Multiple sequence alignment - TraesCS4B01G234400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G234400 chr4B 100.000 4801 0 0 1 4801 488693262 488698062 0.000000e+00 8866.0
1 TraesCS4B01G234400 chr4B 85.616 292 36 4 1150 1441 534068490 534068775 7.810000e-78 302.0
2 TraesCS4B01G234400 chr4B 84.512 297 40 4 1150 1446 414689253 414689543 6.080000e-74 289.0
3 TraesCS4B01G234400 chr4B 93.023 86 6 0 1621 1706 515115735 515115820 5.040000e-25 126.0
4 TraesCS4B01G234400 chr4D 93.373 2369 125 11 1702 4066 396741270 396743610 0.000000e+00 3476.0
5 TraesCS4B01G234400 chr4D 89.583 816 48 17 820 1623 396740484 396741274 0.000000e+00 1002.0
6 TraesCS4B01G234400 chr4D 93.450 458 27 3 4345 4801 396745415 396745870 0.000000e+00 676.0
7 TraesCS4B01G234400 chr4D 91.721 459 35 3 4345 4801 73308107 73307650 6.780000e-178 634.0
8 TraesCS4B01G234400 chr4D 91.721 459 35 3 4345 4801 505233935 505234392 6.780000e-178 634.0
9 TraesCS4B01G234400 chr4D 86.253 451 50 8 4069 4517 305137980 305137540 3.360000e-131 479.0
10 TraesCS4B01G234400 chr4D 93.561 264 16 1 4069 4331 396745186 396745449 4.500000e-105 392.0
11 TraesCS4B01G234400 chr4D 85.185 297 38 4 1150 1446 196641606 196641896 2.810000e-77 300.0
12 TraesCS4B01G234400 chr4D 87.879 264 21 9 1 259 396740235 396740492 2.810000e-77 300.0
13 TraesCS4B01G234400 chr4D 84.512 297 40 4 1150 1446 144438565 144438855 6.080000e-74 289.0
14 TraesCS4B01G234400 chr4D 92.135 89 7 0 1622 1710 379147194 379147282 5.040000e-25 126.0
15 TraesCS4B01G234400 chr4D 93.023 86 6 0 1621 1706 418772500 418772415 5.040000e-25 126.0
16 TraesCS4B01G234400 chr4A 92.478 1223 74 10 1706 2920 78250956 78252168 0.000000e+00 1733.0
17 TraesCS4B01G234400 chr4A 92.315 1106 61 9 2964 4066 78252165 78253249 0.000000e+00 1550.0
18 TraesCS4B01G234400 chr4A 90.482 788 54 13 772 1552 78250126 78250899 0.000000e+00 1020.0
19 TraesCS4B01G234400 chr4A 85.106 141 19 2 336 476 78249782 78249920 5.010000e-30 143.0
20 TraesCS4B01G234400 chr1D 91.939 459 34 3 4345 4801 345894452 345894909 1.460000e-179 640.0
21 TraesCS4B01G234400 chr1D 96.429 84 2 1 783 866 329729207 329729125 2.330000e-28 137.0
22 TraesCS4B01G234400 chr1D 93.023 86 6 0 1622 1707 209139277 209139362 5.040000e-25 126.0
23 TraesCS4B01G234400 chr1D 92.941 85 6 0 1622 1706 469154001 469153917 1.810000e-24 124.0
24 TraesCS4B01G234400 chr1D 91.111 90 8 0 1617 1706 42391714 42391803 6.530000e-24 122.0
25 TraesCS4B01G234400 chr1D 91.111 90 7 1 1617 1706 29891904 29891816 2.350000e-23 121.0
26 TraesCS4B01G234400 chr1D 91.111 90 6 2 1619 1706 394271112 394271201 2.350000e-23 121.0
27 TraesCS4B01G234400 chr1D 91.011 89 7 1 1622 1709 46311331 46311243 8.440000e-23 119.0
28 TraesCS4B01G234400 chr1D 94.805 77 3 1 784 860 480352099 480352024 8.440000e-23 119.0
29 TraesCS4B01G234400 chr1D 88.421 95 10 1 1617 1710 347215302 347215396 3.930000e-21 113.0
30 TraesCS4B01G234400 chr1D 86.275 102 14 0 1621 1722 64145524 64145423 1.410000e-20 111.0
31 TraesCS4B01G234400 chr1D 93.878 49 2 1 775 823 140850930 140850883 6.670000e-09 73.1
32 TraesCS4B01G234400 chr7D 91.703 458 36 2 4345 4801 166469228 166469684 6.780000e-178 634.0
33 TraesCS4B01G234400 chr7D 91.503 459 36 3 4345 4801 529480909 529480452 3.150000e-176 628.0
34 TraesCS4B01G234400 chr1A 91.721 459 34 4 4345 4801 494823265 494823721 6.780000e-178 634.0
35 TraesCS4B01G234400 chr1A 85.374 294 37 4 1153 1446 272314603 272314316 2.810000e-77 300.0
36 TraesCS4B01G234400 chr1A 98.701 77 1 0 783 859 426886304 426886228 2.330000e-28 137.0
37 TraesCS4B01G234400 chr1A 94.872 78 3 1 783 860 576619436 576619360 2.350000e-23 121.0
38 TraesCS4B01G234400 chr2D 91.503 459 35 4 4345 4801 641983805 641984261 3.150000e-176 628.0
39 TraesCS4B01G234400 chr2D 94.118 85 5 0 1622 1706 302248013 302248097 3.900000e-26 130.0
40 TraesCS4B01G234400 chr2D 93.182 88 6 0 1619 1706 382455937 382456024 3.900000e-26 130.0
41 TraesCS4B01G234400 chr2A 91.485 458 37 2 4345 4801 777317590 777317134 3.150000e-176 628.0
42 TraesCS4B01G234400 chr2A 93.561 264 16 1 4069 4331 777317819 777317556 4.500000e-105 392.0
43 TraesCS4B01G234400 chr2A 86.054 294 35 5 1153 1446 404682399 404682112 1.300000e-80 311.0
44 TraesCS4B01G234400 chr5A 84.279 458 48 10 2203 2652 601607737 601608178 4.440000e-115 425.0
45 TraesCS4B01G234400 chr5A 94.382 89 5 0 1618 1706 429750432 429750520 2.330000e-28 137.0
46 TraesCS4B01G234400 chr5A 89.130 92 5 1 2657 2743 705382709 705382618 5.080000e-20 110.0
47 TraesCS4B01G234400 chr6A 83.726 467 52 10 2200 2658 203223509 203223959 2.070000e-113 420.0
48 TraesCS4B01G234400 chr6A 85.756 344 43 6 1150 1493 203223169 203223506 4.570000e-95 359.0
49 TraesCS4B01G234400 chr6A 84.880 291 38 4 1150 1440 173598717 173599001 6.080000e-74 289.0
50 TraesCS4B01G234400 chr6A 92.045 88 7 0 1622 1709 1761680 1761593 1.810000e-24 124.0
51 TraesCS4B01G234400 chr6A 90.217 92 9 0 1622 1713 40525460 40525369 2.350000e-23 121.0
52 TraesCS4B01G234400 chrUn 93.511 262 16 1 4069 4329 67009178 67009439 5.830000e-104 388.0
53 TraesCS4B01G234400 chrUn 93.511 262 16 1 4069 4329 171268087 171267826 5.830000e-104 388.0
54 TraesCS4B01G234400 chrUn 93.511 262 16 1 4069 4329 406638993 406638732 5.830000e-104 388.0
55 TraesCS4B01G234400 chrUn 93.511 262 16 1 4069 4329 406671355 406671094 5.830000e-104 388.0
56 TraesCS4B01G234400 chrUn 93.511 262 16 1 4069 4329 408104718 408104979 5.830000e-104 388.0
57 TraesCS4B01G234400 chrUn 93.511 262 16 1 4069 4329 463864179 463864440 5.830000e-104 388.0
58 TraesCS4B01G234400 chrUn 91.765 85 7 0 1622 1706 83668104 83668020 8.440000e-23 119.0
59 TraesCS4B01G234400 chrUn 88.172 93 9 2 1615 1707 35125969 35125879 5.080000e-20 110.0
60 TraesCS4B01G234400 chrUn 88.636 88 10 0 1618 1705 37403238 37403325 1.830000e-19 108.0
61 TraesCS4B01G234400 chrUn 89.412 85 9 0 1622 1706 55723696 55723612 1.830000e-19 108.0
62 TraesCS4B01G234400 chrUn 87.640 89 11 0 1622 1710 29814051 29813963 2.360000e-18 104.0
63 TraesCS4B01G234400 chrUn 87.097 93 10 2 1615 1707 35764387 35764477 2.360000e-18 104.0
64 TraesCS4B01G234400 chrUn 87.778 90 10 1 1618 1706 67407117 67407028 2.360000e-18 104.0
65 TraesCS4B01G234400 chrUn 87.097 93 10 2 1615 1707 309684645 309684555 2.360000e-18 104.0
66 TraesCS4B01G234400 chrUn 87.209 86 11 0 1621 1706 2693229 2693314 1.100000e-16 99.0
67 TraesCS4B01G234400 chr5B 81.538 455 54 12 2200 2650 106273847 106274275 9.890000e-92 348.0
68 TraesCS4B01G234400 chr5B 97.297 74 2 0 783 856 13364621 13364694 5.040000e-25 126.0
69 TraesCS4B01G234400 chr5B 91.209 91 6 2 766 856 5102025 5102113 6.530000e-24 122.0
70 TraesCS4B01G234400 chr5B 94.805 77 4 0 780 856 687389451 687389375 2.350000e-23 121.0
71 TraesCS4B01G234400 chr7B 80.846 449 57 13 2200 2645 433802935 433803357 4.630000e-85 326.0
72 TraesCS4B01G234400 chr3A 83.673 343 46 8 1152 1493 282156849 282157182 1.000000e-81 315.0
73 TraesCS4B01G234400 chr3A 82.692 364 43 10 2200 2557 493647200 493646851 6.040000e-79 305.0
74 TraesCS4B01G234400 chr3A 79.467 375 46 12 2200 2570 282157185 282157532 2.230000e-58 237.0
75 TraesCS4B01G234400 chr2B 89.683 252 19 4 2401 2648 406109038 406108790 1.000000e-81 315.0
76 TraesCS4B01G234400 chr2B 85.223 291 37 4 1150 1440 626801720 626802004 1.310000e-75 294.0
77 TraesCS4B01G234400 chr2B 85.259 251 18 5 2401 2648 270740815 270740581 1.730000e-59 241.0
78 TraesCS4B01G234400 chr1B 82.609 207 33 1 1153 1359 299548559 299548356 3.820000e-41 180.0
79 TraesCS4B01G234400 chr1B 98.684 76 1 0 784 859 444686415 444686340 8.380000e-28 135.0
80 TraesCS4B01G234400 chr1B 94.872 78 3 1 783 860 668666054 668665978 2.350000e-23 121.0
81 TraesCS4B01G234400 chr3D 94.186 86 5 0 1622 1707 66523463 66523378 1.080000e-26 132.0
82 TraesCS4B01G234400 chr6B 92.222 90 7 0 1618 1707 646750055 646750144 1.400000e-25 128.0
83 TraesCS4B01G234400 chr5D 97.297 74 2 0 783 856 13999677 13999750 5.040000e-25 126.0
84 TraesCS4B01G234400 chr5D 90.625 96 8 1 1622 1716 434549396 434549301 5.040000e-25 126.0
85 TraesCS4B01G234400 chr5D 90.909 88 8 0 1622 1709 132477854 132477767 8.440000e-23 119.0
86 TraesCS4B01G234400 chr6D 92.045 88 7 0 1622 1709 199210412 199210325 1.810000e-24 124.0
87 TraesCS4B01G234400 chr6D 92.941 85 6 0 1622 1706 283795770 283795854 1.810000e-24 124.0
88 TraesCS4B01G234400 chr6D 91.304 92 3 4 1622 1710 27848392 27848303 2.350000e-23 121.0
89 TraesCS4B01G234400 chr6D 87.037 108 10 4 1622 1728 403969123 403969227 8.440000e-23 119.0
90 TraesCS4B01G234400 chr6D 87.755 98 12 0 1613 1710 36472025 36472122 1.090000e-21 115.0
91 TraesCS4B01G234400 chr6D 87.379 103 9 3 1621 1722 113614071 113614170 1.090000e-21 115.0
92 TraesCS4B01G234400 chr6D 95.238 42 2 0 789 830 234975543 234975584 3.100000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G234400 chr4B 488693262 488698062 4800 False 8866.0 8866 100.00000 1 4801 1 chr4B.!!$F2 4800
1 TraesCS4B01G234400 chr4D 396740235 396745870 5635 False 1169.2 3476 91.56920 1 4801 5 chr4D.!!$F5 4800
2 TraesCS4B01G234400 chr4A 78249782 78253249 3467 False 1111.5 1733 90.09525 336 4066 4 chr4A.!!$F1 3730
3 TraesCS4B01G234400 chr2A 777317134 777317819 685 True 510.0 628 92.52300 4069 4801 2 chr2A.!!$R2 732
4 TraesCS4B01G234400 chr6A 203223169 203223959 790 False 389.5 420 84.74100 1150 2658 2 chr6A.!!$F2 1508
5 TraesCS4B01G234400 chr3A 282156849 282157532 683 False 276.0 315 81.57000 1152 2570 2 chr3A.!!$F1 1418

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
580 669 0.108041 GCCAAATCCCGACCGAACTA 60.108 55.0 0.00 0.00 0.00 2.24 F
1112 1213 0.253394 CCCCTTTCTCCCCCTCTCTT 60.253 60.0 0.00 0.00 0.00 2.85 F
1150 1251 0.401395 AGTCTTCCCCTGTCCACCAA 60.401 55.0 0.00 0.00 0.00 3.67 F
2375 2490 0.590682 TGCGCTACCACAAACATGTG 59.409 50.0 9.73 2.03 39.37 3.21 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1552 1657 0.036164 ATTGCTGTCGTTGCCTACCA 59.964 50.0 0.0 0.0 0.00 3.25 R
2946 3067 0.263765 TACTCCCTCCGCCCTGTATT 59.736 55.0 0.0 0.0 0.00 1.89 R
2951 3072 0.561680 AATACTACTCCCTCCGCCCT 59.438 55.0 0.0 0.0 0.00 5.19 R
4347 6045 1.015609 TGTGGTATCTCCTCAGGGGA 58.984 55.0 0.0 0.0 42.77 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.481954 GTCTCAGACGATGTTGGTAATTTT 57.518 37.500 0.00 0.00 0.00 1.82
30 31 6.899114 GTCTCAGACGATGTTGGTAATTTTT 58.101 36.000 0.00 0.00 0.00 1.94
71 72 9.683069 ATCATCAAACAATCTTACAAAACAGAC 57.317 29.630 0.00 0.00 0.00 3.51
72 73 8.134895 TCATCAAACAATCTTACAAAACAGACC 58.865 33.333 0.00 0.00 0.00 3.85
73 74 7.397892 TCAAACAATCTTACAAAACAGACCA 57.602 32.000 0.00 0.00 0.00 4.02
74 75 7.831753 TCAAACAATCTTACAAAACAGACCAA 58.168 30.769 0.00 0.00 0.00 3.67
75 76 8.307483 TCAAACAATCTTACAAAACAGACCAAA 58.693 29.630 0.00 0.00 0.00 3.28
76 77 8.930760 CAAACAATCTTACAAAACAGACCAAAA 58.069 29.630 0.00 0.00 0.00 2.44
77 78 9.495572 AAACAATCTTACAAAACAGACCAAAAA 57.504 25.926 0.00 0.00 0.00 1.94
98 99 6.635030 AAAAGCCTCAAGGTTAACTACAAG 57.365 37.500 5.42 0.00 34.29 3.16
99 100 4.976540 AGCCTCAAGGTTAACTACAAGT 57.023 40.909 5.42 0.00 37.57 3.16
100 101 6.429521 AAGCCTCAAGGTTAACTACAAGTA 57.570 37.500 5.42 0.00 37.57 2.24
101 102 6.038997 AGCCTCAAGGTTAACTACAAGTAG 57.961 41.667 5.42 5.72 37.06 2.57
102 103 5.778750 AGCCTCAAGGTTAACTACAAGTAGA 59.221 40.000 13.79 0.00 35.91 2.59
103 104 5.868258 GCCTCAAGGTTAACTACAAGTAGAC 59.132 44.000 13.79 2.22 35.91 2.59
104 105 6.517864 GCCTCAAGGTTAACTACAAGTAGACA 60.518 42.308 13.79 0.00 35.91 3.41
105 106 6.867293 CCTCAAGGTTAACTACAAGTAGACAC 59.133 42.308 13.79 6.88 36.97 3.67
106 107 6.752168 TCAAGGTTAACTACAAGTAGACACC 58.248 40.000 13.79 14.01 36.97 4.16
107 108 6.324512 TCAAGGTTAACTACAAGTAGACACCA 59.675 38.462 13.79 0.00 36.97 4.17
108 109 6.736110 AGGTTAACTACAAGTAGACACCAA 57.264 37.500 13.79 0.00 36.97 3.67
109 110 7.128234 AGGTTAACTACAAGTAGACACCAAA 57.872 36.000 13.79 0.00 36.97 3.28
110 111 7.567458 AGGTTAACTACAAGTAGACACCAAAA 58.433 34.615 13.79 0.00 36.97 2.44
111 112 8.048514 AGGTTAACTACAAGTAGACACCAAAAA 58.951 33.333 13.79 0.00 36.97 1.94
131 132 6.837471 AAAAACCCTACAAACAGTACAACA 57.163 33.333 0.00 0.00 0.00 3.33
132 133 6.837471 AAAACCCTACAAACAGTACAACAA 57.163 33.333 0.00 0.00 0.00 2.83
133 134 6.837471 AAACCCTACAAACAGTACAACAAA 57.163 33.333 0.00 0.00 0.00 2.83
134 135 6.445357 AACCCTACAAACAGTACAACAAAG 57.555 37.500 0.00 0.00 0.00 2.77
135 136 5.747342 ACCCTACAAACAGTACAACAAAGA 58.253 37.500 0.00 0.00 0.00 2.52
136 137 6.181908 ACCCTACAAACAGTACAACAAAGAA 58.818 36.000 0.00 0.00 0.00 2.52
137 138 6.094464 ACCCTACAAACAGTACAACAAAGAAC 59.906 38.462 0.00 0.00 0.00 3.01
138 139 6.094325 CCCTACAAACAGTACAACAAAGAACA 59.906 38.462 0.00 0.00 0.00 3.18
139 140 7.362229 CCCTACAAACAGTACAACAAAGAACAA 60.362 37.037 0.00 0.00 0.00 2.83
140 141 7.483691 CCTACAAACAGTACAACAAAGAACAAC 59.516 37.037 0.00 0.00 0.00 3.32
141 142 6.740110 ACAAACAGTACAACAAAGAACAACA 58.260 32.000 0.00 0.00 0.00 3.33
142 143 7.375053 ACAAACAGTACAACAAAGAACAACAT 58.625 30.769 0.00 0.00 0.00 2.71
143 144 8.516234 ACAAACAGTACAACAAAGAACAACATA 58.484 29.630 0.00 0.00 0.00 2.29
144 145 9.347934 CAAACAGTACAACAAAGAACAACATAA 57.652 29.630 0.00 0.00 0.00 1.90
145 146 9.915629 AAACAGTACAACAAAGAACAACATAAA 57.084 25.926 0.00 0.00 0.00 1.40
150 151 9.631639 GTACAACAAAGAACAACATAAATTTGC 57.368 29.630 0.00 0.00 32.30 3.68
151 152 8.491331 ACAACAAAGAACAACATAAATTTGCT 57.509 26.923 0.00 0.00 32.30 3.91
152 153 8.389603 ACAACAAAGAACAACATAAATTTGCTG 58.610 29.630 0.00 1.09 32.70 4.41
153 154 6.947258 ACAAAGAACAACATAAATTTGCTGC 58.053 32.000 0.00 0.00 32.30 5.25
154 155 6.018016 ACAAAGAACAACATAAATTTGCTGCC 60.018 34.615 0.00 0.00 32.30 4.85
155 156 5.212532 AGAACAACATAAATTTGCTGCCA 57.787 34.783 0.00 0.00 0.00 4.92
156 157 4.990426 AGAACAACATAAATTTGCTGCCAC 59.010 37.500 0.00 0.00 0.00 5.01
157 158 4.333913 ACAACATAAATTTGCTGCCACA 57.666 36.364 0.00 0.00 0.00 4.17
158 159 4.057432 ACAACATAAATTTGCTGCCACAC 58.943 39.130 0.00 0.00 0.00 3.82
159 160 4.202243 ACAACATAAATTTGCTGCCACACT 60.202 37.500 0.00 0.00 0.00 3.55
160 161 5.010516 ACAACATAAATTTGCTGCCACACTA 59.989 36.000 0.00 0.00 0.00 2.74
161 162 5.314923 ACATAAATTTGCTGCCACACTAG 57.685 39.130 0.00 0.00 0.00 2.57
162 163 4.158394 ACATAAATTTGCTGCCACACTAGG 59.842 41.667 0.00 0.00 0.00 3.02
163 164 2.584835 AATTTGCTGCCACACTAGGA 57.415 45.000 0.00 0.00 0.00 2.94
164 165 2.119801 ATTTGCTGCCACACTAGGAG 57.880 50.000 0.00 0.00 0.00 3.69
165 166 1.055849 TTTGCTGCCACACTAGGAGA 58.944 50.000 0.00 0.00 0.00 3.71
166 167 1.055849 TTGCTGCCACACTAGGAGAA 58.944 50.000 0.00 0.00 0.00 2.87
167 168 1.055849 TGCTGCCACACTAGGAGAAA 58.944 50.000 0.00 0.00 0.00 2.52
168 169 1.419762 TGCTGCCACACTAGGAGAAAA 59.580 47.619 0.00 0.00 0.00 2.29
169 170 2.158682 TGCTGCCACACTAGGAGAAAAA 60.159 45.455 0.00 0.00 0.00 1.94
190 191 6.926630 AAAAATTATAGGTTGAGCCCACAA 57.073 33.333 0.00 0.00 38.26 3.33
191 192 6.926630 AAAATTATAGGTTGAGCCCACAAA 57.073 33.333 0.00 0.00 38.26 2.83
192 193 6.926630 AAATTATAGGTTGAGCCCACAAAA 57.073 33.333 0.00 0.00 38.26 2.44
193 194 6.926630 AATTATAGGTTGAGCCCACAAAAA 57.073 33.333 0.00 0.00 38.26 1.94
194 195 7.494922 AATTATAGGTTGAGCCCACAAAAAT 57.505 32.000 0.00 0.00 38.26 1.82
195 196 6.926630 TTATAGGTTGAGCCCACAAAAATT 57.073 33.333 0.00 0.00 38.26 1.82
196 197 5.823861 ATAGGTTGAGCCCACAAAAATTT 57.176 34.783 0.00 0.00 38.26 1.82
197 198 3.807553 AGGTTGAGCCCACAAAAATTTG 58.192 40.909 4.40 4.40 40.11 2.32
198 199 3.199727 AGGTTGAGCCCACAAAAATTTGT 59.800 39.130 5.72 5.72 42.75 2.83
199 200 4.407296 AGGTTGAGCCCACAAAAATTTGTA 59.593 37.500 10.92 0.00 43.16 2.41
200 201 5.071653 AGGTTGAGCCCACAAAAATTTGTAT 59.928 36.000 10.92 0.00 43.16 2.29
201 202 6.963739 AGGTTGAGCCCACAAAAATTTGTATG 60.964 38.462 10.92 6.85 43.16 2.39
202 203 9.047928 AGGTTGAGCCCACAAAAATTTGTATGA 62.048 37.037 10.92 0.00 43.16 2.15
226 227 9.942850 TGAACAATCAATCTTACAGAATAGACA 57.057 29.630 0.00 0.00 30.99 3.41
241 242 9.442047 ACAGAATAGACATAAAAAGTCTCAAGG 57.558 33.333 0.00 0.00 44.70 3.61
242 243 9.658799 CAGAATAGACATAAAAAGTCTCAAGGA 57.341 33.333 0.00 0.00 44.70 3.36
287 288 9.726232 ACTACAAAACGAGTAAATTTTTCTTCC 57.274 29.630 0.00 0.00 0.00 3.46
288 289 9.724839 CTACAAAACGAGTAAATTTTTCTTCCA 57.275 29.630 0.00 0.00 0.00 3.53
289 290 8.402326 ACAAAACGAGTAAATTTTTCTTCCAC 57.598 30.769 0.00 0.00 0.00 4.02
290 291 8.030106 ACAAAACGAGTAAATTTTTCTTCCACA 58.970 29.630 0.00 0.00 0.00 4.17
291 292 7.980742 AAACGAGTAAATTTTTCTTCCACAC 57.019 32.000 0.00 0.00 0.00 3.82
292 293 6.937436 ACGAGTAAATTTTTCTTCCACACT 57.063 33.333 0.00 0.00 0.00 3.55
293 294 8.441312 AACGAGTAAATTTTTCTTCCACACTA 57.559 30.769 0.00 0.00 0.00 2.74
294 295 8.084590 ACGAGTAAATTTTTCTTCCACACTAG 57.915 34.615 0.00 0.00 0.00 2.57
295 296 7.172703 ACGAGTAAATTTTTCTTCCACACTAGG 59.827 37.037 0.00 0.00 0.00 3.02
296 297 7.386848 CGAGTAAATTTTTCTTCCACACTAGGA 59.613 37.037 0.00 0.00 35.41 2.94
297 298 8.622948 AGTAAATTTTTCTTCCACACTAGGAG 57.377 34.615 0.00 0.00 39.25 3.69
298 299 8.437575 AGTAAATTTTTCTTCCACACTAGGAGA 58.562 33.333 0.00 0.00 39.25 3.71
299 300 9.063615 GTAAATTTTTCTTCCACACTAGGAGAA 57.936 33.333 0.00 0.00 39.25 2.87
300 301 8.533569 AAATTTTTCTTCCACACTAGGAGAAA 57.466 30.769 0.00 0.00 39.25 2.52
301 302 8.533569 AATTTTTCTTCCACACTAGGAGAAAA 57.466 30.769 3.41 3.41 39.80 2.29
302 303 7.948034 TTTTTCTTCCACACTAGGAGAAAAA 57.052 32.000 13.23 13.23 43.16 1.94
303 304 8.533569 TTTTTCTTCCACACTAGGAGAAAAAT 57.466 30.769 13.23 0.00 42.15 1.82
304 305 9.635404 TTTTTCTTCCACACTAGGAGAAAAATA 57.365 29.630 13.23 0.00 42.15 1.40
305 306 9.807921 TTTTCTTCCACACTAGGAGAAAAATAT 57.192 29.630 4.82 0.00 39.28 1.28
354 355 3.328382 TGCTTTAACCGTCTGCTATGT 57.672 42.857 0.00 0.00 0.00 2.29
358 359 4.267928 GCTTTAACCGTCTGCTATGTACTG 59.732 45.833 0.00 0.00 0.00 2.74
392 393 3.312421 GGTCTGCGTTGTATATGCACAAT 59.688 43.478 0.00 0.00 43.72 2.71
403 404 7.719778 TGTATATGCACAATTCATCTCAGAC 57.280 36.000 0.00 0.00 0.00 3.51
404 405 5.919272 ATATGCACAATTCATCTCAGACG 57.081 39.130 0.00 0.00 0.00 4.18
406 407 2.995939 TGCACAATTCATCTCAGACGAC 59.004 45.455 0.00 0.00 0.00 4.34
411 412 3.850122 ATTCATCTCAGACGACGTTGA 57.150 42.857 10.51 7.27 0.00 3.18
412 413 3.636282 TTCATCTCAGACGACGTTGAA 57.364 42.857 10.51 4.10 0.00 2.69
413 414 2.929960 TCATCTCAGACGACGTTGAAC 58.070 47.619 10.51 3.26 0.00 3.18
414 415 2.292292 TCATCTCAGACGACGTTGAACA 59.708 45.455 10.51 0.00 0.00 3.18
415 416 2.855660 TCTCAGACGACGTTGAACAA 57.144 45.000 10.51 0.00 0.00 2.83
430 431 8.118893 ACGTTGAACAATTTTTCTTCATTCTG 57.881 30.769 5.95 0.00 0.00 3.02
445 446 9.825972 TTCTTCATTCTGAAATTATCGAACAAC 57.174 29.630 0.00 0.00 35.73 3.32
461 550 6.289834 TCGAACAACCTTACAAAATAGACCA 58.710 36.000 0.00 0.00 0.00 4.02
514 603 9.686683 AGGTCAAAACTTATATTACTGAAGCAT 57.313 29.630 0.00 0.00 0.00 3.79
521 610 9.632638 AACTTATATTACTGAAGCATCAACCAT 57.367 29.630 0.00 0.00 34.49 3.55
525 614 8.978874 ATATTACTGAAGCATCAACCATACAA 57.021 30.769 0.00 0.00 34.49 2.41
526 615 7.886629 ATTACTGAAGCATCAACCATACAAT 57.113 32.000 0.00 0.00 34.49 2.71
527 616 5.824904 ACTGAAGCATCAACCATACAATC 57.175 39.130 0.00 0.00 34.49 2.67
528 617 5.255687 ACTGAAGCATCAACCATACAATCA 58.744 37.500 0.00 0.00 34.49 2.57
529 618 5.889853 ACTGAAGCATCAACCATACAATCAT 59.110 36.000 0.00 0.00 34.49 2.45
530 619 6.379133 ACTGAAGCATCAACCATACAATCATT 59.621 34.615 0.00 0.00 34.49 2.57
531 620 6.798482 TGAAGCATCAACCATACAATCATTC 58.202 36.000 0.00 0.00 30.99 2.67
532 621 6.604396 TGAAGCATCAACCATACAATCATTCT 59.396 34.615 0.00 0.00 30.99 2.40
533 622 7.123098 TGAAGCATCAACCATACAATCATTCTT 59.877 33.333 0.00 0.00 30.99 2.52
534 623 8.523915 AAGCATCAACCATACAATCATTCTTA 57.476 30.769 0.00 0.00 0.00 2.10
535 624 7.934457 AGCATCAACCATACAATCATTCTTAC 58.066 34.615 0.00 0.00 0.00 2.34
536 625 7.557358 AGCATCAACCATACAATCATTCTTACA 59.443 33.333 0.00 0.00 0.00 2.41
537 626 8.355169 GCATCAACCATACAATCATTCTTACAT 58.645 33.333 0.00 0.00 0.00 2.29
560 649 9.388506 ACATAATAACTCAATGACTTCTTGGAG 57.611 33.333 0.00 0.00 0.00 3.86
561 650 8.834465 CATAATAACTCAATGACTTCTTGGAGG 58.166 37.037 0.00 0.00 0.00 4.30
562 651 3.064900 ACTCAATGACTTCTTGGAGGC 57.935 47.619 0.00 0.00 0.00 4.70
563 652 2.290577 ACTCAATGACTTCTTGGAGGCC 60.291 50.000 0.00 0.00 0.00 5.19
564 653 1.704628 TCAATGACTTCTTGGAGGCCA 59.295 47.619 5.01 0.00 0.00 5.36
565 654 2.108075 TCAATGACTTCTTGGAGGCCAA 59.892 45.455 5.01 0.00 41.69 4.52
566 655 2.892852 CAATGACTTCTTGGAGGCCAAA 59.107 45.455 5.01 0.00 43.44 3.28
567 656 2.978156 TGACTTCTTGGAGGCCAAAT 57.022 45.000 5.01 0.00 43.44 2.32
568 657 2.795329 TGACTTCTTGGAGGCCAAATC 58.205 47.619 5.01 0.00 43.44 2.17
569 658 2.095461 GACTTCTTGGAGGCCAAATCC 58.905 52.381 5.01 3.51 43.44 3.01
570 659 1.272704 ACTTCTTGGAGGCCAAATCCC 60.273 52.381 5.01 0.00 43.44 3.85
571 660 0.323360 TTCTTGGAGGCCAAATCCCG 60.323 55.000 5.01 0.00 43.44 5.14
572 661 1.204786 TCTTGGAGGCCAAATCCCGA 61.205 55.000 5.01 0.00 43.44 5.14
573 662 1.001393 TTGGAGGCCAAATCCCGAC 60.001 57.895 5.01 0.00 40.92 4.79
574 663 2.124278 GGAGGCCAAATCCCGACC 60.124 66.667 5.01 0.00 0.00 4.79
575 664 2.513897 GAGGCCAAATCCCGACCG 60.514 66.667 5.01 0.00 0.00 4.79
576 665 3.006728 AGGCCAAATCCCGACCGA 61.007 61.111 5.01 0.00 0.00 4.69
577 666 2.045731 GGCCAAATCCCGACCGAA 60.046 61.111 0.00 0.00 0.00 4.30
578 667 2.404186 GGCCAAATCCCGACCGAAC 61.404 63.158 0.00 0.00 0.00 3.95
579 668 1.376812 GCCAAATCCCGACCGAACT 60.377 57.895 0.00 0.00 0.00 3.01
580 669 0.108041 GCCAAATCCCGACCGAACTA 60.108 55.000 0.00 0.00 0.00 2.24
581 670 1.676615 GCCAAATCCCGACCGAACTAA 60.677 52.381 0.00 0.00 0.00 2.24
584 673 4.444536 CCAAATCCCGACCGAACTAAATA 58.555 43.478 0.00 0.00 0.00 1.40
591 680 5.354792 TCCCGACCGAACTAAATAAATTTGG 59.645 40.000 0.00 0.00 34.82 3.28
608 697 1.429930 TGGTGCCACACTAGGAGAAA 58.570 50.000 0.00 0.00 34.40 2.52
648 741 8.376203 CACACAAAAATTTGTATGAACGAACAA 58.624 29.630 10.93 0.00 45.74 2.83
659 752 8.239681 TGTATGAACGAACAATCTTACAGAAG 57.760 34.615 0.00 0.00 33.70 2.85
661 754 7.962964 ATGAACGAACAATCTTACAGAAGAA 57.037 32.000 0.00 0.00 44.85 2.52
665 758 5.469084 ACGAACAATCTTACAGAAGAAACCC 59.531 40.000 0.00 0.00 44.85 4.11
736 830 9.868277 ACGATTATATTTTTGATTTTTCTGCCA 57.132 25.926 0.00 0.00 0.00 4.92
740 834 7.671495 ATATTTTTGATTTTTCTGCCACACC 57.329 32.000 0.00 0.00 0.00 4.16
741 835 4.478206 TTTTGATTTTTCTGCCACACCA 57.522 36.364 0.00 0.00 0.00 4.17
742 836 3.731652 TTGATTTTTCTGCCACACCAG 57.268 42.857 0.00 0.00 0.00 4.00
743 837 1.962807 TGATTTTTCTGCCACACCAGG 59.037 47.619 0.00 0.00 33.64 4.45
744 838 2.238521 GATTTTTCTGCCACACCAGGA 58.761 47.619 0.00 0.00 33.64 3.86
745 839 1.691196 TTTTTCTGCCACACCAGGAG 58.309 50.000 0.00 0.00 33.64 3.69
746 840 0.843309 TTTTCTGCCACACCAGGAGA 59.157 50.000 0.00 0.00 33.64 3.71
747 841 0.843309 TTTCTGCCACACCAGGAGAA 59.157 50.000 0.00 0.00 33.64 2.87
748 842 0.843309 TTCTGCCACACCAGGAGAAA 59.157 50.000 0.00 0.00 33.64 2.52
749 843 0.843309 TCTGCCACACCAGGAGAAAA 59.157 50.000 0.00 0.00 33.64 2.29
750 844 1.214175 TCTGCCACACCAGGAGAAAAA 59.786 47.619 0.00 0.00 33.64 1.94
751 845 2.158475 TCTGCCACACCAGGAGAAAAAT 60.158 45.455 0.00 0.00 33.64 1.82
752 846 3.073798 TCTGCCACACCAGGAGAAAAATA 59.926 43.478 0.00 0.00 33.64 1.40
753 847 3.153919 TGCCACACCAGGAGAAAAATAC 58.846 45.455 0.00 0.00 0.00 1.89
754 848 3.153919 GCCACACCAGGAGAAAAATACA 58.846 45.455 0.00 0.00 0.00 2.29
755 849 3.572255 GCCACACCAGGAGAAAAATACAA 59.428 43.478 0.00 0.00 0.00 2.41
756 850 4.220602 GCCACACCAGGAGAAAAATACAAT 59.779 41.667 0.00 0.00 0.00 2.71
757 851 5.417580 GCCACACCAGGAGAAAAATACAATA 59.582 40.000 0.00 0.00 0.00 1.90
758 852 6.071616 GCCACACCAGGAGAAAAATACAATAA 60.072 38.462 0.00 0.00 0.00 1.40
759 853 7.524698 GCCACACCAGGAGAAAAATACAATAAA 60.525 37.037 0.00 0.00 0.00 1.40
760 854 8.531146 CCACACCAGGAGAAAAATACAATAAAT 58.469 33.333 0.00 0.00 0.00 1.40
761 855 9.927668 CACACCAGGAGAAAAATACAATAAATT 57.072 29.630 0.00 0.00 0.00 1.82
835 929 0.389426 GCTTAGGAAACGGACGCTCA 60.389 55.000 0.00 0.00 0.00 4.26
878 972 6.089417 CGCCTTTGTTGAAATAAAATCACTCC 59.911 38.462 0.00 0.00 0.00 3.85
883 977 7.972832 TGTTGAAATAAAATCACTCCGTACT 57.027 32.000 0.00 0.00 0.00 2.73
894 988 9.836076 AAAATCACTCCGTACTTTAATAAAAGC 57.164 29.630 0.00 0.00 45.06 3.51
935 1029 0.966920 TCACACCGGGTCTTCTCTTC 59.033 55.000 6.32 0.00 0.00 2.87
937 1031 0.969894 ACACCGGGTCTTCTCTTCAG 59.030 55.000 6.32 0.00 0.00 3.02
980 1081 3.824510 GGTCGTTTCGCTCGCGTC 61.825 66.667 5.77 0.00 40.74 5.19
981 1082 3.824510 GTCGTTTCGCTCGCGTCC 61.825 66.667 5.77 0.00 40.74 4.79
982 1083 4.034258 TCGTTTCGCTCGCGTCCT 62.034 61.111 5.77 0.00 40.74 3.85
1061 1162 1.134965 CCGCCTCCTCAAGTTCTACAG 60.135 57.143 0.00 0.00 0.00 2.74
1073 1174 3.588569 AGTTCTACAGTTTCCAGGTCCT 58.411 45.455 0.00 0.00 0.00 3.85
1102 1203 4.083862 AGTCGCCGCCCCTTTCTC 62.084 66.667 0.00 0.00 0.00 2.87
1108 1209 3.798511 CGCCCCTTTCTCCCCCTC 61.799 72.222 0.00 0.00 0.00 4.30
1109 1210 2.286502 GCCCCTTTCTCCCCCTCT 60.287 66.667 0.00 0.00 0.00 3.69
1112 1213 0.253394 CCCCTTTCTCCCCCTCTCTT 60.253 60.000 0.00 0.00 0.00 2.85
1113 1214 1.208706 CCCTTTCTCCCCCTCTCTTC 58.791 60.000 0.00 0.00 0.00 2.87
1114 1215 1.274126 CCCTTTCTCCCCCTCTCTTCT 60.274 57.143 0.00 0.00 0.00 2.85
1115 1216 2.556766 CCTTTCTCCCCCTCTCTTCTT 58.443 52.381 0.00 0.00 0.00 2.52
1117 1218 3.449918 CTTTCTCCCCCTCTCTTCTTCT 58.550 50.000 0.00 0.00 0.00 2.85
1118 1219 3.569135 TTCTCCCCCTCTCTTCTTCTT 57.431 47.619 0.00 0.00 0.00 2.52
1119 1220 3.108847 TCTCCCCCTCTCTTCTTCTTC 57.891 52.381 0.00 0.00 0.00 2.87
1120 1221 2.383683 TCTCCCCCTCTCTTCTTCTTCA 59.616 50.000 0.00 0.00 0.00 3.02
1121 1222 2.765699 CTCCCCCTCTCTTCTTCTTCAG 59.234 54.545 0.00 0.00 0.00 3.02
1122 1223 1.836802 CCCCCTCTCTTCTTCTTCAGG 59.163 57.143 0.00 0.00 0.00 3.86
1123 1224 1.209261 CCCCTCTCTTCTTCTTCAGGC 59.791 57.143 0.00 0.00 0.00 4.85
1124 1225 1.209261 CCCTCTCTTCTTCTTCAGGCC 59.791 57.143 0.00 0.00 0.00 5.19
1125 1226 1.209261 CCTCTCTTCTTCTTCAGGCCC 59.791 57.143 0.00 0.00 0.00 5.80
1130 1231 2.982488 TCTTCTTCTTCAGGCCCTCTTT 59.018 45.455 0.00 0.00 0.00 2.52
1138 1239 2.188817 TCAGGCCCTCTTTAGTCTTCC 58.811 52.381 0.00 0.00 0.00 3.46
1141 1242 1.585895 GCCCTCTTTAGTCTTCCCCT 58.414 55.000 0.00 0.00 0.00 4.79
1150 1251 0.401395 AGTCTTCCCCTGTCCACCAA 60.401 55.000 0.00 0.00 0.00 3.67
1158 1259 1.069765 CTGTCCACCAACTGCTCGT 59.930 57.895 0.00 0.00 0.00 4.18
1237 1338 6.202570 GCTTGATGAATTGCCTTAGAGACTAG 59.797 42.308 0.00 0.00 0.00 2.57
1251 1352 7.309867 CCTTAGAGACTAGGCTTTGTACTTTGA 60.310 40.741 0.00 0.00 0.00 2.69
1345 1446 1.726791 GCGTCTTCCAGTGTATGTGTG 59.273 52.381 0.00 0.00 0.00 3.82
1512 1617 4.591072 GTGAACCTTCTCCAGCTATCCTAT 59.409 45.833 0.00 0.00 0.00 2.57
1524 1629 4.645136 CAGCTATCCTATGCTAATCCGGTA 59.355 45.833 0.00 0.00 37.81 4.02
1528 1633 6.238703 GCTATCCTATGCTAATCCGGTAGTAC 60.239 46.154 0.00 0.00 0.00 2.73
1534 1639 8.784994 CCTATGCTAATCCGGTAGTACTATATG 58.215 40.741 5.75 0.00 0.00 1.78
1558 1663 2.947448 GCAAAAGGCAGAATGGTAGG 57.053 50.000 0.00 0.00 43.97 3.18
1559 1664 1.134995 GCAAAAGGCAGAATGGTAGGC 60.135 52.381 0.00 0.00 43.97 3.93
1562 1667 1.839424 AAGGCAGAATGGTAGGCAAC 58.161 50.000 0.00 0.00 35.86 4.17
1582 1687 2.948979 ACGACAGCAATGAACAAGGAAA 59.051 40.909 0.00 0.00 0.00 3.13
1593 1698 7.799914 GCAATGAACAAGGAAATTTGAAATGTC 59.200 33.333 0.00 0.00 0.00 3.06
1601 1706 9.048446 CAAGGAAATTTGAAATGTCTGTCAATT 57.952 29.630 7.92 0.00 33.90 2.32
1628 1734 7.607615 TTGTAAACAGACTAAACTACTCCCT 57.392 36.000 0.00 0.00 0.00 4.20
1629 1735 7.224522 TGTAAACAGACTAAACTACTCCCTC 57.775 40.000 0.00 0.00 0.00 4.30
1630 1736 5.388408 AAACAGACTAAACTACTCCCTCG 57.612 43.478 0.00 0.00 0.00 4.63
1631 1737 3.354467 ACAGACTAAACTACTCCCTCGG 58.646 50.000 0.00 0.00 0.00 4.63
1632 1738 3.245193 ACAGACTAAACTACTCCCTCGGT 60.245 47.826 0.00 0.00 0.00 4.69
1633 1739 4.018960 ACAGACTAAACTACTCCCTCGGTA 60.019 45.833 0.00 0.00 0.00 4.02
1634 1740 4.946157 CAGACTAAACTACTCCCTCGGTAA 59.054 45.833 0.00 0.00 0.00 2.85
1635 1741 5.416952 CAGACTAAACTACTCCCTCGGTAAA 59.583 44.000 0.00 0.00 0.00 2.01
1636 1742 5.651576 AGACTAAACTACTCCCTCGGTAAAG 59.348 44.000 0.00 0.00 0.00 1.85
1637 1743 5.574188 ACTAAACTACTCCCTCGGTAAAGA 58.426 41.667 0.00 0.00 0.00 2.52
1638 1744 6.012745 ACTAAACTACTCCCTCGGTAAAGAA 58.987 40.000 0.00 0.00 0.00 2.52
1639 1745 5.813513 AAACTACTCCCTCGGTAAAGAAA 57.186 39.130 0.00 0.00 0.00 2.52
1640 1746 6.370186 AAACTACTCCCTCGGTAAAGAAAT 57.630 37.500 0.00 0.00 0.00 2.17
1641 1747 7.486407 AAACTACTCCCTCGGTAAAGAAATA 57.514 36.000 0.00 0.00 0.00 1.40
1642 1748 7.672122 AACTACTCCCTCGGTAAAGAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
1643 1749 8.773033 AACTACTCCCTCGGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
1644 1750 8.773033 ACTACTCCCTCGGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
1645 1751 8.858094 ACTACTCCCTCGGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
1646 1752 7.909485 ACTCCCTCGGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
1647 1753 7.724287 ACTCCCTCGGTAAAGAAATATAAGAC 58.276 38.462 0.00 0.00 0.00 3.01
1648 1754 7.059202 TCCCTCGGTAAAGAAATATAAGACC 57.941 40.000 0.00 0.00 0.00 3.85
1650 1756 6.462067 CCCTCGGTAAAGAAATATAAGACCGT 60.462 42.308 10.05 0.00 46.44 4.83
1651 1757 6.982724 CCTCGGTAAAGAAATATAAGACCGTT 59.017 38.462 10.05 0.00 46.44 4.44
1652 1758 7.493645 CCTCGGTAAAGAAATATAAGACCGTTT 59.506 37.037 10.05 0.00 46.44 3.60
1653 1759 9.520204 CTCGGTAAAGAAATATAAGACCGTTTA 57.480 33.333 10.05 0.00 46.44 2.01
1654 1760 9.520204 TCGGTAAAGAAATATAAGACCGTTTAG 57.480 33.333 10.05 0.00 46.44 1.85
1655 1761 8.758715 CGGTAAAGAAATATAAGACCGTTTAGG 58.241 37.037 2.49 0.00 42.55 2.69
1751 1857 7.056635 TCAGAAATCTTTTTGAAGGAGAGTGT 58.943 34.615 0.00 0.00 29.61 3.55
1859 1966 8.617290 AAGTCGGAAACAACTGAATTATTAGT 57.383 30.769 0.00 0.00 32.85 2.24
1906 2013 2.871453 TGAACTGTAAGGGGGAAAAGC 58.129 47.619 0.00 0.00 39.30 3.51
2053 2160 4.857130 GGTAACTTAACTCCTTCCCCAT 57.143 45.455 0.00 0.00 0.00 4.00
2160 2267 4.515191 ACGTTCAGTGTGTTATCATGCTTT 59.485 37.500 0.00 0.00 0.00 3.51
2163 2270 3.120234 TCAGTGTGTTATCATGCTTTGCG 60.120 43.478 0.00 0.00 0.00 4.85
2193 2300 6.387465 TGAAATGTTTCGGTACAGAGTCTAG 58.613 40.000 0.00 0.00 40.01 2.43
2225 2332 5.294552 GGTGGCTGTTTATCTCATTACTGTC 59.705 44.000 0.00 0.00 0.00 3.51
2240 2347 5.961395 TTACTGTCGTTCTTTCAGTTCAC 57.039 39.130 2.52 0.00 41.66 3.18
2246 2353 5.010719 TGTCGTTCTTTCAGTTCACTATCCT 59.989 40.000 0.00 0.00 0.00 3.24
2295 2404 7.624360 ATTCCGTATTTCTAGTGCAAATTCA 57.376 32.000 0.00 0.00 0.00 2.57
2374 2489 0.874390 CTGCGCTACCACAAACATGT 59.126 50.000 9.73 0.00 0.00 3.21
2375 2490 0.590682 TGCGCTACCACAAACATGTG 59.409 50.000 9.73 2.03 39.37 3.21
2388 2503 6.035542 CCACAAACATGTGTTCCTTTTTACAC 59.964 38.462 0.00 0.00 43.76 2.90
2393 2508 7.833285 ACATGTGTTCCTTTTTACACCTAAT 57.167 32.000 0.00 0.00 43.04 1.73
2419 2534 8.587608 TGCTTGGTGAATTATTCATCTTCTTTT 58.412 29.630 17.67 0.00 41.40 2.27
2936 3056 5.346281 GCATGTAGCTAGATACATCCGTTTC 59.654 44.000 26.69 10.89 43.01 2.78
2937 3057 6.682746 CATGTAGCTAGATACATCCGTTTCT 58.317 40.000 26.69 5.82 43.01 2.52
2938 3058 6.315091 TGTAGCTAGATACATCCGTTTCTC 57.685 41.667 16.66 0.00 35.40 2.87
2939 3059 4.491234 AGCTAGATACATCCGTTTCTCG 57.509 45.455 0.00 0.00 35.40 4.04
2940 3060 3.884091 AGCTAGATACATCCGTTTCTCGT 59.116 43.478 0.00 0.00 35.40 4.18
2941 3061 4.023878 AGCTAGATACATCCGTTTCTCGTC 60.024 45.833 0.00 0.00 35.40 4.20
2946 3067 6.802608 AGATACATCCGTTTCTCGTCAATTA 58.197 36.000 0.00 0.00 37.94 1.40
2951 3072 6.814644 ACATCCGTTTCTCGTCAATTAATACA 59.185 34.615 0.00 0.00 37.94 2.29
2956 3077 3.713288 TCTCGTCAATTAATACAGGGCG 58.287 45.455 0.00 0.00 0.00 6.13
3127 3248 4.033709 AGCATTAGTGTCCTGTAGTCCAT 58.966 43.478 0.00 0.00 0.00 3.41
3218 3339 5.012354 ACCTGTTAAAAGAGGGTCGATAACA 59.988 40.000 10.36 0.00 43.41 2.41
3274 3395 4.151883 TGAGAACTTTTGGAATGGAAGGG 58.848 43.478 0.00 0.00 0.00 3.95
3315 3436 6.173339 CCTGAATAAACTCTAAACCTGCTGA 58.827 40.000 0.00 0.00 0.00 4.26
3354 3475 2.065470 CTCCATGGCTCCATCCCCTG 62.065 65.000 6.96 0.00 33.90 4.45
3358 3479 2.004408 ATGGCTCCATCCCCTGCTTC 62.004 60.000 0.00 0.00 29.42 3.86
3387 3508 3.576550 TGTCTACACCATGTAACTGCTGA 59.423 43.478 0.00 0.00 31.67 4.26
3391 3512 2.634940 ACACCATGTAACTGCTGAGAGT 59.365 45.455 0.00 0.00 0.00 3.24
3392 3513 3.832490 ACACCATGTAACTGCTGAGAGTA 59.168 43.478 0.00 0.00 0.00 2.59
3439 3560 7.287229 GTTCTTTCTTTTCAGAGTTCAGATCG 58.713 38.462 0.00 0.00 0.00 3.69
3460 3581 3.753272 CGAACTCCAATGGTTCATCAACT 59.247 43.478 0.00 0.00 41.99 3.16
3570 3691 2.796032 GCAGCTTCACACAGTTTTGGAC 60.796 50.000 0.00 0.00 0.00 4.02
3626 3747 9.768662 AACAAGTTCAGAGCAAATAATGAAATT 57.231 25.926 0.00 0.00 39.66 1.82
3690 3811 5.362556 ACTGCCATATCATTTATTCACGC 57.637 39.130 0.00 0.00 0.00 5.34
3704 3825 0.318529 TCACGCGCATGTGCAATTTT 60.319 45.000 29.19 6.30 42.21 1.82
3717 3838 5.339177 TGTGCAATTTTATAACAGCGATGG 58.661 37.500 5.32 0.00 0.00 3.51
3802 3923 1.467342 GGAGCGTTTCAGCCGTTAAAT 59.533 47.619 0.00 0.00 38.01 1.40
3855 3976 6.469782 TTGGAGACTTGAGCAAAAGAAATT 57.530 33.333 5.50 0.00 0.00 1.82
4006 4130 1.067425 TGAAATGTGAAGCTGGCATGC 60.067 47.619 9.90 9.90 0.00 4.06
4066 4190 8.614346 CAGTTGGAGTACTAGTCTAGTTATGTC 58.386 40.741 17.59 9.24 40.14 3.06
4078 5775 5.862860 GTCTAGTTATGTCGCCCTTATTAGC 59.137 44.000 0.00 0.00 0.00 3.09
4101 5798 8.331730 AGCGTTTTGTACCTATTTGAAATACT 57.668 30.769 0.00 0.00 0.00 2.12
4185 5882 2.345991 GGCTGGCCACGTAGAACA 59.654 61.111 0.00 0.00 35.81 3.18
4186 5883 1.741770 GGCTGGCCACGTAGAACAG 60.742 63.158 0.00 0.00 35.81 3.16
4225 5923 5.358298 AAAGAGGTGTTTAATTGTCTCGC 57.642 39.130 0.00 0.00 0.00 5.03
4268 5966 2.703536 TCTTACTTCCTGACCAGTTGCA 59.296 45.455 0.00 0.00 0.00 4.08
4270 5968 2.664402 ACTTCCTGACCAGTTGCATT 57.336 45.000 0.00 0.00 0.00 3.56
4271 5969 3.788227 ACTTCCTGACCAGTTGCATTA 57.212 42.857 0.00 0.00 0.00 1.90
4295 5993 3.058224 GCGAGGTTGACTTTTGTTAGCAT 60.058 43.478 0.00 0.00 0.00 3.79
4310 6008 1.223487 GCATAACTCCCCTGCGGAA 59.777 57.895 0.00 0.00 41.40 4.30
4325 6023 4.761739 CCTGCGGAAATACCACATGAATAT 59.238 41.667 0.00 0.00 38.90 1.28
4326 6024 5.241506 CCTGCGGAAATACCACATGAATATT 59.758 40.000 0.00 0.00 38.90 1.28
4327 6025 6.239008 CCTGCGGAAATACCACATGAATATTT 60.239 38.462 0.00 6.52 38.90 1.40
4328 6026 7.106439 TGCGGAAATACCACATGAATATTTT 57.894 32.000 0.00 0.00 38.90 1.82
4329 6027 8.226819 TGCGGAAATACCACATGAATATTTTA 57.773 30.769 0.00 0.00 38.90 1.52
4330 6028 8.687242 TGCGGAAATACCACATGAATATTTTAA 58.313 29.630 0.00 0.00 38.90 1.52
4331 6029 9.522804 GCGGAAATACCACATGAATATTTTAAA 57.477 29.630 0.00 0.00 38.90 1.52
4354 6052 8.950007 AAACTGAATATTTTAAACTCCCCTGA 57.050 30.769 0.00 0.00 0.00 3.86
4355 6053 8.581253 AACTGAATATTTTAAACTCCCCTGAG 57.419 34.615 0.00 0.00 44.62 3.35
4356 6054 7.119387 ACTGAATATTTTAAACTCCCCTGAGG 58.881 38.462 0.00 0.00 43.29 3.86
4357 6055 7.036863 ACTGAATATTTTAAACTCCCCTGAGGA 60.037 37.037 0.00 0.00 44.91 3.71
4365 6063 3.948425 TCCCCTGAGGAGATACCAC 57.052 57.895 0.00 0.00 40.93 4.16
4366 6064 1.015609 TCCCCTGAGGAGATACCACA 58.984 55.000 0.00 0.00 40.93 4.17
4367 6065 1.580658 TCCCCTGAGGAGATACCACAT 59.419 52.381 0.00 0.00 40.93 3.21
4368 6066 1.696336 CCCCTGAGGAGATACCACATG 59.304 57.143 0.00 0.00 38.47 3.21
4369 6067 2.682594 CCCTGAGGAGATACCACATGA 58.317 52.381 0.00 0.00 38.47 3.07
4370 6068 3.041211 CCCTGAGGAGATACCACATGAA 58.959 50.000 0.00 0.00 38.47 2.57
4371 6069 3.649981 CCCTGAGGAGATACCACATGAAT 59.350 47.826 0.00 0.00 38.47 2.57
4372 6070 4.840680 CCCTGAGGAGATACCACATGAATA 59.159 45.833 0.00 0.00 38.47 1.75
4373 6071 5.486775 CCCTGAGGAGATACCACATGAATAT 59.513 44.000 0.00 0.00 38.47 1.28
4471 6169 7.810282 GTGCATTATACATAGAGTCTACTGTGG 59.190 40.741 18.08 0.00 34.21 4.17
4494 6192 5.045797 GGAAGACCCAGATGTAGTAAGGTTT 60.046 44.000 0.00 0.00 34.14 3.27
4495 6193 6.449830 AAGACCCAGATGTAGTAAGGTTTT 57.550 37.500 0.00 0.00 0.00 2.43
4500 6198 5.585047 CCCAGATGTAGTAAGGTTTTAGTGC 59.415 44.000 0.00 0.00 0.00 4.40
4540 6240 3.181490 TGTCAGGTTAATCGATCCAGACG 60.181 47.826 17.01 0.00 39.50 4.18
4621 6321 2.135903 TTTGGCGGGGATGAGCTGAA 62.136 55.000 0.00 0.00 0.00 3.02
4649 6349 9.489084 ACTTGCGCAATAGTATTATTCTTATCA 57.511 29.630 25.26 0.00 0.00 2.15
4681 6381 6.959904 TGTTGTATAAGGCTGGGTATTGTTA 58.040 36.000 0.00 0.00 0.00 2.41
4714 6414 3.285484 CATTGCCTAGCCAGATGTCTTT 58.715 45.455 0.00 0.00 0.00 2.52
4730 6430 6.712547 AGATGTCTTTCCAAAAACGAATCTCT 59.287 34.615 0.00 0.00 0.00 3.10
4731 6431 7.878127 AGATGTCTTTCCAAAAACGAATCTCTA 59.122 33.333 0.00 0.00 0.00 2.43
4736 6436 7.713507 TCTTTCCAAAAACGAATCTCTAACTCA 59.286 33.333 0.00 0.00 0.00 3.41
4759 6459 5.174037 TCCTTTATCGTGAAAGACCCAAT 57.826 39.130 11.70 0.00 38.48 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 6.481954 AAAATTACCAACATCGTCTGAGAC 57.518 37.500 1.65 1.65 0.00 3.36
45 46 9.683069 GTCTGTTTTGTAAGATTGTTTGATGAT 57.317 29.630 0.00 0.00 0.00 2.45
46 47 8.134895 GGTCTGTTTTGTAAGATTGTTTGATGA 58.865 33.333 0.00 0.00 0.00 2.92
47 48 7.920151 TGGTCTGTTTTGTAAGATTGTTTGATG 59.080 33.333 0.00 0.00 0.00 3.07
48 49 8.006298 TGGTCTGTTTTGTAAGATTGTTTGAT 57.994 30.769 0.00 0.00 0.00 2.57
49 50 7.397892 TGGTCTGTTTTGTAAGATTGTTTGA 57.602 32.000 0.00 0.00 0.00 2.69
50 51 8.472683 TTTGGTCTGTTTTGTAAGATTGTTTG 57.527 30.769 0.00 0.00 0.00 2.93
51 52 9.495572 TTTTTGGTCTGTTTTGTAAGATTGTTT 57.504 25.926 0.00 0.00 0.00 2.83
74 75 6.605995 ACTTGTAGTTAACCTTGAGGCTTTTT 59.394 34.615 0.88 0.00 39.32 1.94
75 76 6.127101 ACTTGTAGTTAACCTTGAGGCTTTT 58.873 36.000 0.88 0.00 39.32 2.27
76 77 5.691896 ACTTGTAGTTAACCTTGAGGCTTT 58.308 37.500 0.88 0.00 39.32 3.51
77 78 5.306114 ACTTGTAGTTAACCTTGAGGCTT 57.694 39.130 0.88 0.00 39.32 4.35
78 79 4.976540 ACTTGTAGTTAACCTTGAGGCT 57.023 40.909 0.88 0.00 39.32 4.58
79 80 5.868258 GTCTACTTGTAGTTAACCTTGAGGC 59.132 44.000 0.88 0.00 39.32 4.70
80 81 6.867293 GTGTCTACTTGTAGTTAACCTTGAGG 59.133 42.308 0.88 0.00 42.17 3.86
81 82 6.867293 GGTGTCTACTTGTAGTTAACCTTGAG 59.133 42.308 0.88 0.00 0.00 3.02
82 83 6.324512 TGGTGTCTACTTGTAGTTAACCTTGA 59.675 38.462 19.35 6.99 0.00 3.02
83 84 6.518493 TGGTGTCTACTTGTAGTTAACCTTG 58.482 40.000 19.35 0.00 0.00 3.61
84 85 6.736110 TGGTGTCTACTTGTAGTTAACCTT 57.264 37.500 19.35 0.00 0.00 3.50
85 86 6.736110 TTGGTGTCTACTTGTAGTTAACCT 57.264 37.500 19.35 0.00 0.00 3.50
86 87 7.790823 TTTTGGTGTCTACTTGTAGTTAACC 57.209 36.000 0.88 15.47 0.00 2.85
108 109 6.837471 TGTTGTACTGTTTGTAGGGTTTTT 57.163 33.333 0.00 0.00 0.00 1.94
109 110 6.837471 TTGTTGTACTGTTTGTAGGGTTTT 57.163 33.333 0.00 0.00 0.00 2.43
110 111 6.660094 TCTTTGTTGTACTGTTTGTAGGGTTT 59.340 34.615 0.00 0.00 0.00 3.27
111 112 6.181908 TCTTTGTTGTACTGTTTGTAGGGTT 58.818 36.000 0.00 0.00 0.00 4.11
112 113 5.747342 TCTTTGTTGTACTGTTTGTAGGGT 58.253 37.500 0.00 0.00 0.00 4.34
113 114 6.094325 TGTTCTTTGTTGTACTGTTTGTAGGG 59.906 38.462 0.00 0.00 0.00 3.53
114 115 7.079182 TGTTCTTTGTTGTACTGTTTGTAGG 57.921 36.000 0.00 0.00 0.00 3.18
115 116 8.018520 TGTTGTTCTTTGTTGTACTGTTTGTAG 58.981 33.333 0.00 0.00 0.00 2.74
116 117 7.872881 TGTTGTTCTTTGTTGTACTGTTTGTA 58.127 30.769 0.00 0.00 0.00 2.41
117 118 6.740110 TGTTGTTCTTTGTTGTACTGTTTGT 58.260 32.000 0.00 0.00 0.00 2.83
118 119 7.810766 ATGTTGTTCTTTGTTGTACTGTTTG 57.189 32.000 0.00 0.00 0.00 2.93
119 120 9.915629 TTTATGTTGTTCTTTGTTGTACTGTTT 57.084 25.926 0.00 0.00 0.00 2.83
124 125 9.631639 GCAAATTTATGTTGTTCTTTGTTGTAC 57.368 29.630 0.00 0.00 0.00 2.90
125 126 9.593134 AGCAAATTTATGTTGTTCTTTGTTGTA 57.407 25.926 0.00 0.00 0.00 2.41
126 127 8.389603 CAGCAAATTTATGTTGTTCTTTGTTGT 58.610 29.630 0.00 0.00 33.17 3.32
127 128 7.373966 GCAGCAAATTTATGTTGTTCTTTGTTG 59.626 33.333 0.00 0.00 37.65 3.33
128 129 7.408910 GCAGCAAATTTATGTTGTTCTTTGTT 58.591 30.769 0.00 0.00 34.42 2.83
129 130 6.018016 GGCAGCAAATTTATGTTGTTCTTTGT 60.018 34.615 0.00 0.00 34.42 2.83
130 131 6.018098 TGGCAGCAAATTTATGTTGTTCTTTG 60.018 34.615 0.00 0.00 34.42 2.77
131 132 6.018016 GTGGCAGCAAATTTATGTTGTTCTTT 60.018 34.615 0.00 0.00 34.42 2.52
132 133 5.466393 GTGGCAGCAAATTTATGTTGTTCTT 59.534 36.000 0.00 0.00 34.42 2.52
133 134 4.990426 GTGGCAGCAAATTTATGTTGTTCT 59.010 37.500 0.00 0.00 34.42 3.01
134 135 4.749099 TGTGGCAGCAAATTTATGTTGTTC 59.251 37.500 0.00 0.00 34.42 3.18
135 136 4.511082 GTGTGGCAGCAAATTTATGTTGTT 59.489 37.500 0.00 0.00 34.42 2.83
136 137 4.057432 GTGTGGCAGCAAATTTATGTTGT 58.943 39.130 0.00 0.00 34.42 3.32
137 138 4.309099 AGTGTGGCAGCAAATTTATGTTG 58.691 39.130 0.00 0.00 34.97 3.33
138 139 4.605640 AGTGTGGCAGCAAATTTATGTT 57.394 36.364 0.00 0.00 0.00 2.71
139 140 4.158394 CCTAGTGTGGCAGCAAATTTATGT 59.842 41.667 0.00 0.00 0.00 2.29
140 141 4.398988 TCCTAGTGTGGCAGCAAATTTATG 59.601 41.667 0.00 0.00 0.00 1.90
141 142 4.599041 TCCTAGTGTGGCAGCAAATTTAT 58.401 39.130 0.00 0.00 0.00 1.40
142 143 4.009675 CTCCTAGTGTGGCAGCAAATTTA 58.990 43.478 0.00 0.00 0.00 1.40
143 144 2.821969 CTCCTAGTGTGGCAGCAAATTT 59.178 45.455 0.00 0.00 0.00 1.82
144 145 2.040278 TCTCCTAGTGTGGCAGCAAATT 59.960 45.455 0.00 0.00 0.00 1.82
145 146 1.630369 TCTCCTAGTGTGGCAGCAAAT 59.370 47.619 0.00 0.00 0.00 2.32
146 147 1.055849 TCTCCTAGTGTGGCAGCAAA 58.944 50.000 0.00 0.00 0.00 3.68
147 148 1.055849 TTCTCCTAGTGTGGCAGCAA 58.944 50.000 0.00 0.00 0.00 3.91
148 149 1.055849 TTTCTCCTAGTGTGGCAGCA 58.944 50.000 0.00 0.00 0.00 4.41
149 150 2.185004 TTTTCTCCTAGTGTGGCAGC 57.815 50.000 0.00 0.00 0.00 5.25
167 168 6.926630 TTGTGGGCTCAACCTATAATTTTT 57.073 33.333 0.00 0.00 39.10 1.94
168 169 6.926630 TTTGTGGGCTCAACCTATAATTTT 57.073 33.333 0.00 0.00 39.10 1.82
169 170 6.926630 TTTTGTGGGCTCAACCTATAATTT 57.073 33.333 0.00 0.00 39.10 1.82
170 171 6.926630 TTTTTGTGGGCTCAACCTATAATT 57.073 33.333 0.00 0.00 39.10 1.40
171 172 7.494922 AATTTTTGTGGGCTCAACCTATAAT 57.505 32.000 0.00 0.00 39.10 1.28
172 173 6.926630 AATTTTTGTGGGCTCAACCTATAA 57.073 33.333 0.00 0.00 39.10 0.98
173 174 6.696411 CAAATTTTTGTGGGCTCAACCTATA 58.304 36.000 0.00 0.00 34.36 1.31
174 175 5.550290 CAAATTTTTGTGGGCTCAACCTAT 58.450 37.500 0.00 0.00 34.36 2.57
175 176 4.954875 CAAATTTTTGTGGGCTCAACCTA 58.045 39.130 0.00 0.00 34.36 3.08
176 177 3.807553 CAAATTTTTGTGGGCTCAACCT 58.192 40.909 0.00 0.00 34.36 3.50
200 201 9.942850 TGTCTATTCTGTAAGATTGATTGTTCA 57.057 29.630 0.00 0.00 46.36 3.18
215 216 9.442047 CCTTGAGACTTTTTATGTCTATTCTGT 57.558 33.333 0.00 0.00 43.88 3.41
216 217 9.658799 TCCTTGAGACTTTTTATGTCTATTCTG 57.341 33.333 0.00 0.00 43.88 3.02
261 262 9.726232 GGAAGAAAAATTTACTCGTTTTGTAGT 57.274 29.630 0.00 0.00 0.00 2.73
262 263 9.724839 TGGAAGAAAAATTTACTCGTTTTGTAG 57.275 29.630 0.00 0.00 0.00 2.74
263 264 9.505995 GTGGAAGAAAAATTTACTCGTTTTGTA 57.494 29.630 0.00 0.00 0.00 2.41
264 265 8.030106 TGTGGAAGAAAAATTTACTCGTTTTGT 58.970 29.630 0.00 0.00 0.00 2.83
265 266 8.318167 GTGTGGAAGAAAAATTTACTCGTTTTG 58.682 33.333 0.00 0.00 0.00 2.44
266 267 8.248253 AGTGTGGAAGAAAAATTTACTCGTTTT 58.752 29.630 0.00 0.00 0.00 2.43
267 268 7.768240 AGTGTGGAAGAAAAATTTACTCGTTT 58.232 30.769 0.00 0.00 0.00 3.60
268 269 7.329588 AGTGTGGAAGAAAAATTTACTCGTT 57.670 32.000 0.00 0.00 0.00 3.85
269 270 6.937436 AGTGTGGAAGAAAAATTTACTCGT 57.063 33.333 0.00 0.00 0.00 4.18
270 271 7.386848 TCCTAGTGTGGAAGAAAAATTTACTCG 59.613 37.037 0.00 0.00 32.39 4.18
271 272 8.617290 TCCTAGTGTGGAAGAAAAATTTACTC 57.383 34.615 0.00 0.00 32.39 2.59
272 273 8.437575 TCTCCTAGTGTGGAAGAAAAATTTACT 58.562 33.333 0.00 0.00 35.43 2.24
273 274 8.617290 TCTCCTAGTGTGGAAGAAAAATTTAC 57.383 34.615 0.00 0.00 35.43 2.01
274 275 9.635404 TTTCTCCTAGTGTGGAAGAAAAATTTA 57.365 29.630 0.00 0.00 34.05 1.40
275 276 8.533569 TTTCTCCTAGTGTGGAAGAAAAATTT 57.466 30.769 0.00 0.00 34.05 1.82
276 277 8.533569 TTTTCTCCTAGTGTGGAAGAAAAATT 57.466 30.769 6.21 0.00 38.58 1.82
277 278 8.533569 TTTTTCTCCTAGTGTGGAAGAAAAAT 57.466 30.769 14.11 0.00 41.43 1.82
278 279 7.948034 TTTTTCTCCTAGTGTGGAAGAAAAA 57.052 32.000 14.11 14.11 42.41 1.94
279 280 9.807921 ATATTTTTCTCCTAGTGTGGAAGAAAA 57.192 29.630 4.87 4.87 39.07 2.29
323 324 9.893305 GCAGACGGTTAAAGCATTATTAAATAT 57.107 29.630 0.00 0.00 0.00 1.28
324 325 9.116067 AGCAGACGGTTAAAGCATTATTAAATA 57.884 29.630 0.00 0.00 0.00 1.40
325 326 7.996385 AGCAGACGGTTAAAGCATTATTAAAT 58.004 30.769 0.00 0.00 0.00 1.40
326 327 7.385778 AGCAGACGGTTAAAGCATTATTAAA 57.614 32.000 0.00 0.00 0.00 1.52
327 328 6.995511 AGCAGACGGTTAAAGCATTATTAA 57.004 33.333 0.00 0.00 0.00 1.40
328 329 7.713507 ACATAGCAGACGGTTAAAGCATTATTA 59.286 33.333 0.00 0.00 0.00 0.98
329 330 6.542370 ACATAGCAGACGGTTAAAGCATTATT 59.458 34.615 0.00 0.00 0.00 1.40
330 331 6.055588 ACATAGCAGACGGTTAAAGCATTAT 58.944 36.000 0.00 0.00 0.00 1.28
331 332 5.424757 ACATAGCAGACGGTTAAAGCATTA 58.575 37.500 0.00 0.00 0.00 1.90
332 333 4.261801 ACATAGCAGACGGTTAAAGCATT 58.738 39.130 0.00 0.00 0.00 3.56
333 334 3.873910 ACATAGCAGACGGTTAAAGCAT 58.126 40.909 0.00 0.00 0.00 3.79
334 335 3.328382 ACATAGCAGACGGTTAAAGCA 57.672 42.857 0.00 0.00 0.00 3.91
344 345 2.853731 AGCGTCAGTACATAGCAGAC 57.146 50.000 0.00 0.00 0.00 3.51
354 355 2.747989 CAGACCACTAGAAGCGTCAGTA 59.252 50.000 1.61 0.00 0.00 2.74
358 359 0.798771 CGCAGACCACTAGAAGCGTC 60.799 60.000 0.00 0.00 40.25 5.19
392 393 3.243267 TGTTCAACGTCGTCTGAGATGAA 60.243 43.478 5.85 0.73 28.80 2.57
403 404 6.732181 ATGAAGAAAAATTGTTCAACGTCG 57.268 33.333 10.98 0.00 44.62 5.12
404 405 8.261908 CAGAATGAAGAAAAATTGTTCAACGTC 58.738 33.333 10.98 3.45 44.62 4.34
406 407 8.338985 TCAGAATGAAGAAAAATTGTTCAACG 57.661 30.769 10.98 0.00 45.97 4.10
435 436 8.095792 TGGTCTATTTTGTAAGGTTGTTCGATA 58.904 33.333 0.00 0.00 0.00 2.92
500 589 8.978874 TTGTATGGTTGATGCTTCAGTAATAT 57.021 30.769 2.23 0.00 32.27 1.28
503 592 6.883756 TGATTGTATGGTTGATGCTTCAGTAA 59.116 34.615 2.23 0.00 32.27 2.24
504 593 6.413892 TGATTGTATGGTTGATGCTTCAGTA 58.586 36.000 2.23 0.00 32.27 2.74
506 595 5.823209 TGATTGTATGGTTGATGCTTCAG 57.177 39.130 2.23 0.00 32.27 3.02
507 596 6.604396 AGAATGATTGTATGGTTGATGCTTCA 59.396 34.615 0.00 0.00 0.00 3.02
508 597 7.035840 AGAATGATTGTATGGTTGATGCTTC 57.964 36.000 0.00 0.00 0.00 3.86
509 598 7.414222 AAGAATGATTGTATGGTTGATGCTT 57.586 32.000 0.00 0.00 0.00 3.91
511 600 7.706159 TGTAAGAATGATTGTATGGTTGATGC 58.294 34.615 0.00 0.00 0.00 3.91
534 623 9.388506 CTCCAAGAAGTCATTGAGTTATTATGT 57.611 33.333 12.45 0.00 27.42 2.29
535 624 8.834465 CCTCCAAGAAGTCATTGAGTTATTATG 58.166 37.037 12.45 8.24 27.42 1.90
536 625 7.500559 GCCTCCAAGAAGTCATTGAGTTATTAT 59.499 37.037 12.45 0.00 27.42 1.28
537 626 6.823689 GCCTCCAAGAAGTCATTGAGTTATTA 59.176 38.462 12.45 0.35 27.42 0.98
538 627 5.649831 GCCTCCAAGAAGTCATTGAGTTATT 59.350 40.000 6.72 7.43 28.14 1.40
539 628 5.189180 GCCTCCAAGAAGTCATTGAGTTAT 58.811 41.667 6.72 1.10 0.00 1.89
540 629 4.565652 GGCCTCCAAGAAGTCATTGAGTTA 60.566 45.833 6.72 0.00 0.00 2.24
541 630 3.416156 GCCTCCAAGAAGTCATTGAGTT 58.584 45.455 6.44 6.44 0.00 3.01
542 631 2.290577 GGCCTCCAAGAAGTCATTGAGT 60.291 50.000 0.00 0.00 0.00 3.41
543 632 2.290514 TGGCCTCCAAGAAGTCATTGAG 60.291 50.000 3.32 0.00 0.00 3.02
544 633 1.704628 TGGCCTCCAAGAAGTCATTGA 59.295 47.619 3.32 0.00 0.00 2.57
545 634 2.205022 TGGCCTCCAAGAAGTCATTG 57.795 50.000 3.32 0.00 0.00 2.82
546 635 2.978156 TTGGCCTCCAAGAAGTCATT 57.022 45.000 3.32 0.00 38.75 2.57
547 636 2.978156 TTTGGCCTCCAAGAAGTCAT 57.022 45.000 3.32 0.00 44.84 3.06
548 637 2.555227 GGATTTGGCCTCCAAGAAGTCA 60.555 50.000 3.32 0.00 44.84 3.41
549 638 2.095461 GGATTTGGCCTCCAAGAAGTC 58.905 52.381 3.32 0.00 44.84 3.01
550 639 1.272704 GGGATTTGGCCTCCAAGAAGT 60.273 52.381 11.42 0.00 44.84 3.01
551 640 1.478631 GGGATTTGGCCTCCAAGAAG 58.521 55.000 11.42 0.00 44.84 2.85
552 641 0.323360 CGGGATTTGGCCTCCAAGAA 60.323 55.000 11.42 0.00 44.84 2.52
553 642 1.204786 TCGGGATTTGGCCTCCAAGA 61.205 55.000 11.42 7.22 44.84 3.02
554 643 1.032114 GTCGGGATTTGGCCTCCAAG 61.032 60.000 11.42 5.13 44.84 3.61
555 644 1.001393 GTCGGGATTTGGCCTCCAA 60.001 57.895 11.42 0.00 42.29 3.53
556 645 2.674754 GTCGGGATTTGGCCTCCA 59.325 61.111 11.42 0.00 34.24 3.86
557 646 2.124278 GGTCGGGATTTGGCCTCC 60.124 66.667 3.32 1.80 0.00 4.30
558 647 2.513897 CGGTCGGGATTTGGCCTC 60.514 66.667 3.32 0.00 0.00 4.70
559 648 2.598787 TTCGGTCGGGATTTGGCCT 61.599 57.895 3.32 0.00 0.00 5.19
560 649 2.045731 TTCGGTCGGGATTTGGCC 60.046 61.111 0.00 0.00 0.00 5.36
561 650 0.108041 TAGTTCGGTCGGGATTTGGC 60.108 55.000 0.00 0.00 0.00 4.52
562 651 2.389962 TTAGTTCGGTCGGGATTTGG 57.610 50.000 0.00 0.00 0.00 3.28
563 652 6.425577 TTTATTTAGTTCGGTCGGGATTTG 57.574 37.500 0.00 0.00 0.00 2.32
564 653 7.634671 AATTTATTTAGTTCGGTCGGGATTT 57.365 32.000 0.00 0.00 0.00 2.17
565 654 7.415877 CCAAATTTATTTAGTTCGGTCGGGATT 60.416 37.037 0.00 0.00 0.00 3.01
566 655 6.038936 CCAAATTTATTTAGTTCGGTCGGGAT 59.961 38.462 0.00 0.00 0.00 3.85
567 656 5.354792 CCAAATTTATTTAGTTCGGTCGGGA 59.645 40.000 0.00 0.00 0.00 5.14
568 657 5.124297 ACCAAATTTATTTAGTTCGGTCGGG 59.876 40.000 0.00 0.00 0.00 5.14
569 658 6.025280 CACCAAATTTATTTAGTTCGGTCGG 58.975 40.000 0.00 0.00 0.00 4.79
570 659 5.510323 GCACCAAATTTATTTAGTTCGGTCG 59.490 40.000 0.00 0.00 0.00 4.79
571 660 5.803461 GGCACCAAATTTATTTAGTTCGGTC 59.197 40.000 0.00 0.00 0.00 4.79
572 661 5.244178 TGGCACCAAATTTATTTAGTTCGGT 59.756 36.000 0.00 0.00 0.00 4.69
573 662 5.575218 GTGGCACCAAATTTATTTAGTTCGG 59.425 40.000 6.29 0.00 0.00 4.30
574 663 6.088883 GTGTGGCACCAAATTTATTTAGTTCG 59.911 38.462 16.26 0.00 0.00 3.95
575 664 7.151976 AGTGTGGCACCAAATTTATTTAGTTC 58.848 34.615 16.26 0.00 34.49 3.01
576 665 7.061566 AGTGTGGCACCAAATTTATTTAGTT 57.938 32.000 16.26 0.00 34.49 2.24
577 666 6.664428 AGTGTGGCACCAAATTTATTTAGT 57.336 33.333 16.26 0.00 34.49 2.24
578 667 7.122055 TCCTAGTGTGGCACCAAATTTATTTAG 59.878 37.037 16.26 1.70 34.49 1.85
579 668 6.948886 TCCTAGTGTGGCACCAAATTTATTTA 59.051 34.615 16.26 0.00 34.49 1.40
580 669 5.777732 TCCTAGTGTGGCACCAAATTTATTT 59.222 36.000 16.26 0.00 34.49 1.40
581 670 5.329399 TCCTAGTGTGGCACCAAATTTATT 58.671 37.500 16.26 0.00 34.49 1.40
584 673 3.157087 CTCCTAGTGTGGCACCAAATTT 58.843 45.455 16.26 0.00 34.49 1.82
608 697 8.504812 AATTTTTGTGTGCTCAACCTATTTTT 57.495 26.923 0.00 0.00 0.00 1.94
630 723 9.825972 CTGTAAGATTGTTCGTTCATACAAATT 57.174 29.630 0.00 0.00 37.75 1.82
631 724 9.214957 TCTGTAAGATTGTTCGTTCATACAAAT 57.785 29.630 0.00 0.00 38.67 2.32
717 811 6.586344 TGGTGTGGCAGAAAAATCAAAAATA 58.414 32.000 0.00 0.00 0.00 1.40
718 812 5.435291 TGGTGTGGCAGAAAAATCAAAAAT 58.565 33.333 0.00 0.00 0.00 1.82
719 813 4.836825 TGGTGTGGCAGAAAAATCAAAAA 58.163 34.783 0.00 0.00 0.00 1.94
720 814 4.440880 CTGGTGTGGCAGAAAAATCAAAA 58.559 39.130 0.00 0.00 0.00 2.44
721 815 3.181467 CCTGGTGTGGCAGAAAAATCAAA 60.181 43.478 0.00 0.00 0.00 2.69
722 816 2.364970 CCTGGTGTGGCAGAAAAATCAA 59.635 45.455 0.00 0.00 0.00 2.57
723 817 1.962807 CCTGGTGTGGCAGAAAAATCA 59.037 47.619 0.00 0.00 0.00 2.57
724 818 2.229784 CTCCTGGTGTGGCAGAAAAATC 59.770 50.000 0.00 0.00 0.00 2.17
725 819 2.158475 TCTCCTGGTGTGGCAGAAAAAT 60.158 45.455 0.00 0.00 0.00 1.82
726 820 1.214175 TCTCCTGGTGTGGCAGAAAAA 59.786 47.619 0.00 0.00 0.00 1.94
727 821 0.843309 TCTCCTGGTGTGGCAGAAAA 59.157 50.000 0.00 0.00 0.00 2.29
728 822 0.843309 TTCTCCTGGTGTGGCAGAAA 59.157 50.000 0.00 0.00 0.00 2.52
729 823 0.843309 TTTCTCCTGGTGTGGCAGAA 59.157 50.000 0.00 0.00 0.00 3.02
730 824 0.843309 TTTTCTCCTGGTGTGGCAGA 59.157 50.000 0.00 0.00 0.00 4.26
731 825 1.691196 TTTTTCTCCTGGTGTGGCAG 58.309 50.000 0.00 0.00 0.00 4.85
732 826 2.380064 ATTTTTCTCCTGGTGTGGCA 57.620 45.000 0.00 0.00 0.00 4.92
733 827 3.153919 TGTATTTTTCTCCTGGTGTGGC 58.846 45.455 0.00 0.00 0.00 5.01
734 828 5.982890 ATTGTATTTTTCTCCTGGTGTGG 57.017 39.130 0.00 0.00 0.00 4.17
735 829 9.927668 AATTTATTGTATTTTTCTCCTGGTGTG 57.072 29.630 0.00 0.00 0.00 3.82
760 854 8.793472 CGCGTCATAATGTTTTTATTTGATGAA 58.207 29.630 0.00 0.00 0.00 2.57
761 855 7.044380 GCGCGTCATAATGTTTTTATTTGATGA 60.044 33.333 8.43 0.00 0.00 2.92
762 856 7.050811 GCGCGTCATAATGTTTTTATTTGATG 58.949 34.615 8.43 0.00 0.00 3.07
763 857 6.198216 GGCGCGTCATAATGTTTTTATTTGAT 59.802 34.615 5.47 0.00 0.00 2.57
764 858 5.513495 GGCGCGTCATAATGTTTTTATTTGA 59.487 36.000 5.47 0.00 0.00 2.69
765 859 5.287274 TGGCGCGTCATAATGTTTTTATTTG 59.713 36.000 10.57 0.00 0.00 2.32
766 860 5.403246 TGGCGCGTCATAATGTTTTTATTT 58.597 33.333 10.57 0.00 0.00 1.40
767 861 4.987832 TGGCGCGTCATAATGTTTTTATT 58.012 34.783 10.57 0.00 0.00 1.40
768 862 4.497340 CCTGGCGCGTCATAATGTTTTTAT 60.497 41.667 16.48 0.00 0.00 1.40
769 863 3.181505 CCTGGCGCGTCATAATGTTTTTA 60.182 43.478 16.48 0.00 0.00 1.52
770 864 2.415357 CCTGGCGCGTCATAATGTTTTT 60.415 45.455 16.48 0.00 0.00 1.94
771 865 1.132262 CCTGGCGCGTCATAATGTTTT 59.868 47.619 16.48 0.00 0.00 2.43
772 866 0.732571 CCTGGCGCGTCATAATGTTT 59.267 50.000 16.48 0.00 0.00 2.83
773 867 0.392461 ACCTGGCGCGTCATAATGTT 60.392 50.000 16.48 0.00 0.00 2.71
774 868 0.462375 TACCTGGCGCGTCATAATGT 59.538 50.000 16.48 12.10 0.00 2.71
775 869 1.139989 CTACCTGGCGCGTCATAATG 58.860 55.000 16.48 1.25 0.00 1.90
776 870 0.033504 CCTACCTGGCGCGTCATAAT 59.966 55.000 16.48 5.15 0.00 1.28
777 871 1.440060 CCTACCTGGCGCGTCATAA 59.560 57.895 16.48 1.05 0.00 1.90
778 872 2.495409 CCCTACCTGGCGCGTCATA 61.495 63.158 16.48 3.33 0.00 2.15
779 873 3.849951 CCCTACCTGGCGCGTCAT 61.850 66.667 16.48 1.90 0.00 3.06
835 929 0.176680 CGCCTGTAGCTCAGTGGATT 59.823 55.000 10.86 0.00 42.19 3.01
892 986 5.329191 TGGGGATGATAGATGAATTTGCT 57.671 39.130 0.00 0.00 0.00 3.91
894 988 7.231925 TGTGATTGGGGATGATAGATGAATTTG 59.768 37.037 0.00 0.00 0.00 2.32
908 1002 3.006677 CCCGGTGTGATTGGGGAT 58.993 61.111 0.00 0.00 42.59 3.85
937 1031 1.298859 CGACAGCTTTGCAGGGGTAC 61.299 60.000 0.00 0.00 0.00 3.34
1073 1174 1.671742 GGCGACTGGAGAAGGTTCA 59.328 57.895 0.00 0.00 0.00 3.18
1099 1200 2.383683 TGAAGAAGAAGAGAGGGGGAGA 59.616 50.000 0.00 0.00 0.00 3.71
1100 1201 2.765699 CTGAAGAAGAAGAGAGGGGGAG 59.234 54.545 0.00 0.00 0.00 4.30
1102 1203 1.836802 CCTGAAGAAGAAGAGAGGGGG 59.163 57.143 0.00 0.00 0.00 5.40
1103 1204 1.209261 GCCTGAAGAAGAAGAGAGGGG 59.791 57.143 0.00 0.00 0.00 4.79
1104 1205 1.209261 GGCCTGAAGAAGAAGAGAGGG 59.791 57.143 0.00 0.00 0.00 4.30
1105 1206 1.209261 GGGCCTGAAGAAGAAGAGAGG 59.791 57.143 0.84 0.00 0.00 3.69
1106 1207 2.168313 GAGGGCCTGAAGAAGAAGAGAG 59.832 54.545 12.95 0.00 0.00 3.20
1107 1208 2.183679 GAGGGCCTGAAGAAGAAGAGA 58.816 52.381 12.95 0.00 0.00 3.10
1108 1209 2.187100 AGAGGGCCTGAAGAAGAAGAG 58.813 52.381 12.95 0.00 0.00 2.85
1109 1210 2.334006 AGAGGGCCTGAAGAAGAAGA 57.666 50.000 12.95 0.00 0.00 2.87
1112 1213 3.515901 GACTAAAGAGGGCCTGAAGAAGA 59.484 47.826 12.95 0.00 0.00 2.87
1113 1214 3.517500 AGACTAAAGAGGGCCTGAAGAAG 59.482 47.826 12.95 4.23 0.00 2.85
1114 1215 3.521727 AGACTAAAGAGGGCCTGAAGAA 58.478 45.455 12.95 0.00 0.00 2.52
1115 1216 3.191888 AGACTAAAGAGGGCCTGAAGA 57.808 47.619 12.95 0.00 0.00 2.87
1117 1218 2.572104 GGAAGACTAAAGAGGGCCTGAA 59.428 50.000 12.95 0.00 0.00 3.02
1118 1219 2.188817 GGAAGACTAAAGAGGGCCTGA 58.811 52.381 12.95 0.00 0.00 3.86
1119 1220 1.210722 GGGAAGACTAAAGAGGGCCTG 59.789 57.143 12.95 0.00 0.00 4.85
1120 1221 1.585895 GGGAAGACTAAAGAGGGCCT 58.414 55.000 5.25 5.25 0.00 5.19
1121 1222 0.547075 GGGGAAGACTAAAGAGGGCC 59.453 60.000 0.00 0.00 0.00 5.80
1122 1223 1.210722 CAGGGGAAGACTAAAGAGGGC 59.789 57.143 0.00 0.00 0.00 5.19
1123 1224 2.502130 GACAGGGGAAGACTAAAGAGGG 59.498 54.545 0.00 0.00 0.00 4.30
1124 1225 2.502130 GGACAGGGGAAGACTAAAGAGG 59.498 54.545 0.00 0.00 0.00 3.69
1125 1226 3.055747 GTGGACAGGGGAAGACTAAAGAG 60.056 52.174 0.00 0.00 0.00 2.85
1130 1231 0.490017 TGGTGGACAGGGGAAGACTA 59.510 55.000 0.00 0.00 0.00 2.59
1138 1239 1.302832 GAGCAGTTGGTGGACAGGG 60.303 63.158 0.00 0.00 0.00 4.45
1141 1242 1.069090 GACGAGCAGTTGGTGGACA 59.931 57.895 0.36 0.00 0.00 4.02
1150 1251 0.322546 GGGGAAATTGGACGAGCAGT 60.323 55.000 0.00 0.00 0.00 4.40
1158 1259 2.545810 GATTTGGGTGGGGAAATTGGA 58.454 47.619 0.00 0.00 0.00 3.53
1237 1338 6.739112 ACAGAGAAAATCAAAGTACAAAGCC 58.261 36.000 0.00 0.00 0.00 4.35
1241 1342 7.042051 CGGAGAACAGAGAAAATCAAAGTACAA 60.042 37.037 0.00 0.00 0.00 2.41
1244 1345 5.932303 CCGGAGAACAGAGAAAATCAAAGTA 59.068 40.000 0.00 0.00 0.00 2.24
1251 1352 2.303022 TGAGCCGGAGAACAGAGAAAAT 59.697 45.455 5.05 0.00 0.00 1.82
1345 1446 1.166531 AGGGAAAGCGAACTGTGTGC 61.167 55.000 0.00 0.00 0.00 4.57
1512 1617 7.170277 TCACATATAGTACTACCGGATTAGCA 58.830 38.462 9.46 0.00 0.00 3.49
1524 1629 6.867662 GCCTTTTGCATCACATATAGTACT 57.132 37.500 0.00 0.00 40.77 2.73
1552 1657 0.036164 ATTGCTGTCGTTGCCTACCA 59.964 50.000 0.00 0.00 0.00 3.25
1553 1658 0.447801 CATTGCTGTCGTTGCCTACC 59.552 55.000 0.00 0.00 0.00 3.18
1554 1659 1.438651 TCATTGCTGTCGTTGCCTAC 58.561 50.000 0.00 0.00 0.00 3.18
1555 1660 1.804151 GTTCATTGCTGTCGTTGCCTA 59.196 47.619 0.00 0.00 0.00 3.93
1556 1661 0.593128 GTTCATTGCTGTCGTTGCCT 59.407 50.000 0.00 0.00 0.00 4.75
1557 1662 0.310543 TGTTCATTGCTGTCGTTGCC 59.689 50.000 0.00 0.00 0.00 4.52
1558 1663 2.046313 CTTGTTCATTGCTGTCGTTGC 58.954 47.619 0.00 0.00 0.00 4.17
1559 1664 2.290367 TCCTTGTTCATTGCTGTCGTTG 59.710 45.455 0.00 0.00 0.00 4.10
1562 1667 3.624326 TTTCCTTGTTCATTGCTGTCG 57.376 42.857 0.00 0.00 0.00 4.35
1582 1687 8.721019 ACAACAAATTGACAGACATTTCAAAT 57.279 26.923 0.00 0.00 39.30 2.32
1593 1698 9.781834 TTTAGTCTGTTTACAACAAATTGACAG 57.218 29.630 0.00 1.96 41.61 3.51
1601 1706 7.712205 GGGAGTAGTTTAGTCTGTTTACAACAA 59.288 37.037 0.00 0.00 41.61 2.83
1624 1730 7.059202 GGTCTTATATTTCTTTACCGAGGGA 57.941 40.000 0.00 0.00 0.00 4.20
1630 1736 9.605275 ACCTAAACGGTCTTATATTTCTTTACC 57.395 33.333 0.00 0.00 44.93 2.85
1718 1824 7.440255 CCTTCAAAAAGATTTCTGAGCATTTGT 59.560 33.333 0.00 0.00 34.14 2.83
1807 1914 6.407752 CCGTCACATAGTTAACTTAGGGGAAT 60.408 42.308 14.49 0.00 0.00 3.01
1809 1916 4.403432 CCGTCACATAGTTAACTTAGGGGA 59.597 45.833 14.49 7.52 0.00 4.81
1824 1931 2.140717 GTTTCCGACTTTCCGTCACAT 58.859 47.619 0.00 0.00 42.98 3.21
1859 1966 7.005296 TGTAGGTAAAATGGAAAAAGGCTACA 58.995 34.615 0.00 0.00 0.00 2.74
1906 2013 7.749539 AAGTGTAAACAAGAAAATCAAACGG 57.250 32.000 0.00 0.00 0.00 4.44
2080 2187 9.409312 TCATTTTTCTATTGCACACAGTTATTG 57.591 29.630 0.00 0.00 0.00 1.90
2081 2188 9.630098 CTCATTTTTCTATTGCACACAGTTATT 57.370 29.630 0.00 0.00 0.00 1.40
2085 2192 5.565439 GCCTCATTTTTCTATTGCACACAGT 60.565 40.000 0.00 0.00 0.00 3.55
2097 2204 6.570692 CAAATCTATGCAGCCTCATTTTTCT 58.429 36.000 0.00 0.00 0.00 2.52
2138 2245 4.668576 AAGCATGATAACACACTGAACG 57.331 40.909 0.00 0.00 0.00 3.95
2160 2267 4.861210 ACCGAAACATTTCAAATAACGCA 58.139 34.783 5.28 0.00 37.01 5.24
2163 2270 8.287503 ACTCTGTACCGAAACATTTCAAATAAC 58.712 33.333 5.28 0.00 37.01 1.89
2225 2332 6.866770 TGTAAGGATAGTGAACTGAAAGAACG 59.133 38.462 0.00 0.00 37.43 3.95
2283 2390 5.710513 AGCAACAATCTGAATTTGCACTA 57.289 34.783 17.91 0.00 33.08 2.74
2295 2404 6.573664 TGCATAAGTGTTTAGCAACAATCT 57.426 33.333 0.00 0.00 44.72 2.40
2374 2489 6.239176 CCAAGCATTAGGTGTAAAAAGGAACA 60.239 38.462 0.00 0.00 0.00 3.18
2375 2490 6.156519 CCAAGCATTAGGTGTAAAAAGGAAC 58.843 40.000 0.00 0.00 0.00 3.62
2388 2503 8.174733 AGATGAATAATTCACCAAGCATTAGG 57.825 34.615 0.00 0.00 43.48 2.69
2393 2508 7.707624 AAGAAGATGAATAATTCACCAAGCA 57.292 32.000 0.00 0.00 43.48 3.91
2406 2521 8.242729 ACAAACAGAGGAAAAAGAAGATGAAT 57.757 30.769 0.00 0.00 0.00 2.57
2419 2534 7.993183 AGAATCTTAAAGTGACAAACAGAGGAA 59.007 33.333 0.00 0.00 0.00 3.36
2451 2566 9.261035 AGATTAGTTGATCTCTTCAAAGAGGTA 57.739 33.333 17.43 2.41 46.17 3.08
2619 2737 2.446435 ACACCAATGCTATTGTGGACC 58.554 47.619 0.00 0.00 36.23 4.46
2936 3056 2.800544 CCGCCCTGTATTAATTGACGAG 59.199 50.000 0.00 0.00 0.00 4.18
2937 3057 2.431419 TCCGCCCTGTATTAATTGACGA 59.569 45.455 0.00 0.00 0.00 4.20
2938 3058 2.800544 CTCCGCCCTGTATTAATTGACG 59.199 50.000 0.00 0.00 0.00 4.35
2939 3059 3.139077 CCTCCGCCCTGTATTAATTGAC 58.861 50.000 0.00 0.00 0.00 3.18
2940 3060 2.105821 CCCTCCGCCCTGTATTAATTGA 59.894 50.000 0.00 0.00 0.00 2.57
2941 3061 2.105821 TCCCTCCGCCCTGTATTAATTG 59.894 50.000 0.00 0.00 0.00 2.32
2946 3067 0.263765 TACTCCCTCCGCCCTGTATT 59.736 55.000 0.00 0.00 0.00 1.89
2951 3072 0.561680 AATACTACTCCCTCCGCCCT 59.438 55.000 0.00 0.00 0.00 5.19
2956 3077 9.145442 AGATGTAAACTAAATACTACTCCCTCC 57.855 37.037 0.00 0.00 0.00 4.30
3059 3180 4.775236 ACAGCTCCAGAAGATTTGGTATC 58.225 43.478 0.00 0.00 37.02 2.24
3102 3223 4.100189 GGACTACAGGACACTAATGCTCAT 59.900 45.833 0.00 0.00 0.00 2.90
3127 3248 1.675801 CTCTCTGCCAGACTGCCAA 59.324 57.895 0.00 0.00 0.00 4.52
3354 3475 2.561419 TGGTGTAGACACTACAGGAAGC 59.439 50.000 12.32 1.19 45.73 3.86
3358 3479 5.185249 AGTTACATGGTGTAGACACTACAGG 59.815 44.000 12.32 7.32 45.73 4.00
3377 3498 8.031864 ACATATATGCATACTCTCAGCAGTTAC 58.968 37.037 8.99 0.00 42.14 2.50
3414 3535 7.169982 TCGATCTGAACTCTGAAAAGAAAGAAC 59.830 37.037 0.00 0.00 0.00 3.01
3439 3560 4.616835 GCAGTTGATGAACCATTGGAGTTC 60.617 45.833 10.37 4.40 43.20 3.01
3460 3581 6.149973 CACTATGACATGAGAAAGAAAAGGCA 59.850 38.462 0.00 0.00 0.00 4.75
3570 3691 3.819564 TGTCCTCCCAGTATCATTTCG 57.180 47.619 0.00 0.00 0.00 3.46
3626 3747 4.537135 AACCTCGCAATCTCTTCTACAA 57.463 40.909 0.00 0.00 0.00 2.41
3690 3811 4.316584 CGCTGTTATAAAATTGCACATGCG 60.317 41.667 0.00 0.00 45.83 4.73
3704 3825 4.665833 AGTAGCAACCATCGCTGTTATA 57.334 40.909 0.00 0.00 40.73 0.98
3717 3838 4.628074 TCTAACCTGTGTCAAGTAGCAAC 58.372 43.478 0.00 0.00 0.00 4.17
3819 3940 3.041946 AGTCTCCAAAACTGTCAGTCCT 58.958 45.455 5.82 0.00 0.00 3.85
3824 3945 3.206150 GCTCAAGTCTCCAAAACTGTCA 58.794 45.455 0.00 0.00 0.00 3.58
4006 4130 5.163405 ACACATAACAGCTGTATAGACTGGG 60.163 44.000 22.01 14.11 34.47 4.45
4078 5775 9.537848 GACAGTATTTCAAATAGGTACAAAACG 57.462 33.333 0.00 0.00 0.00 3.60
4101 5798 2.079170 TTTTGGTCATTGGCTGGACA 57.921 45.000 0.00 0.00 35.74 4.02
4185 5882 6.098266 ACCTCTTTTTCAATGTAAGTTTGCCT 59.902 34.615 0.00 0.00 0.00 4.75
4186 5883 6.200854 CACCTCTTTTTCAATGTAAGTTTGCC 59.799 38.462 0.00 0.00 0.00 4.52
4225 5923 6.795399 AGAAGTGTTGTTTTTGTACTCATGG 58.205 36.000 0.00 0.00 0.00 3.66
4268 5966 5.705609 AACAAAAGTCAACCTCGCATAAT 57.294 34.783 0.00 0.00 0.00 1.28
4270 5968 4.153475 GCTAACAAAAGTCAACCTCGCATA 59.847 41.667 0.00 0.00 0.00 3.14
4271 5969 3.058224 GCTAACAAAAGTCAACCTCGCAT 60.058 43.478 0.00 0.00 0.00 4.73
4282 5980 5.010282 CAGGGGAGTTATGCTAACAAAAGT 58.990 41.667 8.23 0.00 0.00 2.66
4329 6027 8.950007 TCAGGGGAGTTTAAAATATTCAGTTT 57.050 30.769 0.00 0.00 0.00 2.66
4330 6028 7.615757 CCTCAGGGGAGTTTAAAATATTCAGTT 59.384 37.037 0.00 0.00 39.64 3.16
4331 6029 7.036863 TCCTCAGGGGAGTTTAAAATATTCAGT 60.037 37.037 0.00 0.00 39.58 3.41
4332 6030 7.346471 TCCTCAGGGGAGTTTAAAATATTCAG 58.654 38.462 0.00 0.00 39.58 3.02
4333 6031 7.278724 TCCTCAGGGGAGTTTAAAATATTCA 57.721 36.000 0.00 0.00 39.58 2.57
4347 6045 1.015609 TGTGGTATCTCCTCAGGGGA 58.984 55.000 0.00 0.00 42.77 4.81
4348 6046 1.696336 CATGTGGTATCTCCTCAGGGG 59.304 57.143 0.00 0.00 41.99 4.79
4349 6047 2.682594 TCATGTGGTATCTCCTCAGGG 58.317 52.381 0.00 0.00 41.99 4.45
4350 6048 4.970860 ATTCATGTGGTATCTCCTCAGG 57.029 45.455 0.00 0.00 41.99 3.86
4351 6049 8.915057 AAAATATTCATGTGGTATCTCCTCAG 57.085 34.615 0.00 0.00 41.99 3.35
4371 6069 8.505625 CGCAGGTACCACTTAAAGTTAAAAATA 58.494 33.333 15.94 0.00 0.00 1.40
4372 6070 7.364970 CGCAGGTACCACTTAAAGTTAAAAAT 58.635 34.615 15.94 0.00 0.00 1.82
4373 6071 6.727215 CGCAGGTACCACTTAAAGTTAAAAA 58.273 36.000 15.94 0.00 0.00 1.94
4451 6149 7.937942 GGTCTTCCACAGTAGACTCTATGTATA 59.062 40.741 0.00 0.00 39.62 1.47
4471 6169 5.678955 AACCTTACTACATCTGGGTCTTC 57.321 43.478 0.00 0.00 0.00 2.87
4494 6192 0.958382 GCCGGGATGTGTTGCACTAA 60.958 55.000 2.18 0.00 35.11 2.24
4495 6193 1.376683 GCCGGGATGTGTTGCACTA 60.377 57.895 2.18 0.00 35.11 2.74
4500 6198 1.603455 ACAAGGCCGGGATGTGTTG 60.603 57.895 2.18 0.00 0.00 3.33
4540 6240 9.739276 TTATGTCATGGAATAATCTATTGTCCC 57.261 33.333 0.00 0.00 0.00 4.46
4597 6297 1.541588 GCTCATCCCCGCCAAATATTC 59.458 52.381 0.00 0.00 0.00 1.75
4621 6321 7.553881 AAGAATAATACTATTGCGCAAGTGT 57.446 32.000 28.62 27.17 41.68 3.55
4649 6349 3.126858 CAGCCTTATACAACATTGCACGT 59.873 43.478 0.00 0.00 0.00 4.49
4681 6381 3.553922 GCTAGGCAATGCTAGTCTTCGAT 60.554 47.826 4.82 0.00 0.00 3.59
4714 6414 6.594159 GGATGAGTTAGAGATTCGTTTTTGGA 59.406 38.462 0.00 0.00 0.00 3.53
4730 6430 7.039882 GGTCTTTCACGATAAAGGATGAGTTA 58.960 38.462 12.17 0.00 37.13 2.24
4731 6431 5.875359 GGTCTTTCACGATAAAGGATGAGTT 59.125 40.000 12.17 0.00 37.13 3.01
4736 6436 4.837093 TGGGTCTTTCACGATAAAGGAT 57.163 40.909 12.17 0.00 37.13 3.24
4759 6459 3.304659 GGCAAAGAAACATCTCTTTCGCA 60.305 43.478 15.62 0.00 42.47 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.