Multiple sequence alignment - TraesCS4B01G235300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G235300 chr4B 100.000 3480 0 0 1 3480 491463360 491466839 0.000000e+00 6427.0
1 TraesCS4B01G235300 chr4B 96.241 133 5 0 63 195 210282886 210282754 5.850000e-53 219.0
2 TraesCS4B01G235300 chr4B 88.750 80 7 2 1585 1662 413734234 413734313 2.860000e-16 97.1
3 TraesCS4B01G235300 chr4D 93.162 1755 66 26 1654 3382 398669864 398671590 0.000000e+00 2527.0
4 TraesCS4B01G235300 chr4D 91.655 1390 45 25 189 1552 398668485 398669829 0.000000e+00 1858.0
5 TraesCS4B01G235300 chr4A 90.171 1577 58 38 1656 3190 56144572 56146093 0.000000e+00 1964.0
6 TraesCS4B01G235300 chr4A 90.460 870 34 16 745 1599 56143734 56144569 0.000000e+00 1101.0
7 TraesCS4B01G235300 chr4A 85.800 500 30 22 189 667 56142966 56143445 3.120000e-135 492.0
8 TraesCS4B01G235300 chr3B 97.710 131 3 0 61 191 156882331 156882461 3.490000e-55 226.0
9 TraesCS4B01G235300 chr3B 88.043 92 11 0 1725 1816 213981 213890 3.670000e-20 110.0
10 TraesCS4B01G235300 chr3B 88.372 86 10 0 1321 1406 214227 214142 1.710000e-18 104.0
11 TraesCS4B01G235300 chr3A 98.425 127 2 0 65 191 78187594 78187720 1.260000e-54 224.0
12 TraesCS4B01G235300 chr3A 96.970 132 4 0 60 191 741357172 741357303 4.520000e-54 222.0
13 TraesCS4B01G235300 chr3A 95.035 141 6 1 65 205 57867681 57867542 1.630000e-53 220.0
14 TraesCS4B01G235300 chr3A 93.103 145 9 1 51 195 158174969 158174826 9.790000e-51 211.0
15 TraesCS4B01G235300 chr3A 87.805 82 7 3 1585 1664 535225285 535225205 3.700000e-15 93.5
16 TraesCS4B01G235300 chr3A 83.000 100 13 4 1585 1680 178241820 178241721 1.720000e-13 87.9
17 TraesCS4B01G235300 chr2B 94.444 144 5 3 65 207 89552373 89552514 5.850000e-53 219.0
18 TraesCS4B01G235300 chr2B 90.441 136 12 1 2125 2260 624892074 624892208 9.930000e-41 178.0
19 TraesCS4B01G235300 chr2B 89.610 77 6 2 1585 1659 120667536 120667460 2.860000e-16 97.1
20 TraesCS4B01G235300 chr1A 94.928 138 7 0 64 201 202073640 202073503 2.100000e-52 217.0
21 TraesCS4B01G235300 chr1A 90.647 139 10 2 2127 2262 387840975 387840837 7.670000e-42 182.0
22 TraesCS4B01G235300 chr1A 86.905 84 9 2 1585 1666 118503770 118503687 3.700000e-15 93.5
23 TraesCS4B01G235300 chr1A 84.091 88 14 0 1329 1416 387841264 387841177 6.190000e-13 86.1
24 TraesCS4B01G235300 chr6B 92.517 147 10 1 65 210 445884232 445884378 3.520000e-50 209.0
25 TraesCS4B01G235300 chr1B 90.647 139 10 2 2127 2262 418106021 418105883 7.670000e-42 182.0
26 TraesCS4B01G235300 chr1B 85.227 88 13 0 1329 1416 418106305 418106218 1.330000e-14 91.6
27 TraesCS4B01G235300 chr2D 90.441 136 12 1 2125 2260 527547519 527547653 9.930000e-41 178.0
28 TraesCS4B01G235300 chr1D 89.928 139 11 2 2127 2262 308459629 308459491 3.570000e-40 176.0
29 TraesCS4B01G235300 chr1D 86.364 88 12 0 1329 1416 308459917 308459830 2.860000e-16 97.1
30 TraesCS4B01G235300 chr2A 89.552 134 13 1 2127 2260 672415937 672416069 5.970000e-38 169.0
31 TraesCS4B01G235300 chr5D 90.244 123 12 0 2121 2243 344399992 344400114 1.000000e-35 161.0
32 TraesCS4B01G235300 chr5D 83.871 124 15 5 1293 1411 344399581 344399704 2.840000e-21 113.0
33 TraesCS4B01G235300 chr5D 90.541 74 6 1 1585 1657 10396984 10397057 2.860000e-16 97.1
34 TraesCS4B01G235300 chr5A 90.244 123 12 0 2121 2243 448091102 448091224 1.000000e-35 161.0
35 TraesCS4B01G235300 chr5A 83.871 124 15 5 1293 1411 448090690 448090813 2.840000e-21 113.0
36 TraesCS4B01G235300 chr5B 90.000 120 12 0 2124 2243 407817232 407817113 4.650000e-34 156.0
37 TraesCS4B01G235300 chr5B 86.869 99 10 3 1316 1411 407817614 407817516 1.320000e-19 108.0
38 TraesCS4B01G235300 chr5B 89.610 77 6 2 1585 1659 332369707 332369783 2.860000e-16 97.1
39 TraesCS4B01G235300 chr7A 81.429 140 23 3 2128 2265 48756332 48756470 1.020000e-20 111.0
40 TraesCS4B01G235300 chr7D 82.031 128 23 0 2128 2255 46711839 46711712 3.670000e-20 110.0
41 TraesCS4B01G235300 chr7D 84.762 105 16 0 2126 2230 536515360 536515464 4.750000e-19 106.0
42 TraesCS4B01G235300 chr7D 89.855 69 7 0 2133 2201 46586041 46585973 4.780000e-14 89.8
43 TraesCS4B01G235300 chr3D 88.043 92 11 0 1725 1816 3294616 3294525 3.670000e-20 110.0
44 TraesCS4B01G235300 chr3D 87.805 82 7 3 1598 1676 311669774 311669693 3.700000e-15 93.5
45 TraesCS4B01G235300 chr7B 89.610 77 6 2 1585 1659 188606912 188606988 2.860000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G235300 chr4B 491463360 491466839 3479 False 6427.000000 6427 100.000000 1 3480 1 chr4B.!!$F2 3479
1 TraesCS4B01G235300 chr4D 398668485 398671590 3105 False 2192.500000 2527 92.408500 189 3382 2 chr4D.!!$F1 3193
2 TraesCS4B01G235300 chr4A 56142966 56146093 3127 False 1185.666667 1964 88.810333 189 3190 3 chr4A.!!$F1 3001

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
27 28 0.038166 AAAGCGGGATGTGGATGTGT 59.962 50.0 0.00 0.00 0.00 3.72 F
494 514 0.111061 ATGGCTGGCTGTTGAGAACA 59.889 50.0 2.00 0.00 39.52 3.18 F
1470 1730 0.300789 GTTCGAATCGATTCACCGCC 59.699 55.0 31.57 14.34 36.61 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1634 1905 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 R
1636 1907 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.0 5.23 0.0 44.66 1.40 R
3443 3767 0.101579 TGACGTGTCACTTCTTGCGA 59.898 50.0 10.49 0.0 34.14 5.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.403252 CTAGAACCAAAGCGGGATGT 57.597 50.000 0.00 0.00 40.22 3.06
20 21 2.009774 CTAGAACCAAAGCGGGATGTG 58.990 52.381 0.00 0.00 40.22 3.21
21 22 0.609131 AGAACCAAAGCGGGATGTGG 60.609 55.000 0.00 0.00 40.22 4.17
22 23 0.608035 GAACCAAAGCGGGATGTGGA 60.608 55.000 0.00 0.00 40.22 4.02
23 24 0.039618 AACCAAAGCGGGATGTGGAT 59.960 50.000 0.00 0.00 40.22 3.41
24 25 0.680921 ACCAAAGCGGGATGTGGATG 60.681 55.000 0.00 0.00 40.22 3.51
25 26 0.680921 CCAAAGCGGGATGTGGATGT 60.681 55.000 0.00 0.00 32.54 3.06
26 27 0.452987 CAAAGCGGGATGTGGATGTG 59.547 55.000 0.00 0.00 0.00 3.21
27 28 0.038166 AAAGCGGGATGTGGATGTGT 59.962 50.000 0.00 0.00 0.00 3.72
28 29 0.392998 AAGCGGGATGTGGATGTGTC 60.393 55.000 0.00 0.00 0.00 3.67
29 30 1.819632 GCGGGATGTGGATGTGTCC 60.820 63.158 0.00 0.00 45.31 4.02
39 40 2.005971 GGATGTGTCCGTACCTGAAC 57.994 55.000 0.00 0.00 34.13 3.18
40 41 1.625616 GATGTGTCCGTACCTGAACG 58.374 55.000 0.00 0.00 42.49 3.95
46 47 4.759564 CGTACCTGAACGGACGAG 57.240 61.111 0.00 0.00 38.05 4.18
47 48 1.871772 CGTACCTGAACGGACGAGT 59.128 57.895 0.00 0.00 38.05 4.18
48 49 0.179205 CGTACCTGAACGGACGAGTC 60.179 60.000 0.00 0.00 38.05 3.36
49 50 1.163554 GTACCTGAACGGACGAGTCT 58.836 55.000 0.00 0.00 36.31 3.24
50 51 2.350522 GTACCTGAACGGACGAGTCTA 58.649 52.381 0.00 0.00 36.31 2.59
51 52 2.125773 ACCTGAACGGACGAGTCTAT 57.874 50.000 0.00 0.00 36.31 1.98
52 53 2.015587 ACCTGAACGGACGAGTCTATC 58.984 52.381 0.00 0.93 36.31 2.08
53 54 2.014857 CCTGAACGGACGAGTCTATCA 58.985 52.381 0.00 5.00 33.16 2.15
54 55 2.619177 CCTGAACGGACGAGTCTATCAT 59.381 50.000 0.00 0.00 33.16 2.45
55 56 3.304123 CCTGAACGGACGAGTCTATCATC 60.304 52.174 0.00 0.00 33.16 2.92
56 57 3.542648 TGAACGGACGAGTCTATCATCT 58.457 45.455 0.00 0.00 0.00 2.90
57 58 4.700700 TGAACGGACGAGTCTATCATCTA 58.299 43.478 0.00 0.00 0.00 1.98
58 59 5.306394 TGAACGGACGAGTCTATCATCTAT 58.694 41.667 0.00 0.00 0.00 1.98
59 60 6.461640 TGAACGGACGAGTCTATCATCTATA 58.538 40.000 0.00 0.00 0.00 1.31
60 61 6.368243 TGAACGGACGAGTCTATCATCTATAC 59.632 42.308 0.00 0.00 0.00 1.47
61 62 5.791666 ACGGACGAGTCTATCATCTATACA 58.208 41.667 0.00 0.00 0.00 2.29
62 63 5.638657 ACGGACGAGTCTATCATCTATACAC 59.361 44.000 0.00 0.00 0.00 2.90
63 64 5.220247 CGGACGAGTCTATCATCTATACACG 60.220 48.000 3.09 0.00 0.00 4.49
64 65 5.638657 GGACGAGTCTATCATCTATACACGT 59.361 44.000 3.09 0.00 0.00 4.49
65 66 6.810676 GGACGAGTCTATCATCTATACACGTA 59.189 42.308 3.09 0.00 0.00 3.57
66 67 7.201427 GGACGAGTCTATCATCTATACACGTAC 60.201 44.444 3.09 0.00 0.00 3.67
67 68 7.377398 ACGAGTCTATCATCTATACACGTACT 58.623 38.462 0.00 0.00 0.00 2.73
68 69 7.541783 ACGAGTCTATCATCTATACACGTACTC 59.458 40.741 0.00 0.00 0.00 2.59
69 70 7.009448 CGAGTCTATCATCTATACACGTACTCC 59.991 44.444 0.00 0.00 0.00 3.85
70 71 7.104939 AGTCTATCATCTATACACGTACTCCC 58.895 42.308 0.00 0.00 0.00 4.30
71 72 7.038160 AGTCTATCATCTATACACGTACTCCCT 60.038 40.741 0.00 0.00 0.00 4.20
72 73 7.278424 GTCTATCATCTATACACGTACTCCCTC 59.722 44.444 0.00 0.00 0.00 4.30
73 74 4.649692 TCATCTATACACGTACTCCCTCC 58.350 47.826 0.00 0.00 0.00 4.30
74 75 3.117491 TCTATACACGTACTCCCTCCG 57.883 52.381 0.00 0.00 0.00 4.63
75 76 2.435805 TCTATACACGTACTCCCTCCGT 59.564 50.000 0.00 0.00 34.71 4.69
76 77 2.134789 ATACACGTACTCCCTCCGTT 57.865 50.000 0.00 0.00 31.46 4.44
77 78 1.909700 TACACGTACTCCCTCCGTTT 58.090 50.000 0.00 0.00 31.46 3.60
78 79 0.600057 ACACGTACTCCCTCCGTTTC 59.400 55.000 0.00 0.00 31.46 2.78
79 80 0.455633 CACGTACTCCCTCCGTTTCG 60.456 60.000 0.00 0.00 31.46 3.46
80 81 0.606401 ACGTACTCCCTCCGTTTCGA 60.606 55.000 0.00 0.00 0.00 3.71
81 82 0.523072 CGTACTCCCTCCGTTTCGAA 59.477 55.000 0.00 0.00 0.00 3.71
82 83 1.133790 CGTACTCCCTCCGTTTCGAAT 59.866 52.381 0.00 0.00 0.00 3.34
83 84 2.416431 CGTACTCCCTCCGTTTCGAATT 60.416 50.000 0.00 0.00 0.00 2.17
84 85 3.181497 CGTACTCCCTCCGTTTCGAATTA 60.181 47.826 0.00 0.00 0.00 1.40
85 86 3.242549 ACTCCCTCCGTTTCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
86 87 2.830321 ACTCCCTCCGTTTCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
87 88 3.260128 ACTCCCTCCGTTTCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
88 89 3.592059 TCCCTCCGTTTCGAATTACTTG 58.408 45.455 0.00 0.00 0.00 3.16
89 90 3.007182 TCCCTCCGTTTCGAATTACTTGT 59.993 43.478 0.00 0.00 0.00 3.16
90 91 3.370061 CCCTCCGTTTCGAATTACTTGTC 59.630 47.826 0.00 0.00 0.00 3.18
91 92 4.243270 CCTCCGTTTCGAATTACTTGTCT 58.757 43.478 0.00 0.00 0.00 3.41
92 93 4.689345 CCTCCGTTTCGAATTACTTGTCTT 59.311 41.667 0.00 0.00 0.00 3.01
93 94 5.389516 CCTCCGTTTCGAATTACTTGTCTTG 60.390 44.000 0.00 0.00 0.00 3.02
94 95 4.449743 TCCGTTTCGAATTACTTGTCTTGG 59.550 41.667 0.00 0.00 0.00 3.61
95 96 4.449743 CCGTTTCGAATTACTTGTCTTGGA 59.550 41.667 0.00 0.00 0.00 3.53
96 97 5.121768 CCGTTTCGAATTACTTGTCTTGGAT 59.878 40.000 0.00 0.00 0.00 3.41
97 98 6.348213 CCGTTTCGAATTACTTGTCTTGGATT 60.348 38.462 0.00 0.00 0.00 3.01
98 99 7.075741 CGTTTCGAATTACTTGTCTTGGATTT 58.924 34.615 0.00 0.00 0.00 2.17
99 100 7.059488 CGTTTCGAATTACTTGTCTTGGATTTG 59.941 37.037 0.00 0.00 0.00 2.32
100 101 7.504924 TTCGAATTACTTGTCTTGGATTTGT 57.495 32.000 0.00 0.00 0.00 2.83
101 102 7.129109 TCGAATTACTTGTCTTGGATTTGTC 57.871 36.000 0.00 0.00 0.00 3.18
102 103 6.934645 TCGAATTACTTGTCTTGGATTTGTCT 59.065 34.615 0.00 0.00 0.00 3.41
103 104 8.092068 TCGAATTACTTGTCTTGGATTTGTCTA 58.908 33.333 0.00 0.00 0.00 2.59
104 105 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
105 106 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
106 107 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
108 109 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
109 110 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
110 111 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
111 112 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
112 113 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
113 114 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
114 115 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
115 116 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
116 117 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
147 148 9.998106 ACTTATTTTAATGCTAGATACATCCGT 57.002 29.630 0.00 0.00 0.00 4.69
165 166 8.693120 ACATCCGTATCTAGACAAATCTAAGA 57.307 34.615 0.00 0.00 36.98 2.10
166 167 8.569641 ACATCCGTATCTAGACAAATCTAAGAC 58.430 37.037 0.00 0.00 36.98 3.01
167 168 8.568794 CATCCGTATCTAGACAAATCTAAGACA 58.431 37.037 0.00 0.00 36.98 3.41
168 169 8.515695 TCCGTATCTAGACAAATCTAAGACAA 57.484 34.615 0.00 0.00 36.98 3.18
169 170 8.622157 TCCGTATCTAGACAAATCTAAGACAAG 58.378 37.037 0.00 0.00 36.98 3.16
170 171 8.407064 CCGTATCTAGACAAATCTAAGACAAGT 58.593 37.037 0.00 0.00 36.98 3.16
177 178 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
178 179 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
179 180 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
180 181 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
243 244 1.605712 CCCTCGGTGAACAGAACAGAC 60.606 57.143 0.00 0.00 0.00 3.51
244 245 1.341531 CCTCGGTGAACAGAACAGACT 59.658 52.381 0.00 0.00 0.00 3.24
245 246 2.608261 CCTCGGTGAACAGAACAGACTC 60.608 54.545 0.00 0.00 0.00 3.36
344 356 3.249189 ACAAGGGGCCAAGCGAGA 61.249 61.111 4.39 0.00 0.00 4.04
422 438 1.628340 CGGCACCCCTAATCATCCATA 59.372 52.381 0.00 0.00 0.00 2.74
423 439 2.039746 CGGCACCCCTAATCATCCATAA 59.960 50.000 0.00 0.00 0.00 1.90
456 476 6.748658 ACGAGAAAAACCTAAAAGAAAAACCG 59.251 34.615 0.00 0.00 0.00 4.44
458 478 6.342906 AGAAAAACCTAAAAGAAAAACCGGG 58.657 36.000 6.32 0.00 0.00 5.73
494 514 0.111061 ATGGCTGGCTGTTGAGAACA 59.889 50.000 2.00 0.00 39.52 3.18
532 552 4.680237 TGCAGGAGGGAACACGCG 62.680 66.667 3.53 3.53 0.00 6.01
550 570 1.618030 GCAGGGAGGGAGAGAGAGA 59.382 63.158 0.00 0.00 0.00 3.10
555 575 1.421646 GGGAGGGAGAGAGAGAGAGAG 59.578 61.905 0.00 0.00 0.00 3.20
603 627 2.359404 GAGTCTGGACCCTCCCGA 59.641 66.667 0.00 0.00 35.03 5.14
809 1050 4.007581 TCATTCCCCTCACTCATTCCTA 57.992 45.455 0.00 0.00 0.00 2.94
821 1062 1.368203 TCATTCCTACCTTCCTCCCCA 59.632 52.381 0.00 0.00 0.00 4.96
833 1084 2.540910 TCCCCACCCCTCTCCTCT 60.541 66.667 0.00 0.00 0.00 3.69
882 1133 3.414700 CGCGACACCCTGCAAGAC 61.415 66.667 0.00 0.00 34.07 3.01
907 1158 2.125106 AGGATTCAAGTCGGCGCC 60.125 61.111 19.07 19.07 0.00 6.53
908 1159 2.125106 GGATTCAAGTCGGCGCCT 60.125 61.111 26.68 1.82 0.00 5.52
909 1160 2.464459 GGATTCAAGTCGGCGCCTG 61.464 63.158 26.68 16.38 0.00 4.85
910 1161 2.436646 ATTCAAGTCGGCGCCTGG 60.437 61.111 26.68 10.37 0.00 4.45
944 1197 6.045318 GCAGATAGACAAGATAGTTTGCTGA 58.955 40.000 0.00 0.00 0.00 4.26
993 1246 2.390599 GCTCTGCCGATTTGTGCGA 61.391 57.895 0.00 0.00 0.00 5.10
1112 1365 4.688419 CCGCGGCAACAACAGCAG 62.688 66.667 14.67 0.00 0.00 4.24
1179 1432 3.329542 GACCCTCAGCATGCCGGAA 62.330 63.158 15.66 0.00 34.76 4.30
1195 1448 0.400213 GGAAGACACCACCATGACCA 59.600 55.000 0.00 0.00 0.00 4.02
1227 1480 2.048597 GGCGTGTCGTCCATGTCA 60.049 61.111 0.00 0.00 34.69 3.58
1470 1730 0.300789 GTTCGAATCGATTCACCGCC 59.699 55.000 31.57 14.34 36.61 6.13
1527 1788 4.877378 ATCATCTGCTGAGATCTTCTCC 57.123 45.455 0.00 0.00 42.73 3.71
1532 1795 5.432680 TCTGCTGAGATCTTCTCCATTTT 57.567 39.130 0.00 0.00 42.73 1.82
1536 1799 4.730035 GCTGAGATCTTCTCCATTTTTGCG 60.730 45.833 0.00 0.00 42.73 4.85
1537 1800 3.127548 TGAGATCTTCTCCATTTTTGCGC 59.872 43.478 0.00 0.00 42.73 6.09
1592 1863 8.697507 ACAAATCTGGTTTACTTTCTTGATCT 57.302 30.769 0.00 0.00 0.00 2.75
1599 1870 9.838339 CTGGTTTACTTTCTTGATCTATGGTAT 57.162 33.333 0.00 0.00 0.00 2.73
1643 1914 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
1644 1915 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
1645 1916 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
1646 1917 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1647 1918 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1648 1919 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1649 1920 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1650 1921 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1651 1922 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1652 1923 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1871 2151 3.199727 TGATATTGCCACTCCAGCTTACA 59.800 43.478 0.00 0.00 0.00 2.41
1967 2247 6.479095 AAAATACACGGGCAATCATTTTTG 57.521 33.333 0.00 0.00 0.00 2.44
1968 2248 4.799564 ATACACGGGCAATCATTTTTGT 57.200 36.364 0.00 0.00 0.00 2.83
1969 2249 2.753296 ACACGGGCAATCATTTTTGTG 58.247 42.857 0.00 0.00 0.00 3.33
1970 2250 2.102252 ACACGGGCAATCATTTTTGTGT 59.898 40.909 0.00 0.00 34.73 3.72
1971 2251 2.475864 CACGGGCAATCATTTTTGTGTG 59.524 45.455 0.00 0.00 0.00 3.82
1972 2252 2.102252 ACGGGCAATCATTTTTGTGTGT 59.898 40.909 0.00 0.00 0.00 3.72
1973 2253 3.129871 CGGGCAATCATTTTTGTGTGTT 58.870 40.909 0.00 0.00 0.00 3.32
1974 2254 3.059733 CGGGCAATCATTTTTGTGTGTTG 60.060 43.478 0.00 0.00 0.00 3.33
1975 2255 3.303924 GGGCAATCATTTTTGTGTGTTGC 60.304 43.478 0.00 0.00 39.11 4.17
1976 2256 3.311871 GGCAATCATTTTTGTGTGTTGCA 59.688 39.130 9.06 0.00 40.28 4.08
2003 2283 7.325660 TGCACTCCTATCTCAATTCATTTTC 57.674 36.000 0.00 0.00 0.00 2.29
2061 2341 3.617284 CCTCTGCCTAAAATTACGGGTT 58.383 45.455 0.00 0.00 0.00 4.11
2075 2355 0.310854 CGGGTTGTTTCAGTTCTGGC 59.689 55.000 0.00 0.00 0.00 4.85
2091 2371 3.482436 TCTGGCGGTGAACTTTTTGTAT 58.518 40.909 0.00 0.00 0.00 2.29
2093 2374 4.693566 TCTGGCGGTGAACTTTTTGTATAG 59.306 41.667 0.00 0.00 0.00 1.31
2458 2742 2.666317 CACCACTTCTTCAACCCCTTT 58.334 47.619 0.00 0.00 0.00 3.11
2489 2773 2.588314 CCTGCTGATCTGCGCTCC 60.588 66.667 18.32 0.00 35.36 4.70
2490 2774 2.186125 CTGCTGATCTGCGCTCCA 59.814 61.111 18.32 0.00 35.36 3.86
2491 2775 2.125391 TGCTGATCTGCGCTCCAC 60.125 61.111 18.32 0.00 35.36 4.02
2493 2777 2.584418 CTGATCTGCGCTCCACCG 60.584 66.667 9.73 0.00 0.00 4.94
2495 2779 3.838271 GATCTGCGCTCCACCGGA 61.838 66.667 9.46 0.00 0.00 5.14
2530 2821 1.202302 ACGACGCTCATCAACATCGAT 60.202 47.619 0.00 0.00 33.88 3.59
2556 2855 0.387367 CACCGCCATAGCTAGCTACG 60.387 60.000 26.41 22.99 36.60 3.51
2646 2954 1.409241 GCAGGACATGGACATGGACAT 60.409 52.381 15.94 5.42 42.91 3.06
2762 3076 6.776116 TCCATAGACGATAGGTAGTCAAACAT 59.224 38.462 0.00 0.00 39.67 2.71
2763 3077 7.040617 TCCATAGACGATAGGTAGTCAAACATC 60.041 40.741 0.00 0.00 39.67 3.06
2764 3078 5.517322 AGACGATAGGTAGTCAAACATCC 57.483 43.478 0.00 0.00 39.67 3.51
2765 3079 4.954202 AGACGATAGGTAGTCAAACATCCA 59.046 41.667 0.00 0.00 39.67 3.41
2778 3092 1.486211 ACATCCAGCCGTAGTAGCTT 58.514 50.000 0.00 0.00 38.95 3.74
2779 3093 1.831736 ACATCCAGCCGTAGTAGCTTT 59.168 47.619 0.00 0.00 38.95 3.51
2823 3140 3.606846 CGGCCATTGTATATTCTTGTGCG 60.607 47.826 2.24 0.00 0.00 5.34
2908 3232 7.255451 GCTGATTATCGGAGAGGAGATAATAGG 60.255 44.444 5.05 7.59 45.03 2.57
2909 3233 7.644062 TGATTATCGGAGAGGAGATAATAGGT 58.356 38.462 9.74 0.00 45.03 3.08
2979 3303 2.970640 TGGATGATGACATGAGAGAGGG 59.029 50.000 0.00 0.00 36.82 4.30
2980 3304 2.289569 GGATGATGACATGAGAGAGGGC 60.290 54.545 0.00 0.00 36.82 5.19
2981 3305 2.171568 TGATGACATGAGAGAGGGCT 57.828 50.000 0.00 0.00 0.00 5.19
2982 3306 3.319031 TGATGACATGAGAGAGGGCTA 57.681 47.619 0.00 0.00 0.00 3.93
2983 3307 3.229293 TGATGACATGAGAGAGGGCTAG 58.771 50.000 0.00 0.00 0.00 3.42
2984 3308 3.117360 TGATGACATGAGAGAGGGCTAGA 60.117 47.826 0.00 0.00 0.00 2.43
2985 3309 2.942804 TGACATGAGAGAGGGCTAGAG 58.057 52.381 0.00 0.00 0.00 2.43
2986 3310 2.511637 TGACATGAGAGAGGGCTAGAGA 59.488 50.000 0.00 0.00 0.00 3.10
2987 3311 3.149196 GACATGAGAGAGGGCTAGAGAG 58.851 54.545 0.00 0.00 0.00 3.20
2988 3312 2.782925 ACATGAGAGAGGGCTAGAGAGA 59.217 50.000 0.00 0.00 0.00 3.10
2989 3313 3.181440 ACATGAGAGAGGGCTAGAGAGAG 60.181 52.174 0.00 0.00 0.00 3.20
2990 3314 1.774254 TGAGAGAGGGCTAGAGAGAGG 59.226 57.143 0.00 0.00 0.00 3.69
2991 3315 0.478507 AGAGAGGGCTAGAGAGAGGC 59.521 60.000 0.00 0.00 41.20 4.70
2992 3316 0.478507 GAGAGGGCTAGAGAGAGGCT 59.521 60.000 0.00 0.00 41.63 4.58
2993 3317 0.478507 AGAGGGCTAGAGAGAGGCTC 59.521 60.000 6.34 6.34 44.29 4.70
3073 3397 6.183360 TGCATATACGTTTCAATGATTGTGCT 60.183 34.615 4.93 0.00 0.00 4.40
3104 3428 4.460505 CTTAAACTTTACTTTGCGTCCCG 58.539 43.478 0.00 0.00 0.00 5.14
3220 3544 3.205338 ACACCGTTGTAAGTTGTAACCC 58.795 45.455 0.00 0.00 32.60 4.11
3222 3546 2.172293 ACCGTTGTAAGTTGTAACCCCA 59.828 45.455 0.00 0.00 0.00 4.96
3259 3583 2.878406 CCAATTTTCACACGACCACTCT 59.122 45.455 0.00 0.00 0.00 3.24
3282 3606 5.784177 TGATTTGACTAGAAAGAAGCTCGT 58.216 37.500 0.00 0.00 0.00 4.18
3301 3625 5.100344 TCGTGGTATTGCCTGGTAATTAA 57.900 39.130 15.26 0.00 38.35 1.40
3308 3632 6.707161 GGTATTGCCTGGTAATTAATGACGTA 59.293 38.462 15.26 0.00 0.00 3.57
3319 3643 1.435577 AATGACGTACGGTTTCTGCC 58.564 50.000 21.06 0.00 0.00 4.85
3325 3649 1.403647 CGTACGGTTTCTGCCTCATCA 60.404 52.381 7.57 0.00 0.00 3.07
3335 3659 3.248888 TCTGCCTCATCATCCATCAGAT 58.751 45.455 0.00 0.00 34.66 2.90
3353 3677 7.065085 CCATCAGATGTCGTTTTCAGTTAGATT 59.935 37.037 9.64 0.00 0.00 2.40
3405 3729 6.966534 AAAAACACCATGACTCTTGATCTT 57.033 33.333 0.00 0.00 0.00 2.40
3406 3730 6.566197 AAAACACCATGACTCTTGATCTTC 57.434 37.500 0.00 0.00 0.00 2.87
3407 3731 5.495926 AACACCATGACTCTTGATCTTCT 57.504 39.130 0.00 0.00 0.00 2.85
3408 3732 4.829968 ACACCATGACTCTTGATCTTCTG 58.170 43.478 0.00 0.00 0.00 3.02
3409 3733 3.622163 CACCATGACTCTTGATCTTCTGC 59.378 47.826 0.00 0.00 0.00 4.26
3410 3734 3.204526 CCATGACTCTTGATCTTCTGCC 58.795 50.000 0.00 0.00 0.00 4.85
3411 3735 3.118334 CCATGACTCTTGATCTTCTGCCT 60.118 47.826 0.00 0.00 0.00 4.75
3412 3736 4.515361 CATGACTCTTGATCTTCTGCCTT 58.485 43.478 0.00 0.00 0.00 4.35
3413 3737 3.935315 TGACTCTTGATCTTCTGCCTTG 58.065 45.455 0.00 0.00 0.00 3.61
3414 3738 3.580022 TGACTCTTGATCTTCTGCCTTGA 59.420 43.478 0.00 0.00 0.00 3.02
3415 3739 4.224594 TGACTCTTGATCTTCTGCCTTGAT 59.775 41.667 0.00 0.00 0.00 2.57
3416 3740 5.176741 ACTCTTGATCTTCTGCCTTGATT 57.823 39.130 0.00 0.00 0.00 2.57
3417 3741 5.568392 ACTCTTGATCTTCTGCCTTGATTT 58.432 37.500 0.00 0.00 0.00 2.17
3418 3742 5.647225 ACTCTTGATCTTCTGCCTTGATTTC 59.353 40.000 0.00 0.00 0.00 2.17
3419 3743 5.813383 TCTTGATCTTCTGCCTTGATTTCT 58.187 37.500 0.00 0.00 0.00 2.52
3420 3744 5.879223 TCTTGATCTTCTGCCTTGATTTCTC 59.121 40.000 0.00 0.00 0.00 2.87
3421 3745 5.432680 TGATCTTCTGCCTTGATTTCTCT 57.567 39.130 0.00 0.00 0.00 3.10
3422 3746 6.550938 TGATCTTCTGCCTTGATTTCTCTA 57.449 37.500 0.00 0.00 0.00 2.43
3423 3747 7.134362 TGATCTTCTGCCTTGATTTCTCTAT 57.866 36.000 0.00 0.00 0.00 1.98
3424 3748 6.990939 TGATCTTCTGCCTTGATTTCTCTATG 59.009 38.462 0.00 0.00 0.00 2.23
3425 3749 5.121811 TCTTCTGCCTTGATTTCTCTATGC 58.878 41.667 0.00 0.00 0.00 3.14
3426 3750 4.492494 TCTGCCTTGATTTCTCTATGCA 57.508 40.909 0.00 0.00 0.00 3.96
3427 3751 5.045012 TCTGCCTTGATTTCTCTATGCAT 57.955 39.130 3.79 3.79 30.40 3.96
3428 3752 6.178607 TCTGCCTTGATTTCTCTATGCATA 57.821 37.500 6.20 6.20 30.40 3.14
3429 3753 6.776744 TCTGCCTTGATTTCTCTATGCATAT 58.223 36.000 6.92 0.00 30.40 1.78
3430 3754 6.653740 TCTGCCTTGATTTCTCTATGCATATG 59.346 38.462 6.92 0.00 30.40 1.78
3431 3755 5.708697 TGCCTTGATTTCTCTATGCATATGG 59.291 40.000 6.92 3.45 0.00 2.74
3432 3756 5.942236 GCCTTGATTTCTCTATGCATATGGA 59.058 40.000 6.92 1.06 0.00 3.41
3433 3757 6.602406 GCCTTGATTTCTCTATGCATATGGAT 59.398 38.462 14.59 14.59 0.00 3.41
3434 3758 7.122353 GCCTTGATTTCTCTATGCATATGGATT 59.878 37.037 15.41 0.00 0.00 3.01
3435 3759 8.459635 CCTTGATTTCTCTATGCATATGGATTG 58.540 37.037 15.41 13.22 0.00 2.67
3436 3760 9.227777 CTTGATTTCTCTATGCATATGGATTGA 57.772 33.333 15.41 16.65 0.00 2.57
3437 3761 8.788325 TGATTTCTCTATGCATATGGATTGAG 57.212 34.615 29.56 29.56 43.17 3.02
3438 3762 7.336176 TGATTTCTCTATGCATATGGATTGAGC 59.664 37.037 30.17 21.26 42.20 4.26
3439 3763 4.752146 TCTCTATGCATATGGATTGAGCG 58.248 43.478 30.17 17.40 42.20 5.03
3440 3764 4.463891 TCTCTATGCATATGGATTGAGCGA 59.536 41.667 30.17 18.89 42.20 4.93
3441 3765 4.752146 TCTATGCATATGGATTGAGCGAG 58.248 43.478 15.41 5.63 0.00 5.03
3442 3766 1.516161 TGCATATGGATTGAGCGAGC 58.484 50.000 4.56 0.00 0.00 5.03
3443 3767 1.071228 TGCATATGGATTGAGCGAGCT 59.929 47.619 4.56 0.00 0.00 4.09
3444 3768 1.731160 GCATATGGATTGAGCGAGCTC 59.269 52.381 17.42 17.42 43.01 4.09
3445 3769 1.991264 CATATGGATTGAGCGAGCTCG 59.009 52.381 31.37 31.37 45.48 5.03
3462 3786 2.588731 CGCAAGAAGTGACACGTCA 58.411 52.632 21.20 0.00 43.02 4.35
3463 3787 0.927537 CGCAAGAAGTGACACGTCAA 59.072 50.000 21.20 0.00 40.15 3.18
3464 3788 1.326245 CGCAAGAAGTGACACGTCAAA 59.674 47.619 21.20 0.00 40.15 2.69
3465 3789 2.597505 CGCAAGAAGTGACACGTCAAAG 60.598 50.000 21.20 12.17 40.15 2.77
3466 3790 2.286418 GCAAGAAGTGACACGTCAAAGG 60.286 50.000 21.20 9.82 41.85 3.11
3467 3791 2.240493 AGAAGTGACACGTCAAAGGG 57.760 50.000 21.20 0.00 41.85 3.95
3468 3792 1.760613 AGAAGTGACACGTCAAAGGGA 59.239 47.619 21.20 0.00 41.85 4.20
3469 3793 2.169769 AGAAGTGACACGTCAAAGGGAA 59.830 45.455 21.20 0.00 41.85 3.97
3470 3794 2.702592 AGTGACACGTCAAAGGGAAA 57.297 45.000 0.50 0.00 41.85 3.13
3471 3795 2.561569 AGTGACACGTCAAAGGGAAAG 58.438 47.619 0.50 0.00 41.85 2.62
3472 3796 1.602377 GTGACACGTCAAAGGGAAAGG 59.398 52.381 0.50 0.00 41.85 3.11
3473 3797 1.235724 GACACGTCAAAGGGAAAGGG 58.764 55.000 0.00 0.00 0.00 3.95
3474 3798 0.549469 ACACGTCAAAGGGAAAGGGT 59.451 50.000 0.00 0.00 0.00 4.34
3475 3799 1.064240 ACACGTCAAAGGGAAAGGGTT 60.064 47.619 0.00 0.00 0.00 4.11
3476 3800 2.028876 CACGTCAAAGGGAAAGGGTTT 58.971 47.619 0.00 0.00 0.00 3.27
3477 3801 2.028876 ACGTCAAAGGGAAAGGGTTTG 58.971 47.619 0.00 0.00 33.32 2.93
3478 3802 1.339929 CGTCAAAGGGAAAGGGTTTGG 59.660 52.381 0.00 0.00 32.96 3.28
3479 3803 2.394632 GTCAAAGGGAAAGGGTTTGGT 58.605 47.619 0.00 0.00 32.96 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.009774 CACATCCCGCTTTGGTTCTAG 58.990 52.381 0.00 0.00 35.15 2.43
1 2 1.339631 CCACATCCCGCTTTGGTTCTA 60.340 52.381 0.00 0.00 35.15 2.10
2 3 0.609131 CCACATCCCGCTTTGGTTCT 60.609 55.000 0.00 0.00 35.15 3.01
3 4 0.608035 TCCACATCCCGCTTTGGTTC 60.608 55.000 0.00 0.00 35.15 3.62
4 5 0.039618 ATCCACATCCCGCTTTGGTT 59.960 50.000 0.00 0.00 35.15 3.67
5 6 0.680921 CATCCACATCCCGCTTTGGT 60.681 55.000 0.00 0.00 35.15 3.67
6 7 0.680921 ACATCCACATCCCGCTTTGG 60.681 55.000 0.00 0.00 37.55 3.28
7 8 0.452987 CACATCCACATCCCGCTTTG 59.547 55.000 0.00 0.00 0.00 2.77
8 9 0.038166 ACACATCCACATCCCGCTTT 59.962 50.000 0.00 0.00 0.00 3.51
9 10 0.392998 GACACATCCACATCCCGCTT 60.393 55.000 0.00 0.00 0.00 4.68
10 11 1.221840 GACACATCCACATCCCGCT 59.778 57.895 0.00 0.00 0.00 5.52
11 12 1.819632 GGACACATCCACATCCCGC 60.820 63.158 0.00 0.00 45.47 6.13
12 13 1.521457 CGGACACATCCACATCCCG 60.521 63.158 0.00 0.00 46.67 5.14
13 14 0.828022 TACGGACACATCCACATCCC 59.172 55.000 0.00 0.00 46.67 3.85
14 15 1.472728 GGTACGGACACATCCACATCC 60.473 57.143 0.00 0.00 46.67 3.51
15 16 1.480954 AGGTACGGACACATCCACATC 59.519 52.381 0.00 0.00 46.67 3.06
16 17 1.207089 CAGGTACGGACACATCCACAT 59.793 52.381 0.00 0.00 46.67 3.21
17 18 0.606096 CAGGTACGGACACATCCACA 59.394 55.000 0.00 0.00 46.67 4.17
18 19 0.892755 TCAGGTACGGACACATCCAC 59.107 55.000 0.00 0.00 46.67 4.02
19 20 1.274167 GTTCAGGTACGGACACATCCA 59.726 52.381 0.00 0.00 46.67 3.41
20 21 1.734707 CGTTCAGGTACGGACACATCC 60.735 57.143 0.00 0.00 42.28 3.51
21 22 1.625616 CGTTCAGGTACGGACACATC 58.374 55.000 0.00 0.00 37.86 3.06
22 23 3.806591 CGTTCAGGTACGGACACAT 57.193 52.632 0.00 0.00 37.86 3.21
29 30 0.179205 GACTCGTCCGTTCAGGTACG 60.179 60.000 0.00 0.00 41.55 3.67
30 31 1.163554 AGACTCGTCCGTTCAGGTAC 58.836 55.000 0.00 0.00 41.99 3.34
31 32 2.768253 TAGACTCGTCCGTTCAGGTA 57.232 50.000 0.00 0.00 41.99 3.08
32 33 2.015587 GATAGACTCGTCCGTTCAGGT 58.984 52.381 0.00 0.00 41.99 4.00
33 34 2.014857 TGATAGACTCGTCCGTTCAGG 58.985 52.381 0.00 0.00 42.97 3.86
34 35 3.562141 AGATGATAGACTCGTCCGTTCAG 59.438 47.826 0.00 0.00 40.27 3.02
35 36 3.542648 AGATGATAGACTCGTCCGTTCA 58.457 45.455 0.00 0.00 40.27 3.18
36 37 5.866335 ATAGATGATAGACTCGTCCGTTC 57.134 43.478 0.00 0.00 40.27 3.95
37 38 6.147492 GTGTATAGATGATAGACTCGTCCGTT 59.853 42.308 0.00 0.00 40.27 4.44
38 39 5.638657 GTGTATAGATGATAGACTCGTCCGT 59.361 44.000 0.00 0.00 40.27 4.69
39 40 5.220247 CGTGTATAGATGATAGACTCGTCCG 60.220 48.000 0.00 0.00 40.27 4.79
40 41 5.638657 ACGTGTATAGATGATAGACTCGTCC 59.361 44.000 4.53 0.00 40.27 4.79
41 42 6.709145 ACGTGTATAGATGATAGACTCGTC 57.291 41.667 4.53 0.00 35.06 4.20
42 43 7.377398 AGTACGTGTATAGATGATAGACTCGT 58.623 38.462 12.39 12.39 40.36 4.18
43 44 7.009448 GGAGTACGTGTATAGATGATAGACTCG 59.991 44.444 0.00 3.48 33.13 4.18
44 45 7.278424 GGGAGTACGTGTATAGATGATAGACTC 59.722 44.444 0.00 0.00 33.13 3.36
45 46 7.038160 AGGGAGTACGTGTATAGATGATAGACT 60.038 40.741 0.00 0.00 33.13 3.24
46 47 7.104939 AGGGAGTACGTGTATAGATGATAGAC 58.895 42.308 0.00 0.00 32.18 2.59
47 48 7.255199 AGGGAGTACGTGTATAGATGATAGA 57.745 40.000 0.00 0.00 0.00 1.98
48 49 6.539464 GGAGGGAGTACGTGTATAGATGATAG 59.461 46.154 0.00 0.00 0.00 2.08
49 50 6.413052 GGAGGGAGTACGTGTATAGATGATA 58.587 44.000 0.00 0.00 0.00 2.15
50 51 5.254901 GGAGGGAGTACGTGTATAGATGAT 58.745 45.833 0.00 0.00 0.00 2.45
51 52 4.649692 GGAGGGAGTACGTGTATAGATGA 58.350 47.826 0.00 0.00 0.00 2.92
52 53 3.436015 CGGAGGGAGTACGTGTATAGATG 59.564 52.174 0.00 0.00 0.00 2.90
53 54 3.072184 ACGGAGGGAGTACGTGTATAGAT 59.928 47.826 0.00 0.00 39.64 1.98
54 55 2.435805 ACGGAGGGAGTACGTGTATAGA 59.564 50.000 0.00 0.00 39.64 1.98
55 56 2.843701 ACGGAGGGAGTACGTGTATAG 58.156 52.381 0.00 0.00 39.64 1.31
56 57 3.281727 AACGGAGGGAGTACGTGTATA 57.718 47.619 0.00 0.00 41.12 1.47
57 58 2.134789 AACGGAGGGAGTACGTGTAT 57.865 50.000 0.00 0.00 41.12 2.29
58 59 1.812571 GAAACGGAGGGAGTACGTGTA 59.187 52.381 0.00 0.00 41.12 2.90
59 60 0.600057 GAAACGGAGGGAGTACGTGT 59.400 55.000 0.00 0.00 41.12 4.49
60 61 0.455633 CGAAACGGAGGGAGTACGTG 60.456 60.000 0.00 0.00 41.12 4.49
61 62 0.606401 TCGAAACGGAGGGAGTACGT 60.606 55.000 0.00 0.00 43.43 3.57
62 63 0.523072 TTCGAAACGGAGGGAGTACG 59.477 55.000 0.00 0.00 0.00 3.67
63 64 2.955477 ATTCGAAACGGAGGGAGTAC 57.045 50.000 0.00 0.00 0.00 2.73
64 65 4.019174 AGTAATTCGAAACGGAGGGAGTA 58.981 43.478 0.00 0.00 0.00 2.59
65 66 2.830321 AGTAATTCGAAACGGAGGGAGT 59.170 45.455 0.00 0.00 0.00 3.85
66 67 3.521947 AGTAATTCGAAACGGAGGGAG 57.478 47.619 0.00 0.00 0.00 4.30
67 68 3.007182 ACAAGTAATTCGAAACGGAGGGA 59.993 43.478 0.00 0.00 0.00 4.20
68 69 3.332034 ACAAGTAATTCGAAACGGAGGG 58.668 45.455 0.00 0.00 0.00 4.30
69 70 4.243270 AGACAAGTAATTCGAAACGGAGG 58.757 43.478 0.00 0.00 0.00 4.30
70 71 5.389516 CCAAGACAAGTAATTCGAAACGGAG 60.390 44.000 0.00 0.00 0.00 4.63
71 72 4.449743 CCAAGACAAGTAATTCGAAACGGA 59.550 41.667 0.00 0.00 0.00 4.69
72 73 4.449743 TCCAAGACAAGTAATTCGAAACGG 59.550 41.667 0.00 0.00 0.00 4.44
73 74 5.585500 TCCAAGACAAGTAATTCGAAACG 57.415 39.130 0.00 0.00 0.00 3.60
74 75 7.860872 ACAAATCCAAGACAAGTAATTCGAAAC 59.139 33.333 0.00 0.00 0.00 2.78
75 76 7.936584 ACAAATCCAAGACAAGTAATTCGAAA 58.063 30.769 0.00 0.00 0.00 3.46
76 77 7.444183 AGACAAATCCAAGACAAGTAATTCGAA 59.556 33.333 0.00 0.00 0.00 3.71
77 78 6.934645 AGACAAATCCAAGACAAGTAATTCGA 59.065 34.615 0.00 0.00 0.00 3.71
78 79 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
79 80 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
80 81 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
82 83 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
83 84 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
84 85 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
85 86 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
86 87 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
87 88 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
88 89 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
89 90 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
90 91 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
91 92 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
92 93 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
121 122 9.998106 ACGGATGTATCTAGCATTAAAATAAGT 57.002 29.630 0.00 0.00 0.00 2.24
139 140 9.788889 TCTTAGATTTGTCTAGATACGGATGTA 57.211 33.333 0.00 0.00 34.45 2.29
140 141 8.569641 GTCTTAGATTTGTCTAGATACGGATGT 58.430 37.037 0.00 0.00 0.00 3.06
141 142 8.568794 TGTCTTAGATTTGTCTAGATACGGATG 58.431 37.037 0.00 0.00 0.00 3.51
142 143 8.693120 TGTCTTAGATTTGTCTAGATACGGAT 57.307 34.615 0.00 0.00 0.00 4.18
143 144 8.515695 TTGTCTTAGATTTGTCTAGATACGGA 57.484 34.615 0.00 0.00 0.00 4.69
144 145 8.407064 ACTTGTCTTAGATTTGTCTAGATACGG 58.593 37.037 0.00 0.00 0.00 4.02
151 152 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
152 153 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
153 154 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
154 155 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
155 156 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
156 157 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
157 158 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
158 159 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
159 160 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
160 161 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
161 162 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
162 163 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
163 164 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
164 165 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
165 166 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
166 167 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
167 168 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
168 169 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
169 170 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
170 171 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
171 172 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
172 173 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
173 174 1.308069 CGTACTCCCTCCGTTCCGAA 61.308 60.000 0.00 0.00 0.00 4.30
174 175 1.746615 CGTACTCCCTCCGTTCCGA 60.747 63.158 0.00 0.00 0.00 4.55
175 176 2.042831 ACGTACTCCCTCCGTTCCG 61.043 63.158 0.00 0.00 0.00 4.30
176 177 1.509923 CACGTACTCCCTCCGTTCC 59.490 63.158 0.00 0.00 31.46 3.62
177 178 1.153881 GCACGTACTCCCTCCGTTC 60.154 63.158 0.00 0.00 31.46 3.95
178 179 2.968206 GCACGTACTCCCTCCGTT 59.032 61.111 0.00 0.00 31.46 4.44
179 180 2.803155 TACGCACGTACTCCCTCCGT 62.803 60.000 0.00 0.00 34.71 4.69
180 181 2.108514 TACGCACGTACTCCCTCCG 61.109 63.158 0.00 0.00 0.00 4.63
181 182 1.431036 GTACGCACGTACTCCCTCC 59.569 63.158 22.45 0.00 45.30 4.30
235 236 4.829968 TGCTACTACTACGAGTCTGTTCT 58.170 43.478 0.00 0.00 0.00 3.01
337 349 1.010935 CGCACACATCAGTCTCGCTT 61.011 55.000 0.00 0.00 0.00 4.68
344 356 3.043713 CCGCACGCACACATCAGT 61.044 61.111 0.00 0.00 0.00 3.41
422 438 1.065551 GGTTTTTCTCGTGCTGCTGTT 59.934 47.619 0.00 0.00 0.00 3.16
423 439 0.663153 GGTTTTTCTCGTGCTGCTGT 59.337 50.000 0.00 0.00 0.00 4.40
532 552 0.468029 CTCTCTCTCTCCCTCCCTGC 60.468 65.000 0.00 0.00 0.00 4.85
536 556 1.421646 CCTCTCTCTCTCTCTCCCTCC 59.578 61.905 0.00 0.00 0.00 4.30
537 557 1.421646 CCCTCTCTCTCTCTCTCCCTC 59.578 61.905 0.00 0.00 0.00 4.30
538 558 1.010793 TCCCTCTCTCTCTCTCTCCCT 59.989 57.143 0.00 0.00 0.00 4.20
539 559 1.421646 CTCCCTCTCTCTCTCTCTCCC 59.578 61.905 0.00 0.00 0.00 4.30
540 560 1.421646 CCTCCCTCTCTCTCTCTCTCC 59.578 61.905 0.00 0.00 0.00 3.71
546 566 2.600731 CGCCCTCCCTCTCTCTCT 59.399 66.667 0.00 0.00 0.00 3.10
603 627 3.210528 GAGATCGACCCCTCGCGT 61.211 66.667 5.77 0.00 39.96 6.01
809 1050 3.552911 AGGGGTGGGGAGGAAGGT 61.553 66.667 0.00 0.00 0.00 3.50
821 1062 1.293683 GGAGAGGAGAGGAGAGGGGT 61.294 65.000 0.00 0.00 0.00 4.95
833 1084 1.025113 CGCGTCTGTGTAGGAGAGGA 61.025 60.000 0.00 0.00 0.00 3.71
882 1133 1.923204 CGACTTGAATCCTCTCGCAAG 59.077 52.381 0.00 0.00 42.46 4.01
908 1159 3.328093 TATCTGCGCTGCCTTGCCA 62.328 57.895 9.73 0.00 0.00 4.92
909 1160 2.514592 TATCTGCGCTGCCTTGCC 60.515 61.111 9.73 0.00 0.00 4.52
910 1161 1.522355 TCTATCTGCGCTGCCTTGC 60.522 57.895 9.73 0.00 0.00 4.01
911 1162 0.460811 TGTCTATCTGCGCTGCCTTG 60.461 55.000 9.73 0.52 0.00 3.61
912 1163 0.250234 TTGTCTATCTGCGCTGCCTT 59.750 50.000 9.73 0.00 0.00 4.35
913 1164 0.179089 CTTGTCTATCTGCGCTGCCT 60.179 55.000 9.73 1.47 0.00 4.75
914 1165 0.179100 TCTTGTCTATCTGCGCTGCC 60.179 55.000 9.73 0.00 0.00 4.85
915 1166 1.863267 ATCTTGTCTATCTGCGCTGC 58.137 50.000 9.73 0.00 0.00 5.25
916 1167 4.235939 ACTATCTTGTCTATCTGCGCTG 57.764 45.455 9.73 8.88 0.00 5.18
917 1168 4.927978 AACTATCTTGTCTATCTGCGCT 57.072 40.909 9.73 0.00 0.00 5.92
918 1169 4.318404 GCAAACTATCTTGTCTATCTGCGC 60.318 45.833 0.00 0.00 0.00 6.09
919 1170 5.046529 AGCAAACTATCTTGTCTATCTGCG 58.953 41.667 0.00 0.00 0.00 5.18
920 1171 6.045318 TCAGCAAACTATCTTGTCTATCTGC 58.955 40.000 0.00 0.00 0.00 4.26
921 1172 8.659925 AATCAGCAAACTATCTTGTCTATCTG 57.340 34.615 0.00 0.00 0.00 2.90
944 1197 4.033709 TCTAGCTAGCTTGACCCAAGAAT 58.966 43.478 24.88 0.00 43.42 2.40
1003 1256 4.459089 GTGGACCTCCTCCTGCGC 62.459 72.222 0.00 0.00 40.26 6.09
1179 1432 1.376466 GCTGGTCATGGTGGTGTCT 59.624 57.895 0.00 0.00 0.00 3.41
1470 1730 1.002684 GGTATCCGCGGCTATCTATCG 60.003 57.143 23.51 0.00 0.00 2.92
1536 1799 2.866010 TATGCATGTGTACGCGCGC 61.866 57.895 32.58 23.91 0.00 6.86
1537 1800 1.084290 GTATGCATGTGTACGCGCG 60.084 57.895 30.96 30.96 0.00 6.86
1552 1818 6.071952 ACCAGATTTGTCGATTTTGCTTGTAT 60.072 34.615 0.00 0.00 0.00 2.29
1563 1829 7.444183 TCAAGAAAGTAAACCAGATTTGTCGAT 59.556 33.333 0.00 0.00 0.00 3.59
1564 1830 6.764085 TCAAGAAAGTAAACCAGATTTGTCGA 59.236 34.615 0.00 0.00 0.00 4.20
1566 1832 8.787852 AGATCAAGAAAGTAAACCAGATTTGTC 58.212 33.333 0.00 0.00 0.00 3.18
1567 1833 8.697507 AGATCAAGAAAGTAAACCAGATTTGT 57.302 30.769 0.00 0.00 0.00 2.83
1618 1889 7.975616 CCGGAAATACTTGTCATCAAAATGAAT 59.024 33.333 0.00 0.00 43.42 2.57
1619 1890 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
1620 1891 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
1621 1892 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
1622 1893 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1623 1894 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1624 1895 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1625 1896 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1626 1897 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1627 1898 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1628 1899 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1629 1900 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1630 1901 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1631 1902 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1632 1903 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1633 1904 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1634 1905 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1635 1906 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1636 1907 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1637 1908 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1638 1909 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
1639 1910 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
1640 1911 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
1641 1912 1.152819 TCATACTCCCTCCGTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
1642 1913 1.797211 GCTCATACTCCCTCCGTCCG 61.797 65.000 0.00 0.00 0.00 4.79
1643 1914 0.468400 AGCTCATACTCCCTCCGTCC 60.468 60.000 0.00 0.00 0.00 4.79
1644 1915 1.881324 GTAGCTCATACTCCCTCCGTC 59.119 57.143 0.00 0.00 0.00 4.79
1645 1916 1.495574 AGTAGCTCATACTCCCTCCGT 59.504 52.381 0.00 0.00 40.99 4.69
1646 1917 1.883275 CAGTAGCTCATACTCCCTCCG 59.117 57.143 0.00 0.00 43.13 4.63
1647 1918 3.231207 TCAGTAGCTCATACTCCCTCC 57.769 52.381 0.00 0.00 43.13 4.30
1648 1919 4.830046 TGATTCAGTAGCTCATACTCCCTC 59.170 45.833 0.00 0.00 43.13 4.30
1649 1920 4.809193 TGATTCAGTAGCTCATACTCCCT 58.191 43.478 0.00 0.00 43.13 4.20
1650 1921 5.537300 TTGATTCAGTAGCTCATACTCCC 57.463 43.478 0.00 0.00 43.13 4.30
1651 1922 7.849804 TTTTTGATTCAGTAGCTCATACTCC 57.150 36.000 0.00 0.00 43.13 3.85
1871 2151 1.284785 AGTCAGCTCTAGCAGGAGACT 59.715 52.381 4.54 8.71 45.16 3.24
1948 2228 3.319405 ACACAAAAATGATTGCCCGTGTA 59.681 39.130 0.00 0.00 33.52 2.90
1974 2254 2.680312 TGAGATAGGAGTGCAAGTGC 57.320 50.000 0.00 0.00 42.50 4.40
1975 2255 5.181009 TGAATTGAGATAGGAGTGCAAGTG 58.819 41.667 0.00 0.00 0.00 3.16
1976 2256 5.426689 TGAATTGAGATAGGAGTGCAAGT 57.573 39.130 0.00 0.00 0.00 3.16
1977 2257 6.939132 AATGAATTGAGATAGGAGTGCAAG 57.061 37.500 0.00 0.00 0.00 4.01
2003 2283 2.917701 TGCATGCATGGACGTAAAAG 57.082 45.000 27.34 0.00 0.00 2.27
2061 2341 0.179234 TCACCGCCAGAACTGAAACA 59.821 50.000 3.19 0.00 0.00 2.83
2075 2355 6.128742 ACGTTAGCTATACAAAAAGTTCACCG 60.129 38.462 0.00 0.00 0.00 4.94
2091 2371 1.135527 CACGGGATCCAACGTTAGCTA 59.864 52.381 15.23 0.00 42.04 3.32
2093 2374 0.390735 ACACGGGATCCAACGTTAGC 60.391 55.000 15.23 0.00 42.04 3.09
2323 2607 3.133464 GCCGGCAGCTGCATGTAA 61.133 61.111 37.63 0.00 44.36 2.41
2491 2775 4.254672 TATGTACGCGCGGTCCGG 62.255 66.667 35.22 5.29 37.44 5.14
2493 2777 2.102749 TGTATGTACGCGCGGTCC 59.897 61.111 35.22 20.79 0.00 4.46
2530 2821 2.584064 CTATGGCGGTGGTGCTGA 59.416 61.111 0.00 0.00 34.52 4.26
2556 2855 0.806492 GCGGCCACTGCTACTTACTC 60.806 60.000 2.24 0.00 37.74 2.59
2646 2954 4.591321 AATGGCAAAAGTAGGAGGATCA 57.409 40.909 0.00 0.00 36.25 2.92
2762 3076 1.263356 ACAAAGCTACTACGGCTGGA 58.737 50.000 0.00 0.00 40.19 3.86
2763 3077 2.810650 CTACAAAGCTACTACGGCTGG 58.189 52.381 0.00 0.00 40.19 4.85
2764 3078 2.194271 GCTACAAAGCTACTACGGCTG 58.806 52.381 0.00 0.00 45.85 4.85
2765 3079 2.580966 GCTACAAAGCTACTACGGCT 57.419 50.000 0.00 0.00 45.85 5.52
2778 3092 2.353889 CCGCTTCGAGTACTAGCTACAA 59.646 50.000 12.99 0.00 32.80 2.41
2779 3093 1.938577 CCGCTTCGAGTACTAGCTACA 59.061 52.381 12.99 0.00 32.80 2.74
2823 3140 0.321298 AGGTCCACGGTTACATGCAC 60.321 55.000 0.00 0.00 0.00 4.57
2983 3307 0.179140 CGACAGCAAGAGCCTCTCTC 60.179 60.000 0.00 0.00 40.28 3.20
2984 3308 1.603236 CCGACAGCAAGAGCCTCTCT 61.603 60.000 0.00 0.00 43.37 3.10
2985 3309 1.153667 CCGACAGCAAGAGCCTCTC 60.154 63.158 0.00 0.00 43.56 3.20
2986 3310 2.654079 CCCGACAGCAAGAGCCTCT 61.654 63.158 0.00 0.00 43.56 3.69
2987 3311 2.125350 CCCGACAGCAAGAGCCTC 60.125 66.667 0.00 0.00 43.56 4.70
2988 3312 2.925170 ACCCGACAGCAAGAGCCT 60.925 61.111 0.00 0.00 43.56 4.58
2989 3313 2.743928 CACCCGACAGCAAGAGCC 60.744 66.667 0.00 0.00 43.56 4.70
2990 3314 3.426568 GCACCCGACAGCAAGAGC 61.427 66.667 0.00 0.00 42.56 4.09
2991 3315 2.486636 TACGCACCCGACAGCAAGAG 62.487 60.000 0.00 0.00 38.29 2.85
2992 3316 2.566570 TACGCACCCGACAGCAAGA 61.567 57.895 0.00 0.00 38.29 3.02
2993 3317 2.048597 TACGCACCCGACAGCAAG 60.049 61.111 0.00 0.00 38.29 4.01
2994 3318 2.356553 GTACGCACCCGACAGCAA 60.357 61.111 0.00 0.00 38.29 3.91
2995 3319 4.710695 CGTACGCACCCGACAGCA 62.711 66.667 0.52 0.00 38.29 4.41
2996 3320 4.712425 ACGTACGCACCCGACAGC 62.712 66.667 16.72 0.00 38.29 4.40
3073 3397 4.089408 AGTAAAGTTTAAGGCCCGACAA 57.911 40.909 0.00 0.00 0.00 3.18
3199 3523 3.205338 GGGTTACAACTTACAACGGTGT 58.795 45.455 12.53 12.53 42.09 4.16
3259 3583 5.635280 CACGAGCTTCTTTCTAGTCAAATCA 59.365 40.000 0.00 0.00 0.00 2.57
3282 3606 5.529430 CGTCATTAATTACCAGGCAATACCA 59.471 40.000 0.00 0.00 43.14 3.25
3301 3625 0.606604 AGGCAGAAACCGTACGTCAT 59.393 50.000 15.21 0.00 33.69 3.06
3308 3632 1.407437 GGATGATGAGGCAGAAACCGT 60.407 52.381 0.00 0.00 33.69 4.83
3325 3649 4.836825 ACTGAAAACGACATCTGATGGAT 58.163 39.130 20.83 1.51 34.51 3.41
3335 3659 6.537301 ACTCAACAATCTAACTGAAAACGACA 59.463 34.615 0.00 0.00 0.00 4.35
3353 3677 8.654485 TCTGGTTACCTAGTAATTACTCAACA 57.346 34.615 21.25 9.57 37.73 3.33
3382 3706 6.774656 AGAAGATCAAGAGTCATGGTGTTTTT 59.225 34.615 0.00 0.00 0.00 1.94
3383 3707 6.206243 CAGAAGATCAAGAGTCATGGTGTTTT 59.794 38.462 0.00 0.00 0.00 2.43
3384 3708 5.704515 CAGAAGATCAAGAGTCATGGTGTTT 59.295 40.000 0.00 0.00 0.00 2.83
3385 3709 5.243981 CAGAAGATCAAGAGTCATGGTGTT 58.756 41.667 0.00 0.00 0.00 3.32
3386 3710 4.829968 CAGAAGATCAAGAGTCATGGTGT 58.170 43.478 0.00 0.00 0.00 4.16
3387 3711 3.622163 GCAGAAGATCAAGAGTCATGGTG 59.378 47.826 0.00 0.00 0.00 4.17
3388 3712 3.370315 GGCAGAAGATCAAGAGTCATGGT 60.370 47.826 0.00 0.00 0.00 3.55
3389 3713 3.118334 AGGCAGAAGATCAAGAGTCATGG 60.118 47.826 0.00 0.00 0.00 3.66
3390 3714 4.139859 AGGCAGAAGATCAAGAGTCATG 57.860 45.455 0.00 0.00 0.00 3.07
3391 3715 4.224594 TCAAGGCAGAAGATCAAGAGTCAT 59.775 41.667 0.00 0.00 0.00 3.06
3392 3716 3.580022 TCAAGGCAGAAGATCAAGAGTCA 59.420 43.478 0.00 0.00 0.00 3.41
3393 3717 4.199432 TCAAGGCAGAAGATCAAGAGTC 57.801 45.455 0.00 0.00 0.00 3.36
3394 3718 4.840716 ATCAAGGCAGAAGATCAAGAGT 57.159 40.909 0.00 0.00 0.00 3.24
3395 3719 5.881443 AGAAATCAAGGCAGAAGATCAAGAG 59.119 40.000 0.00 0.00 0.00 2.85
3396 3720 5.813383 AGAAATCAAGGCAGAAGATCAAGA 58.187 37.500 0.00 0.00 0.00 3.02
3397 3721 5.881443 AGAGAAATCAAGGCAGAAGATCAAG 59.119 40.000 0.00 0.00 0.00 3.02
3398 3722 5.813383 AGAGAAATCAAGGCAGAAGATCAA 58.187 37.500 0.00 0.00 0.00 2.57
3399 3723 5.432680 AGAGAAATCAAGGCAGAAGATCA 57.567 39.130 0.00 0.00 0.00 2.92
3400 3724 6.073112 GCATAGAGAAATCAAGGCAGAAGATC 60.073 42.308 0.00 0.00 0.00 2.75
3401 3725 5.764192 GCATAGAGAAATCAAGGCAGAAGAT 59.236 40.000 0.00 0.00 0.00 2.40
3402 3726 5.121811 GCATAGAGAAATCAAGGCAGAAGA 58.878 41.667 0.00 0.00 0.00 2.87
3403 3727 4.880120 TGCATAGAGAAATCAAGGCAGAAG 59.120 41.667 0.00 0.00 0.00 2.85
3404 3728 4.847198 TGCATAGAGAAATCAAGGCAGAA 58.153 39.130 0.00 0.00 0.00 3.02
3405 3729 4.492494 TGCATAGAGAAATCAAGGCAGA 57.508 40.909 0.00 0.00 0.00 4.26
3406 3730 6.127980 CCATATGCATAGAGAAATCAAGGCAG 60.128 42.308 12.79 0.00 33.09 4.85
3407 3731 5.708697 CCATATGCATAGAGAAATCAAGGCA 59.291 40.000 12.79 0.00 0.00 4.75
3408 3732 5.942236 TCCATATGCATAGAGAAATCAAGGC 59.058 40.000 12.79 0.00 0.00 4.35
3409 3733 8.459635 CAATCCATATGCATAGAGAAATCAAGG 58.540 37.037 12.79 0.00 0.00 3.61
3410 3734 9.227777 TCAATCCATATGCATAGAGAAATCAAG 57.772 33.333 12.79 1.08 0.00 3.02
3411 3735 9.227777 CTCAATCCATATGCATAGAGAAATCAA 57.772 33.333 12.79 0.00 0.00 2.57
3412 3736 7.336176 GCTCAATCCATATGCATAGAGAAATCA 59.664 37.037 17.88 0.00 0.00 2.57
3413 3737 7.465647 CGCTCAATCCATATGCATAGAGAAATC 60.466 40.741 17.88 4.19 0.00 2.17
3414 3738 6.315642 CGCTCAATCCATATGCATAGAGAAAT 59.684 38.462 17.88 6.96 0.00 2.17
3415 3739 5.640783 CGCTCAATCCATATGCATAGAGAAA 59.359 40.000 17.88 5.11 0.00 2.52
3416 3740 5.047092 TCGCTCAATCCATATGCATAGAGAA 60.047 40.000 17.88 6.33 0.00 2.87
3417 3741 4.463891 TCGCTCAATCCATATGCATAGAGA 59.536 41.667 17.88 14.22 0.00 3.10
3418 3742 4.752146 TCGCTCAATCCATATGCATAGAG 58.248 43.478 12.79 12.31 0.00 2.43
3419 3743 4.752146 CTCGCTCAATCCATATGCATAGA 58.248 43.478 12.79 5.36 0.00 1.98
3420 3744 3.309138 GCTCGCTCAATCCATATGCATAG 59.691 47.826 12.79 4.59 0.00 2.23
3421 3745 3.055602 AGCTCGCTCAATCCATATGCATA 60.056 43.478 9.27 9.27 0.00 3.14
3422 3746 2.082231 GCTCGCTCAATCCATATGCAT 58.918 47.619 3.79 3.79 0.00 3.96
3423 3747 1.071228 AGCTCGCTCAATCCATATGCA 59.929 47.619 0.00 0.00 0.00 3.96
3424 3748 1.731160 GAGCTCGCTCAATCCATATGC 59.269 52.381 13.69 0.00 42.31 3.14
3425 3749 1.991264 CGAGCTCGCTCAATCCATATG 59.009 52.381 25.07 0.00 42.86 1.78
3426 3750 2.360553 CGAGCTCGCTCAATCCATAT 57.639 50.000 25.07 0.00 42.86 1.78
3427 3751 3.873805 CGAGCTCGCTCAATCCATA 57.126 52.632 25.07 0.00 42.86 2.74
3428 3752 4.746361 CGAGCTCGCTCAATCCAT 57.254 55.556 25.07 0.00 42.86 3.41
3438 3762 0.664466 TGTCACTTCTTGCGAGCTCG 60.664 55.000 31.37 31.37 43.27 5.03
3439 3763 0.787183 GTGTCACTTCTTGCGAGCTC 59.213 55.000 2.73 2.73 0.00 4.09
3440 3764 0.941463 CGTGTCACTTCTTGCGAGCT 60.941 55.000 0.65 0.00 0.00 4.09
3441 3765 1.215655 ACGTGTCACTTCTTGCGAGC 61.216 55.000 0.65 0.00 0.00 5.03
3442 3766 0.778815 GACGTGTCACTTCTTGCGAG 59.221 55.000 0.00 0.00 0.00 5.03
3443 3767 0.101579 TGACGTGTCACTTCTTGCGA 59.898 50.000 10.49 0.00 34.14 5.10
3444 3768 0.927537 TTGACGTGTCACTTCTTGCG 59.072 50.000 10.49 0.00 39.66 4.85
3445 3769 2.286418 CCTTTGACGTGTCACTTCTTGC 60.286 50.000 10.49 0.00 39.66 4.01
3446 3770 2.287915 CCCTTTGACGTGTCACTTCTTG 59.712 50.000 10.49 1.81 39.66 3.02
3447 3771 2.169769 TCCCTTTGACGTGTCACTTCTT 59.830 45.455 10.49 0.00 39.66 2.52
3448 3772 1.760613 TCCCTTTGACGTGTCACTTCT 59.239 47.619 10.49 0.00 39.66 2.85
3449 3773 2.234300 TCCCTTTGACGTGTCACTTC 57.766 50.000 1.41 2.56 39.66 3.01
3450 3774 2.702592 TTCCCTTTGACGTGTCACTT 57.297 45.000 1.41 0.00 39.66 3.16
3451 3775 2.561569 CTTTCCCTTTGACGTGTCACT 58.438 47.619 1.41 0.00 39.66 3.41
3452 3776 1.602377 CCTTTCCCTTTGACGTGTCAC 59.398 52.381 1.41 0.00 39.66 3.67
3453 3777 1.476110 CCCTTTCCCTTTGACGTGTCA 60.476 52.381 0.00 0.00 37.91 3.58
3454 3778 1.235724 CCCTTTCCCTTTGACGTGTC 58.764 55.000 0.00 0.00 0.00 3.67
3455 3779 0.549469 ACCCTTTCCCTTTGACGTGT 59.451 50.000 0.00 0.00 0.00 4.49
3456 3780 1.687563 AACCCTTTCCCTTTGACGTG 58.312 50.000 0.00 0.00 0.00 4.49
3457 3781 2.028876 CAAACCCTTTCCCTTTGACGT 58.971 47.619 0.00 0.00 0.00 4.34
3458 3782 1.339929 CCAAACCCTTTCCCTTTGACG 59.660 52.381 0.00 0.00 0.00 4.35
3459 3783 2.394632 ACCAAACCCTTTCCCTTTGAC 58.605 47.619 0.00 0.00 0.00 3.18
3460 3784 2.858787 ACCAAACCCTTTCCCTTTGA 57.141 45.000 0.00 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.