Multiple sequence alignment - TraesCS4B01G234900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G234900 chr4B 100.000 4748 0 0 1426 6173 489675377 489670630 0.000000e+00 8769.0
1 TraesCS4B01G234900 chr4B 100.000 1049 0 0 1 1049 489676802 489675754 0.000000e+00 1938.0
2 TraesCS4B01G234900 chr4B 87.604 839 94 8 1 836 393163985 393164816 0.000000e+00 965.0
3 TraesCS4B01G234900 chr4B 87.146 848 85 15 3 830 148132089 148132932 0.000000e+00 941.0
4 TraesCS4B01G234900 chr4B 96.124 129 4 1 3152 3280 489673463 489673336 6.270000e-50 209.0
5 TraesCS4B01G234900 chr4B 96.124 129 4 1 3340 3467 489673651 489673523 6.270000e-50 209.0
6 TraesCS4B01G234900 chr4B 90.909 55 4 1 6116 6169 651511639 651511585 8.580000e-09 73.1
7 TraesCS4B01G234900 chr4B 100.000 37 0 0 3073 3109 489673410 489673374 1.110000e-07 69.4
8 TraesCS4B01G234900 chr4B 100.000 37 0 0 3073 3109 489673597 489673561 1.110000e-07 69.4
9 TraesCS4B01G234900 chr4B 100.000 37 0 0 3393 3429 489673730 489673694 1.110000e-07 69.4
10 TraesCS4B01G234900 chr4B 100.000 37 0 0 3206 3242 489673730 489673694 1.110000e-07 69.4
11 TraesCS4B01G234900 chr4B 75.862 145 25 8 3113 3252 489673551 489673690 1.440000e-06 65.8
12 TraesCS4B01G234900 chr4B 100.000 32 0 0 3113 3144 489673364 489673395 6.680000e-05 60.2
13 TraesCS4B01G234900 chr4B 94.872 39 0 1 3403 3439 489673652 489673690 6.680000e-05 60.2
14 TraesCS4B01G234900 chr4A 91.987 2808 169 31 3355 6128 55397162 55394377 0.000000e+00 3888.0
15 TraesCS4B01G234900 chr4A 92.651 1075 64 10 2005 3077 55398257 55397196 0.000000e+00 1533.0
16 TraesCS4B01G234900 chr4A 96.316 570 18 3 1430 1997 55398803 55398235 0.000000e+00 933.0
17 TraesCS4B01G234900 chr4A 95.789 190 7 1 861 1049 55399018 55398829 7.770000e-79 305.0
18 TraesCS4B01G234900 chr4A 97.196 107 3 0 3168 3274 55397162 55397056 1.370000e-41 182.0
19 TraesCS4B01G234900 chr4A 93.056 72 3 2 6004 6073 717817223 717817294 3.040000e-18 104.0
20 TraesCS4B01G234900 chr4A 97.297 37 1 0 3073 3109 55397124 55397088 5.170000e-06 63.9
21 TraesCS4B01G234900 chr4A 100.000 30 0 0 3115 3144 55397080 55397109 8.640000e-04 56.5
22 TraesCS4B01G234900 chr4A 100.000 28 0 0 6140 6167 55394377 55394350 1.100000e-02 52.8
23 TraesCS4B01G234900 chr4A 91.892 37 3 0 6130 6166 75437817 75437853 1.100000e-02 52.8
24 TraesCS4B01G234900 chr4D 92.107 1457 67 21 4702 6138 397691996 397690568 0.000000e+00 2010.0
25 TraesCS4B01G234900 chr4D 94.453 1298 59 7 3329 4623 397693281 397691994 0.000000e+00 1986.0
26 TraesCS4B01G234900 chr4D 88.784 847 78 10 1 832 17233913 17233069 0.000000e+00 1022.0
27 TraesCS4B01G234900 chr4D 95.326 599 19 3 2479 3077 397693898 397693309 0.000000e+00 942.0
28 TraesCS4B01G234900 chr4D 95.583 566 24 1 1430 1995 397695822 397695258 0.000000e+00 905.0
29 TraesCS4B01G234900 chr4D 88.842 708 68 4 135 831 39302923 39302216 0.000000e+00 859.0
30 TraesCS4B01G234900 chr4D 91.811 403 33 0 2005 2407 397695280 397694878 4.180000e-156 562.0
31 TraesCS4B01G234900 chr4D 92.241 232 11 3 825 1049 397696079 397695848 7.720000e-84 322.0
32 TraesCS4B01G234900 chr4D 92.623 122 4 3 3152 3273 397693270 397693154 2.960000e-38 171.0
33 TraesCS4B01G234900 chr4D 100.000 36 0 0 6138 6173 397684367 397684332 3.990000e-07 67.6
34 TraesCS4B01G234900 chr4D 100.000 29 0 0 5899 5927 360449789 360449761 3.000000e-03 54.7
35 TraesCS4B01G234900 chr3D 89.965 847 69 10 1 831 547515096 547514250 0.000000e+00 1079.0
36 TraesCS4B01G234900 chr3D 89.474 798 69 9 1 785 113465798 113465003 0.000000e+00 994.0
37 TraesCS4B01G234900 chr3D 94.444 36 0 1 5892 5927 300966189 300966222 3.000000e-03 54.7
38 TraesCS4B01G234900 chr1B 89.964 837 73 9 1 832 669787840 669787010 0.000000e+00 1070.0
39 TraesCS4B01G234900 chr1B 89.130 46 3 2 5883 5927 408217121 408217165 8.640000e-04 56.5
40 TraesCS4B01G234900 chr5D 89.536 841 74 8 4 831 430918802 430917963 0.000000e+00 1053.0
41 TraesCS4B01G234900 chr5D 89.087 843 80 7 1 831 353646285 353645443 0.000000e+00 1037.0
42 TraesCS4B01G234900 chr5D 87.825 846 84 14 1 830 231636394 231635552 0.000000e+00 974.0
43 TraesCS4B01G234900 chr5D 84.191 272 33 9 2060 2327 509436780 509437045 7.940000e-64 255.0
44 TraesCS4B01G234900 chr5D 80.435 230 44 1 2081 2309 563401743 563401514 2.290000e-39 174.0
45 TraesCS4B01G234900 chr5D 90.278 72 5 2 6004 6073 344989155 344989084 6.590000e-15 93.5
46 TraesCS4B01G234900 chr5D 100.000 29 0 0 5899 5927 542356977 542357005 3.000000e-03 54.7
47 TraesCS4B01G234900 chr2A 88.876 845 77 12 1 830 48849889 48850731 0.000000e+00 1024.0
48 TraesCS4B01G234900 chr2A 84.015 269 36 6 2058 2323 642219236 642218972 1.030000e-62 252.0
49 TraesCS4B01G234900 chr2A 87.356 87 9 2 6004 6088 564613512 564613426 1.420000e-16 99.0
50 TraesCS4B01G234900 chr2A 89.474 76 6 2 6004 6077 179820883 179820958 1.830000e-15 95.3
51 TraesCS4B01G234900 chr7D 88.507 844 82 11 1 831 152135941 152135100 0.000000e+00 1007.0
52 TraesCS4B01G234900 chr7D 91.358 81 4 3 6004 6082 329100478 329100557 2.350000e-19 108.0
53 TraesCS4B01G234900 chr7D 90.909 77 5 2 6002 6076 497321334 497321258 1.090000e-17 102.0
54 TraesCS4B01G234900 chr7D 90.000 80 5 3 6004 6081 561805936 561806014 3.940000e-17 100.0
55 TraesCS4B01G234900 chr2D 88.534 846 77 12 1 831 9608784 9607944 0.000000e+00 1007.0
56 TraesCS4B01G234900 chr2D 84.701 268 37 4 2058 2323 497919526 497919261 1.320000e-66 265.0
57 TraesCS4B01G234900 chr2D 84.861 251 34 4 2074 2323 15127841 15127594 3.690000e-62 250.0
58 TraesCS4B01G234900 chr7B 87.024 840 97 10 1 831 637347181 637348017 0.000000e+00 937.0
59 TraesCS4B01G234900 chr7B 100.000 31 0 0 6129 6159 669215524 669215494 2.400000e-04 58.4
60 TraesCS4B01G234900 chr7B 100.000 31 0 0 6129 6159 669282576 669282546 2.400000e-04 58.4
61 TraesCS4B01G234900 chr5B 84.270 267 34 7 2060 2323 639971543 639971804 2.860000e-63 254.0
62 TraesCS4B01G234900 chr5A 84.861 251 32 6 2074 2323 454527022 454526777 1.330000e-61 248.0
63 TraesCS4B01G234900 chr5A 97.143 35 1 0 6130 6164 11262301 11262335 6.680000e-05 60.2
64 TraesCS4B01G234900 chr6B 87.805 82 6 3 5994 6073 32716500 32716579 6.590000e-15 93.5
65 TraesCS4B01G234900 chr3A 87.654 81 6 4 6002 6080 732874751 732874673 2.370000e-14 91.6
66 TraesCS4B01G234900 chr6D 92.683 41 2 1 5940 5980 427126520 427126481 2.400000e-04 58.4
67 TraesCS4B01G234900 chr6D 100.000 29 0 0 5899 5927 401308263 401308291 3.000000e-03 54.7
68 TraesCS4B01G234900 chr7A 100.000 30 0 0 5899 5928 115859578 115859549 8.640000e-04 56.5
69 TraesCS4B01G234900 chr2B 100.000 30 0 0 5898 5927 425355086 425355057 8.640000e-04 56.5
70 TraesCS4B01G234900 chr1A 100.000 29 0 0 5899 5927 398057999 398058027 3.000000e-03 54.7
71 TraesCS4B01G234900 chr1A 88.636 44 4 1 5885 5928 109325877 109325919 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G234900 chr4B 489670630 489676802 6172 True 1425.325000 8769 99.031000 1 6173 8 chr4B.!!$R2 6172
1 TraesCS4B01G234900 chr4B 393163985 393164816 831 False 965.000000 965 87.604000 1 836 1 chr4B.!!$F2 835
2 TraesCS4B01G234900 chr4B 148132089 148132932 843 False 941.000000 941 87.146000 3 830 1 chr4B.!!$F1 827
3 TraesCS4B01G234900 chr4A 55394350 55399018 4668 True 993.957143 3888 95.890857 861 6167 7 chr4A.!!$R1 5306
4 TraesCS4B01G234900 chr4D 17233069 17233913 844 True 1022.000000 1022 88.784000 1 832 1 chr4D.!!$R1 831
5 TraesCS4B01G234900 chr4D 397690568 397696079 5511 True 985.428571 2010 93.449143 825 6138 7 chr4D.!!$R5 5313
6 TraesCS4B01G234900 chr4D 39302216 39302923 707 True 859.000000 859 88.842000 135 831 1 chr4D.!!$R2 696
7 TraesCS4B01G234900 chr3D 547514250 547515096 846 True 1079.000000 1079 89.965000 1 831 1 chr3D.!!$R2 830
8 TraesCS4B01G234900 chr3D 113465003 113465798 795 True 994.000000 994 89.474000 1 785 1 chr3D.!!$R1 784
9 TraesCS4B01G234900 chr1B 669787010 669787840 830 True 1070.000000 1070 89.964000 1 832 1 chr1B.!!$R1 831
10 TraesCS4B01G234900 chr5D 430917963 430918802 839 True 1053.000000 1053 89.536000 4 831 1 chr5D.!!$R4 827
11 TraesCS4B01G234900 chr5D 353645443 353646285 842 True 1037.000000 1037 89.087000 1 831 1 chr5D.!!$R3 830
12 TraesCS4B01G234900 chr5D 231635552 231636394 842 True 974.000000 974 87.825000 1 830 1 chr5D.!!$R1 829
13 TraesCS4B01G234900 chr2A 48849889 48850731 842 False 1024.000000 1024 88.876000 1 830 1 chr2A.!!$F1 829
14 TraesCS4B01G234900 chr7D 152135100 152135941 841 True 1007.000000 1007 88.507000 1 831 1 chr7D.!!$R1 830
15 TraesCS4B01G234900 chr2D 9607944 9608784 840 True 1007.000000 1007 88.534000 1 831 1 chr2D.!!$R1 830
16 TraesCS4B01G234900 chr7B 637347181 637348017 836 False 937.000000 937 87.024000 1 831 1 chr7B.!!$F1 830

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
609 631 0.039527 GATTTTTCAGCAACGCGGGT 60.040 50.0 12.47 0.0 0.00 5.28 F
708 756 0.396811 CTCAGACGTTTTCCCTGGGT 59.603 55.0 13.56 0.0 0.00 4.51 F
1474 1532 0.528017 TGTGCGTTTGCTTTGGTTGA 59.472 45.0 0.00 0.0 43.34 3.18 F
1999 2061 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
2009 2071 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
2015 2077 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.00 0.0 0.00 3.82 F
3068 4049 1.459450 GCCAAAGGAGTCCGCATAAA 58.541 50.0 2.76 0.0 0.00 1.40 F
4290 5275 0.110486 AACCGATCCAGTGGTTTGCT 59.890 50.0 9.54 0.0 46.04 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1869 1927 0.037232 GCAAACTCCACTCCTAGCGT 60.037 55.000 0.00 0.0 0.00 5.07 R
1984 2046 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.0 0.00 3.72 R
3318 4299 1.003580 GGTCCAAGCAATCAGGAGTGA 59.996 52.381 0.28 0.0 37.02 3.41 R
3320 4301 1.067295 TGGTCCAAGCAATCAGGAGT 58.933 50.000 0.00 0.0 30.78 3.85 R
3604 4588 1.714794 AAGCATGCGACACAGAGTAC 58.285 50.000 13.01 0.0 0.00 2.73 R
3787 4771 2.625906 CGCCGACACACAACAGTG 59.374 61.111 0.00 0.0 44.93 3.66 R
4803 5788 0.326264 CTAAACCAGGCAGGAGCACT 59.674 55.000 1.67 0.0 44.61 4.40 R
5518 6514 1.064758 TCATAGCCCCAATTCGCAACT 60.065 47.619 0.00 0.0 0.00 3.16 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 276 2.464782 TGAGCTCACAGATCAGACCAT 58.535 47.619 13.74 0.00 35.46 3.55
270 286 6.070021 TCACAGATCAGACCATTAATCAACCT 60.070 38.462 0.00 0.00 0.00 3.50
332 348 5.419471 GCTAGAAGTAACAGAGAGAAAGGGA 59.581 44.000 0.00 0.00 0.00 4.20
356 372 0.615331 GAACTCACAGAGGCCATGGA 59.385 55.000 18.40 2.47 33.35 3.41
384 403 2.926242 GGACAAGGGGGACGGTCA 60.926 66.667 10.76 0.00 32.22 4.02
447 466 0.673985 CCTGCCGACCGATGAAGATA 59.326 55.000 0.00 0.00 0.00 1.98
451 470 0.311165 CCGACCGATGAAGATACGCT 59.689 55.000 0.00 0.00 0.00 5.07
501 520 0.968901 TAGCGGGAAAGCTCGAAGGA 60.969 55.000 0.00 0.00 45.67 3.36
584 606 1.442148 GAGGCGAGCCGTAATCCTT 59.558 57.895 8.63 0.00 41.95 3.36
598 620 4.094294 CGTAATCCTTCCGCTGATTTTTCA 59.906 41.667 0.00 0.00 33.46 2.69
609 631 0.039527 GATTTTTCAGCAACGCGGGT 60.040 50.000 12.47 0.00 0.00 5.28
613 635 2.652382 TTTCAGCAACGCGGGTGAGA 62.652 55.000 12.47 7.39 45.03 3.27
691 729 3.749735 GAGCCAGTCTCGCGAGCTC 62.750 68.421 30.97 27.69 42.74 4.09
694 742 2.402572 CCAGTCTCGCGAGCTCAGA 61.403 63.158 30.97 11.32 0.00 3.27
700 748 1.004277 CTCGCGAGCTCAGACGTTTT 61.004 55.000 25.07 0.00 0.00 2.43
708 756 0.396811 CTCAGACGTTTTCCCTGGGT 59.603 55.000 13.56 0.00 0.00 4.51
751 801 2.562912 GTGCCATGAAGCCACACG 59.437 61.111 0.00 0.00 0.00 4.49
814 864 1.142936 TCAGGCTGGGTCATATGCAT 58.857 50.000 15.73 3.79 0.00 3.96
837 887 3.761897 CAACCAAACACTCCCCTATTGA 58.238 45.455 0.00 0.00 0.00 2.57
839 889 4.034285 ACCAAACACTCCCCTATTGAAG 57.966 45.455 0.00 0.00 0.00 3.02
915 969 4.700268 ATCATAAAGCGCACACAAATCA 57.300 36.364 11.47 0.00 0.00 2.57
1036 1094 3.070018 GCTCTCAGAGTAAGCAAAGCAA 58.930 45.455 2.93 0.00 36.06 3.91
1039 1097 3.071602 TCTCAGAGTAAGCAAAGCAACCT 59.928 43.478 0.00 0.00 0.00 3.50
1040 1098 3.403038 TCAGAGTAAGCAAAGCAACCTC 58.597 45.455 0.00 0.00 0.00 3.85
1474 1532 0.528017 TGTGCGTTTGCTTTGGTTGA 59.472 45.000 0.00 0.00 43.34 3.18
1643 1701 9.078990 TCCTCTTTCTTTTCTTATTTTTCTCCC 57.921 33.333 0.00 0.00 0.00 4.30
1644 1702 8.023706 CCTCTTTCTTTTCTTATTTTTCTCCCG 58.976 37.037 0.00 0.00 0.00 5.14
1798 1856 6.109156 TGTCCTTGTAGATTTGTTCTAGCA 57.891 37.500 0.00 0.00 37.62 3.49
1921 1979 8.560374 GGAGTGAGTGAGTTTATTATTTATGGC 58.440 37.037 0.00 0.00 0.00 4.40
1979 2041 6.096673 AGGTTTGTCTTTTCTTTGTGTGTT 57.903 33.333 0.00 0.00 0.00 3.32
1984 2046 5.837437 TGTCTTTTCTTTGTGTGTTTGTGT 58.163 33.333 0.00 0.00 0.00 3.72
1985 2047 5.689514 TGTCTTTTCTTTGTGTGTTTGTGTG 59.310 36.000 0.00 0.00 0.00 3.82
1986 2048 5.689961 GTCTTTTCTTTGTGTGTTTGTGTGT 59.310 36.000 0.00 0.00 0.00 3.72
1987 2049 5.689514 TCTTTTCTTTGTGTGTTTGTGTGTG 59.310 36.000 0.00 0.00 0.00 3.82
1988 2050 4.576216 TTCTTTGTGTGTTTGTGTGTGT 57.424 36.364 0.00 0.00 0.00 3.72
1989 2051 3.894920 TCTTTGTGTGTTTGTGTGTGTG 58.105 40.909 0.00 0.00 0.00 3.82
1990 2052 3.316588 TCTTTGTGTGTTTGTGTGTGTGT 59.683 39.130 0.00 0.00 0.00 3.72
1991 2053 2.695613 TGTGTGTTTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
1992 2054 1.950216 TGTGTGTTTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1993 2055 2.287248 TGTGTGTTTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1994 2056 1.950216 TGTGTTTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1995 2057 2.287248 TGTGTTTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1996 2058 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
1997 2059 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
1998 2060 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
1999 2061 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2000 2062 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2001 2063 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2002 2064 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2003 2065 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2004 2066 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2005 2067 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2006 2068 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2007 2069 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2008 2070 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2009 2071 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2010 2072 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2011 2073 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2012 2074 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2013 2075 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2014 2076 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2015 2077 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2072 2134 8.219178 AGTACTATATGTGTTACTACCTCTGCT 58.781 37.037 0.00 0.00 0.00 4.24
2330 2392 3.289836 GGACAGAGGGAGTACTACCTTC 58.710 54.545 28.01 20.27 46.12 3.46
2332 2394 4.165758 GGACAGAGGGAGTACTACCTTCTA 59.834 50.000 28.01 0.00 46.12 2.10
2336 2398 7.190501 ACAGAGGGAGTACTACCTTCTAAAAT 58.809 38.462 28.01 2.66 46.12 1.82
2440 3420 6.183360 TGTGCCAGTTGTAATTCTGATTTTGT 60.183 34.615 0.00 0.00 34.02 2.83
2444 3424 9.255304 GCCAGTTGTAATTCTGATTTTGTTTTA 57.745 29.630 0.00 0.00 34.02 1.52
2477 3457 6.815641 AGTGTGCTACTATGCTATATCAATGC 59.184 38.462 0.00 0.00 38.04 3.56
2551 3531 5.047377 AGAGATTGTTGACTCTCAAGAGACC 60.047 44.000 13.83 5.80 44.74 3.85
2619 3599 4.524328 CCTCTAACAAGCCTTTTTGTGGAT 59.476 41.667 0.00 0.00 40.24 3.41
2669 3649 5.569355 AGTTTCATGTGGTGATGTGGATAA 58.431 37.500 0.00 0.00 36.54 1.75
2721 3701 7.440856 GTGATTTTCTAGAATCTGGATGGAGTC 59.559 40.741 5.89 0.00 37.04 3.36
2886 3867 6.934645 TGATCACTGTTTGGTTTAGGAGTTAG 59.065 38.462 0.00 0.00 0.00 2.34
2887 3868 5.061179 TCACTGTTTGGTTTAGGAGTTAGC 58.939 41.667 0.00 0.00 0.00 3.09
2888 3869 4.215613 CACTGTTTGGTTTAGGAGTTAGCC 59.784 45.833 0.00 0.00 0.00 3.93
2889 3870 4.141344 ACTGTTTGGTTTAGGAGTTAGCCA 60.141 41.667 0.00 0.00 0.00 4.75
2890 3871 4.394729 TGTTTGGTTTAGGAGTTAGCCAG 58.605 43.478 0.00 0.00 0.00 4.85
2891 3872 4.141344 TGTTTGGTTTAGGAGTTAGCCAGT 60.141 41.667 0.00 0.00 0.00 4.00
2892 3873 4.717279 TTGGTTTAGGAGTTAGCCAGTT 57.283 40.909 0.00 0.00 0.00 3.16
2893 3874 5.829062 TTGGTTTAGGAGTTAGCCAGTTA 57.171 39.130 0.00 0.00 0.00 2.24
2967 3948 4.036518 AGAGGGTGCTCAGACAATAATCT 58.963 43.478 0.00 0.00 0.00 2.40
3068 4049 1.459450 GCCAAAGGAGTCCGCATAAA 58.541 50.000 2.76 0.00 0.00 1.40
3077 4058 3.181458 GGAGTCCGCATAAAATCTGGGTA 60.181 47.826 0.00 0.00 0.00 3.69
3078 4059 4.505039 GGAGTCCGCATAAAATCTGGGTAT 60.505 45.833 0.00 0.00 0.00 2.73
3079 4060 4.389374 AGTCCGCATAAAATCTGGGTATG 58.611 43.478 0.00 0.00 0.00 2.39
3081 4062 4.819630 GTCCGCATAAAATCTGGGTATGAA 59.180 41.667 0.00 0.00 0.00 2.57
3082 4063 5.298276 GTCCGCATAAAATCTGGGTATGAAA 59.702 40.000 0.00 0.00 0.00 2.69
3083 4064 5.530915 TCCGCATAAAATCTGGGTATGAAAG 59.469 40.000 0.00 0.00 0.00 2.62
3085 4066 6.207417 CCGCATAAAATCTGGGTATGAAAGAT 59.793 38.462 0.00 0.00 31.99 2.40
3086 4067 7.390440 CCGCATAAAATCTGGGTATGAAAGATA 59.610 37.037 0.00 0.00 30.50 1.98
3087 4068 8.446273 CGCATAAAATCTGGGTATGAAAGATAG 58.554 37.037 0.00 0.00 30.50 2.08
3088 4069 9.507329 GCATAAAATCTGGGTATGAAAGATAGA 57.493 33.333 0.00 0.00 30.50 1.98
3120 4101 7.862274 AATCAGGAGTATGAGTATGATCCAA 57.138 36.000 0.00 0.00 31.44 3.53
3121 4102 7.862274 ATCAGGAGTATGAGTATGATCCAAA 57.138 36.000 0.00 0.00 31.44 3.28
3122 4103 7.055667 TCAGGAGTATGAGTATGATCCAAAC 57.944 40.000 0.00 0.00 0.00 2.93
3123 4104 6.611236 TCAGGAGTATGAGTATGATCCAAACA 59.389 38.462 0.00 0.00 0.00 2.83
3124 4105 7.290948 TCAGGAGTATGAGTATGATCCAAACAT 59.709 37.037 0.00 0.00 0.00 2.71
3125 4106 8.588472 CAGGAGTATGAGTATGATCCAAACATA 58.412 37.037 0.00 0.00 0.00 2.29
3126 4107 8.589338 AGGAGTATGAGTATGATCCAAACATAC 58.411 37.037 0.00 0.00 45.75 2.39
3136 4117 9.950496 GTATGATCCAAACATACTCCTGATTAT 57.050 33.333 0.00 0.00 43.57 1.28
3203 4184 6.723298 TGTGTTTTAATCATGTTTGGGTCT 57.277 33.333 0.00 0.00 0.00 3.85
3204 4185 7.118496 TGTGTTTTAATCATGTTTGGGTCTT 57.882 32.000 0.00 0.00 0.00 3.01
3205 4186 7.560368 TGTGTTTTAATCATGTTTGGGTCTTT 58.440 30.769 0.00 0.00 0.00 2.52
3206 4187 7.493971 TGTGTTTTAATCATGTTTGGGTCTTTG 59.506 33.333 0.00 0.00 0.00 2.77
3207 4188 6.989169 TGTTTTAATCATGTTTGGGTCTTTGG 59.011 34.615 0.00 0.00 0.00 3.28
3208 4189 5.736951 TTAATCATGTTTGGGTCTTTGGG 57.263 39.130 0.00 0.00 0.00 4.12
3209 4190 2.765689 TCATGTTTGGGTCTTTGGGT 57.234 45.000 0.00 0.00 0.00 4.51
3210 4191 3.885976 TCATGTTTGGGTCTTTGGGTA 57.114 42.857 0.00 0.00 0.00 3.69
3211 4192 4.396357 TCATGTTTGGGTCTTTGGGTAT 57.604 40.909 0.00 0.00 0.00 2.73
3212 4193 4.085733 TCATGTTTGGGTCTTTGGGTATG 58.914 43.478 0.00 0.00 0.00 2.39
3213 4194 3.885976 TGTTTGGGTCTTTGGGTATGA 57.114 42.857 0.00 0.00 0.00 2.15
3214 4195 4.186077 TGTTTGGGTCTTTGGGTATGAA 57.814 40.909 0.00 0.00 0.00 2.57
3215 4196 4.547671 TGTTTGGGTCTTTGGGTATGAAA 58.452 39.130 0.00 0.00 0.00 2.69
3216 4197 4.586841 TGTTTGGGTCTTTGGGTATGAAAG 59.413 41.667 0.00 0.00 0.00 2.62
3217 4198 4.733077 TTGGGTCTTTGGGTATGAAAGA 57.267 40.909 0.00 0.00 37.15 2.52
3218 4199 4.946160 TGGGTCTTTGGGTATGAAAGAT 57.054 40.909 0.00 0.00 40.60 2.40
3219 4200 6.395780 TTGGGTCTTTGGGTATGAAAGATA 57.604 37.500 0.00 0.00 40.60 1.98
3220 4201 6.001449 TGGGTCTTTGGGTATGAAAGATAG 57.999 41.667 0.00 0.00 40.60 2.08
3221 4202 5.729229 TGGGTCTTTGGGTATGAAAGATAGA 59.271 40.000 0.00 0.00 40.60 1.98
3222 4203 6.389869 TGGGTCTTTGGGTATGAAAGATAGAT 59.610 38.462 0.00 0.00 40.60 1.98
3223 4204 7.570982 TGGGTCTTTGGGTATGAAAGATAGATA 59.429 37.037 0.00 0.00 40.60 1.98
3224 4205 8.437575 GGGTCTTTGGGTATGAAAGATAGATAA 58.562 37.037 0.00 0.00 40.60 1.75
3253 4234 7.578310 AATCAGGAGTATGTTTGGATCATTG 57.422 36.000 0.00 0.00 0.00 2.82
3254 4235 6.312141 TCAGGAGTATGTTTGGATCATTGA 57.688 37.500 0.00 0.00 0.00 2.57
3255 4236 6.903516 TCAGGAGTATGTTTGGATCATTGAT 58.096 36.000 0.00 0.00 0.00 2.57
3256 4237 7.348815 TCAGGAGTATGTTTGGATCATTGATT 58.651 34.615 0.00 0.00 0.00 2.57
3257 4238 7.835682 TCAGGAGTATGTTTGGATCATTGATTT 59.164 33.333 0.00 0.00 0.00 2.17
3258 4239 9.123902 CAGGAGTATGTTTGGATCATTGATTTA 57.876 33.333 0.00 0.00 0.00 1.40
3259 4240 9.347240 AGGAGTATGTTTGGATCATTGATTTAG 57.653 33.333 0.00 0.00 0.00 1.85
3260 4241 9.342308 GGAGTATGTTTGGATCATTGATTTAGA 57.658 33.333 0.00 0.00 0.00 2.10
3263 4244 9.455847 GTATGTTTGGATCATTGATTTAGAAGC 57.544 33.333 0.00 0.00 0.00 3.86
3264 4245 7.707624 TGTTTGGATCATTGATTTAGAAGCT 57.292 32.000 0.00 0.00 0.00 3.74
3265 4246 7.541162 TGTTTGGATCATTGATTTAGAAGCTG 58.459 34.615 0.00 0.00 0.00 4.24
3266 4247 7.177216 TGTTTGGATCATTGATTTAGAAGCTGT 59.823 33.333 0.00 0.00 0.00 4.40
3267 4248 7.707624 TTGGATCATTGATTTAGAAGCTGTT 57.292 32.000 0.00 0.00 0.00 3.16
3268 4249 7.707624 TGGATCATTGATTTAGAAGCTGTTT 57.292 32.000 0.00 0.00 0.00 2.83
3269 4250 8.125978 TGGATCATTGATTTAGAAGCTGTTTT 57.874 30.769 0.00 0.00 0.00 2.43
3270 4251 8.587608 TGGATCATTGATTTAGAAGCTGTTTTT 58.412 29.630 0.00 0.00 0.00 1.94
3295 4276 9.461312 TTTTTAATCATGAGTATGTTAGCCAGT 57.539 29.630 3.33 0.00 35.73 4.00
3296 4277 9.461312 TTTTAATCATGAGTATGTTAGCCAGTT 57.539 29.630 3.33 0.00 35.73 3.16
3298 4279 9.764363 TTAATCATGAGTATGTTAGCCAGTTAG 57.236 33.333 3.33 0.00 35.73 2.34
3299 4280 6.161855 TCATGAGTATGTTAGCCAGTTAGG 57.838 41.667 0.00 0.00 36.65 2.69
3313 4294 4.986622 CCAGTTAGGCATAGCTGTTTTTC 58.013 43.478 18.85 0.00 38.26 2.29
3314 4295 4.702131 CCAGTTAGGCATAGCTGTTTTTCT 59.298 41.667 18.85 0.00 38.26 2.52
3315 4296 5.183904 CCAGTTAGGCATAGCTGTTTTTCTT 59.816 40.000 18.85 0.00 38.26 2.52
3316 4297 6.088824 CAGTTAGGCATAGCTGTTTTTCTTG 58.911 40.000 13.35 0.00 35.97 3.02
3317 4298 6.003950 AGTTAGGCATAGCTGTTTTTCTTGA 58.996 36.000 0.00 0.00 0.00 3.02
3318 4299 6.660949 AGTTAGGCATAGCTGTTTTTCTTGAT 59.339 34.615 0.00 0.00 0.00 2.57
3319 4300 5.573337 AGGCATAGCTGTTTTTCTTGATC 57.427 39.130 0.00 0.00 0.00 2.92
3320 4301 5.012239 AGGCATAGCTGTTTTTCTTGATCA 58.988 37.500 0.00 0.00 0.00 2.92
3321 4302 5.098211 GGCATAGCTGTTTTTCTTGATCAC 58.902 41.667 0.00 0.00 0.00 3.06
3322 4303 5.105997 GGCATAGCTGTTTTTCTTGATCACT 60.106 40.000 0.00 0.00 0.00 3.41
3323 4304 6.026513 GCATAGCTGTTTTTCTTGATCACTC 58.973 40.000 0.00 0.00 0.00 3.51
3324 4305 6.549952 CATAGCTGTTTTTCTTGATCACTCC 58.450 40.000 0.00 0.00 0.00 3.85
3325 4306 4.723309 AGCTGTTTTTCTTGATCACTCCT 58.277 39.130 0.00 0.00 0.00 3.69
3326 4307 4.518211 AGCTGTTTTTCTTGATCACTCCTG 59.482 41.667 0.00 0.00 0.00 3.86
3327 4308 4.516698 GCTGTTTTTCTTGATCACTCCTGA 59.483 41.667 0.00 0.00 0.00 3.86
3336 4317 2.573009 TGATCACTCCTGATTGCTTGGA 59.427 45.455 0.00 0.00 37.24 3.53
3525 4508 5.705609 AAACTATTGTTTGTAGGGCACAG 57.294 39.130 4.42 0.00 43.90 3.66
3624 4608 2.230266 TGTACTCTGTGTCGCATGCTTA 59.770 45.455 17.13 0.06 0.00 3.09
3711 4695 4.464069 TGTTTTCTTTTGGAGGTTGTGG 57.536 40.909 0.00 0.00 0.00 4.17
3787 4771 7.410120 AATTCATCCAAGGTTTGTCTTATCC 57.590 36.000 0.00 0.00 0.00 2.59
3972 4956 9.403583 TGGGATAAATCTGAAGTAATAACCAAC 57.596 33.333 0.00 0.00 0.00 3.77
4146 5131 3.873361 TGCTGTAATGCTAGCTTCATGTC 59.127 43.478 17.23 1.44 40.52 3.06
4210 5195 0.764890 AGTGGCCTAACTTGAGCACA 59.235 50.000 3.32 0.00 0.00 4.57
4243 5228 3.869272 GAACCTCTGCGCGCATGG 61.869 66.667 35.77 35.77 0.00 3.66
4267 5252 6.331369 CACTTTTGTGTCCAATTCCTGTAT 57.669 37.500 0.00 0.00 44.94 2.29
4290 5275 0.110486 AACCGATCCAGTGGTTTGCT 59.890 50.000 9.54 0.00 46.04 3.91
4298 5283 5.527214 CGATCCAGTGGTTTGCTATGATTTA 59.473 40.000 9.54 0.00 0.00 1.40
4421 5406 4.997395 TCAATTCAGCCTTAGTGTTCAGAC 59.003 41.667 0.00 0.00 0.00 3.51
4423 5408 1.961394 TCAGCCTTAGTGTTCAGACGT 59.039 47.619 0.00 0.00 0.00 4.34
4424 5409 2.030185 TCAGCCTTAGTGTTCAGACGTC 60.030 50.000 7.70 7.70 0.00 4.34
4448 5433 5.391736 CCTTGTGCTCTTTCATAAAGCAGAG 60.392 44.000 0.00 0.00 45.99 3.35
4451 5436 3.928992 TGCTCTTTCATAAAGCAGAGACG 59.071 43.478 0.00 0.00 40.91 4.18
4529 5514 7.775093 TCATGGTTTACTTCAGAATCCTTATGG 59.225 37.037 0.00 0.00 0.00 2.74
4668 5653 4.531854 TGTTTCCATCAGTTTGAGTTCCA 58.468 39.130 0.00 0.00 0.00 3.53
4669 5654 5.139727 TGTTTCCATCAGTTTGAGTTCCAT 58.860 37.500 0.00 0.00 0.00 3.41
4698 5683 1.754226 GTTTTGGCCTCACACTTTCCA 59.246 47.619 3.32 0.00 0.00 3.53
4883 5869 4.553330 ATCGAGTTACACCCACTGAAAT 57.447 40.909 0.00 0.00 0.00 2.17
4892 5878 5.262588 ACACCCACTGAAATTTTTCACTC 57.737 39.130 1.66 0.00 41.88 3.51
4920 5906 2.496899 TTCAGATTGAGGAGGGCAAC 57.503 50.000 0.00 0.00 0.00 4.17
5103 6089 2.172679 TCTGTGCAGGTCGGTACAATA 58.827 47.619 0.00 0.00 32.97 1.90
5139 6125 3.594603 CTTCCTAAAGCTCTCACGGAA 57.405 47.619 0.00 0.00 0.00 4.30
5198 6184 1.751437 ATTTCCGAACTAAGCTGGCC 58.249 50.000 0.00 0.00 0.00 5.36
5203 6189 3.952628 GAACTAAGCTGGCCGGCGT 62.953 63.158 30.54 29.36 37.29 5.68
5204 6190 3.546714 AACTAAGCTGGCCGGCGTT 62.547 57.895 30.25 24.07 37.29 4.84
5206 6192 4.323477 TAAGCTGGCCGGCGTTGT 62.323 61.111 30.25 18.72 37.29 3.32
5211 6197 3.673956 CTGGCCGGCGTTGTGGATA 62.674 63.158 22.54 0.00 0.00 2.59
5212 6198 2.203153 GGCCGGCGTTGTGGATAT 60.203 61.111 22.54 0.00 0.00 1.63
5213 6199 2.251642 GGCCGGCGTTGTGGATATC 61.252 63.158 22.54 0.00 0.00 1.63
5214 6200 1.227556 GCCGGCGTTGTGGATATCT 60.228 57.895 12.58 0.00 0.00 1.98
5215 6201 1.222115 GCCGGCGTTGTGGATATCTC 61.222 60.000 12.58 0.00 0.00 2.75
5216 6202 0.389391 CCGGCGTTGTGGATATCTCT 59.611 55.000 6.01 0.00 0.00 3.10
5222 6208 4.873827 GGCGTTGTGGATATCTCTTTGTTA 59.126 41.667 2.05 0.00 0.00 2.41
5265 6251 6.094742 TGCTGAACAAAACTAAACACTCATCA 59.905 34.615 0.00 0.00 0.00 3.07
5300 6293 2.423892 GAGTGGACTCTAATCAGCGTCA 59.576 50.000 0.00 0.00 38.10 4.35
5465 6460 4.565444 CCATGTGATGTTAAGGGTCTGACA 60.565 45.833 10.38 0.00 0.00 3.58
5494 6489 2.279921 CGTATGTGCGTCATCTGTTCTG 59.720 50.000 0.00 0.00 37.91 3.02
5496 6491 0.249826 TGTGCGTCATCTGTTCTGCA 60.250 50.000 0.00 0.00 0.00 4.41
5497 6492 1.081892 GTGCGTCATCTGTTCTGCAT 58.918 50.000 0.00 0.00 34.54 3.96
5498 6493 1.081094 TGCGTCATCTGTTCTGCATG 58.919 50.000 0.00 0.00 0.00 4.06
5499 6494 0.247974 GCGTCATCTGTTCTGCATGC 60.248 55.000 11.82 11.82 0.00 4.06
5501 6496 2.543641 CGTCATCTGTTCTGCATGCTA 58.456 47.619 20.33 4.02 0.00 3.49
5518 6514 2.163509 GCTATATCAGGAGACCAGCGA 58.836 52.381 0.00 0.00 0.00 4.93
5555 6555 9.914131 GGGGCTATGAATTTATATTCTGAAAAC 57.086 33.333 7.32 0.00 40.68 2.43
5595 6595 6.524101 TTTCTGGGGGAGAATTTTATTTCG 57.476 37.500 0.00 0.00 40.53 3.46
5600 6605 4.441495 GGGGGAGAATTTTATTTCGCCTTG 60.441 45.833 6.87 0.00 42.99 3.61
5698 6703 6.536224 GGCTCCATGAAATAAATGTGGAAAAG 59.464 38.462 0.00 0.00 38.41 2.27
5699 6704 6.036408 GCTCCATGAAATAAATGTGGAAAAGC 59.964 38.462 0.00 0.00 38.41 3.51
5749 6754 3.686016 TCTGGGGTTCTATTTGCTTGAC 58.314 45.455 0.00 0.00 0.00 3.18
5784 6790 3.146066 TGCTAATCTTCAAACCTGCGTT 58.854 40.909 0.00 0.00 0.00 4.84
5808 6815 3.662759 TGGTCTGGTCTTGTTCCTTTT 57.337 42.857 0.00 0.00 0.00 2.27
5812 6819 5.073144 TGGTCTGGTCTTGTTCCTTTTATCT 59.927 40.000 0.00 0.00 0.00 1.98
5813 6820 6.004574 GGTCTGGTCTTGTTCCTTTTATCTT 58.995 40.000 0.00 0.00 0.00 2.40
5838 6845 1.091771 ATGCTACAGCGTGTGCATCC 61.092 55.000 15.14 0.00 46.23 3.51
5854 6861 2.711542 CATCCGGTAGAAAGGTTGCTT 58.288 47.619 0.00 0.00 0.00 3.91
5880 6910 1.334869 GTTTGACAGACAGGTTGCTGG 59.665 52.381 0.00 0.00 36.47 4.85
5888 6918 1.344953 ACAGGTTGCTGGGTCTGACA 61.345 55.000 10.38 0.00 0.00 3.58
5908 6938 9.832445 TCTGACAAAATTACTGATAATACTCCC 57.168 33.333 0.00 0.00 30.42 4.30
5919 6949 5.285401 TGATAATACTCCCTCTGTCCCAAA 58.715 41.667 0.00 0.00 0.00 3.28
5920 6950 5.729229 TGATAATACTCCCTCTGTCCCAAAA 59.271 40.000 0.00 0.00 0.00 2.44
5921 6951 6.389869 TGATAATACTCCCTCTGTCCCAAAAT 59.610 38.462 0.00 0.00 0.00 1.82
5922 6952 7.570982 TGATAATACTCCCTCTGTCCCAAAATA 59.429 37.037 0.00 0.00 0.00 1.40
5923 6953 6.652205 AATACTCCCTCTGTCCCAAAATAA 57.348 37.500 0.00 0.00 0.00 1.40
5936 6966 6.090783 GTCCCAAAATAAGTGGAACGAAATC 58.909 40.000 0.00 0.00 45.86 2.17
5977 7007 2.025226 TCTGTGACGGAGGGAGTATCTT 60.025 50.000 0.00 0.00 33.73 2.40
5997 7027 9.007901 GTATCTTGTATCGTAGTAATACCCTGT 57.992 37.037 0.00 0.00 0.00 4.00
6053 7084 6.533730 ACACCTTGACAGTTGATGAATAGAA 58.466 36.000 0.00 0.00 0.00 2.10
6117 7150 5.801380 TCCAAAATAAGTGTCTGGAGTACC 58.199 41.667 0.00 0.00 32.42 3.34
6127 7160 6.195700 AGTGTCTGGAGTACCATTATAGTGT 58.804 40.000 0.00 0.00 45.87 3.55
6128 7161 6.321690 AGTGTCTGGAGTACCATTATAGTGTC 59.678 42.308 0.00 0.00 45.87 3.67
6129 7162 6.096423 GTGTCTGGAGTACCATTATAGTGTCA 59.904 42.308 0.00 0.00 45.87 3.58
6130 7163 6.666113 TGTCTGGAGTACCATTATAGTGTCAA 59.334 38.462 0.00 0.00 45.87 3.18
6131 7164 7.179516 TGTCTGGAGTACCATTATAGTGTCAAA 59.820 37.037 0.00 0.00 45.87 2.69
6132 7165 8.038944 GTCTGGAGTACCATTATAGTGTCAAAA 58.961 37.037 0.00 0.00 45.87 2.44
6133 7166 8.598916 TCTGGAGTACCATTATAGTGTCAAAAA 58.401 33.333 0.00 0.00 45.87 1.94
6134 7167 8.556213 TGGAGTACCATTATAGTGTCAAAAAC 57.444 34.615 0.00 0.00 41.77 2.43
6135 7168 8.158132 TGGAGTACCATTATAGTGTCAAAAACA 58.842 33.333 0.00 0.00 41.77 2.83
6136 7169 9.174166 GGAGTACCATTATAGTGTCAAAAACAT 57.826 33.333 0.00 0.00 36.81 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
260 276 8.677300 GTTTGATCTAGATGCAAGGTTGATTAA 58.323 33.333 10.74 0.00 0.00 1.40
270 286 5.957771 ACTAGGGTTTGATCTAGATGCAA 57.042 39.130 10.74 11.12 37.13 4.08
316 332 6.498651 AGTTCAATCTCCCTTTCTCTCTGTTA 59.501 38.462 0.00 0.00 0.00 2.41
332 348 1.980765 TGGCCTCTGTGAGTTCAATCT 59.019 47.619 3.32 0.00 0.00 2.40
356 372 1.220206 CCTTGTCCTCGAGCTGCAT 59.780 57.895 6.99 0.00 0.00 3.96
384 403 1.115930 AGCCGGCGGTGATCTTCTAT 61.116 55.000 28.82 0.00 0.00 1.98
428 447 0.673985 TATCTTCATCGGTCGGCAGG 59.326 55.000 0.00 0.00 0.00 4.85
435 454 0.747255 AGCAGCGTATCTTCATCGGT 59.253 50.000 0.00 0.00 35.75 4.69
447 466 2.125912 CGAGCAGGTAAGCAGCGT 60.126 61.111 0.00 0.00 36.85 5.07
451 470 2.273179 ACCGACGAGCAGGTAAGCA 61.273 57.895 0.00 0.00 39.30 3.91
501 520 2.677228 CCGCCACCATTCTCCCTT 59.323 61.111 0.00 0.00 0.00 3.95
598 620 2.125512 GATCTCACCCGCGTTGCT 60.126 61.111 4.92 0.00 0.00 3.91
601 623 2.126071 CACGATCTCACCCGCGTT 60.126 61.111 4.92 0.00 34.37 4.84
613 635 0.749649 GACCAGAGAGATGGCACGAT 59.250 55.000 0.00 0.00 44.80 3.73
680 718 1.853114 AAACGTCTGAGCTCGCGAGA 61.853 55.000 38.74 17.90 39.12 4.04
691 729 0.396811 AGACCCAGGGAAAACGTCTG 59.603 55.000 14.54 0.00 32.68 3.51
694 742 0.108019 GTCAGACCCAGGGAAAACGT 59.892 55.000 14.54 0.00 0.00 3.99
700 748 2.122729 CCAGGTCAGACCCAGGGA 59.877 66.667 14.54 0.00 39.75 4.20
708 756 1.334160 TAAAGCACGTCCAGGTCAGA 58.666 50.000 0.00 0.00 0.00 3.27
751 801 4.533222 CCGTTTGATTGACTGTGTTTACC 58.467 43.478 0.00 0.00 0.00 2.85
805 855 3.510753 AGTGTTTGGTTGCATGCATATGA 59.489 39.130 23.37 2.82 36.36 2.15
814 864 0.847373 TAGGGGAGTGTTTGGTTGCA 59.153 50.000 0.00 0.00 0.00 4.08
853 903 1.032114 CGTGGGGAAAGGGATTCAGC 61.032 60.000 0.00 0.00 39.98 4.26
940 995 2.545731 GAGCAGATCTTCCGTCTTTCC 58.454 52.381 0.00 0.00 0.00 3.13
1425 1483 2.094130 CCAGGTTAGAGAAACGAGGGTC 60.094 54.545 0.00 0.00 39.13 4.46
1426 1484 1.900486 CCAGGTTAGAGAAACGAGGGT 59.100 52.381 0.00 0.00 39.13 4.34
1427 1485 2.176889 TCCAGGTTAGAGAAACGAGGG 58.823 52.381 0.00 0.00 39.13 4.30
1428 1486 4.184629 CAATCCAGGTTAGAGAAACGAGG 58.815 47.826 0.00 0.00 39.13 4.63
1474 1532 0.529337 CCGAGAATCAGCTGCATCGT 60.529 55.000 9.47 0.10 33.17 3.73
1643 1701 1.131826 CGCGCTCTAAAACCCAACG 59.868 57.895 5.56 0.00 0.00 4.10
1644 1702 0.952010 TCCGCGCTCTAAAACCCAAC 60.952 55.000 5.56 0.00 0.00 3.77
1772 1830 3.997021 AGAACAAATCTACAAGGACAGCG 59.003 43.478 0.00 0.00 36.32 5.18
1798 1856 6.014584 CCTTGCCCTAATTCCTAAACAAAACT 60.015 38.462 0.00 0.00 0.00 2.66
1868 1926 1.608283 GCAAACTCCACTCCTAGCGTT 60.608 52.381 0.00 0.00 0.00 4.84
1869 1927 0.037232 GCAAACTCCACTCCTAGCGT 60.037 55.000 0.00 0.00 0.00 5.07
1921 1979 8.651588 CCAGCTTGCTAAATATTCGTTCTATAG 58.348 37.037 0.00 0.00 0.00 1.31
1979 2041 1.265365 CACACACACACACACACACAA 59.735 47.619 0.00 0.00 0.00 3.33
1984 2046 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1985 2047 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1986 2048 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1987 2049 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1988 2050 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1989 2051 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1990 2052 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1991 2053 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1992 2054 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1993 2055 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1994 2056 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1995 2057 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1996 2058 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1997 2059 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
1998 2060 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1999 2061 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2000 2062 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2001 2063 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2002 2064 1.598882 AACACACACACACACACACA 58.401 45.000 0.00 0.00 0.00 3.72
2003 2065 2.287308 ACAAACACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2004 2066 1.950216 ACAAACACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2005 2067 2.287308 ACACAAACACACACACACACAC 60.287 45.455 0.00 0.00 0.00 3.82
2006 2068 1.950216 ACACAAACACACACACACACA 59.050 42.857 0.00 0.00 0.00 3.72
2007 2069 2.031595 TGACACAAACACACACACACAC 60.032 45.455 0.00 0.00 0.00 3.82
2008 2070 2.222027 TGACACAAACACACACACACA 58.778 42.857 0.00 0.00 0.00 3.72
2009 2071 2.979401 TGACACAAACACACACACAC 57.021 45.000 0.00 0.00 0.00 3.82
2010 2072 3.058570 GTCTTGACACAAACACACACACA 60.059 43.478 0.00 0.00 0.00 3.72
2011 2073 3.058570 TGTCTTGACACAAACACACACAC 60.059 43.478 0.00 0.00 0.00 3.82
2012 2074 3.142174 TGTCTTGACACAAACACACACA 58.858 40.909 0.00 0.00 0.00 3.72
2013 2075 3.822594 TGTCTTGACACAAACACACAC 57.177 42.857 0.00 0.00 0.00 3.82
2014 2076 4.380339 CCATTGTCTTGACACAAACACACA 60.380 41.667 2.62 0.00 39.69 3.72
2015 2077 4.104776 CCATTGTCTTGACACAAACACAC 58.895 43.478 2.62 0.00 39.69 3.82
2056 2118 2.176889 TGGGAGCAGAGGTAGTAACAC 58.823 52.381 0.00 0.00 0.00 3.32
2072 2134 9.246670 CTGAATTTATATGCCATCTATTTGGGA 57.753 33.333 0.00 0.00 41.72 4.37
2263 2325 7.707104 TCCAGTGAAAAAGTCAATTCTTTCTC 58.293 34.615 0.00 0.00 38.23 2.87
2296 2358 2.780010 CCTCTGTCCCCAAATAGATGGT 59.220 50.000 0.00 0.00 38.91 3.55
2301 2363 2.482494 ACTCCCTCTGTCCCCAAATAG 58.518 52.381 0.00 0.00 0.00 1.73
2440 3420 9.887406 GCATAGTAGCACACTTAAAAACTAAAA 57.113 29.630 0.00 0.00 38.80 1.52
2477 3457 4.392047 TCCAATATTGCATCTGCCTACAG 58.608 43.478 10.11 0.00 45.95 2.74
2551 3531 2.225019 GTCAGCAGTGATCAACAAGGTG 59.775 50.000 0.00 3.99 34.36 4.00
2669 3649 9.155975 CAGTGTAAAGTGACTAATATTCTGCTT 57.844 33.333 0.00 0.00 0.00 3.91
2887 3868 3.544684 TGTTGCAGATATGCCTAACTGG 58.455 45.455 10.32 0.00 39.35 4.00
2888 3869 4.577693 ACATGTTGCAGATATGCCTAACTG 59.422 41.667 10.32 10.45 32.45 3.16
2889 3870 4.785301 ACATGTTGCAGATATGCCTAACT 58.215 39.130 10.32 0.00 30.59 2.24
2890 3871 4.818546 AGACATGTTGCAGATATGCCTAAC 59.181 41.667 10.32 9.09 30.59 2.34
2891 3872 4.818005 CAGACATGTTGCAGATATGCCTAA 59.182 41.667 10.32 0.00 30.59 2.69
2892 3873 4.141642 ACAGACATGTTGCAGATATGCCTA 60.142 41.667 10.32 0.00 35.63 3.93
2893 3874 3.211865 CAGACATGTTGCAGATATGCCT 58.788 45.455 10.32 0.00 30.59 4.75
3021 4002 7.455641 ACTGCTATCCTAGTGTGTATGATAC 57.544 40.000 0.00 0.00 0.00 2.24
3095 4076 8.956446 TTGGATCATACTCATACTCCTGATTA 57.044 34.615 0.00 0.00 0.00 1.75
3096 4077 7.862274 TTGGATCATACTCATACTCCTGATT 57.138 36.000 0.00 0.00 0.00 2.57
3097 4078 7.290948 TGTTTGGATCATACTCATACTCCTGAT 59.709 37.037 0.00 0.00 0.00 2.90
3098 4079 6.611236 TGTTTGGATCATACTCATACTCCTGA 59.389 38.462 0.00 0.00 0.00 3.86
3099 4080 6.820335 TGTTTGGATCATACTCATACTCCTG 58.180 40.000 0.00 0.00 0.00 3.86
3100 4081 7.623999 ATGTTTGGATCATACTCATACTCCT 57.376 36.000 0.00 0.00 0.00 3.69
3101 4082 8.764524 GTATGTTTGGATCATACTCATACTCC 57.235 38.462 14.27 0.00 42.22 3.85
3110 4091 9.950496 ATAATCAGGAGTATGTTTGGATCATAC 57.050 33.333 7.67 7.67 44.37 2.39
3177 4158 9.034800 AGACCCAAACATGATTAAAACACATAT 57.965 29.630 0.00 0.00 0.00 1.78
3178 4159 8.415950 AGACCCAAACATGATTAAAACACATA 57.584 30.769 0.00 0.00 0.00 2.29
3179 4160 7.301868 AGACCCAAACATGATTAAAACACAT 57.698 32.000 0.00 0.00 0.00 3.21
3180 4161 6.723298 AGACCCAAACATGATTAAAACACA 57.277 33.333 0.00 0.00 0.00 3.72
3181 4162 7.042119 CCAAAGACCCAAACATGATTAAAACAC 60.042 37.037 0.00 0.00 0.00 3.32
3182 4163 6.989169 CCAAAGACCCAAACATGATTAAAACA 59.011 34.615 0.00 0.00 0.00 2.83
3183 4164 6.426633 CCCAAAGACCCAAACATGATTAAAAC 59.573 38.462 0.00 0.00 0.00 2.43
3184 4165 6.100424 ACCCAAAGACCCAAACATGATTAAAA 59.900 34.615 0.00 0.00 0.00 1.52
3185 4166 5.604650 ACCCAAAGACCCAAACATGATTAAA 59.395 36.000 0.00 0.00 0.00 1.52
3186 4167 5.151454 ACCCAAAGACCCAAACATGATTAA 58.849 37.500 0.00 0.00 0.00 1.40
3187 4168 4.746466 ACCCAAAGACCCAAACATGATTA 58.254 39.130 0.00 0.00 0.00 1.75
3188 4169 3.586429 ACCCAAAGACCCAAACATGATT 58.414 40.909 0.00 0.00 0.00 2.57
3189 4170 3.258722 ACCCAAAGACCCAAACATGAT 57.741 42.857 0.00 0.00 0.00 2.45
3190 4171 2.765689 ACCCAAAGACCCAAACATGA 57.234 45.000 0.00 0.00 0.00 3.07
3191 4172 4.085733 TCATACCCAAAGACCCAAACATG 58.914 43.478 0.00 0.00 0.00 3.21
3192 4173 4.396357 TCATACCCAAAGACCCAAACAT 57.604 40.909 0.00 0.00 0.00 2.71
3193 4174 3.885976 TCATACCCAAAGACCCAAACA 57.114 42.857 0.00 0.00 0.00 2.83
3194 4175 4.830600 TCTTTCATACCCAAAGACCCAAAC 59.169 41.667 0.00 0.00 35.40 2.93
3195 4176 5.068215 TCTTTCATACCCAAAGACCCAAA 57.932 39.130 0.00 0.00 35.40 3.28
3196 4177 4.733077 TCTTTCATACCCAAAGACCCAA 57.267 40.909 0.00 0.00 35.40 4.12
3197 4178 4.946160 ATCTTTCATACCCAAAGACCCA 57.054 40.909 0.00 0.00 41.55 4.51
3198 4179 6.248569 TCTATCTTTCATACCCAAAGACCC 57.751 41.667 0.00 0.00 41.55 4.46
3227 4208 9.293404 CAATGATCCAAACATACTCCTGATTAT 57.707 33.333 0.00 0.00 0.00 1.28
3228 4209 8.493607 TCAATGATCCAAACATACTCCTGATTA 58.506 33.333 0.00 0.00 0.00 1.75
3229 4210 7.348815 TCAATGATCCAAACATACTCCTGATT 58.651 34.615 0.00 0.00 0.00 2.57
3230 4211 6.903516 TCAATGATCCAAACATACTCCTGAT 58.096 36.000 0.00 0.00 0.00 2.90
3231 4212 6.312141 TCAATGATCCAAACATACTCCTGA 57.688 37.500 0.00 0.00 0.00 3.86
3232 4213 7.578310 AATCAATGATCCAAACATACTCCTG 57.422 36.000 0.00 0.00 0.00 3.86
3233 4214 9.347240 CTAAATCAATGATCCAAACATACTCCT 57.653 33.333 0.00 0.00 0.00 3.69
3234 4215 9.342308 TCTAAATCAATGATCCAAACATACTCC 57.658 33.333 0.00 0.00 0.00 3.85
3237 4218 9.455847 GCTTCTAAATCAATGATCCAAACATAC 57.544 33.333 0.00 0.00 0.00 2.39
3238 4219 9.412460 AGCTTCTAAATCAATGATCCAAACATA 57.588 29.630 0.00 0.00 0.00 2.29
3239 4220 8.195436 CAGCTTCTAAATCAATGATCCAAACAT 58.805 33.333 0.00 0.00 0.00 2.71
3240 4221 7.177216 ACAGCTTCTAAATCAATGATCCAAACA 59.823 33.333 0.00 0.00 0.00 2.83
3241 4222 7.542025 ACAGCTTCTAAATCAATGATCCAAAC 58.458 34.615 0.00 0.00 0.00 2.93
3242 4223 7.707624 ACAGCTTCTAAATCAATGATCCAAA 57.292 32.000 0.00 0.00 0.00 3.28
3243 4224 7.707624 AACAGCTTCTAAATCAATGATCCAA 57.292 32.000 0.00 0.00 0.00 3.53
3244 4225 7.707624 AAACAGCTTCTAAATCAATGATCCA 57.292 32.000 0.00 0.00 0.00 3.41
3245 4226 8.992835 AAAAACAGCTTCTAAATCAATGATCC 57.007 30.769 0.00 0.00 0.00 3.36
3269 4250 9.461312 ACTGGCTAACATACTCATGATTAAAAA 57.539 29.630 0.00 0.00 35.96 1.94
3270 4251 9.461312 AACTGGCTAACATACTCATGATTAAAA 57.539 29.630 0.00 0.00 35.96 1.52
3272 4253 9.764363 CTAACTGGCTAACATACTCATGATTAA 57.236 33.333 0.00 0.00 35.96 1.40
3273 4254 8.367911 CCTAACTGGCTAACATACTCATGATTA 58.632 37.037 0.00 0.00 35.96 1.75
3274 4255 7.220030 CCTAACTGGCTAACATACTCATGATT 58.780 38.462 0.00 0.00 35.96 2.57
3275 4256 6.763355 CCTAACTGGCTAACATACTCATGAT 58.237 40.000 0.00 0.00 35.96 2.45
3276 4257 6.161855 CCTAACTGGCTAACATACTCATGA 57.838 41.667 0.00 0.00 35.96 3.07
3291 4272 4.702131 AGAAAAACAGCTATGCCTAACTGG 59.298 41.667 4.72 0.00 34.40 4.00
3292 4273 5.886960 AGAAAAACAGCTATGCCTAACTG 57.113 39.130 0.00 0.00 36.22 3.16
3293 4274 6.003950 TCAAGAAAAACAGCTATGCCTAACT 58.996 36.000 0.00 0.00 0.00 2.24
3294 4275 6.254281 TCAAGAAAAACAGCTATGCCTAAC 57.746 37.500 0.00 0.00 0.00 2.34
3295 4276 6.658816 TGATCAAGAAAAACAGCTATGCCTAA 59.341 34.615 0.00 0.00 0.00 2.69
3296 4277 6.094048 GTGATCAAGAAAAACAGCTATGCCTA 59.906 38.462 0.00 0.00 0.00 3.93
3297 4278 5.012239 TGATCAAGAAAAACAGCTATGCCT 58.988 37.500 0.00 0.00 0.00 4.75
3298 4279 5.098211 GTGATCAAGAAAAACAGCTATGCC 58.902 41.667 0.00 0.00 0.00 4.40
3299 4280 5.947443 AGTGATCAAGAAAAACAGCTATGC 58.053 37.500 0.00 0.00 0.00 3.14
3300 4281 6.373774 AGGAGTGATCAAGAAAAACAGCTATG 59.626 38.462 0.00 0.00 0.00 2.23
3301 4282 6.373774 CAGGAGTGATCAAGAAAAACAGCTAT 59.626 38.462 0.00 0.00 0.00 2.97
3302 4283 5.702670 CAGGAGTGATCAAGAAAAACAGCTA 59.297 40.000 0.00 0.00 0.00 3.32
3303 4284 4.518211 CAGGAGTGATCAAGAAAAACAGCT 59.482 41.667 0.00 0.00 0.00 4.24
3304 4285 4.516698 TCAGGAGTGATCAAGAAAAACAGC 59.483 41.667 0.00 0.00 0.00 4.40
3305 4286 6.814506 ATCAGGAGTGATCAAGAAAAACAG 57.185 37.500 0.00 0.00 39.37 3.16
3306 4287 6.515531 GCAATCAGGAGTGATCAAGAAAAACA 60.516 38.462 0.00 0.00 43.04 2.83
3307 4288 5.860716 GCAATCAGGAGTGATCAAGAAAAAC 59.139 40.000 0.00 0.00 43.04 2.43
3308 4289 5.771666 AGCAATCAGGAGTGATCAAGAAAAA 59.228 36.000 0.00 0.00 43.04 1.94
3309 4290 5.319453 AGCAATCAGGAGTGATCAAGAAAA 58.681 37.500 0.00 0.00 43.04 2.29
3310 4291 4.914983 AGCAATCAGGAGTGATCAAGAAA 58.085 39.130 0.00 0.00 43.04 2.52
3311 4292 4.564782 AGCAATCAGGAGTGATCAAGAA 57.435 40.909 0.00 0.00 43.04 2.52
3312 4293 4.259356 CAAGCAATCAGGAGTGATCAAGA 58.741 43.478 0.00 0.00 43.04 3.02
3313 4294 3.377485 CCAAGCAATCAGGAGTGATCAAG 59.623 47.826 0.00 0.00 43.04 3.02
3314 4295 3.009363 TCCAAGCAATCAGGAGTGATCAA 59.991 43.478 0.00 0.00 43.04 2.57
3315 4296 2.573009 TCCAAGCAATCAGGAGTGATCA 59.427 45.455 0.28 0.00 43.04 2.92
3316 4297 2.941720 GTCCAAGCAATCAGGAGTGATC 59.058 50.000 0.28 0.00 43.04 2.92
3317 4298 2.356535 GGTCCAAGCAATCAGGAGTGAT 60.357 50.000 0.28 0.00 46.01 3.06
3318 4299 1.003580 GGTCCAAGCAATCAGGAGTGA 59.996 52.381 0.28 0.00 37.02 3.41
3319 4300 1.271543 TGGTCCAAGCAATCAGGAGTG 60.272 52.381 0.00 0.00 30.78 3.51
3320 4301 1.067295 TGGTCCAAGCAATCAGGAGT 58.933 50.000 0.00 0.00 30.78 3.85
3321 4302 2.431954 ATGGTCCAAGCAATCAGGAG 57.568 50.000 0.00 0.00 30.78 3.69
3322 4303 3.181440 GGATATGGTCCAAGCAATCAGGA 60.181 47.826 0.00 0.00 46.96 3.86
3323 4304 3.152341 GGATATGGTCCAAGCAATCAGG 58.848 50.000 0.00 0.00 46.96 3.86
3336 4317 8.446714 AAATGACTCTGAGATATGGATATGGT 57.553 34.615 12.44 0.00 0.00 3.55
3375 4356 3.434309 ACCCAAAGACCCAAAGATGATG 58.566 45.455 0.00 0.00 0.00 3.07
3381 4362 5.076873 TCTTTCATACCCAAAGACCCAAAG 58.923 41.667 0.00 0.00 35.40 2.77
3509 4492 4.069304 GTCATACTGTGCCCTACAAACAA 58.931 43.478 0.00 0.00 39.20 2.83
3604 4588 1.714794 AAGCATGCGACACAGAGTAC 58.285 50.000 13.01 0.00 0.00 2.73
3624 4608 5.220785 GTGCACACACATGGTACATGCAT 62.221 47.826 13.17 0.00 46.61 3.96
3711 4695 7.539712 TTTCTCGAATAACTCCATCATGAAC 57.460 36.000 0.00 0.00 0.00 3.18
3787 4771 2.625906 CGCCGACACACAACAGTG 59.374 61.111 0.00 0.00 44.93 3.66
4067 5052 7.839680 AGACCAAAATTCAGTGATTAGGTTT 57.160 32.000 0.00 0.00 31.57 3.27
4126 5111 6.426980 TTTGACATGAAGCTAGCATTACAG 57.573 37.500 18.83 4.55 0.00 2.74
4210 5195 1.954382 GGTTCCGTTTTTCAGAAGGCT 59.046 47.619 0.00 0.00 0.00 4.58
4243 5228 3.181476 ACAGGAATTGGACACAAAAGTGC 60.181 43.478 0.00 0.00 40.55 4.40
4257 5242 4.080582 TGGATCGGTTGTCATACAGGAATT 60.081 41.667 0.00 0.00 0.00 2.17
4267 5252 0.762418 AACCACTGGATCGGTTGTCA 59.238 50.000 0.71 0.00 43.88 3.58
4290 5275 9.253832 ACCATCCACACTTTGAAATAAATCATA 57.746 29.630 0.00 0.00 0.00 2.15
4298 5283 5.867903 TCAAACCATCCACACTTTGAAAT 57.132 34.783 0.00 0.00 31.31 2.17
4367 5352 5.123820 CCCATCAATTTTTCAGAGAACGCTA 59.876 40.000 0.00 0.00 0.00 4.26
4421 5406 4.670221 GCTTTATGAAAGAGCACAAGGACG 60.670 45.833 3.15 0.00 41.02 4.79
4423 5408 4.397420 TGCTTTATGAAAGAGCACAAGGA 58.603 39.130 3.15 0.00 41.15 3.36
4424 5409 4.456911 TCTGCTTTATGAAAGAGCACAAGG 59.543 41.667 3.15 0.00 41.15 3.61
4448 5433 6.229561 AGTCTCAAAACTTTAAGATGCGTC 57.770 37.500 0.00 0.00 0.00 5.19
4529 5514 3.633525 TCTGATGCATGCACCTAAAATCC 59.366 43.478 25.37 4.44 0.00 3.01
4576 5561 6.910536 TTTTGTGCCAATGAAACGTTAAAT 57.089 29.167 0.00 0.00 0.00 1.40
4668 5653 1.615392 GAGGCCAAAACTCTGCAACAT 59.385 47.619 5.01 0.00 32.28 2.71
4669 5654 1.032014 GAGGCCAAAACTCTGCAACA 58.968 50.000 5.01 0.00 32.28 3.33
4698 5683 4.156455 CCTGCACAGGGACAATTATAGT 57.844 45.455 8.93 0.00 44.87 2.12
4803 5788 0.326264 CTAAACCAGGCAGGAGCACT 59.674 55.000 1.67 0.00 44.61 4.40
4892 5878 4.568359 CCTCCTCAATCTGAAATACACACG 59.432 45.833 0.00 0.00 0.00 4.49
4920 5906 2.544685 CCTCCAGCAACATAGAAGACG 58.455 52.381 0.00 0.00 0.00 4.18
4929 5915 0.615331 CTAGAAGGCCTCCAGCAACA 59.385 55.000 5.23 0.00 46.50 3.33
5011 5997 7.733047 TGGAAATATATAGTCCAGCCTAGAACA 59.267 37.037 12.14 0.00 36.51 3.18
5103 6089 1.348036 GGAAGCCCCATTACGCTATCT 59.652 52.381 0.00 0.00 34.11 1.98
5139 6125 2.172293 GAGGGAATCCTTGATGAGCTGT 59.828 50.000 0.00 0.00 45.05 4.40
5169 6155 5.449177 GCTTAGTTCGGAAATTTGCAGCTAT 60.449 40.000 10.49 0.00 0.00 2.97
5198 6184 2.225068 AAGAGATATCCACAACGCCG 57.775 50.000 0.00 0.00 0.00 6.46
5204 6190 9.958180 TGATTTTCTAACAAAGAGATATCCACA 57.042 29.630 0.00 0.00 35.05 4.17
5216 6202 9.677567 GCACAAGAATAGTGATTTTCTAACAAA 57.322 29.630 0.00 0.00 39.30 2.83
5222 6208 7.229306 TGTTCAGCACAAGAATAGTGATTTTCT 59.771 33.333 0.00 0.00 39.30 2.52
5265 6251 2.827921 GTCCACTCCATTTGCCAGAAAT 59.172 45.455 0.00 0.00 0.00 2.17
5300 6293 2.320781 AGTTGGTATAGCGAGGCTGAT 58.679 47.619 0.00 0.00 40.10 2.90
5343 6336 2.440409 CCACCAAGAGGAATTCAGTGG 58.560 52.381 7.93 10.47 37.38 4.00
5465 6460 3.599412 ACGCACATACGTTTGGTCT 57.401 47.368 10.79 0.00 45.75 3.85
5474 6469 2.029728 GCAGAACAGATGACGCACATAC 59.970 50.000 0.00 0.00 39.56 2.39
5494 6489 3.859443 CTGGTCTCCTGATATAGCATGC 58.141 50.000 10.51 10.51 0.00 4.06
5496 6491 2.495270 CGCTGGTCTCCTGATATAGCAT 59.505 50.000 0.00 0.00 0.00 3.79
5497 6492 1.889170 CGCTGGTCTCCTGATATAGCA 59.111 52.381 0.00 0.00 0.00 3.49
5498 6493 2.163412 CTCGCTGGTCTCCTGATATAGC 59.837 54.545 0.00 0.00 0.00 2.97
5499 6494 3.417101 ACTCGCTGGTCTCCTGATATAG 58.583 50.000 0.00 0.00 0.00 1.31
5501 6496 2.363680 CAACTCGCTGGTCTCCTGATAT 59.636 50.000 0.00 0.00 0.00 1.63
5518 6514 1.064758 TCATAGCCCCAATTCGCAACT 60.065 47.619 0.00 0.00 0.00 3.16
5555 6555 2.092914 AGAAAAGTTGGGCCTATCCTCG 60.093 50.000 4.53 0.00 34.39 4.63
5600 6605 1.328279 AAACCTAGTTGCTTGGTGCC 58.672 50.000 3.28 0.00 38.53 5.01
5749 6754 6.994496 TGAAGATTAGCATGGACTATTCAAGG 59.006 38.462 0.00 0.00 0.00 3.61
5784 6790 3.976015 AGGAACAAGACCAGACCAAAAA 58.024 40.909 0.00 0.00 0.00 1.94
5808 6815 5.872617 ACACGCTGTAGCATGTTAAAAGATA 59.127 36.000 0.00 0.00 45.89 1.98
5812 6819 3.608241 GCACACGCTGTAGCATGTTAAAA 60.608 43.478 2.48 0.00 45.89 1.52
5813 6820 2.095969 GCACACGCTGTAGCATGTTAAA 60.096 45.455 2.48 0.00 45.89 1.52
5838 6845 3.927142 CAGACTAAGCAACCTTTCTACCG 59.073 47.826 0.00 0.00 32.47 4.02
5877 6907 7.921786 TTATCAGTAATTTTGTCAGACCCAG 57.078 36.000 0.00 0.00 0.00 4.45
5908 6938 4.154195 CGTTCCACTTATTTTGGGACAGAG 59.846 45.833 0.84 0.00 42.25 3.35
5911 6941 4.088056 TCGTTCCACTTATTTTGGGACA 57.912 40.909 0.84 0.00 42.25 4.02
5919 6949 7.272037 ACTTTGTGATTTCGTTCCACTTATT 57.728 32.000 0.00 0.00 0.00 1.40
5920 6950 6.877611 ACTTTGTGATTTCGTTCCACTTAT 57.122 33.333 0.00 0.00 0.00 1.73
5921 6951 6.316640 TCAACTTTGTGATTTCGTTCCACTTA 59.683 34.615 0.00 0.00 0.00 2.24
5922 6952 5.124776 TCAACTTTGTGATTTCGTTCCACTT 59.875 36.000 0.00 0.00 0.00 3.16
5923 6953 4.638421 TCAACTTTGTGATTTCGTTCCACT 59.362 37.500 0.00 0.00 0.00 4.00
5936 6966 7.011389 TCACAGAATAAGTGTCTCAACTTTGTG 59.989 37.037 10.96 10.96 41.85 3.33
5977 7007 9.964354 ATACATACAGGGTATTACTACGATACA 57.036 33.333 0.00 0.00 32.80 2.29
6053 7084 9.705290 ATTATTATTTTGCAGGAAAACTTTCGT 57.295 25.926 1.35 0.00 36.35 3.85
6090 7123 5.014123 ACTCCAGACACTTATTTTGGATGGA 59.986 40.000 0.00 0.00 37.32 3.41
6092 7125 6.316390 GGTACTCCAGACACTTATTTTGGATG 59.684 42.308 0.00 0.00 37.32 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.