 0.00 4.30
5400 5651 0.244450 TTGTTGTACTACGCCCTCCG 59.756 55.000 3.03 0.00 44.21 4.63
5409 5660 2.125269 CGCCCTCCGTTCCGAATT 60.125 61.111 0.00 0.00 0.00 2.17
5410 5661 1.142314 CGCCCTCCGTTCCGAATTA 59.858 57.895 0.00 0.00 0.00 1.40
5411 5662 1.149964 CGCCCTCCGTTCCGAATTAC 61.150 60.000 0.00 0.00 0.00 1.89
5412 5663 0.177373 GCCCTCCGTTCCGAATTACT 59.823 55.000 0.00 0.00 0.00 2.24
5413 5664 1.406477 GCCCTCCGTTCCGAATTACTT 60.406 52.381 0.00 0.00 0.00 2.24
5414 5665 2.277084 CCCTCCGTTCCGAATTACTTG 58.723 52.381 0.00 0.00 0.00 3.16
5415 5666 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
5416 5667 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
5417 5668 2.597305 CTCCGTTCCGAATTACTTGTCG 59.403 50.000 0.00 0.00 37.01 4.35
5418 5669 1.060122 CCGTTCCGAATTACTTGTCGC 59.940 52.381 0.00 0.00 35.93 5.19
5419 5670 1.722464 CGTTCCGAATTACTTGTCGCA 59.278 47.619 0.00 0.00 35.93 5.10
5420 5671 2.471749 CGTTCCGAATTACTTGTCGCAC 60.472 50.000 0.00 0.00 35.93 5.34
5421 5672 2.735134 GTTCCGAATTACTTGTCGCACT 59.265 45.455 0.00 0.00 35.93 4.40
5422 5673 3.034721 TCCGAATTACTTGTCGCACTT 57.965 42.857 0.00 0.00 35.93 3.16
5423 5674 4.177165 TCCGAATTACTTGTCGCACTTA 57.823 40.909 0.00 0.00 35.93 2.24
5424 5675 4.751060 TCCGAATTACTTGTCGCACTTAT 58.249 39.130 0.00 0.00 35.93 1.73
5425 5676 4.565166 TCCGAATTACTTGTCGCACTTATG 59.435 41.667 0.00 0.00 35.93 1.90
5426 5677 4.260212 CCGAATTACTTGTCGCACTTATGG 60.260 45.833 0.00 0.00 35.93 2.74
5427 5678 4.565166 CGAATTACTTGTCGCACTTATGGA 59.435 41.667 0.00 0.00 0.00 3.41
5428 5679 5.234329 CGAATTACTTGTCGCACTTATGGAT 59.766 40.000 0.00 0.00 0.00 3.41
5429 5680 5.991328 ATTACTTGTCGCACTTATGGATG 57.009 39.130 0.00 0.00 0.00 3.51
5430 5681 3.334583 ACTTGTCGCACTTATGGATGT 57.665 42.857 0.00 0.00 0.00 3.06
5431 5682 4.465632 ACTTGTCGCACTTATGGATGTA 57.534 40.909 0.00 0.00 0.00 2.29
5432 5683 5.023533 ACTTGTCGCACTTATGGATGTAT 57.976 39.130 0.00 0.00 0.00 2.29
5433 5684 5.050490 ACTTGTCGCACTTATGGATGTATC 58.950 41.667 0.00 0.00 0.00 2.24
5434 5685 4.664150 TGTCGCACTTATGGATGTATCA 57.336 40.909 0.00 0.00 0.00 2.15
5435 5686 5.017294 TGTCGCACTTATGGATGTATCAA 57.983 39.130 0.00 0.00 0.00 2.57
5436 5687 5.049828 TGTCGCACTTATGGATGTATCAAG 58.950 41.667 0.00 0.00 0.00 3.02
5437 5688 5.163457 TGTCGCACTTATGGATGTATCAAGA 60.163 40.000 0.00 0.00 0.00 3.02
5438 5689 5.928839 GTCGCACTTATGGATGTATCAAGAT 59.071 40.000 0.00 0.00 0.00 2.40
5439 5690 5.928264 TCGCACTTATGGATGTATCAAGATG 59.072 40.000 0.00 0.00 0.00 2.90
5440 5691 5.698089 CGCACTTATGGATGTATCAAGATGT 59.302 40.000 0.00 0.00 0.00 3.06
5441 5692 6.868339 CGCACTTATGGATGTATCAAGATGTA 59.132 38.462 0.00 0.00 0.00 2.29
5442 5693 7.547019 CGCACTTATGGATGTATCAAGATGTAT 59.453 37.037 0.00 0.00 0.00 2.29
5443 5694 9.224267 GCACTTATGGATGTATCAAGATGTATT 57.776 33.333 0.00 0.00 0.00 1.89
5472 5723 9.530633 AGTTCTAGATACATCCATTTTAACGAC 57.469 33.333 0.00 0.00 0.00 4.34
5473 5724 8.477709 GTTCTAGATACATCCATTTTAACGACG 58.522 37.037 0.00 0.00 0.00 5.12
5474 5725 7.933396 TCTAGATACATCCATTTTAACGACGA 58.067 34.615 0.00 0.00 0.00 4.20
5475 5726 8.074370 TCTAGATACATCCATTTTAACGACGAG 58.926 37.037 0.00 0.00 0.00 4.18
5476 5727 6.570692 AGATACATCCATTTTAACGACGAGT 58.429 36.000 0.00 0.00 0.00 4.18
5477 5728 7.709947 AGATACATCCATTTTAACGACGAGTA 58.290 34.615 0.00 0.00 0.00 2.59
5478 5729 8.192774 AGATACATCCATTTTAACGACGAGTAA 58.807 33.333 0.00 0.00 0.00 2.24
5479 5730 8.882415 ATACATCCATTTTAACGACGAGTAAT 57.118 30.769 0.00 0.00 0.00 1.89
5480 5731 7.605410 ACATCCATTTTAACGACGAGTAATT 57.395 32.000 0.00 0.00 0.00 1.40
5481 5732 8.036273 ACATCCATTTTAACGACGAGTAATTT 57.964 30.769 0.00 0.00 0.00 1.82
5482 5733 7.960738 ACATCCATTTTAACGACGAGTAATTTG 59.039 33.333 0.00 1.37 0.00 2.32
5483 5734 6.833839 TCCATTTTAACGACGAGTAATTTGG 58.166 36.000 0.00 9.37 0.00 3.28
5484 5735 6.649973 TCCATTTTAACGACGAGTAATTTGGA 59.350 34.615 0.00 11.22 0.00 3.53
5485 5736 7.172875 TCCATTTTAACGACGAGTAATTTGGAA 59.827 33.333 0.00 0.00 0.00 3.53
5486 5737 7.269724 CCATTTTAACGACGAGTAATTTGGAAC 59.730 37.037 0.00 0.00 0.00 3.62
5487 5738 5.499268 TTAACGACGAGTAATTTGGAACG 57.501 39.130 0.00 0.00 0.00 3.95
5488 5739 2.331194 ACGACGAGTAATTTGGAACGG 58.669 47.619 0.00 0.00 0.00 4.44
5489 5740 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
5490 5741 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
5491 5742 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
5492 5743 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
5493 5744 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
5494 5745 3.532542 GAGTAATTTGGAACGGAGGGAG 58.467 50.000 0.00 0.00 0.00 4.30
5529 5780 2.094700 CGCCTGCTGTTCTAACTAGTGA 60.095 50.000 0.00 0.00 0.00 3.41
5569 5821 0.887933 TACTGATCGTGAGCTGTGCA 59.112 50.000 7.74 0.00 31.53 4.57
5570 5822 0.248565 ACTGATCGTGAGCTGTGCAT 59.751 50.000 0.00 0.00 0.00 3.96
5571 5823 0.651031 CTGATCGTGAGCTGTGCATG 59.349 55.000 0.00 0.00 0.00 4.06
5572 5824 0.037046 TGATCGTGAGCTGTGCATGT 60.037 50.000 0.00 0.00 0.00 3.21
5573 5825 0.372679 GATCGTGAGCTGTGCATGTG 59.627 55.000 0.00 0.00 0.00 3.21
5574 5826 1.642037 ATCGTGAGCTGTGCATGTGC 61.642 55.000 0.00 0.00 42.50 4.57
5580 5832 0.250424 AGCTGTGCATGTGCTGTGTA 60.250 50.000 9.66 0.00 42.66 2.90
5609 5861 7.669089 TCAAATCAGACCACTGTATACCATA 57.331 36.000 0.00 0.00 43.81 2.74
5620 5872 8.660435 ACCACTGTATACCATATTAAGCTGAAT 58.340 33.333 0.90 0.90 0.00 2.57
5681 5933 2.097825 GCTCATCAAATGTGGAGCCTT 58.902 47.619 14.02 0.00 45.31 4.35
5683 5935 3.696051 GCTCATCAAATGTGGAGCCTTAA 59.304 43.478 14.02 0.00 45.31 1.85
5684 5936 4.340381 GCTCATCAAATGTGGAGCCTTAAT 59.660 41.667 14.02 0.00 45.31 1.40
5686 5938 4.889409 TCATCAAATGTGGAGCCTTAATCC 59.111 41.667 0.00 0.00 37.35 3.01
5688 5940 4.934356 TCAAATGTGGAGCCTTAATCCTT 58.066 39.130 0.00 0.00 37.74 3.36
5689 5941 6.073447 TCAAATGTGGAGCCTTAATCCTTA 57.927 37.500 0.00 0.00 37.74 2.69
5690 5942 6.489603 TCAAATGTGGAGCCTTAATCCTTAA 58.510 36.000 0.00 0.00 37.74 1.85
5698 5950 7.287235 GTGGAGCCTTAATCCTTAACTAGAGTA 59.713 40.741 0.00 0.00 37.74 2.59
5702 5954 7.622479 AGCCTTAATCCTTAACTAGAGTACCAA 59.378 37.037 0.00 0.00 0.00 3.67
5719 5971 9.965824 AGAGTACCAATTGATTAAACAAGTTTG 57.034 29.630 7.12 4.94 34.23 2.93
5735 5987 7.696992 ACAAGTTTGTTAGAAAAGAGTCCAA 57.303 32.000 0.00 0.00 38.47 3.53
5736 5988 8.293699 ACAAGTTTGTTAGAAAAGAGTCCAAT 57.706 30.769 0.00 0.00 38.47 3.16
5754 6006 8.560124 AGTCCAATCAGTTTAGAGATCCTATT 57.440 34.615 0.00 0.00 0.00 1.73
5762 6014 9.357161 TCAGTTTAGAGATCCTATTAGAGTTCC 57.643 37.037 0.00 0.00 0.00 3.62
5794 6146 3.213206 TGACTTGTCATGCCTTGTCTT 57.787 42.857 0.00 0.00 0.00 3.01
5804 6156 9.679661 TTGTCATGCCTTGTCTTCTATATAAAA 57.320 29.630 0.00 0.00 0.00 1.52
5806 6158 9.547753 GTCATGCCTTGTCTTCTATATAAAAGA 57.452 33.333 0.00 0.00 0.00 2.52
5820 6172 2.658807 AAAAGACCTGACCCCTCAAC 57.341 50.000 0.00 0.00 0.00 3.18
5856 6208 7.809806 AGAGAGAAATTTTATCGTTTGCCTTTG 59.190 33.333 0.00 0.00 0.00 2.77
5860 6212 7.926018 AGAAATTTTATCGTTTGCCTTTGTCTT 59.074 29.630 0.00 0.00 0.00 3.01
5861 6213 9.187455 GAAATTTTATCGTTTGCCTTTGTCTTA 57.813 29.630 0.00 0.00 0.00 2.10
5862 6214 8.515473 AATTTTATCGTTTGCCTTTGTCTTAC 57.485 30.769 0.00 0.00 0.00 2.34
5866 6218 4.193090 TCGTTTGCCTTTGTCTTACTCAA 58.807 39.130 0.00 0.00 0.00 3.02
5867 6219 4.819630 TCGTTTGCCTTTGTCTTACTCAAT 59.180 37.500 0.00 0.00 0.00 2.57
5868 6220 5.298276 TCGTTTGCCTTTGTCTTACTCAATT 59.702 36.000 0.00 0.00 0.00 2.32
5869 6221 6.483974 TCGTTTGCCTTTGTCTTACTCAATTA 59.516 34.615 0.00 0.00 0.00 1.40
5870 6222 6.797033 CGTTTGCCTTTGTCTTACTCAATTAG 59.203 38.462 0.00 0.00 0.00 1.73
5907 6267 7.837863 AGCAGATCATTTCATCTTGTCAATTT 58.162 30.769 0.00 0.00 30.07 1.82
5912 6274 9.727627 GATCATTTCATCTTGTCAATTTACTCC 57.272 33.333 0.00 0.00 0.00 3.85
5918 6280 7.102993 TCATCTTGTCAATTTACTCCGATGAA 58.897 34.615 12.50 3.24 33.83 2.57
5928 6290 2.002586 ACTCCGATGAAATGTGAAGCG 58.997 47.619 0.00 0.00 0.00 4.68
5929 6291 0.726827 TCCGATGAAATGTGAAGCGC 59.273 50.000 0.00 0.00 0.00 5.92
5930 6292 0.447406 CCGATGAAATGTGAAGCGCA 59.553 50.000 11.47 0.00 0.00 6.09
5938 6300 2.870372 GTGAAGCGCACCATCCAC 59.130 61.111 11.47 4.14 41.78 4.02
5939 6301 1.965930 GTGAAGCGCACCATCCACA 60.966 57.895 11.47 0.00 41.78 4.17
5940 6302 1.672030 TGAAGCGCACCATCCACAG 60.672 57.895 11.47 0.00 0.00 3.66
5941 6303 2.360350 AAGCGCACCATCCACAGG 60.360 61.111 11.47 0.00 0.00 4.00
5942 6304 3.925630 AAGCGCACCATCCACAGGG 62.926 63.158 11.47 0.00 0.00 4.45
5944 6306 4.720902 CGCACCATCCACAGGGCA 62.721 66.667 0.00 0.00 0.00 5.36
5945 6307 2.043652 GCACCATCCACAGGGCAT 60.044 61.111 0.00 0.00 0.00 4.40
5946 6308 2.123428 GCACCATCCACAGGGCATC 61.123 63.158 0.00 0.00 0.00 3.91
5947 6309 1.611419 CACCATCCACAGGGCATCT 59.389 57.895 0.00 0.00 0.00 2.90
5948 6310 0.465097 CACCATCCACAGGGCATCTC 60.465 60.000 0.00 0.00 0.00 2.75
5949 6311 1.227764 CCATCCACAGGGCATCTCG 60.228 63.158 0.00 0.00 0.00 4.04
5950 6312 1.227764 CATCCACAGGGCATCTCGG 60.228 63.158 0.00 0.00 0.00 4.63
5951 6313 1.383109 ATCCACAGGGCATCTCGGA 60.383 57.895 0.00 0.00 0.00 4.55
5952 6314 1.690219 ATCCACAGGGCATCTCGGAC 61.690 60.000 0.00 0.00 29.60 4.79
5953 6315 2.187946 CACAGGGCATCTCGGACC 59.812 66.667 0.00 0.00 35.57 4.46
5954 6316 2.284625 ACAGGGCATCTCGGACCA 60.285 61.111 0.00 0.00 38.98 4.02
5955 6317 2.362369 ACAGGGCATCTCGGACCAG 61.362 63.158 0.00 0.00 38.98 4.00
5956 6318 2.060383 CAGGGCATCTCGGACCAGA 61.060 63.158 0.00 0.00 38.98 3.86
5957 6319 1.074926 AGGGCATCTCGGACCAGAT 60.075 57.895 0.00 0.00 38.98 2.90
5975 6337 7.939784 ACCAGATGTCCCTAAATTTTTAGAC 57.060 36.000 10.87 1.83 42.05 2.59
5976 6338 6.890268 ACCAGATGTCCCTAAATTTTTAGACC 59.110 38.462 10.87 0.97 42.05 3.85
5977 6339 7.119387 CCAGATGTCCCTAAATTTTTAGACCT 58.881 38.462 10.87 0.00 42.05 3.85
5978 6340 7.615757 CCAGATGTCCCTAAATTTTTAGACCTT 59.384 37.037 10.87 0.00 42.05 3.50
5979 6341 8.678199 CAGATGTCCCTAAATTTTTAGACCTTC 58.322 37.037 10.87 2.12 42.05 3.46
5980 6342 8.390921 AGATGTCCCTAAATTTTTAGACCTTCA 58.609 33.333 10.87 4.62 42.05 3.02
5981 6343 8.950007 ATGTCCCTAAATTTTTAGACCTTCAA 57.050 30.769 10.87 0.00 42.05 2.69
5982 6344 8.770010 TGTCCCTAAATTTTTAGACCTTCAAA 57.230 30.769 10.87 0.00 42.05 2.69
5983 6345 8.856103 TGTCCCTAAATTTTTAGACCTTCAAAG 58.144 33.333 10.87 0.00 42.05 2.77
5984 6346 7.813148 GTCCCTAAATTTTTAGACCTTCAAAGC 59.187 37.037 10.87 0.00 42.05 3.51
5985 6347 6.806739 CCCTAAATTTTTAGACCTTCAAAGCG 59.193 38.462 10.87 0.00 42.05 4.68
5986 6348 6.806739 CCTAAATTTTTAGACCTTCAAAGCGG 59.193 38.462 10.87 0.00 42.05 5.52
5987 6349 3.636282 TTTTTAGACCTTCAAAGCGGC 57.364 42.857 0.00 0.00 0.00 6.53
5988 6350 2.561478 TTTAGACCTTCAAAGCGGCT 57.439 45.000 0.00 0.00 0.00 5.52
5989 6351 1.808411 TTAGACCTTCAAAGCGGCTG 58.192 50.000 1.81 0.00 0.00 4.85
5990 6352 0.673644 TAGACCTTCAAAGCGGCTGC 60.674 55.000 10.33 10.33 43.24 5.25
5991 6353 2.982744 GACCTTCAAAGCGGCTGCC 61.983 63.158 15.55 9.11 44.31 4.85
5992 6354 3.752339 CCTTCAAAGCGGCTGCCC 61.752 66.667 15.55 6.06 44.31 5.36
5993 6355 2.985282 CTTCAAAGCGGCTGCCCA 60.985 61.111 15.55 0.00 44.31 5.36
5994 6356 2.283101 TTCAAAGCGGCTGCCCAT 60.283 55.556 15.55 0.00 44.31 4.00
5995 6357 1.880819 CTTCAAAGCGGCTGCCCATT 61.881 55.000 15.55 5.07 44.31 3.16
5996 6358 1.470996 TTCAAAGCGGCTGCCCATTT 61.471 50.000 15.55 11.31 44.31 2.32
5997 6359 1.004679 CAAAGCGGCTGCCCATTTT 60.005 52.632 15.55 5.17 44.31 1.82
5998 6360 1.004679 AAAGCGGCTGCCCATTTTG 60.005 52.632 15.55 0.00 44.31 2.44
5999 6361 2.453379 AAAGCGGCTGCCCATTTTGG 62.453 55.000 15.55 0.00 44.31 3.28
6008 6370 3.287445 CCATTTTGGGCTGGACCG 58.713 61.111 0.00 0.00 40.62 4.79
6009 6371 2.350458 CCATTTTGGGCTGGACCGG 61.350 63.158 0.00 0.00 40.62 5.28
6010 6372 1.606313 CATTTTGGGCTGGACCGGT 60.606 57.895 6.92 6.92 40.62 5.28
6011 6373 1.304134 ATTTTGGGCTGGACCGGTC 60.304 57.895 27.04 27.04 40.62 4.79
6021 6383 2.987547 GACCGGTCCAGACGTCCA 60.988 66.667 24.75 0.00 0.00 4.02
6022 6384 3.278592 GACCGGTCCAGACGTCCAC 62.279 68.421 24.75 6.65 0.00 4.02
6023 6385 3.299977 CCGGTCCAGACGTCCACA 61.300 66.667 13.01 0.00 0.00 4.17
6024 6386 2.732016 CGGTCCAGACGTCCACAA 59.268 61.111 13.01 0.00 0.00 3.33
6025 6387 1.292223 CGGTCCAGACGTCCACAAT 59.708 57.895 13.01 0.00 0.00 2.71
6026 6388 0.736325 CGGTCCAGACGTCCACAATC 60.736 60.000 13.01 0.00 0.00 2.67
6027 6389 0.736325 GGTCCAGACGTCCACAATCG 60.736 60.000 13.01 0.00 0.00 3.34
6028 6390 1.080093 TCCAGACGTCCACAATCGC 60.080 57.895 13.01 0.00 0.00 4.58
6029 6391 2.100631 CCAGACGTCCACAATCGCC 61.101 63.158 13.01 0.00 0.00 5.54
6030 6392 1.079819 CAGACGTCCACAATCGCCT 60.080 57.895 13.01 0.00 0.00 5.52
6031 6393 0.172578 CAGACGTCCACAATCGCCTA 59.827 55.000 13.01 0.00 0.00 3.93
6032 6394 0.892755 AGACGTCCACAATCGCCTAA 59.107 50.000 13.01 0.00 0.00 2.69
6033 6395 1.135083 AGACGTCCACAATCGCCTAAG 60.135 52.381 13.01 0.00 0.00 2.18
6034 6396 0.606604 ACGTCCACAATCGCCTAAGT 59.393 50.000 0.00 0.00 0.00 2.24
6035 6397 1.001633 ACGTCCACAATCGCCTAAGTT 59.998 47.619 0.00 0.00 0.00 2.66
6036 6398 2.073816 CGTCCACAATCGCCTAAGTTT 58.926 47.619 0.00 0.00 0.00 2.66
6037 6399 2.159707 CGTCCACAATCGCCTAAGTTTG 60.160 50.000 0.00 0.00 0.00 2.93
6038 6400 3.071479 GTCCACAATCGCCTAAGTTTGA 58.929 45.455 0.00 0.00 0.00 2.69
6039 6401 3.071479 TCCACAATCGCCTAAGTTTGAC 58.929 45.455 0.00 0.00 0.00 3.18
6040 6402 2.161609 CCACAATCGCCTAAGTTTGACC 59.838 50.000 0.00 0.00 0.00 4.02
6041 6403 2.161609 CACAATCGCCTAAGTTTGACCC 59.838 50.000 0.00 0.00 0.00 4.46
6042 6404 1.743394 CAATCGCCTAAGTTTGACCCC 59.257 52.381 0.00 0.00 0.00 4.95
6043 6405 0.988832 ATCGCCTAAGTTTGACCCCA 59.011 50.000 0.00 0.00 0.00 4.96
6044 6406 0.766131 TCGCCTAAGTTTGACCCCAA 59.234 50.000 0.00 0.00 0.00 4.12
6045 6407 0.879090 CGCCTAAGTTTGACCCCAAC 59.121 55.000 0.00 0.00 30.88 3.77
6046 6408 1.816183 CGCCTAAGTTTGACCCCAACA 60.816 52.381 0.00 0.00 30.88 3.33
6047 6409 2.312390 GCCTAAGTTTGACCCCAACAA 58.688 47.619 0.00 0.00 30.88 2.83
6048 6410 2.296190 GCCTAAGTTTGACCCCAACAAG 59.704 50.000 0.00 0.00 30.88 3.16
6049 6411 2.890945 CCTAAGTTTGACCCCAACAAGG 59.109 50.000 0.00 0.00 30.88 3.61
6050 6412 2.543037 AAGTTTGACCCCAACAAGGT 57.457 45.000 0.00 0.00 41.50 3.50
6054 6416 2.671963 GACCCCAACAAGGTCGGC 60.672 66.667 0.00 0.00 44.16 5.54
6055 6417 4.280019 ACCCCAACAAGGTCGGCC 62.280 66.667 0.00 0.00 28.99 6.13
6057 6419 2.598787 CCCCAACAAGGTCGGCCTA 61.599 63.158 10.18 0.00 46.33 3.93
6058 6420 1.607612 CCCAACAAGGTCGGCCTAT 59.392 57.895 10.18 0.00 46.33 2.57
6059 6421 0.748005 CCCAACAAGGTCGGCCTATG 60.748 60.000 10.18 12.88 46.33 2.23
6060 6422 0.251916 CCAACAAGGTCGGCCTATGA 59.748 55.000 10.18 0.00 46.33 2.15
6061 6423 1.134098 CCAACAAGGTCGGCCTATGAT 60.134 52.381 10.18 1.76 46.33 2.45
6062 6424 1.942657 CAACAAGGTCGGCCTATGATG 59.057 52.381 10.18 6.43 46.33 3.07
6063 6425 0.469917 ACAAGGTCGGCCTATGATGG 59.530 55.000 10.18 0.00 46.33 3.51
6064 6426 0.469917 CAAGGTCGGCCTATGATGGT 59.530 55.000 10.18 0.00 46.33 3.55
6065 6427 0.759346 AAGGTCGGCCTATGATGGTC 59.241 55.000 10.18 0.00 46.33 4.02
6066 6428 1.122019 AGGTCGGCCTATGATGGTCC 61.122 60.000 6.89 0.00 44.90 4.46
6067 6429 1.006102 GTCGGCCTATGATGGTCCG 60.006 63.158 0.00 0.00 43.23 4.79
6068 6430 2.207229 TCGGCCTATGATGGTCCGG 61.207 63.158 0.00 0.00 42.62 5.14
6069 6431 2.207229 CGGCCTATGATGGTCCGGA 61.207 63.158 0.00 0.00 40.49 5.14
6070 6432 1.544825 CGGCCTATGATGGTCCGGAT 61.545 60.000 7.81 0.00 40.49 4.18
6071 6433 0.250513 GGCCTATGATGGTCCGGATC 59.749 60.000 7.81 7.97 0.00 3.36
6072 6434 0.250513 GCCTATGATGGTCCGGATCC 59.749 60.000 13.41 13.86 0.00 3.36
6073 6435 1.644509 CCTATGATGGTCCGGATCCA 58.355 55.000 22.67 22.67 39.41 3.41
6074 6436 1.276421 CCTATGATGGTCCGGATCCAC 59.724 57.143 22.82 17.47 37.81 4.02
6075 6437 1.276421 CTATGATGGTCCGGATCCACC 59.724 57.143 22.82 16.55 37.81 4.61
6076 6438 1.418908 ATGATGGTCCGGATCCACCC 61.419 60.000 22.82 18.21 37.81 4.61
6077 6439 2.042095 ATGGTCCGGATCCACCCA 59.958 61.111 22.82 18.27 37.81 4.51
6078 6440 1.618143 ATGGTCCGGATCCACCCAA 60.618 57.895 22.82 0.32 37.81 4.12
6079 6441 1.211567 ATGGTCCGGATCCACCCAAA 61.212 55.000 22.82 0.00 37.81 3.28
6080 6442 1.381076 GGTCCGGATCCACCCAAAA 59.619 57.895 7.81 0.00 34.64 2.44
6081 6443 0.963856 GGTCCGGATCCACCCAAAAC 60.964 60.000 7.81 0.00 34.64 2.43
6082 6444 0.963856 GTCCGGATCCACCCAAAACC 60.964 60.000 7.81 0.00 34.64 3.27
6083 6445 1.680989 CCGGATCCACCCAAAACCC 60.681 63.158 13.41 0.00 34.64 4.11
6084 6446 1.680989 CGGATCCACCCAAAACCCC 60.681 63.158 13.41 0.00 34.64 4.95
6085 6447 1.467432 GGATCCACCCAAAACCCCA 59.533 57.895 6.95 0.00 0.00 4.96
6086 6448 0.178918 GGATCCACCCAAAACCCCAA 60.179 55.000 6.95 0.00 0.00 4.12
6087 6449 0.973632 GATCCACCCAAAACCCCAAC 59.026 55.000 0.00 0.00 0.00 3.77
6088 6450 0.830023 ATCCACCCAAAACCCCAACG 60.830 55.000 0.00 0.00 0.00 4.10
6089 6451 2.419620 CACCCAAAACCCCAACGC 59.580 61.111 0.00 0.00 0.00 4.84
6090 6452 2.840572 ACCCAAAACCCCAACGCC 60.841 61.111 0.00 0.00 0.00 5.68
6091 6453 3.621805 CCCAAAACCCCAACGCCC 61.622 66.667 0.00 0.00 0.00 6.13
6092 6454 3.984749 CCAAAACCCCAACGCCCG 61.985 66.667 0.00 0.00 0.00 6.13
6093 6455 3.220658 CAAAACCCCAACGCCCGT 61.221 61.111 0.00 0.00 0.00 5.28
6094 6456 3.220658 AAAACCCCAACGCCCGTG 61.221 61.111 0.00 0.00 0.00 4.94
6095 6457 4.509580 AAACCCCAACGCCCGTGT 62.510 61.111 0.00 0.00 0.00 4.49
6096 6458 2.621517 AAAACCCCAACGCCCGTGTA 62.622 55.000 0.00 0.00 0.00 2.90
6097 6459 2.414658 AAACCCCAACGCCCGTGTAT 62.415 55.000 0.00 0.00 0.00 2.29
6098 6460 2.045731 CCCCAACGCCCGTGTATT 60.046 61.111 0.00 0.00 0.00 1.89
6099 6461 1.676303 CCCCAACGCCCGTGTATTT 60.676 57.895 0.00 0.00 0.00 1.40
6100 6462 1.245376 CCCCAACGCCCGTGTATTTT 61.245 55.000 0.00 0.00 0.00 1.82
6101 6463 0.599060 CCCAACGCCCGTGTATTTTT 59.401 50.000 0.00 0.00 0.00 1.94
6102 6464 1.811359 CCCAACGCCCGTGTATTTTTA 59.189 47.619 0.00 0.00 0.00 1.52
6103 6465 2.414426 CCCAACGCCCGTGTATTTTTAC 60.414 50.000 0.00 0.00 0.00 2.01
6104 6466 2.225963 CCAACGCCCGTGTATTTTTACA 59.774 45.455 0.00 0.00 0.00 2.41
6105 6467 3.304525 CCAACGCCCGTGTATTTTTACAA 60.305 43.478 0.00 0.00 0.00 2.41
6106 6468 4.477780 CAACGCCCGTGTATTTTTACAAT 58.522 39.130 0.00 0.00 0.00 2.71
6107 6469 4.345271 ACGCCCGTGTATTTTTACAATC 57.655 40.909 0.00 0.00 0.00 2.67
6108 6470 4.004982 ACGCCCGTGTATTTTTACAATCT 58.995 39.130 0.00 0.00 0.00 2.40
6109 6471 4.142773 ACGCCCGTGTATTTTTACAATCTG 60.143 41.667 0.00 0.00 0.00 2.90
6110 6472 4.102649 GCCCGTGTATTTTTACAATCTGC 58.897 43.478 0.00 0.00 0.00 4.26
6111 6473 4.668289 CCCGTGTATTTTTACAATCTGCC 58.332 43.478 0.00 0.00 0.00 4.85
6112 6474 4.339429 CCGTGTATTTTTACAATCTGCCG 58.661 43.478 0.00 0.00 0.00 5.69
6113 6475 3.783943 CGTGTATTTTTACAATCTGCCGC 59.216 43.478 0.00 0.00 0.00 6.53
6114 6476 4.670478 CGTGTATTTTTACAATCTGCCGCA 60.670 41.667 0.00 0.00 0.00 5.69
6115 6477 5.339990 GTGTATTTTTACAATCTGCCGCAT 58.660 37.500 0.00 0.00 0.00 4.73
6116 6478 5.804979 GTGTATTTTTACAATCTGCCGCATT 59.195 36.000 0.00 0.00 0.00 3.56
6117 6479 5.804473 TGTATTTTTACAATCTGCCGCATTG 59.196 36.000 5.36 5.36 37.29 2.82
6118 6480 2.276472 TTTACAATCTGCCGCATTGC 57.724 45.000 6.62 0.00 35.02 3.56
6119 6481 1.172175 TTACAATCTGCCGCATTGCA 58.828 45.000 9.69 0.00 39.37 4.08
6120 6482 1.172175 TACAATCTGCCGCATTGCAA 58.828 45.000 9.69 0.00 41.51 4.08
6121 6483 0.533491 ACAATCTGCCGCATTGCAAT 59.467 45.000 5.99 5.99 41.51 3.56
6122 6484 1.205657 CAATCTGCCGCATTGCAATC 58.794 50.000 9.53 3.97 41.51 2.67
6123 6485 0.103572 AATCTGCCGCATTGCAATCC 59.896 50.000 9.53 0.00 41.51 3.01
6124 6486 1.741327 ATCTGCCGCATTGCAATCCC 61.741 55.000 9.53 2.68 41.51 3.85
6125 6487 3.435030 CTGCCGCATTGCAATCCCC 62.435 63.158 9.53 0.02 41.51 4.81
6126 6488 3.149648 GCCGCATTGCAATCCCCT 61.150 61.111 9.53 0.00 0.00 4.79
6127 6489 3.122850 CCGCATTGCAATCCCCTC 58.877 61.111 9.53 0.00 0.00 4.30
6128 6490 1.753848 CCGCATTGCAATCCCCTCA 60.754 57.895 9.53 0.00 0.00 3.86
6129 6491 1.731433 CCGCATTGCAATCCCCTCAG 61.731 60.000 9.53 0.00 0.00 3.35
6130 6492 0.749091 CGCATTGCAATCCCCTCAGA 60.749 55.000 9.53 0.00 0.00 3.27
6131 6493 1.700955 GCATTGCAATCCCCTCAGAT 58.299 50.000 9.53 0.00 0.00 2.90
6132 6494 2.811504 CGCATTGCAATCCCCTCAGATA 60.812 50.000 9.53 0.00 0.00 1.98
6133 6495 3.428532 GCATTGCAATCCCCTCAGATAT 58.571 45.455 9.53 0.00 0.00 1.63
6134 6496 3.830755 GCATTGCAATCCCCTCAGATATT 59.169 43.478 9.53 0.00 0.00 1.28
6135 6497 4.321750 GCATTGCAATCCCCTCAGATATTG 60.322 45.833 9.53 0.00 33.45 1.90
6137 6499 2.165998 GCAATCCCCTCAGATATTGCC 58.834 52.381 7.48 0.00 45.31 4.52
6138 6500 2.800250 CAATCCCCTCAGATATTGCCC 58.200 52.381 0.00 0.00 0.00 5.36
6139 6501 2.108776 CAATCCCCTCAGATATTGCCCA 59.891 50.000 0.00 0.00 0.00 5.36
6140 6502 1.438469 TCCCCTCAGATATTGCCCAG 58.562 55.000 0.00 0.00 0.00 4.45
6141 6503 0.403271 CCCCTCAGATATTGCCCAGG 59.597 60.000 0.00 0.00 0.00 4.45
6142 6504 0.251077 CCCTCAGATATTGCCCAGGC 60.251 60.000 0.38 0.38 42.35 4.85
6143 6505 0.251077 CCTCAGATATTGCCCAGGCC 60.251 60.000 6.14 0.00 41.09 5.19
6144 6506 0.769873 CTCAGATATTGCCCAGGCCT 59.230 55.000 0.00 0.00 41.09 5.19
6145 6507 1.144503 CTCAGATATTGCCCAGGCCTT 59.855 52.381 0.00 0.00 41.09 4.35
6146 6508 1.570501 TCAGATATTGCCCAGGCCTTT 59.429 47.619 0.00 0.00 41.09 3.11
6147 6509 1.684983 CAGATATTGCCCAGGCCTTTG 59.315 52.381 0.00 0.00 41.09 2.77
6148 6510 0.390492 GATATTGCCCAGGCCTTTGC 59.610 55.000 15.03 15.03 41.09 3.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.379316 GGTTTCGTGCTGTCGGTTTT 59.621 50.000 0.00 0.00 0.00 2.43
1 2 1.441732 GGGTTTCGTGCTGTCGGTTT 61.442 55.000 0.00 0.00 0.00 3.27
2 3 1.890510 GGGTTTCGTGCTGTCGGTT 60.891 57.895 0.00 0.00 0.00 4.44
3 4 2.280592 GGGTTTCGTGCTGTCGGT 60.281 61.111 0.00 0.00 0.00 4.69
4 5 3.411351 CGGGTTTCGTGCTGTCGG 61.411 66.667 0.00 0.00 0.00 4.79
13 14 2.558554 ATCTCGCCTGACGGGTTTCG 62.559 60.000 1.33 0.00 44.96 3.46
14 15 1.084370 CATCTCGCCTGACGGGTTTC 61.084 60.000 1.33 0.00 44.96 2.78
15 16 1.079127 CATCTCGCCTGACGGGTTT 60.079 57.895 1.33 0.00 44.96 3.27
16 17 2.579201 CATCTCGCCTGACGGGTT 59.421 61.111 1.33 0.00 44.96 4.11
17 18 4.148825 GCATCTCGCCTGACGGGT 62.149 66.667 1.33 0.00 44.96 5.28
18 19 3.376935 AAGCATCTCGCCTGACGGG 62.377 63.158 0.00 0.00 46.59 5.28
19 20 2.169789 CAAGCATCTCGCCTGACGG 61.170 63.158 0.00 0.00 44.04 4.79
107 108 1.671379 GGTCCAGAAACGCTCCACC 60.671 63.158 0.00 0.00 0.00 4.61
144 145 1.762460 GGATGCCCGAGGGAGAAGA 60.762 63.158 13.28 0.00 37.50 2.87
156 157 1.247567 CCGTGGGAATATTGGATGCC 58.752 55.000 0.00 0.00 0.00 4.40
199 200 4.290023 GGCCCACCGGACTATAGT 57.710 61.111 9.46 4.68 32.34 2.12
224 231 3.541711 GAGTGAAACGTGCACACATAAC 58.458 45.455 18.64 9.11 45.86 1.89
277 286 3.134623 TCACCCAGCACTCCTAATACATG 59.865 47.826 0.00 0.00 0.00 3.21
283 292 0.685097 GTGTCACCCAGCACTCCTAA 59.315 55.000 0.00 0.00 33.22 2.69
291 300 0.533032 GAGTAGGAGTGTCACCCAGC 59.467 60.000 11.62 5.29 0.00 4.85
299 308 2.016905 AGGTTGCTGAGTAGGAGTGT 57.983 50.000 0.00 0.00 0.00 3.55
300 309 2.826128 TGTAGGTTGCTGAGTAGGAGTG 59.174 50.000 0.00 0.00 0.00 3.51
312 321 2.231215 AGATGCTCGATGTAGGTTGC 57.769 50.000 0.00 0.00 0.00 4.17
328 337 8.309656 CCAAGCATTTTAAAGAAGGAAGAAGAT 58.690 33.333 0.00 0.00 0.00 2.40
357 366 5.746990 AGAAGAATTGTAGGTACACTGCT 57.253 39.130 0.00 0.00 35.64 4.24
358 367 5.062308 CGAAGAAGAATTGTAGGTACACTGC 59.938 44.000 0.00 0.00 35.64 4.40
359 368 6.157211 ACGAAGAAGAATTGTAGGTACACTG 58.843 40.000 0.00 0.00 35.64 3.66
360 369 6.342338 ACGAAGAAGAATTGTAGGTACACT 57.658 37.500 0.00 0.00 35.64 3.55
361 370 6.643770 TGAACGAAGAAGAATTGTAGGTACAC 59.356 38.462 0.00 0.00 35.64 2.90
362 371 6.751157 TGAACGAAGAAGAATTGTAGGTACA 58.249 36.000 0.00 0.00 0.00 2.90
382 394 8.483307 AACCATGCATATCTCAAATTTTGAAC 57.517 30.769 12.62 0.74 39.58 3.18
408 420 7.498900 TGGCCTGACTTGAATACATACATAAAG 59.501 37.037 3.32 0.00 0.00 1.85
411 423 6.493189 TGGCCTGACTTGAATACATACATA 57.507 37.500 3.32 0.00 0.00 2.29
412 424 5.371526 CTGGCCTGACTTGAATACATACAT 58.628 41.667 3.32 0.00 0.00 2.29
414 426 3.561725 GCTGGCCTGACTTGAATACATAC 59.438 47.826 14.77 0.00 0.00 2.39
473 485 2.278726 ACGAAAACGACGCCACGA 60.279 55.556 10.23 0.00 37.03 4.35
553 565 9.106070 CCCTCAGTAAACTAATATAAAAGCGTT 57.894 33.333 0.00 0.00 0.00 4.84
554 566 8.480501 TCCCTCAGTAAACTAATATAAAAGCGT 58.519 33.333 0.00 0.00 0.00 5.07
555 567 8.882415 TCCCTCAGTAAACTAATATAAAAGCG 57.118 34.615 0.00 0.00 0.00 4.68
556 568 9.833917 ACTCCCTCAGTAAACTAATATAAAAGC 57.166 33.333 0.00 0.00 31.37 3.51
620 632 0.170116 TTGCATTTGTTCGGCGATCC 59.830 50.000 11.76 5.15 0.00 3.36
653 671 9.706691 AATATGTTCGTTTTCTTGTCTAGAGAA 57.293 29.630 1.91 1.91 33.51 2.87
667 686 7.860872 GTGTTTTCTCTTGGAATATGTTCGTTT 59.139 33.333 0.00 0.00 35.10 3.60
703 723 2.047844 TGGCTGTCTCTTCGCTGC 60.048 61.111 0.00 0.00 0.00 5.25
800 837 4.507916 AGAGAGAGGCGGCCGCTA 62.508 66.667 45.23 0.00 41.60 4.26
815 852 0.527113 AGACGAGACGAGACGAGAGA 59.473 55.000 0.00 0.00 0.00 3.10
821 858 0.641783 GACGAGAGACGAGACGAGAC 59.358 60.000 0.00 0.00 45.77 3.36
929 975 3.656045 CGGTGCGTTGGTTGGGTC 61.656 66.667 0.00 0.00 0.00 4.46
943 989 2.281276 GGGGTTTCTCAACGCGGT 60.281 61.111 12.47 0.00 44.88 5.68
1017 1073 2.743928 CCAACGAGCTGCCAGACC 60.744 66.667 0.00 0.00 0.00 3.85
1271 1327 3.665190 AGGACGGAGAAGTAAGCAAAAG 58.335 45.455 0.00 0.00 0.00 2.27
1272 1328 3.764237 AGGACGGAGAAGTAAGCAAAA 57.236 42.857 0.00 0.00 0.00 2.44
1273 1329 3.399330 CAAGGACGGAGAAGTAAGCAAA 58.601 45.455 0.00 0.00 0.00 3.68
1293 1349 1.295423 GCCTAACCAGAGGAACGCA 59.705 57.895 0.00 0.00 39.15 5.24
1301 1357 0.978146 GAGCTCCCTGCCTAACCAGA 60.978 60.000 0.87 0.00 44.23 3.86
1342 1398 3.277142 AGGAACGAGAACCACAAGTTT 57.723 42.857 0.00 0.00 39.40 2.66
1343 1399 2.943033 CAAGGAACGAGAACCACAAGTT 59.057 45.455 0.00 0.00 43.07 2.66
1344 1400 2.561569 CAAGGAACGAGAACCACAAGT 58.438 47.619 0.00 0.00 0.00 3.16
1388 1444 4.560128 TCAATCTCGTGTTCTCCTTTGAG 58.440 43.478 0.00 0.00 40.17 3.02
1453 1512 4.451629 TGTCTACTTGATCCTTCGGAAC 57.548 45.455 0.00 0.00 34.34 3.62
1481 1542 4.094442 ACTGAAACGAGAGGTGTTTTGTTC 59.906 41.667 0.00 0.00 39.51 3.18
1498 1562 2.951642 CAGTTGCCTTCCTGAACTGAAA 59.048 45.455 0.00 0.00 46.31 2.69
1532 1598 0.389757 GGTGGCTAGGAATCGAGGAC 59.610 60.000 0.00 0.00 0.00 3.85
1535 1601 2.990066 AAAGGTGGCTAGGAATCGAG 57.010 50.000 0.00 0.00 0.00 4.04
1585 1651 0.249489 GCGTGCACCTACCCTAGATG 60.249 60.000 12.15 0.00 0.00 2.90
1590 1656 0.676782 GAATTGCGTGCACCTACCCT 60.677 55.000 12.15 0.00 0.00 4.34
1595 1661 0.241749 CACATGAATTGCGTGCACCT 59.758 50.000 12.15 0.00 36.99 4.00
1694 1760 3.027974 ACAGACTTCGCTTTCACCTAC 57.972 47.619 0.00 0.00 0.00 3.18
1716 1782 2.658373 ACGTCCCCAAACACAAAAAC 57.342 45.000 0.00 0.00 0.00 2.43
1720 1786 3.495434 ATTCTACGTCCCCAAACACAA 57.505 42.857 0.00 0.00 0.00 3.33
1725 1791 4.435425 CATACGAATTCTACGTCCCCAAA 58.565 43.478 3.52 0.00 43.62 3.28
1805 1874 2.497675 GCTTTTTGGAAGAGATTCCCCC 59.502 50.000 4.64 0.00 40.39 5.40
1806 1875 2.497675 GGCTTTTTGGAAGAGATTCCCC 59.502 50.000 4.64 0.00 40.39 4.81
1807 1876 2.164422 CGGCTTTTTGGAAGAGATTCCC 59.836 50.000 4.64 0.00 40.39 3.97
1808 1877 2.416027 GCGGCTTTTTGGAAGAGATTCC 60.416 50.000 0.00 0.00 41.48 3.01
1809 1878 2.729156 CGCGGCTTTTTGGAAGAGATTC 60.729 50.000 0.00 0.00 0.00 2.52
1829 1898 3.822167 ACAGGGTGGTAAATTTTGTACCG 59.178 43.478 0.00 0.00 43.48 4.02
1852 1921 5.042593 GCAATAATTGATTCATGCGTGGAA 58.957 37.500 5.98 0.00 0.00 3.53
1862 1931 6.633856 ACCACCAGAAAGCAATAATTGATTC 58.366 36.000 0.00 0.00 38.50 2.52
1871 1940 2.173519 CCATGACCACCAGAAAGCAAT 58.826 47.619 0.00 0.00 0.00 3.56
1872 1941 1.619654 CCATGACCACCAGAAAGCAA 58.380 50.000 0.00 0.00 0.00 3.91
1886 1955 0.673333 AATCGTGAAGCGTGCCATGA 60.673 50.000 0.00 0.00 42.13 3.07
1893 1962 3.118454 CGCCCAATCGTGAAGCGT 61.118 61.111 0.00 0.00 40.40 5.07
1894 1963 3.864686 CCGCCCAATCGTGAAGCG 61.865 66.667 0.00 0.00 43.10 4.68
1895 1964 2.435938 TCCGCCCAATCGTGAAGC 60.436 61.111 0.00 0.00 0.00 3.86
1896 1965 1.361668 CTGTCCGCCCAATCGTGAAG 61.362 60.000 0.00 0.00 0.00 3.02
1897 1966 1.375396 CTGTCCGCCCAATCGTGAA 60.375 57.895 0.00 0.00 0.00 3.18
1898 1967 1.822114 TTCTGTCCGCCCAATCGTGA 61.822 55.000 0.00 0.00 0.00 4.35
1899 1968 0.953471 TTTCTGTCCGCCCAATCGTG 60.953 55.000 0.00 0.00 0.00 4.35
1903 1972 1.614317 CCTCTTTTCTGTCCGCCCAAT 60.614 52.381 0.00 0.00 0.00 3.16
1908 1977 1.377333 CCCCCTCTTTTCTGTCCGC 60.377 63.158 0.00 0.00 0.00 5.54
1909 1978 0.690762 TTCCCCCTCTTTTCTGTCCG 59.309 55.000 0.00 0.00 0.00 4.79
1926 1998 7.606456 TGTGTATTATTCTCCCACAGTTCTTTC 59.394 37.037 0.00 0.00 32.64 2.62
1934 2006 6.367374 TCTTGTGTGTATTATTCTCCCACA 57.633 37.500 0.00 0.00 33.92 4.17
2039 2174 8.454894 GTTCTCCTTAATTTAGCCAGAAAGAAG 58.545 37.037 5.95 0.00 0.00 2.85
2150 2301 1.211703 TCTGTTGGAGCAGGTTGAACA 59.788 47.619 0.00 0.00 37.12 3.18
2210 2361 3.314693 AGTGGGTCCTCAAAGTAGTTGA 58.685 45.455 0.00 0.00 44.20 3.18
2283 2434 8.009974 AGTTCAATAACTCGTTCAAGATTTTCG 58.990 33.333 0.00 0.00 42.42 3.46
2321 2472 7.148289 TGTGTGGAGTTATTACGAACAAAACAA 60.148 33.333 0.00 0.00 0.00 2.83
2322 2473 6.315642 TGTGTGGAGTTATTACGAACAAAACA 59.684 34.615 0.00 0.00 0.00 2.83
2461 2659 5.046159 TGAAACTAGGGTCATCACGGTAATT 60.046 40.000 0.00 0.00 0.00 1.40
2574 2772 9.807649 AACAAATAAAGCAGGATATAAGCAAAG 57.192 29.630 0.00 0.00 0.00 2.77
2984 3195 4.219507 ACATCTCATATGGACGATGAGGTC 59.780 45.833 24.40 0.00 46.91 3.85
3043 3257 5.968528 ATCACGTAGAAGGATACCAGATC 57.031 43.478 0.00 0.00 37.17 2.75
3154 3368 6.705825 AGCAAATACACCAAAATTCAAGAACC 59.294 34.615 0.00 0.00 0.00 3.62
3193 3407 9.429600 CCCGTTTAAAATGTATACGATCTTTTC 57.570 33.333 0.00 0.00 34.36 2.29
3198 3412 8.006027 GCTAACCCGTTTAAAATGTATACGATC 58.994 37.037 0.00 0.00 34.36 3.69
3202 3417 8.667463 TGAAGCTAACCCGTTTAAAATGTATAC 58.333 33.333 0.00 0.00 0.00 1.47
3239 3454 0.179045 AGTCCAGGTGTGTGAACAGC 60.179 55.000 0.00 0.00 38.30 4.40
3245 3460 2.355756 CAGTTGAAAGTCCAGGTGTGTG 59.644 50.000 0.00 0.00 0.00 3.82
3284 3499 7.145932 AGTTGGACACTGTAAATCAAATAGC 57.854 36.000 0.00 0.00 32.83 2.97
3438 3653 2.034179 GCAAAGGGCACGTCTTAAGTTT 59.966 45.455 1.63 0.00 43.97 2.66
3532 3748 4.984161 CACCTCAACCTAAGCACAAAATTG 59.016 41.667 0.00 0.00 0.00 2.32
3580 3796 5.047566 TGAGGAAGTTCACAATTCTCCAA 57.952 39.130 5.01 0.00 0.00 3.53
3733 3949 4.906618 ACCACGGTCTTGAGATAATTTGT 58.093 39.130 0.00 0.00 0.00 2.83
3778 3994 9.277783 GGACAAGATCAACTGCAATAGTAATAT 57.722 33.333 0.00 0.00 39.18 1.28
4125 4342 3.498777 TCCGCAGAGTATAGAATGACTCG 59.501 47.826 0.00 0.00 45.57 4.18
4211 4437 8.665685 CGGCTGAATAAGTTAAAGAATAGTGTT 58.334 33.333 0.00 0.00 0.00 3.32
4213 4439 7.280205 ACCGGCTGAATAAGTTAAAGAATAGTG 59.720 37.037 0.00 0.00 0.00 2.74
4214 4440 7.336396 ACCGGCTGAATAAGTTAAAGAATAGT 58.664 34.615 0.00 0.00 0.00 2.12
4215 4441 7.787725 ACCGGCTGAATAAGTTAAAGAATAG 57.212 36.000 0.00 0.00 0.00 1.73
4216 4442 7.414762 GCAACCGGCTGAATAAGTTAAAGAATA 60.415 37.037 9.57 0.00 40.25 1.75
4387 4614 0.393077 ATGGCCGAGGATTAAGACCG 59.607 55.000 0.00 0.00 0.00 4.79
4598 4826 5.103771 AGCCAGTTCCATTCCTTCTAATCAT 60.104 40.000 0.00 0.00 0.00 2.45
4619 4847 5.126396 AGCACAAAAGATAGAAAACAGCC 57.874 39.130 0.00 0.00 0.00 4.85
4682 4910 9.640974 CATGAATTTTGACAAAACAGAAATGAC 57.359 29.630 15.36 0.00 32.37 3.06
4826 5054 5.045869 AGGTACTAACATACATGGCTGTGTT 60.046 40.000 0.00 5.21 36.02 3.32
4901 5129 9.614269 AGCATATTTTACATATTACCCCCAAAT 57.386 29.630 0.00 0.00 0.00 2.32
4974 5223 6.914757 GTGCAGCTTTATCAAACAATAGATCC 59.085 38.462 0.00 0.00 0.00 3.36
5012 5261 6.879458 ACAGTGTTTATTAGCAAAGGTAGGAG 59.121 38.462 0.00 0.00 0.00 3.69
5035 5284 1.383456 GCACCCTGCAGTTGTGAACA 61.383 55.000 28.19 0.00 44.26 3.18
5145 5394 1.656095 GTCATTCAGAACTCCGCTTCG 59.344 52.381 0.00 0.00 0.00 3.79
5161 5410 2.169352 AGATTAGCTGCACCTTCGTCAT 59.831 45.455 1.02 0.00 0.00 3.06
5162 5411 1.550524 AGATTAGCTGCACCTTCGTCA 59.449 47.619 1.02 0.00 0.00 4.35
5163 5412 2.159170 AGAGATTAGCTGCACCTTCGTC 60.159 50.000 1.02 0.00 0.00 4.20
5186 5435 2.890311 AGGGAAAAATGTCATCGTGCAA 59.110 40.909 0.00 0.00 0.00 4.08
5187 5436 2.228582 CAGGGAAAAATGTCATCGTGCA 59.771 45.455 0.00 0.00 0.00 4.57
5206 5455 2.071540 TGTAGACGACTACCGACACAG 58.928 52.381 19.80 0.00 45.81 3.66
5212 5461 3.484886 GCTAACACTGTAGACGACTACCG 60.485 52.174 19.80 16.39 45.81 4.02
5221 5470 1.542915 GTGACCGGCTAACACTGTAGA 59.457 52.381 0.00 0.00 0.00 2.59
5223 5472 1.624336 AGTGACCGGCTAACACTGTA 58.376 50.000 18.52 0.00 42.18 2.74
5224 5473 2.437625 AGTGACCGGCTAACACTGT 58.562 52.632 18.52 1.96 42.18 3.55
5239 5489 1.001048 CCAACACAGCACATTCCAGTG 60.001 52.381 0.00 0.00 42.37 3.66
5240 5490 1.321474 CCAACACAGCACATTCCAGT 58.679 50.000 0.00 0.00 0.00 4.00
5241 5491 1.321474 ACCAACACAGCACATTCCAG 58.679 50.000 0.00 0.00 0.00 3.86
5244 5494 3.187227 CAGACTACCAACACAGCACATTC 59.813 47.826 0.00 0.00 0.00 2.67
5265 5516 1.548719 ACACGTTCCTCGATCCATTCA 59.451 47.619 0.00 0.00 42.86 2.57
5298 5549 1.915141 AAAACAGGATCAGCACCCAG 58.085 50.000 0.00 0.00 0.00 4.45
5400 5651 2.735134 AGTGCGACAAGTAATTCGGAAC 59.265 45.455 0.00 0.00 37.32 3.62
5401 5652 3.034721 AGTGCGACAAGTAATTCGGAA 57.965 42.857 0.00 0.00 37.32 4.30
5402 5653 2.736144 AGTGCGACAAGTAATTCGGA 57.264 45.000 0.00 0.00 35.73 4.55
5403 5654 4.260212 CCATAAGTGCGACAAGTAATTCGG 60.260 45.833 0.00 0.00 35.73 4.30
5404 5655 4.565166 TCCATAAGTGCGACAAGTAATTCG 59.435 41.667 0.00 0.00 38.31 3.34
5405 5656 6.037172 ACATCCATAAGTGCGACAAGTAATTC 59.963 38.462 0.00 0.00 0.00 2.17
5406 5657 5.880332 ACATCCATAAGTGCGACAAGTAATT 59.120 36.000 0.00 0.00 0.00 1.40
5407 5658 5.428253 ACATCCATAAGTGCGACAAGTAAT 58.572 37.500 0.00 0.00 0.00 1.89
5408 5659 4.827692 ACATCCATAAGTGCGACAAGTAA 58.172 39.130 0.00 0.00 0.00 2.24
5409 5660 4.465632 ACATCCATAAGTGCGACAAGTA 57.534 40.909 0.00 0.00 0.00 2.24
5410 5661 3.334583 ACATCCATAAGTGCGACAAGT 57.665 42.857 0.00 0.00 0.00 3.16
5411 5662 5.049828 TGATACATCCATAAGTGCGACAAG 58.950 41.667 0.00 0.00 0.00 3.16
5412 5663 5.017294 TGATACATCCATAAGTGCGACAA 57.983 39.130 0.00 0.00 0.00 3.18
5413 5664 4.664150 TGATACATCCATAAGTGCGACA 57.336 40.909 0.00 0.00 0.00 4.35
5414 5665 5.289595 TCTTGATACATCCATAAGTGCGAC 58.710 41.667 0.00 0.00 0.00 5.19
5415 5666 5.529581 TCTTGATACATCCATAAGTGCGA 57.470 39.130 0.00 0.00 0.00 5.10
5416 5667 5.698089 ACATCTTGATACATCCATAAGTGCG 59.302 40.000 0.00 0.00 0.00 5.34
5417 5668 8.783833 ATACATCTTGATACATCCATAAGTGC 57.216 34.615 0.00 0.00 0.00 4.40
5446 5697 9.530633 GTCGTTAAAATGGATGTATCTAGAACT 57.469 33.333 0.00 0.00 0.00 3.01
5447 5698 8.477709 CGTCGTTAAAATGGATGTATCTAGAAC 58.522 37.037 0.00 0.00 0.00 3.01
5448 5699 8.407832 TCGTCGTTAAAATGGATGTATCTAGAA 58.592 33.333 0.00 0.00 0.00 2.10
5449 5700 7.933396 TCGTCGTTAAAATGGATGTATCTAGA 58.067 34.615 0.00 0.00 0.00 2.43
5450 5701 7.861372 ACTCGTCGTTAAAATGGATGTATCTAG 59.139 37.037 0.00 0.00 0.00 2.43
5451 5702 7.709947 ACTCGTCGTTAAAATGGATGTATCTA 58.290 34.615 0.00 0.00 0.00 1.98
5452 5703 6.570692 ACTCGTCGTTAAAATGGATGTATCT 58.429 36.000 0.00 0.00 0.00 1.98
5453 5704 6.823678 ACTCGTCGTTAAAATGGATGTATC 57.176 37.500 0.00 0.00 0.00 2.24
5454 5705 8.882415 ATTACTCGTCGTTAAAATGGATGTAT 57.118 30.769 0.00 0.00 0.00 2.29
5455 5706 8.706492 AATTACTCGTCGTTAAAATGGATGTA 57.294 30.769 0.00 0.00 0.00 2.29
5456 5707 7.605410 AATTACTCGTCGTTAAAATGGATGT 57.395 32.000 0.00 0.00 0.00 3.06
5457 5708 7.428183 CCAAATTACTCGTCGTTAAAATGGATG 59.572 37.037 12.90 0.00 0.00 3.51
5458 5709 7.334921 TCCAAATTACTCGTCGTTAAAATGGAT 59.665 33.333 14.89 0.00 0.00 3.41
5459 5710 6.649973 TCCAAATTACTCGTCGTTAAAATGGA 59.350 34.615 14.89 14.89 0.00 3.41
5460 5711 6.833839 TCCAAATTACTCGTCGTTAAAATGG 58.166 36.000 12.43 12.43 0.00 3.16
5461 5712 7.005857 CGTTCCAAATTACTCGTCGTTAAAATG 59.994 37.037 0.00 0.00 0.00 2.32
5462 5713 7.011189 CGTTCCAAATTACTCGTCGTTAAAAT 58.989 34.615 0.00 0.00 0.00 1.82
5463 5714 6.354080 CGTTCCAAATTACTCGTCGTTAAAA 58.646 36.000 0.00 0.00 0.00 1.52
5464 5715 5.107530 CCGTTCCAAATTACTCGTCGTTAAA 60.108 40.000 0.00 0.00 0.00 1.52
5465 5716 4.385447 CCGTTCCAAATTACTCGTCGTTAA 59.615 41.667 0.00 0.00 0.00 2.01
5466 5717 3.919804 CCGTTCCAAATTACTCGTCGTTA 59.080 43.478 0.00 0.00 0.00 3.18
5467 5718 2.733026 CCGTTCCAAATTACTCGTCGTT 59.267 45.455 0.00 0.00 0.00 3.85
5468 5719 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
5469 5720 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
5470 5721 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
5471 5722 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
5472 5723 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
5473 5724 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
5474 5725 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
5475 5726 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
5476 5727 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
5477 5728 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
5478 5729 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
5479 5730 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
5480 5731 2.905415 TAGTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
5481 5732 2.905415 TTAGTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
5482 5733 3.294214 TCATTAGTACTCCCTCCGTTCC 58.706 50.000 0.00 0.00 0.00 3.62
5483 5734 4.401837 AGTTCATTAGTACTCCCTCCGTTC 59.598 45.833 0.00 0.00 0.00 3.95
5484 5735 4.159879 CAGTTCATTAGTACTCCCTCCGTT 59.840 45.833 0.00 0.00 0.00 4.44
5485 5736 3.700038 CAGTTCATTAGTACTCCCTCCGT 59.300 47.826 0.00 0.00 0.00 4.69
5486 5737 3.491104 GCAGTTCATTAGTACTCCCTCCG 60.491 52.174 0.00 0.00 0.00 4.63
5487 5738 3.491104 CGCAGTTCATTAGTACTCCCTCC 60.491 52.174 0.00 0.00 0.00 4.30
5488 5739 3.707793 CGCAGTTCATTAGTACTCCCTC 58.292 50.000 0.00 0.00 0.00 4.30
5489 5740 2.159085 GCGCAGTTCATTAGTACTCCCT 60.159 50.000 0.30 0.00 0.00 4.20
5490 5741 2.202566 GCGCAGTTCATTAGTACTCCC 58.797 52.381 0.30 0.00 0.00 4.30
5491 5742 2.159085 AGGCGCAGTTCATTAGTACTCC 60.159 50.000 10.83 0.00 0.00 3.85
5492 5743 2.860735 CAGGCGCAGTTCATTAGTACTC 59.139 50.000 10.83 0.00 0.00 2.59
5493 5744 2.893637 CAGGCGCAGTTCATTAGTACT 58.106 47.619 10.83 0.00 0.00 2.73
5494 5745 1.327764 GCAGGCGCAGTTCATTAGTAC 59.672 52.381 10.83 0.00 38.36 2.73
5529 5780 0.763035 ACAAGGAACACCGCCTAGTT 59.237 50.000 0.00 0.00 33.76 2.24
5569 5821 4.274705 TGATTTGAAACGTACACAGCACAT 59.725 37.500 0.00 0.00 0.00 3.21
5570 5822 3.623510 TGATTTGAAACGTACACAGCACA 59.376 39.130 0.00 0.00 0.00 4.57
5571 5823 4.025229 TCTGATTTGAAACGTACACAGCAC 60.025 41.667 0.00 0.00 0.00 4.40
5572 5824 4.025229 GTCTGATTTGAAACGTACACAGCA 60.025 41.667 0.00 0.00 0.00 4.41
5573 5825 4.455124 GTCTGATTTGAAACGTACACAGC 58.545 43.478 0.00 0.00 0.00 4.40
5574 5826 4.509970 TGGTCTGATTTGAAACGTACACAG 59.490 41.667 0.00 0.00 0.00 3.66
5580 5832 3.541632 ACAGTGGTCTGATTTGAAACGT 58.458 40.909 2.17 0.00 43.76 3.99
5609 5861 7.118723 TGGTCCATAACAGAATTCAGCTTAAT 58.881 34.615 8.44 0.00 0.00 1.40
5613 5865 4.574674 TGGTCCATAACAGAATTCAGCT 57.425 40.909 8.44 0.00 0.00 4.24
5620 5872 5.073554 AGGCATATCATGGTCCATAACAGAA 59.926 40.000 3.38 0.00 0.00 3.02
5711 5963 7.696992 TTGGACTCTTTTCTAACAAACTTGT 57.303 32.000 0.00 0.00 44.72 3.16
5714 5966 7.775561 ACTGATTGGACTCTTTTCTAACAAACT 59.224 33.333 0.00 0.00 0.00 2.66
5717 5969 8.519799 AAACTGATTGGACTCTTTTCTAACAA 57.480 30.769 0.00 0.00 0.00 2.83
5719 5971 9.490379 TCTAAACTGATTGGACTCTTTTCTAAC 57.510 33.333 0.00 0.00 0.00 2.34
5736 5988 9.357161 GGAACTCTAATAGGATCTCTAAACTGA 57.643 37.037 0.00 0.00 0.00 3.41
5761 6013 7.489113 GGCATGACAAGTCAATAAGTTTATTGG 59.511 37.037 19.22 9.54 46.22 3.16
5769 6021 5.413833 AGACAAGGCATGACAAGTCAATAAG 59.586 40.000 21.09 0.00 43.58 1.73
5770 6022 5.316167 AGACAAGGCATGACAAGTCAATAA 58.684 37.500 21.09 0.00 43.58 1.40
5773 6025 3.213206 AGACAAGGCATGACAAGTCAA 57.787 42.857 21.09 0.00 43.58 3.18
5794 6146 6.689561 TGAGGGGTCAGGTCTTTTATATAGA 58.310 40.000 0.00 0.00 0.00 1.98
5804 6156 1.518367 TTTGTTGAGGGGTCAGGTCT 58.482 50.000 0.00 0.00 0.00 3.85
5806 6158 4.407365 CTTTATTTGTTGAGGGGTCAGGT 58.593 43.478 0.00 0.00 0.00 4.00
5845 6197 4.545823 TTGAGTAAGACAAAGGCAAACG 57.454 40.909 0.00 0.00 0.00 3.60
5860 6212 9.803315 CTGCTACTCACATAAACTAATTGAGTA 57.197 33.333 8.93 8.93 43.97 2.59
5861 6213 8.531982 TCTGCTACTCACATAAACTAATTGAGT 58.468 33.333 7.62 7.62 46.65 3.41
5862 6214 8.932945 TCTGCTACTCACATAAACTAATTGAG 57.067 34.615 0.00 0.00 39.72 3.02
5867 6219 9.890629 AAATGATCTGCTACTCACATAAACTAA 57.109 29.630 0.00 0.00 0.00 2.24
5868 6220 9.534565 GAAATGATCTGCTACTCACATAAACTA 57.465 33.333 0.00 0.00 0.00 2.24
5869 6221 8.043113 TGAAATGATCTGCTACTCACATAAACT 58.957 33.333 0.00 0.00 0.00 2.66
5870 6222 8.201554 TGAAATGATCTGCTACTCACATAAAC 57.798 34.615 0.00 0.00 0.00 2.01
5907 6267 3.186909 CGCTTCACATTTCATCGGAGTA 58.813 45.455 0.00 0.00 0.00 2.59
5911 6273 0.447406 TGCGCTTCACATTTCATCGG 59.553 50.000 9.73 0.00 0.00 4.18
5912 6274 1.527696 GTGCGCTTCACATTTCATCG 58.472 50.000 9.73 0.00 44.98 3.84
5928 6290 2.043652 ATGCCCTGTGGATGGTGC 60.044 61.111 0.00 0.00 0.00 5.01
5929 6291 0.465097 GAGATGCCCTGTGGATGGTG 60.465 60.000 0.00 0.00 0.00 4.17
5930 6292 1.918253 GAGATGCCCTGTGGATGGT 59.082 57.895 0.00 0.00 0.00 3.55
5931 6293 1.227764 CGAGATGCCCTGTGGATGG 60.228 63.158 0.00 0.00 0.00 3.51
5932 6294 1.227764 CCGAGATGCCCTGTGGATG 60.228 63.158 0.00 0.00 0.00 3.51
5933 6295 1.383109 TCCGAGATGCCCTGTGGAT 60.383 57.895 0.00 0.00 0.00 3.41
5934 6296 2.038813 TCCGAGATGCCCTGTGGA 59.961 61.111 0.00 0.00 0.00 4.02
5935 6297 2.187946 GTCCGAGATGCCCTGTGG 59.812 66.667 0.00 0.00 0.00 4.17
5936 6298 2.187946 GGTCCGAGATGCCCTGTG 59.812 66.667 0.00 0.00 0.00 3.66
5937 6299 2.284625 TGGTCCGAGATGCCCTGT 60.285 61.111 0.00 0.00 0.00 4.00
5938 6300 1.406065 ATCTGGTCCGAGATGCCCTG 61.406 60.000 3.76 0.00 31.14 4.45
5939 6301 1.074926 ATCTGGTCCGAGATGCCCT 60.075 57.895 3.76 0.00 31.14 5.19
5940 6302 1.070445 CATCTGGTCCGAGATGCCC 59.930 63.158 14.52 0.00 42.18 5.36
5941 6303 4.766970 CATCTGGTCCGAGATGCC 57.233 61.111 14.52 0.00 42.18 4.40
5950 6312 7.067129 GGTCTAAAAATTTAGGGACATCTGGTC 59.933 40.741 11.83 0.00 40.94 4.02
5951 6313 6.890268 GGTCTAAAAATTTAGGGACATCTGGT 59.110 38.462 11.83 0.00 40.35 4.00
5952 6314 7.119387 AGGTCTAAAAATTTAGGGACATCTGG 58.881 38.462 11.83 0.00 40.35 3.86
5953 6315 8.581253 AAGGTCTAAAAATTTAGGGACATCTG 57.419 34.615 11.83 0.00 40.35 2.90
5954 6316 8.390921 TGAAGGTCTAAAAATTTAGGGACATCT 58.609 33.333 11.83 0.00 40.35 2.90
5955 6317 8.575649 TGAAGGTCTAAAAATTTAGGGACATC 57.424 34.615 11.83 12.77 40.35 3.06
5956 6318 8.950007 TTGAAGGTCTAAAAATTTAGGGACAT 57.050 30.769 11.83 8.33 40.35 3.06
5957 6319 8.770010 TTTGAAGGTCTAAAAATTTAGGGACA 57.230 30.769 11.83 4.88 40.35 4.02
5958 6320 7.813148 GCTTTGAAGGTCTAAAAATTTAGGGAC 59.187 37.037 11.83 5.32 40.35 4.46
5959 6321 7.308951 CGCTTTGAAGGTCTAAAAATTTAGGGA 60.309 37.037 11.83 0.00 40.35 4.20
5960 6322 6.806739 CGCTTTGAAGGTCTAAAAATTTAGGG 59.193 38.462 11.83 0.00 40.35 3.53
5961 6323 6.806739 CCGCTTTGAAGGTCTAAAAATTTAGG 59.193 38.462 11.83 0.00 40.35 2.69
5962 6324 6.308041 GCCGCTTTGAAGGTCTAAAAATTTAG 59.692 38.462 6.59 6.59 41.10 1.85
5963 6325 6.015772 AGCCGCTTTGAAGGTCTAAAAATTTA 60.016 34.615 0.00 0.00 0.00 1.40
5964 6326 4.988540 GCCGCTTTGAAGGTCTAAAAATTT 59.011 37.500 0.00 0.00 0.00 1.82
5965 6327 4.280929 AGCCGCTTTGAAGGTCTAAAAATT 59.719 37.500 0.00 0.00 0.00 1.82
5966 6328 3.826729 AGCCGCTTTGAAGGTCTAAAAAT 59.173 39.130 0.00 0.00 0.00 1.82
5967 6329 3.004315 CAGCCGCTTTGAAGGTCTAAAAA 59.996 43.478 0.00 0.00 0.00 1.94
5968 6330 2.552315 CAGCCGCTTTGAAGGTCTAAAA 59.448 45.455 0.00 0.00 0.00 1.52
5969 6331 2.151202 CAGCCGCTTTGAAGGTCTAAA 58.849 47.619 0.00 0.00 0.00 1.85
5970 6332 1.808411 CAGCCGCTTTGAAGGTCTAA 58.192 50.000 0.00 0.00 0.00 2.10
5971 6333 0.673644 GCAGCCGCTTTGAAGGTCTA 60.674 55.000 0.00 0.00 34.30 2.59
5972 6334 1.968540 GCAGCCGCTTTGAAGGTCT 60.969 57.895 0.00 0.00 34.30 3.85
5973 6335 2.563427 GCAGCCGCTTTGAAGGTC 59.437 61.111 0.00 0.00 34.30 3.85
5974 6336 2.985847 GGCAGCCGCTTTGAAGGT 60.986 61.111 0.00 0.00 38.60 3.50
5975 6337 3.752339 GGGCAGCCGCTTTGAAGG 61.752 66.667 5.00 0.00 38.60 3.46
5976 6338 1.880819 AATGGGCAGCCGCTTTGAAG 61.881 55.000 5.00 0.00 38.60 3.02
5977 6339 1.470996 AAATGGGCAGCCGCTTTGAA 61.471 50.000 5.00 0.00 38.60 2.69
5978 6340 1.470996 AAAATGGGCAGCCGCTTTGA 61.471 50.000 5.00 0.00 38.60 2.69
5979 6341 1.004679 AAAATGGGCAGCCGCTTTG 60.005 52.632 5.00 0.00 38.60 2.77
5980 6342 1.004679 CAAAATGGGCAGCCGCTTT 60.005 52.632 5.00 4.64 38.60 3.51
5981 6343 2.658422 CAAAATGGGCAGCCGCTT 59.342 55.556 5.00 0.00 38.60 4.68
5982 6344 3.384532 CCAAAATGGGCAGCCGCT 61.385 61.111 5.00 0.00 38.60 5.52
5991 6353 2.350458 CCGGTCCAGCCCAAAATGG 61.350 63.158 0.00 0.00 37.97 3.16
5992 6354 1.595093 GACCGGTCCAGCCCAAAATG 61.595 60.000 24.75 0.00 0.00 2.32
5993 6355 1.304134 GACCGGTCCAGCCCAAAAT 60.304 57.895 24.75 0.00 0.00 1.82
5994 6356 2.114411 GACCGGTCCAGCCCAAAA 59.886 61.111 24.75 0.00 0.00 2.44
6004 6366 2.987547 TGGACGTCTGGACCGGTC 60.988 66.667 27.04 27.04 0.00 4.79
6005 6367 3.300765 GTGGACGTCTGGACCGGT 61.301 66.667 16.46 6.92 0.00 5.28
6006 6368 2.167398 ATTGTGGACGTCTGGACCGG 62.167 60.000 16.46 0.00 0.00 5.28
6007 6369 0.736325 GATTGTGGACGTCTGGACCG 60.736 60.000 16.46 0.00 0.00 4.79
6008 6370 0.736325 CGATTGTGGACGTCTGGACC 60.736 60.000 16.46 0.00 0.00 4.46
6009 6371 1.352156 GCGATTGTGGACGTCTGGAC 61.352 60.000 16.46 10.36 0.00 4.02
6010 6372 1.080093 GCGATTGTGGACGTCTGGA 60.080 57.895 16.46 0.00 0.00 3.86
6011 6373 2.100631 GGCGATTGTGGACGTCTGG 61.101 63.158 16.46 0.00 0.00 3.86
6012 6374 0.172578 TAGGCGATTGTGGACGTCTG 59.827 55.000 16.46 0.00 44.04 3.51
6013 6375 0.892755 TTAGGCGATTGTGGACGTCT 59.107 50.000 16.46 0.00 46.01 4.18
6014 6376 1.278238 CTTAGGCGATTGTGGACGTC 58.722 55.000 7.13 7.13 0.00 4.34
6015 6377 0.606604 ACTTAGGCGATTGTGGACGT 59.393 50.000 0.00 0.00 0.00 4.34
6016 6378 1.722011 AACTTAGGCGATTGTGGACG 58.278 50.000 0.00 0.00 0.00 4.79
6017 6379 3.071479 TCAAACTTAGGCGATTGTGGAC 58.929 45.455 0.00 0.00 0.00 4.02
6018 6380 3.071479 GTCAAACTTAGGCGATTGTGGA 58.929 45.455 0.00 0.00 0.00 4.02
6019 6381 2.161609 GGTCAAACTTAGGCGATTGTGG 59.838 50.000 0.00 0.00 0.00 4.17
6020 6382 2.161609 GGGTCAAACTTAGGCGATTGTG 59.838 50.000 0.00 0.00 0.00 3.33
6021 6383 2.433436 GGGTCAAACTTAGGCGATTGT 58.567 47.619 0.00 0.00 0.00 2.71
6022 6384 1.743394 GGGGTCAAACTTAGGCGATTG 59.257 52.381 0.00 0.00 0.00 2.67
6023 6385 1.353022 TGGGGTCAAACTTAGGCGATT 59.647 47.619 0.00 0.00 0.00 3.34
6024 6386 0.988832 TGGGGTCAAACTTAGGCGAT 59.011 50.000 0.00 0.00 0.00 4.58
6025 6387 0.766131 TTGGGGTCAAACTTAGGCGA 59.234 50.000 0.00 0.00 0.00 5.54
6026 6388 0.879090 GTTGGGGTCAAACTTAGGCG 59.121 55.000 0.00 0.00 34.28 5.52
6027 6389 1.989706 TGTTGGGGTCAAACTTAGGC 58.010 50.000 0.00 0.00 34.28 3.93
6028 6390 2.890945 CCTTGTTGGGGTCAAACTTAGG 59.109 50.000 0.00 0.00 34.28 2.69
6029 6391 3.562182 ACCTTGTTGGGGTCAAACTTAG 58.438 45.455 0.00 0.00 41.11 2.18
6030 6392 3.673543 ACCTTGTTGGGGTCAAACTTA 57.326 42.857 0.00 0.00 41.11 2.24
6031 6393 2.543037 ACCTTGTTGGGGTCAAACTT 57.457 45.000 0.00 0.00 41.11 2.66
6037 6399 2.671963 GCCGACCTTGTTGGGGTC 60.672 66.667 2.79 3.08 46.93 4.46
6038 6400 4.280019 GGCCGACCTTGTTGGGGT 62.280 66.667 2.79 0.00 37.56 4.95
6048 6410 1.371558 GGACCATCATAGGCCGACC 59.628 63.158 0.00 0.00 0.00 4.79
6049 6411 1.006102 CGGACCATCATAGGCCGAC 60.006 63.158 0.00 0.00 45.20 4.79
6050 6412 2.207229 CCGGACCATCATAGGCCGA 61.207 63.158 0.00 0.00 45.20 5.54
6051 6413 1.544825 ATCCGGACCATCATAGGCCG 61.545 60.000 6.12 0.00 43.39 6.13
6052 6414 0.250513 GATCCGGACCATCATAGGCC 59.749 60.000 6.12 0.00 0.00 5.19
6053 6415 0.250513 GGATCCGGACCATCATAGGC 59.749 60.000 6.12 0.00 0.00 3.93
6054 6416 1.276421 GTGGATCCGGACCATCATAGG 59.724 57.143 23.09 0.00 39.69 2.57
6055 6417 1.276421 GGTGGATCCGGACCATCATAG 59.724 57.143 23.53 0.00 38.31 2.23
6056 6418 1.348064 GGTGGATCCGGACCATCATA 58.652 55.000 23.53 4.17 38.31 2.15
6057 6419 1.418908 GGGTGGATCCGGACCATCAT 61.419 60.000 27.15 5.75 40.00 2.45
6058 6420 2.070039 GGGTGGATCCGGACCATCA 61.070 63.158 27.15 13.80 40.00 3.07
6059 6421 1.632018 TTGGGTGGATCCGGACCATC 61.632 60.000 23.09 22.28 39.69 3.51
6060 6422 1.211567 TTTGGGTGGATCCGGACCAT 61.212 55.000 23.09 2.30 39.69 3.55
6061 6423 1.427895 TTTTGGGTGGATCCGGACCA 61.428 55.000 20.06 18.36 37.00 4.02
6062 6424 0.963856 GTTTTGGGTGGATCCGGACC 60.964 60.000 6.12 11.46 37.00 4.46
6063 6425 0.963856 GGTTTTGGGTGGATCCGGAC 60.964 60.000 6.12 0.00 37.00 4.79
6064 6426 1.381076 GGTTTTGGGTGGATCCGGA 59.619 57.895 6.61 6.61 37.00 5.14
6065 6427 1.680989 GGGTTTTGGGTGGATCCGG 60.681 63.158 7.39 0.00 37.00 5.14
6066 6428 1.680989 GGGGTTTTGGGTGGATCCG 60.681 63.158 7.39 0.00 37.00 4.18
6067 6429 0.178918 TTGGGGTTTTGGGTGGATCC 60.179 55.000 4.20 4.20 0.00 3.36
6068 6430 0.973632 GTTGGGGTTTTGGGTGGATC 59.026 55.000 0.00 0.00 0.00 3.36
6069 6431 0.830023 CGTTGGGGTTTTGGGTGGAT 60.830 55.000 0.00 0.00 0.00 3.41
6070 6432 1.455959 CGTTGGGGTTTTGGGTGGA 60.456 57.895 0.00 0.00 0.00 4.02
6071 6433 3.133946 CGTTGGGGTTTTGGGTGG 58.866 61.111 0.00 0.00 0.00 4.61
6072 6434 2.419620 GCGTTGGGGTTTTGGGTG 59.580 61.111 0.00 0.00 0.00 4.61
6073 6435 2.840572 GGCGTTGGGGTTTTGGGT 60.841 61.111 0.00 0.00 0.00 4.51
6074 6436 3.621805 GGGCGTTGGGGTTTTGGG 61.622 66.667 0.00 0.00 0.00 4.12
6075 6437 3.984749 CGGGCGTTGGGGTTTTGG 61.985 66.667 0.00 0.00 0.00 3.28
6076 6438 3.220658 ACGGGCGTTGGGGTTTTG 61.221 61.111 0.00 0.00 0.00 2.44
6077 6439 2.621517 TACACGGGCGTTGGGGTTTT 62.622 55.000 0.00 0.00 0.00 2.43
6078 6440 2.414658 ATACACGGGCGTTGGGGTTT 62.415 55.000 0.00 0.00 0.00 3.27
6079 6441 2.414658 AATACACGGGCGTTGGGGTT 62.415 55.000 0.00 0.00 0.00 4.11
6080 6442 2.414658 AAATACACGGGCGTTGGGGT 62.415 55.000 0.00 0.00 0.00 4.95
6081 6443 1.245376 AAAATACACGGGCGTTGGGG 61.245 55.000 0.00 0.00 0.00 4.96
6082 6444 0.599060 AAAAATACACGGGCGTTGGG 59.401 50.000 0.00 0.00 0.00 4.12
6083 6445 2.225963 TGTAAAAATACACGGGCGTTGG 59.774 45.455 0.00 0.00 0.00 3.77
6084 6446 3.539431 TGTAAAAATACACGGGCGTTG 57.461 42.857 0.00 0.00 0.00 4.10
6085 6447 4.456566 AGATTGTAAAAATACACGGGCGTT 59.543 37.500 0.00 0.00 0.00 4.84
6086 6448 4.004982 AGATTGTAAAAATACACGGGCGT 58.995 39.130 0.00 0.00 0.00 5.68
6087 6449 4.339429 CAGATTGTAAAAATACACGGGCG 58.661 43.478 0.00 0.00 0.00 6.13
6088 6450 4.102649 GCAGATTGTAAAAATACACGGGC 58.897 43.478 0.00 0.00 0.00 6.13
6089 6451 4.668289 GGCAGATTGTAAAAATACACGGG 58.332 43.478 0.00 0.00 0.00 5.28
6090 6452 4.339429 CGGCAGATTGTAAAAATACACGG 58.661 43.478 0.00 0.00 0.00 4.94
6091 6453 3.783943 GCGGCAGATTGTAAAAATACACG 59.216 43.478 0.00 0.00 0.00 4.49
6092 6454 4.728534 TGCGGCAGATTGTAAAAATACAC 58.271 39.130 0.00 0.00 0.00 2.90
6093 6455 5.574891 ATGCGGCAGATTGTAAAAATACA 57.425 34.783 9.25 0.00 0.00 2.29
6094 6456 5.276348 GCAATGCGGCAGATTGTAAAAATAC 60.276 40.000 15.44 0.00 33.96 1.89
6095 6457 4.803088 GCAATGCGGCAGATTGTAAAAATA 59.197 37.500 15.44 0.00 33.96 1.40
6096 6458 3.618150 GCAATGCGGCAGATTGTAAAAAT 59.382 39.130 15.44 0.00 33.96 1.82
6097 6459 2.992543 GCAATGCGGCAGATTGTAAAAA 59.007 40.909 15.44 0.00 33.96 1.94
6098 6460 2.029560 TGCAATGCGGCAGATTGTAAAA 60.030 40.909 15.44 0.58 39.25 1.52
6099 6461 1.543358 TGCAATGCGGCAGATTGTAAA 59.457 42.857 15.44 2.57 39.25 2.01
6100 6462 1.172175 TGCAATGCGGCAGATTGTAA 58.828 45.000 15.44 4.59 39.25 2.41
6101 6463 1.172175 TTGCAATGCGGCAGATTGTA 58.828 45.000 15.44 9.85 45.88 2.41
6102 6464 0.533491 ATTGCAATGCGGCAGATTGT 59.467 45.000 12.09 0.00 45.88 2.71
6103 6465 1.205657 GATTGCAATGCGGCAGATTG 58.794 50.000 18.59 10.32 45.88 2.67
6104 6466 0.103572 GGATTGCAATGCGGCAGATT 59.896 50.000 18.59 0.00 45.88 2.40
6105 6467 1.737816 GGATTGCAATGCGGCAGAT 59.262 52.632 18.59 0.00 45.88 2.90
6106 6468 2.417257 GGGATTGCAATGCGGCAGA 61.417 57.895 22.57 0.00 45.88 4.26
6107 6469 2.105528 GGGATTGCAATGCGGCAG 59.894 61.111 22.57 0.00 45.88 4.85
6108 6470 3.459965 GGGGATTGCAATGCGGCA 61.460 61.111 22.57 4.58 43.19 5.69
6109 6471 3.142820 GAGGGGATTGCAATGCGGC 62.143 63.158 22.57 11.11 0.00 6.53
6110 6472 1.731433 CTGAGGGGATTGCAATGCGG 61.731 60.000 22.57 8.10 0.00 5.69
6111 6473 0.749091 TCTGAGGGGATTGCAATGCG 60.749 55.000 22.57 10.13 0.00 4.73
6112 6474 1.700955 ATCTGAGGGGATTGCAATGC 58.299 50.000 21.57 21.57 0.00 3.56
6113 6475 5.386958 CAATATCTGAGGGGATTGCAATG 57.613 43.478 18.59 0.00 0.00 2.82
6118 6480 2.108776 TGGGCAATATCTGAGGGGATTG 59.891 50.000 0.00 0.00 33.36 2.67
6119 6481 2.377869 CTGGGCAATATCTGAGGGGATT 59.622 50.000 0.00 0.00 0.00 3.01
6120 6482 1.991070 CTGGGCAATATCTGAGGGGAT 59.009 52.381 0.00 0.00 0.00 3.85
6121 6483 1.438469 CTGGGCAATATCTGAGGGGA 58.562 55.000 0.00 0.00 0.00 4.81
6122 6484 0.403271 CCTGGGCAATATCTGAGGGG 59.597 60.000 0.00 0.00 0.00 4.79
6123 6485 0.251077 GCCTGGGCAATATCTGAGGG 60.251 60.000 6.75 0.00 41.49 4.30
6124 6486 0.251077 GGCCTGGGCAATATCTGAGG 60.251 60.000 16.34 0.00 44.11 3.86
6125 6487 0.769873 AGGCCTGGGCAATATCTGAG 59.230 55.000 23.25 0.00 44.11 3.35
6126 6488 1.225373 AAGGCCTGGGCAATATCTGA 58.775 50.000 23.25 0.00 44.11 3.27
6127 6489 1.684983 CAAAGGCCTGGGCAATATCTG 59.315 52.381 23.25 6.01 44.11 2.90
6128 6490 2.031097 GCAAAGGCCTGGGCAATATCT 61.031 52.381 23.25 0.00 44.11 1.98
6129 6491 0.390492 GCAAAGGCCTGGGCAATATC 59.610 55.000 23.25 3.56 44.11 1.63
6130 6492 2.519937 GCAAAGGCCTGGGCAATAT 58.480 52.632 23.25 2.51 44.11 1.28
6131 6493 4.032653 GCAAAGGCCTGGGCAATA 57.967 55.556 23.25 0.00 44.11 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.