Multiple sequence alignment - TraesCS4B01G234300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G234300 chr4B 100.000 3015 0 0 1 3015 488681153 488678139 0.000000e+00 5568
1 TraesCS4B01G234300 chr4B 96.809 564 16 2 2143 2705 161620195 161620757 0.000000e+00 941
2 TraesCS4B01G234300 chr4B 95.783 166 7 0 2755 2920 161620736 161620901 4.950000e-68 268
3 TraesCS4B01G234300 chr4D 90.688 1686 74 25 486 2138 396673048 396671413 0.000000e+00 2167
4 TraesCS4B01G234300 chr4D 90.033 612 56 5 2144 2752 296630474 296631083 0.000000e+00 787
5 TraesCS4B01G234300 chr4D 93.750 480 20 5 1 471 396673502 396673024 0.000000e+00 712
6 TraesCS4B01G234300 chr4A 88.372 1720 84 33 484 2141 78182293 78180628 0.000000e+00 1962
7 TraesCS4B01G234300 chr4A 91.948 385 24 4 1 381 78182700 78182319 1.590000e-147 532
8 TraesCS4B01G234300 chr6B 98.529 612 8 1 2144 2754 476127627 476128238 0.000000e+00 1079
9 TraesCS4B01G234300 chr7B 97.596 624 13 2 2133 2754 597701161 597701784 0.000000e+00 1068
10 TraesCS4B01G234300 chr7B 95.906 171 7 0 2755 2925 597701739 597701909 8.230000e-71 278
11 TraesCS4B01G234300 chr6A 98.203 612 10 1 2144 2754 318234845 318234234 0.000000e+00 1068
12 TraesCS4B01G234300 chr6A 96.988 166 5 0 2755 2920 318234279 318234114 2.290000e-71 279
13 TraesCS4B01G234300 chr2B 97.231 614 17 0 2138 2751 583767738 583768351 0.000000e+00 1040
14 TraesCS4B01G234300 chr2B 96.386 166 6 0 2755 2920 583768309 583768474 1.060000e-69 274
15 TraesCS4B01G234300 chr1D 93.290 611 40 1 2144 2754 29577908 29578517 0.000000e+00 900
16 TraesCS4B01G234300 chr6D 89.525 611 63 1 2143 2752 131986751 131986141 0.000000e+00 773
17 TraesCS4B01G234300 chr6D 92.727 165 11 1 2757 2920 131986182 131986018 1.400000e-58 237
18 TraesCS4B01G234300 chr2A 89.344 610 64 1 2144 2752 651597303 651596694 0.000000e+00 765
19 TraesCS4B01G234300 chr2A 92.814 167 11 1 2755 2920 164886898 164887064 1.080000e-59 241
20 TraesCS4B01G234300 chr7A 92.216 167 12 1 2755 2920 295433962 295434128 5.020000e-58 235
21 TraesCS4B01G234300 chr7A 91.228 171 13 2 2755 2923 17468149 17467979 6.500000e-57 231
22 TraesCS4B01G234300 chr1B 92.169 166 12 1 2757 2921 198088067 198088232 1.810000e-57 233


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G234300 chr4B 488678139 488681153 3014 True 5568.0 5568 100.0000 1 3015 1 chr4B.!!$R1 3014
1 TraesCS4B01G234300 chr4B 161620195 161620901 706 False 604.5 941 96.2960 2143 2920 2 chr4B.!!$F1 777
2 TraesCS4B01G234300 chr4D 396671413 396673502 2089 True 1439.5 2167 92.2190 1 2138 2 chr4D.!!$R1 2137
3 TraesCS4B01G234300 chr4D 296630474 296631083 609 False 787.0 787 90.0330 2144 2752 1 chr4D.!!$F1 608
4 TraesCS4B01G234300 chr4A 78180628 78182700 2072 True 1247.0 1962 90.1600 1 2141 2 chr4A.!!$R1 2140
5 TraesCS4B01G234300 chr6B 476127627 476128238 611 False 1079.0 1079 98.5290 2144 2754 1 chr6B.!!$F1 610
6 TraesCS4B01G234300 chr7B 597701161 597701909 748 False 673.0 1068 96.7510 2133 2925 2 chr7B.!!$F1 792
7 TraesCS4B01G234300 chr6A 318234114 318234845 731 True 673.5 1068 97.5955 2144 2920 2 chr6A.!!$R1 776
8 TraesCS4B01G234300 chr2B 583767738 583768474 736 False 657.0 1040 96.8085 2138 2920 2 chr2B.!!$F1 782
9 TraesCS4B01G234300 chr1D 29577908 29578517 609 False 900.0 900 93.2900 2144 2754 1 chr1D.!!$F1 610
10 TraesCS4B01G234300 chr6D 131986018 131986751 733 True 505.0 773 91.1260 2143 2920 2 chr6D.!!$R1 777
11 TraesCS4B01G234300 chr2A 651596694 651597303 609 True 765.0 765 89.3440 2144 2752 1 chr2A.!!$R1 608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
208 210 0.332972 GAGGGAGAGGCAATTGGGTT 59.667 55.0 7.72 0.0 0.0 4.11 F
963 1024 0.611062 CCTCCGTACAGTCCTCACCA 60.611 60.0 0.00 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1510 1577 0.036388 ATCGCCTTGGTGAACACGAT 60.036 50.0 7.02 0.0 32.87 3.73 R
2035 2110 0.607489 GCCCTTGCTCTGTGACATGT 60.607 55.0 0.00 0.0 33.53 3.21 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
152 154 7.173562 CCTCCACGCTCATATATATCCTACTAC 59.826 44.444 0.00 0.00 0.00 2.73
163 165 2.304221 TCCTACTACCACAGTGCAGT 57.696 50.000 10.09 10.09 38.24 4.40
208 210 0.332972 GAGGGAGAGGCAATTGGGTT 59.667 55.000 7.72 0.00 0.00 4.11
226 234 2.749621 GGTTGCTGAATCTGGTAAGTGG 59.250 50.000 0.00 0.00 0.00 4.00
234 242 5.036916 TGAATCTGGTAAGTGGACCCTATT 58.963 41.667 0.00 0.00 38.89 1.73
244 252 2.050144 TGGACCCTATTCTCTCCATGC 58.950 52.381 0.00 0.00 0.00 4.06
276 284 4.039245 TCTGAGTTCTTCGATGGTGTTCTT 59.961 41.667 0.00 0.00 0.00 2.52
384 392 0.693049 TCTCCAAAAGCTGGTCCTCC 59.307 55.000 0.00 0.00 46.51 4.30
456 464 6.710744 GGAGTAGGAAAATTTGACTGAACTCA 59.289 38.462 17.91 0.00 33.08 3.41
462 470 7.723172 AGGAAAATTTGACTGAACTCATCTTCT 59.277 33.333 0.00 0.00 0.00 2.85
463 471 8.355913 GGAAAATTTGACTGAACTCATCTTCTT 58.644 33.333 0.00 0.00 0.00 2.52
464 472 9.392021 GAAAATTTGACTGAACTCATCTTCTTC 57.608 33.333 0.00 0.00 0.00 2.87
465 473 8.688747 AAATTTGACTGAACTCATCTTCTTCT 57.311 30.769 0.00 0.00 0.00 2.85
466 474 8.688747 AATTTGACTGAACTCATCTTCTTCTT 57.311 30.769 0.00 0.00 0.00 2.52
467 475 8.688747 ATTTGACTGAACTCATCTTCTTCTTT 57.311 30.769 0.00 0.00 0.00 2.52
468 476 8.511604 TTTGACTGAACTCATCTTCTTCTTTT 57.488 30.769 0.00 0.00 0.00 2.27
469 477 7.721286 TGACTGAACTCATCTTCTTCTTTTC 57.279 36.000 0.00 0.00 0.00 2.29
470 478 7.504403 TGACTGAACTCATCTTCTTCTTTTCT 58.496 34.615 0.00 0.00 0.00 2.52
471 479 7.989741 TGACTGAACTCATCTTCTTCTTTTCTT 59.010 33.333 0.00 0.00 0.00 2.52
472 480 8.744568 ACTGAACTCATCTTCTTCTTTTCTTT 57.255 30.769 0.00 0.00 0.00 2.52
473 481 9.183368 ACTGAACTCATCTTCTTCTTTTCTTTT 57.817 29.630 0.00 0.00 0.00 2.27
498 506 2.700722 GGGGGACTGAACTCATCTTC 57.299 55.000 0.00 0.00 0.00 2.87
501 509 2.626840 GGGACTGAACTCATCTTCTGC 58.373 52.381 0.00 0.00 0.00 4.26
636 655 9.460019 AAAGAAAAATGGAATTCAAAGAAACCA 57.540 25.926 7.93 9.97 33.67 3.67
667 708 4.096532 GCACCCTTAAATTGAGGAACTAGC 59.903 45.833 5.27 0.00 41.55 3.42
793 851 2.643551 CCCTTGCACGGAATTATCAGT 58.356 47.619 11.54 0.00 34.06 3.41
794 852 2.614057 CCCTTGCACGGAATTATCAGTC 59.386 50.000 11.54 0.00 31.17 3.51
795 853 3.535561 CCTTGCACGGAATTATCAGTCT 58.464 45.455 2.29 0.00 31.17 3.24
796 854 3.941483 CCTTGCACGGAATTATCAGTCTT 59.059 43.478 2.29 0.00 31.17 3.01
797 855 4.201851 CCTTGCACGGAATTATCAGTCTTG 60.202 45.833 2.29 0.00 31.17 3.02
798 856 4.200838 TGCACGGAATTATCAGTCTTGA 57.799 40.909 0.00 0.00 37.81 3.02
799 857 3.932710 TGCACGGAATTATCAGTCTTGAC 59.067 43.478 0.00 0.00 35.83 3.18
824 882 8.486210 ACTCTTGAGATGCACCAACTATATTAA 58.514 33.333 4.49 0.00 0.00 1.40
861 919 4.319694 GCAAATTTTCCATGGTGCAGTTTC 60.320 41.667 12.58 0.00 32.29 2.78
864 922 4.751767 TTTTCCATGGTGCAGTTTCTTT 57.248 36.364 12.58 0.00 0.00 2.52
865 923 5.860941 TTTTCCATGGTGCAGTTTCTTTA 57.139 34.783 12.58 0.00 0.00 1.85
866 924 4.846779 TTCCATGGTGCAGTTTCTTTAC 57.153 40.909 12.58 0.00 0.00 2.01
868 926 4.211125 TCCATGGTGCAGTTTCTTTACAA 58.789 39.130 12.58 0.00 0.00 2.41
869 927 4.278170 TCCATGGTGCAGTTTCTTTACAAG 59.722 41.667 12.58 0.00 0.00 3.16
874 932 6.584488 TGGTGCAGTTTCTTTACAAGTACTA 58.416 36.000 0.00 0.00 0.00 1.82
875 933 7.049133 TGGTGCAGTTTCTTTACAAGTACTAA 58.951 34.615 0.00 0.00 0.00 2.24
876 934 7.011669 TGGTGCAGTTTCTTTACAAGTACTAAC 59.988 37.037 0.00 0.00 0.00 2.34
877 935 7.350467 GTGCAGTTTCTTTACAAGTACTAACC 58.650 38.462 0.00 0.00 0.00 2.85
878 936 7.011669 GTGCAGTTTCTTTACAAGTACTAACCA 59.988 37.037 0.00 0.00 0.00 3.67
879 937 7.011669 TGCAGTTTCTTTACAAGTACTAACCAC 59.988 37.037 0.00 0.00 0.00 4.16
880 938 7.561556 CAGTTTCTTTACAAGTACTAACCACG 58.438 38.462 0.00 0.00 0.00 4.94
881 939 7.223387 CAGTTTCTTTACAAGTACTAACCACGT 59.777 37.037 0.00 0.00 0.00 4.49
882 940 7.223387 AGTTTCTTTACAAGTACTAACCACGTG 59.777 37.037 9.08 9.08 0.00 4.49
883 941 6.389830 TCTTTACAAGTACTAACCACGTGA 57.610 37.500 19.30 0.00 0.00 4.35
884 942 6.804677 TCTTTACAAGTACTAACCACGTGAA 58.195 36.000 19.30 0.67 0.00 3.18
885 943 7.264221 TCTTTACAAGTACTAACCACGTGAAA 58.736 34.615 19.30 3.62 0.00 2.69
886 944 6.826893 TTACAAGTACTAACCACGTGAAAC 57.173 37.500 19.30 5.53 0.00 2.78
887 945 4.757594 ACAAGTACTAACCACGTGAAACA 58.242 39.130 19.30 0.00 35.74 2.83
888 946 5.177326 ACAAGTACTAACCACGTGAAACAA 58.823 37.500 19.30 0.00 35.74 2.83
900 958 4.553429 CACGTGAAACAAAACTGTGTTCTC 59.447 41.667 10.90 0.00 40.86 2.87
917 978 7.676640 TGTGTTCTCGCAGAAAACAATCTGAT 61.677 38.462 15.34 0.00 46.37 2.90
925 986 4.331968 AGAAAACAATCTGATACGCCCAA 58.668 39.130 0.00 0.00 0.00 4.12
942 1003 2.242043 CCAAACCCTGACTGCTCAAAT 58.758 47.619 0.00 0.00 0.00 2.32
949 1010 2.005451 CTGACTGCTCAAATTCCTCCG 58.995 52.381 0.00 0.00 0.00 4.63
952 1013 2.930682 GACTGCTCAAATTCCTCCGTAC 59.069 50.000 0.00 0.00 0.00 3.67
954 1015 2.932614 CTGCTCAAATTCCTCCGTACAG 59.067 50.000 0.00 0.00 0.00 2.74
959 1020 3.194968 TCAAATTCCTCCGTACAGTCCTC 59.805 47.826 0.00 0.00 0.00 3.71
963 1024 0.611062 CCTCCGTACAGTCCTCACCA 60.611 60.000 0.00 0.00 0.00 4.17
1014 1075 1.750193 GAGACATGGGCGAAATTCCA 58.250 50.000 0.00 0.00 37.46 3.53
1108 1169 3.749064 GGTGCGAGCTGGACGAGA 61.749 66.667 0.00 0.00 40.35 4.04
1127 1188 1.077930 CCATGCTGGACACCCTGAG 60.078 63.158 0.00 0.00 40.96 3.35
1201 1262 1.444119 GCCAAGAAGCACCGACAACA 61.444 55.000 0.00 0.00 0.00 3.33
1371 1435 3.545481 GAGATGTGCGACGTGGCG 61.545 66.667 17.92 5.09 35.06 5.69
1380 1444 2.654877 GACGTGGCGGAGGAGAAA 59.345 61.111 0.00 0.00 0.00 2.52
1413 1477 2.434884 ATGAAGTGCCAGGTCGCG 60.435 61.111 0.00 0.00 0.00 5.87
1485 1552 1.009078 CGATGGTCGAGGTGTACGTA 58.991 55.000 0.00 0.00 43.74 3.57
1780 1855 1.003839 CAGGTGCTACAAGCCGGAA 60.004 57.895 5.05 0.00 41.51 4.30
1817 1892 1.127397 TCGACTACGACAGCTTGTACG 59.873 52.381 0.00 0.00 43.81 3.67
1828 1903 1.064296 CTTGTACGCGAGATCGGCT 59.936 57.895 15.93 0.00 40.23 5.52
1829 1904 1.202973 CTTGTACGCGAGATCGGCTG 61.203 60.000 15.93 6.28 40.23 4.85
1830 1905 2.353607 GTACGCGAGATCGGCTGG 60.354 66.667 15.93 0.00 40.23 4.85
1831 1906 4.266070 TACGCGAGATCGGCTGGC 62.266 66.667 15.93 3.78 44.00 4.85
1835 1910 4.598894 CGAGATCGGCTGGCCTGG 62.599 72.222 12.06 1.66 35.37 4.45
1836 1911 3.157252 GAGATCGGCTGGCCTGGA 61.157 66.667 12.06 1.30 0.00 3.86
1837 1912 3.453070 GAGATCGGCTGGCCTGGAC 62.453 68.421 12.06 0.00 0.00 4.02
1838 1913 4.554036 GATCGGCTGGCCTGGACC 62.554 72.222 12.06 4.04 0.00 4.46
1882 1957 2.651361 CTCTCGTGGTTCACCGCT 59.349 61.111 7.91 0.00 44.11 5.52
1927 2002 2.507944 CTGGGCATCTTCCTCGGG 59.492 66.667 0.00 0.00 0.00 5.14
2035 2110 2.301870 ACTCTGAACGGTAGCATTCCAA 59.698 45.455 0.00 0.00 0.00 3.53
2049 2124 2.636647 TTCCAACATGTCACAGAGCA 57.363 45.000 0.00 0.00 0.00 4.26
2138 2224 5.516044 TGTAGATCCTCTTGCCTGTTACTA 58.484 41.667 0.00 0.00 0.00 1.82
2139 2225 6.136857 TGTAGATCCTCTTGCCTGTTACTAT 58.863 40.000 0.00 0.00 0.00 2.12
2435 2524 4.201812 GCTGCGATGCACTTTGTAATTCTA 60.202 41.667 0.00 0.00 33.79 2.10
2722 2812 7.269316 GGTTTAAACCCATGGTTATGTATTGG 58.731 38.462 24.50 0.00 46.20 3.16
2723 2813 7.269316 GTTTAAACCCATGGTTATGTATTGGG 58.731 38.462 11.73 4.77 46.20 4.12
2729 2819 7.425224 CCCATGGTTATGTATTGGGTTTAAA 57.575 36.000 11.73 0.00 41.78 1.52
2730 2820 8.028652 CCCATGGTTATGTATTGGGTTTAAAT 57.971 34.615 11.73 0.00 41.78 1.40
2731 2821 8.490311 CCCATGGTTATGTATTGGGTTTAAATT 58.510 33.333 11.73 0.00 41.78 1.82
2732 2822 9.323985 CCATGGTTATGTATTGGGTTTAAATTG 57.676 33.333 2.57 0.00 32.21 2.32
2733 2823 9.323985 CATGGTTATGTATTGGGTTTAAATTGG 57.676 33.333 0.00 0.00 0.00 3.16
2734 2824 8.437274 TGGTTATGTATTGGGTTTAAATTGGT 57.563 30.769 0.00 0.00 0.00 3.67
2735 2825 8.881262 TGGTTATGTATTGGGTTTAAATTGGTT 58.119 29.630 0.00 0.00 0.00 3.67
2736 2826 9.727859 GGTTATGTATTGGGTTTAAATTGGTTT 57.272 29.630 0.00 0.00 0.00 3.27
2738 2828 9.726438 TTATGTATTGGGTTTAAATTGGTTTGG 57.274 29.630 0.00 0.00 0.00 3.28
2739 2829 6.534634 TGTATTGGGTTTAAATTGGTTTGGG 58.465 36.000 0.00 0.00 0.00 4.12
2740 2830 5.654901 ATTGGGTTTAAATTGGTTTGGGT 57.345 34.783 0.00 0.00 0.00 4.51
2741 2831 4.423625 TGGGTTTAAATTGGTTTGGGTG 57.576 40.909 0.00 0.00 0.00 4.61
2742 2832 3.136626 TGGGTTTAAATTGGTTTGGGTGG 59.863 43.478 0.00 0.00 0.00 4.61
2743 2833 3.391626 GGGTTTAAATTGGTTTGGGTGGA 59.608 43.478 0.00 0.00 0.00 4.02
2744 2834 4.141459 GGGTTTAAATTGGTTTGGGTGGAA 60.141 41.667 0.00 0.00 0.00 3.53
2745 2835 5.437946 GGTTTAAATTGGTTTGGGTGGAAA 58.562 37.500 0.00 0.00 0.00 3.13
2746 2836 5.886474 GGTTTAAATTGGTTTGGGTGGAAAA 59.114 36.000 0.00 0.00 0.00 2.29
2747 2837 6.377429 GGTTTAAATTGGTTTGGGTGGAAAAA 59.623 34.615 0.00 0.00 0.00 1.94
2835 2925 8.088463 TGGTTGGGCTGAAAATGATATTAAAT 57.912 30.769 0.00 0.00 0.00 1.40
2903 2994 9.920946 ATGGTTCAAGTATGGTTTAAGTATGAT 57.079 29.630 0.00 0.00 0.00 2.45
2934 3025 9.547753 TTCTCAGATTTAACTATATGGAAGCAC 57.452 33.333 0.00 0.00 0.00 4.40
2935 3026 8.928448 TCTCAGATTTAACTATATGGAAGCACT 58.072 33.333 0.00 0.00 0.00 4.40
2936 3027 9.553064 CTCAGATTTAACTATATGGAAGCACTT 57.447 33.333 0.00 0.00 0.00 3.16
2937 3028 9.330063 TCAGATTTAACTATATGGAAGCACTTG 57.670 33.333 0.00 0.00 0.00 3.16
2938 3029 8.072567 CAGATTTAACTATATGGAAGCACTTGC 58.927 37.037 0.00 0.00 42.49 4.01
2939 3030 6.693315 TTTAACTATATGGAAGCACTTGCC 57.307 37.500 0.00 0.00 43.38 4.52
2940 3031 4.510167 AACTATATGGAAGCACTTGCCT 57.490 40.909 0.00 0.00 43.38 4.75
2941 3032 4.510167 ACTATATGGAAGCACTTGCCTT 57.490 40.909 0.00 0.00 43.38 4.35
2942 3033 4.202441 ACTATATGGAAGCACTTGCCTTG 58.798 43.478 0.00 0.00 43.38 3.61
2943 3034 1.176527 TATGGAAGCACTTGCCTTGC 58.823 50.000 0.00 0.00 43.38 4.01
2944 3035 1.538687 ATGGAAGCACTTGCCTTGCC 61.539 55.000 0.00 0.00 41.18 4.52
2945 3036 2.653115 GAAGCACTTGCCTTGCCC 59.347 61.111 0.00 0.00 41.18 5.36
2946 3037 1.905354 GAAGCACTTGCCTTGCCCT 60.905 57.895 0.00 0.00 41.18 5.19
2947 3038 2.151049 GAAGCACTTGCCTTGCCCTG 62.151 60.000 0.00 0.00 41.18 4.45
2948 3039 4.368543 GCACTTGCCTTGCCCTGC 62.369 66.667 0.00 0.00 33.58 4.85
2949 3040 2.599578 CACTTGCCTTGCCCTGCT 60.600 61.111 0.00 0.00 0.00 4.24
2950 3041 2.599578 ACTTGCCTTGCCCTGCTG 60.600 61.111 0.00 0.00 0.00 4.41
2951 3042 2.282674 CTTGCCTTGCCCTGCTGA 60.283 61.111 0.00 0.00 0.00 4.26
2952 3043 1.681327 CTTGCCTTGCCCTGCTGAT 60.681 57.895 0.00 0.00 0.00 2.90
2953 3044 1.945354 CTTGCCTTGCCCTGCTGATG 61.945 60.000 0.00 0.00 0.00 3.07
2954 3045 2.362120 GCCTTGCCCTGCTGATGT 60.362 61.111 0.00 0.00 0.00 3.06
2955 3046 1.980772 GCCTTGCCCTGCTGATGTT 60.981 57.895 0.00 0.00 0.00 2.71
2956 3047 1.941999 GCCTTGCCCTGCTGATGTTC 61.942 60.000 0.00 0.00 0.00 3.18
2957 3048 0.609957 CCTTGCCCTGCTGATGTTCA 60.610 55.000 0.00 0.00 0.00 3.18
2958 3049 1.471119 CTTGCCCTGCTGATGTTCAT 58.529 50.000 0.00 0.00 0.00 2.57
2959 3050 1.404391 CTTGCCCTGCTGATGTTCATC 59.596 52.381 5.91 5.91 0.00 2.92
2960 3051 0.745486 TGCCCTGCTGATGTTCATCG 60.745 55.000 8.04 4.85 0.00 3.84
2961 3052 0.745845 GCCCTGCTGATGTTCATCGT 60.746 55.000 8.04 0.00 0.00 3.73
2962 3053 1.742761 CCCTGCTGATGTTCATCGTT 58.257 50.000 8.04 0.00 0.00 3.85
2963 3054 1.667724 CCCTGCTGATGTTCATCGTTC 59.332 52.381 8.04 1.56 0.00 3.95
2964 3055 2.625737 CCTGCTGATGTTCATCGTTCT 58.374 47.619 8.04 0.00 0.00 3.01
2965 3056 2.350804 CCTGCTGATGTTCATCGTTCTG 59.649 50.000 8.04 4.42 0.00 3.02
2966 3057 1.733912 TGCTGATGTTCATCGTTCTGC 59.266 47.619 8.04 7.54 0.00 4.26
2967 3058 2.005451 GCTGATGTTCATCGTTCTGCT 58.995 47.619 8.04 0.00 0.00 4.24
2968 3059 3.190079 GCTGATGTTCATCGTTCTGCTA 58.810 45.455 8.04 0.00 0.00 3.49
2969 3060 3.618594 GCTGATGTTCATCGTTCTGCTAA 59.381 43.478 8.04 0.00 0.00 3.09
2970 3061 4.272018 GCTGATGTTCATCGTTCTGCTAAT 59.728 41.667 8.04 0.00 0.00 1.73
2971 3062 5.220739 GCTGATGTTCATCGTTCTGCTAATT 60.221 40.000 8.04 0.00 0.00 1.40
2972 3063 6.349973 TGATGTTCATCGTTCTGCTAATTC 57.650 37.500 8.04 0.00 0.00 2.17
2973 3064 5.874261 TGATGTTCATCGTTCTGCTAATTCA 59.126 36.000 8.04 0.00 0.00 2.57
2974 3065 6.371271 TGATGTTCATCGTTCTGCTAATTCAA 59.629 34.615 8.04 0.00 0.00 2.69
2975 3066 6.552859 TGTTCATCGTTCTGCTAATTCAAA 57.447 33.333 0.00 0.00 0.00 2.69
2976 3067 7.144722 TGTTCATCGTTCTGCTAATTCAAAT 57.855 32.000 0.00 0.00 0.00 2.32
2977 3068 7.022979 TGTTCATCGTTCTGCTAATTCAAATG 58.977 34.615 0.00 0.00 0.00 2.32
2978 3069 6.741992 TCATCGTTCTGCTAATTCAAATGT 57.258 33.333 0.00 0.00 0.00 2.71
2979 3070 7.144722 TCATCGTTCTGCTAATTCAAATGTT 57.855 32.000 0.00 0.00 0.00 2.71
2980 3071 7.243487 TCATCGTTCTGCTAATTCAAATGTTC 58.757 34.615 0.00 0.00 0.00 3.18
2981 3072 5.938322 TCGTTCTGCTAATTCAAATGTTCC 58.062 37.500 0.00 0.00 0.00 3.62
2982 3073 5.095490 CGTTCTGCTAATTCAAATGTTCCC 58.905 41.667 0.00 0.00 0.00 3.97
2983 3074 5.106157 CGTTCTGCTAATTCAAATGTTCCCT 60.106 40.000 0.00 0.00 0.00 4.20
2984 3075 6.325596 GTTCTGCTAATTCAAATGTTCCCTC 58.674 40.000 0.00 0.00 0.00 4.30
2985 3076 4.635765 TCTGCTAATTCAAATGTTCCCTCG 59.364 41.667 0.00 0.00 0.00 4.63
2986 3077 3.128589 TGCTAATTCAAATGTTCCCTCGC 59.871 43.478 0.00 0.00 0.00 5.03
2987 3078 2.919666 AATTCAAATGTTCCCTCGCG 57.080 45.000 0.00 0.00 0.00 5.87
2988 3079 1.821216 ATTCAAATGTTCCCTCGCGT 58.179 45.000 5.77 0.00 0.00 6.01
2989 3080 1.600023 TTCAAATGTTCCCTCGCGTT 58.400 45.000 5.77 0.00 0.00 4.84
2990 3081 0.871722 TCAAATGTTCCCTCGCGTTG 59.128 50.000 5.77 0.00 0.00 4.10
2991 3082 0.729140 CAAATGTTCCCTCGCGTTGC 60.729 55.000 5.77 0.00 0.00 4.17
2992 3083 1.169661 AAATGTTCCCTCGCGTTGCA 61.170 50.000 5.77 0.00 0.00 4.08
2993 3084 1.169661 AATGTTCCCTCGCGTTGCAA 61.170 50.000 5.77 0.00 0.00 4.08
2994 3085 1.169661 ATGTTCCCTCGCGTTGCAAA 61.170 50.000 5.77 0.00 0.00 3.68
2995 3086 1.370051 GTTCCCTCGCGTTGCAAAC 60.370 57.895 5.77 2.23 45.31 2.93
2996 3087 1.525077 TTCCCTCGCGTTGCAAACT 60.525 52.632 5.77 0.00 46.99 2.66
2997 3088 1.098712 TTCCCTCGCGTTGCAAACTT 61.099 50.000 5.77 0.00 46.99 2.66
2998 3089 1.370414 CCCTCGCGTTGCAAACTTG 60.370 57.895 5.77 0.00 46.99 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 0.955919 GTCCAAAAGCCACCTCCTCG 60.956 60.000 0.00 0.00 0.00 4.63
152 154 2.633657 GCACGAACTGCACTGTGG 59.366 61.111 10.21 0.00 46.29 4.17
182 184 2.835895 GCCTCTCCCTCCGTCCTC 60.836 72.222 0.00 0.00 0.00 3.71
208 210 2.027192 GGTCCACTTACCAGATTCAGCA 60.027 50.000 0.00 0.00 39.50 4.41
226 234 3.135530 ACTTGCATGGAGAGAATAGGGTC 59.864 47.826 4.44 0.00 0.00 4.46
234 242 3.698539 CAGAGTAGACTTGCATGGAGAGA 59.301 47.826 4.44 0.00 0.00 3.10
244 252 5.614923 TCGAAGAACTCAGAGTAGACTTG 57.385 43.478 16.97 11.62 0.00 3.16
276 284 8.306038 CAAAATGATGAAACCTCTGTATTTCCA 58.694 33.333 0.00 0.00 34.52 3.53
479 487 2.093235 CAGAAGATGAGTTCAGTCCCCC 60.093 54.545 0.00 0.00 0.00 5.40
480 488 2.679349 GCAGAAGATGAGTTCAGTCCCC 60.679 54.545 0.00 0.00 0.00 4.81
481 489 2.626840 GCAGAAGATGAGTTCAGTCCC 58.373 52.381 0.00 0.00 0.00 4.46
482 490 2.235898 AGGCAGAAGATGAGTTCAGTCC 59.764 50.000 0.00 0.00 0.00 3.85
483 491 3.608316 AGGCAGAAGATGAGTTCAGTC 57.392 47.619 0.00 0.00 0.00 3.51
484 492 3.072184 ACAAGGCAGAAGATGAGTTCAGT 59.928 43.478 0.00 0.00 0.00 3.41
485 493 3.672808 ACAAGGCAGAAGATGAGTTCAG 58.327 45.455 0.00 0.00 0.00 3.02
486 494 3.777106 ACAAGGCAGAAGATGAGTTCA 57.223 42.857 0.00 0.00 0.00 3.18
487 495 4.322567 AGAACAAGGCAGAAGATGAGTTC 58.677 43.478 0.00 0.00 35.58 3.01
488 496 4.363991 AGAACAAGGCAGAAGATGAGTT 57.636 40.909 0.00 0.00 0.00 3.01
489 497 5.046014 ACATAGAACAAGGCAGAAGATGAGT 60.046 40.000 0.00 0.00 0.00 3.41
490 498 5.426504 ACATAGAACAAGGCAGAAGATGAG 58.573 41.667 0.00 0.00 0.00 2.90
491 499 5.426689 ACATAGAACAAGGCAGAAGATGA 57.573 39.130 0.00 0.00 0.00 2.92
492 500 5.879223 AGAACATAGAACAAGGCAGAAGATG 59.121 40.000 0.00 0.00 0.00 2.90
493 501 6.059787 AGAACATAGAACAAGGCAGAAGAT 57.940 37.500 0.00 0.00 0.00 2.40
494 502 5.489792 AGAACATAGAACAAGGCAGAAGA 57.510 39.130 0.00 0.00 0.00 2.87
495 503 5.471456 ACAAGAACATAGAACAAGGCAGAAG 59.529 40.000 0.00 0.00 0.00 2.85
496 504 5.376625 ACAAGAACATAGAACAAGGCAGAA 58.623 37.500 0.00 0.00 0.00 3.02
497 505 4.973168 ACAAGAACATAGAACAAGGCAGA 58.027 39.130 0.00 0.00 0.00 4.26
498 506 4.999950 AGACAAGAACATAGAACAAGGCAG 59.000 41.667 0.00 0.00 0.00 4.85
501 509 6.234177 AGGAAGACAAGAACATAGAACAAGG 58.766 40.000 0.00 0.00 0.00 3.61
610 625 9.460019 TGGTTTCTTTGAATTCCATTTTTCTTT 57.540 25.926 2.27 0.00 0.00 2.52
611 626 9.112725 CTGGTTTCTTTGAATTCCATTTTTCTT 57.887 29.630 2.27 0.00 0.00 2.52
612 627 8.267183 ACTGGTTTCTTTGAATTCCATTTTTCT 58.733 29.630 2.27 0.00 0.00 2.52
636 655 3.055385 TCAATTTAAGGGTGCGCTCTACT 60.055 43.478 9.73 5.14 0.00 2.57
667 708 6.017440 TCTCAAAGGGAACACATAAAACTTCG 60.017 38.462 0.00 0.00 0.00 3.79
793 851 2.634453 TGGTGCATCTCAAGAGTCAAGA 59.366 45.455 0.00 0.00 0.00 3.02
794 852 3.049708 TGGTGCATCTCAAGAGTCAAG 57.950 47.619 0.00 0.00 0.00 3.02
795 853 3.141398 GTTGGTGCATCTCAAGAGTCAA 58.859 45.455 0.00 0.00 0.00 3.18
796 854 2.369860 AGTTGGTGCATCTCAAGAGTCA 59.630 45.455 0.00 0.00 0.00 3.41
797 855 3.051081 AGTTGGTGCATCTCAAGAGTC 57.949 47.619 0.00 0.00 0.00 3.36
798 856 4.833478 ATAGTTGGTGCATCTCAAGAGT 57.167 40.909 0.00 0.00 0.00 3.24
799 857 8.893219 TTAATATAGTTGGTGCATCTCAAGAG 57.107 34.615 0.00 0.00 0.00 2.85
824 882 6.183361 TGGAAAATTTGCATTTGGGTAGTTCT 60.183 34.615 0.00 0.00 32.57 3.01
864 922 5.900425 TGTTTCACGTGGTTAGTACTTGTA 58.100 37.500 17.00 0.00 0.00 2.41
865 923 4.757594 TGTTTCACGTGGTTAGTACTTGT 58.242 39.130 17.00 0.00 0.00 3.16
866 924 5.721876 TTGTTTCACGTGGTTAGTACTTG 57.278 39.130 17.00 0.00 0.00 3.16
868 926 5.876460 AGTTTTGTTTCACGTGGTTAGTACT 59.124 36.000 17.00 0.00 0.00 2.73
869 927 5.961263 CAGTTTTGTTTCACGTGGTTAGTAC 59.039 40.000 17.00 6.56 0.00 2.73
874 932 3.004944 ACACAGTTTTGTTTCACGTGGTT 59.995 39.130 17.00 0.00 34.62 3.67
875 933 2.554893 ACACAGTTTTGTTTCACGTGGT 59.445 40.909 17.00 0.00 34.62 4.16
876 934 3.210358 ACACAGTTTTGTTTCACGTGG 57.790 42.857 17.00 0.00 34.62 4.94
877 935 4.472286 AGAACACAGTTTTGTTTCACGTG 58.528 39.130 9.94 9.94 39.88 4.49
878 936 4.668177 CGAGAACACAGTTTTGTTTCACGT 60.668 41.667 0.00 0.00 39.88 4.49
879 937 3.778718 CGAGAACACAGTTTTGTTTCACG 59.221 43.478 0.00 0.00 39.88 4.35
880 938 3.542310 GCGAGAACACAGTTTTGTTTCAC 59.458 43.478 0.00 0.00 39.88 3.18
881 939 3.189495 TGCGAGAACACAGTTTTGTTTCA 59.811 39.130 0.00 0.00 39.88 2.69
882 940 3.753842 TGCGAGAACACAGTTTTGTTTC 58.246 40.909 0.00 0.00 39.88 2.78
883 941 3.438781 TCTGCGAGAACACAGTTTTGTTT 59.561 39.130 0.00 0.00 39.88 2.83
884 942 3.006940 TCTGCGAGAACACAGTTTTGTT 58.993 40.909 0.00 0.00 42.55 2.83
885 943 2.627945 TCTGCGAGAACACAGTTTTGT 58.372 42.857 0.00 0.00 38.31 2.83
886 944 3.673746 TTCTGCGAGAACACAGTTTTG 57.326 42.857 0.00 0.00 35.37 2.44
887 945 4.083003 TGTTTTCTGCGAGAACACAGTTTT 60.083 37.500 11.41 0.00 39.25 2.43
888 946 3.438781 TGTTTTCTGCGAGAACACAGTTT 59.561 39.130 11.41 0.00 39.25 2.66
900 958 3.345714 GCGTATCAGATTGTTTTCTGCG 58.654 45.455 0.00 0.00 42.37 5.18
911 972 1.134098 CAGGGTTTGGGCGTATCAGAT 60.134 52.381 0.00 0.00 0.00 2.90
917 978 1.373435 CAGTCAGGGTTTGGGCGTA 59.627 57.895 0.00 0.00 0.00 4.42
925 986 2.108952 AGGAATTTGAGCAGTCAGGGTT 59.891 45.455 0.00 0.00 32.98 4.11
942 1003 1.542492 GTGAGGACTGTACGGAGGAA 58.458 55.000 9.17 0.00 0.00 3.36
949 1010 3.314541 AATTCGTGGTGAGGACTGTAC 57.685 47.619 0.00 0.00 0.00 2.90
952 1013 2.738846 CTCAAATTCGTGGTGAGGACTG 59.261 50.000 0.00 0.00 36.04 3.51
954 1015 1.464997 GCTCAAATTCGTGGTGAGGAC 59.535 52.381 6.29 0.00 39.36 3.85
959 1020 3.300009 GAAGTTGCTCAAATTCGTGGTG 58.700 45.455 6.98 0.00 36.01 4.17
1099 1160 4.509756 CAGCATGGTCTCGTCCAG 57.490 61.111 0.00 0.00 41.05 3.86
1371 1435 2.555448 CCACCCCTTCTTTTTCTCCTCC 60.555 54.545 0.00 0.00 0.00 4.30
1372 1436 2.555448 CCCACCCCTTCTTTTTCTCCTC 60.555 54.545 0.00 0.00 0.00 3.71
1373 1437 1.429299 CCCACCCCTTCTTTTTCTCCT 59.571 52.381 0.00 0.00 0.00 3.69
1378 1442 2.178984 TCATGACCCACCCCTTCTTTTT 59.821 45.455 0.00 0.00 0.00 1.94
1380 1444 1.455822 TCATGACCCACCCCTTCTTT 58.544 50.000 0.00 0.00 0.00 2.52
1458 1525 1.586564 CTCGACCATCGGCGACTTC 60.587 63.158 13.76 8.00 40.88 3.01
1510 1577 0.036388 ATCGCCTTGGTGAACACGAT 60.036 50.000 7.02 0.00 32.87 3.73
1980 2055 3.231889 ATCAGCCGCCGCCTCATAG 62.232 63.158 0.00 0.00 34.57 2.23
2002 2077 0.833409 TTCAGAGTCAGAGCAGGCCA 60.833 55.000 5.01 0.00 0.00 5.36
2035 2110 0.607489 GCCCTTGCTCTGTGACATGT 60.607 55.000 0.00 0.00 33.53 3.21
2049 2124 1.900498 GCAGAGTTGCTGTGCCCTT 60.900 57.895 6.97 0.00 43.60 3.95
2091 2169 3.133721 ACACATCCAGCAGAGTAATCTCC 59.866 47.826 0.00 0.00 41.26 3.71
2138 2224 8.285891 TGAATAACCATTCCCAGGTTTACATAT 58.714 33.333 2.64 0.00 46.85 1.78
2139 2225 7.644062 TGAATAACCATTCCCAGGTTTACATA 58.356 34.615 2.64 0.00 46.85 2.29
2478 2567 2.767960 CCCAATTCCTTAGCCAAAGCAT 59.232 45.455 0.00 0.00 43.56 3.79
2715 2805 6.101296 ACCCAAACCAATTTAAACCCAATACA 59.899 34.615 0.00 0.00 0.00 2.29
2716 2806 6.428465 CACCCAAACCAATTTAAACCCAATAC 59.572 38.462 0.00 0.00 0.00 1.89
2717 2807 6.465894 CCACCCAAACCAATTTAAACCCAATA 60.466 38.462 0.00 0.00 0.00 1.90
2718 2808 5.380900 CACCCAAACCAATTTAAACCCAAT 58.619 37.500 0.00 0.00 0.00 3.16
2719 2809 4.385310 CCACCCAAACCAATTTAAACCCAA 60.385 41.667 0.00 0.00 0.00 4.12
2720 2810 3.136626 CCACCCAAACCAATTTAAACCCA 59.863 43.478 0.00 0.00 0.00 4.51
2721 2811 3.391626 TCCACCCAAACCAATTTAAACCC 59.608 43.478 0.00 0.00 0.00 4.11
2722 2812 4.691326 TCCACCCAAACCAATTTAAACC 57.309 40.909 0.00 0.00 0.00 3.27
2723 2813 7.392494 TTTTTCCACCCAAACCAATTTAAAC 57.608 32.000 0.00 0.00 0.00 2.01
2744 2834 9.487442 ACCCAATACATAACCATCACTATTTTT 57.513 29.630 0.00 0.00 0.00 1.94
2745 2835 9.487442 AACCCAATACATAACCATCACTATTTT 57.513 29.630 0.00 0.00 0.00 1.82
2746 2836 9.487442 AAACCCAATACATAACCATCACTATTT 57.513 29.630 0.00 0.00 0.00 1.40
2749 2839 9.976776 TTTAAACCCAATACATAACCATCACTA 57.023 29.630 0.00 0.00 0.00 2.74
2750 2840 8.887264 TTTAAACCCAATACATAACCATCACT 57.113 30.769 0.00 0.00 0.00 3.41
2753 2843 9.541143 CCAATTTAAACCCAATACATAACCATC 57.459 33.333 0.00 0.00 0.00 3.51
2754 2844 9.052365 ACCAATTTAAACCCAATACATAACCAT 57.948 29.630 0.00 0.00 0.00 3.55
2755 2845 8.437274 ACCAATTTAAACCCAATACATAACCA 57.563 30.769 0.00 0.00 0.00 3.67
2756 2846 9.727859 AAACCAATTTAAACCCAATACATAACC 57.272 29.630 0.00 0.00 0.00 2.85
2758 2848 9.726438 CCAAACCAATTTAAACCCAATACATAA 57.274 29.630 0.00 0.00 0.00 1.90
2759 2849 8.322091 CCCAAACCAATTTAAACCCAATACATA 58.678 33.333 0.00 0.00 0.00 2.29
2760 2850 7.171653 CCCAAACCAATTTAAACCCAATACAT 58.828 34.615 0.00 0.00 0.00 2.29
2835 2925 8.642935 TCAAAATCATACTTGAACCATAACCA 57.357 30.769 0.00 0.00 34.96 3.67
2854 2944 7.816031 CCATACCCGTATACGTATTCTCAAAAT 59.184 37.037 22.87 0.00 37.74 1.82
2921 3012 3.004106 GCAAGGCAAGTGCTTCCATATAG 59.996 47.826 2.85 0.00 41.70 1.31
2925 3016 1.538687 GGCAAGGCAAGTGCTTCCAT 61.539 55.000 2.85 0.00 41.88 3.41
2926 3017 2.202395 GGCAAGGCAAGTGCTTCCA 61.202 57.895 2.85 0.00 41.88 3.53
2927 3018 2.653115 GGCAAGGCAAGTGCTTCC 59.347 61.111 2.85 0.00 41.88 3.46
2928 3019 1.905354 AGGGCAAGGCAAGTGCTTC 60.905 57.895 2.85 2.14 41.88 3.86
2929 3020 2.199535 AGGGCAAGGCAAGTGCTT 59.800 55.556 2.85 0.00 41.88 3.91
2930 3021 2.599578 CAGGGCAAGGCAAGTGCT 60.600 61.111 2.85 0.00 41.88 4.40
2931 3022 4.368543 GCAGGGCAAGGCAAGTGC 62.369 66.667 0.00 0.00 41.45 4.40
2932 3023 2.599578 AGCAGGGCAAGGCAAGTG 60.600 61.111 0.00 0.00 0.00 3.16
2933 3024 2.436596 ATCAGCAGGGCAAGGCAAGT 62.437 55.000 0.00 0.00 0.00 3.16
2934 3025 1.681327 ATCAGCAGGGCAAGGCAAG 60.681 57.895 0.00 0.00 0.00 4.01
2935 3026 1.980232 CATCAGCAGGGCAAGGCAA 60.980 57.895 0.00 0.00 0.00 4.52
2936 3027 2.361992 CATCAGCAGGGCAAGGCA 60.362 61.111 0.00 0.00 0.00 4.75
2937 3028 1.941999 GAACATCAGCAGGGCAAGGC 61.942 60.000 0.00 0.00 0.00 4.35
2938 3029 0.609957 TGAACATCAGCAGGGCAAGG 60.610 55.000 0.00 0.00 0.00 3.61
2939 3030 1.404391 GATGAACATCAGCAGGGCAAG 59.596 52.381 9.54 0.00 37.74 4.01
2940 3031 1.466856 GATGAACATCAGCAGGGCAA 58.533 50.000 9.54 0.00 37.74 4.52
2941 3032 0.745486 CGATGAACATCAGCAGGGCA 60.745 55.000 13.92 0.00 37.69 5.36
2942 3033 0.745845 ACGATGAACATCAGCAGGGC 60.746 55.000 13.92 0.00 37.69 5.19
2943 3034 1.667724 GAACGATGAACATCAGCAGGG 59.332 52.381 13.92 0.92 37.69 4.45
2944 3035 2.350804 CAGAACGATGAACATCAGCAGG 59.649 50.000 13.92 1.52 37.69 4.85
2945 3036 2.222976 GCAGAACGATGAACATCAGCAG 60.223 50.000 13.92 1.84 37.69 4.24
2946 3037 1.733912 GCAGAACGATGAACATCAGCA 59.266 47.619 13.92 0.00 37.69 4.41
2947 3038 2.005451 AGCAGAACGATGAACATCAGC 58.995 47.619 13.92 9.25 37.69 4.26
2948 3039 5.980698 ATTAGCAGAACGATGAACATCAG 57.019 39.130 13.92 9.37 37.69 2.90
2949 3040 5.874261 TGAATTAGCAGAACGATGAACATCA 59.126 36.000 13.92 0.00 37.69 3.07
2950 3041 6.349973 TGAATTAGCAGAACGATGAACATC 57.650 37.500 4.88 4.88 34.56 3.06
2951 3042 6.741992 TTGAATTAGCAGAACGATGAACAT 57.258 33.333 0.00 0.00 0.00 2.71
2952 3043 6.552859 TTTGAATTAGCAGAACGATGAACA 57.447 33.333 0.00 0.00 0.00 3.18
2953 3044 7.023575 ACATTTGAATTAGCAGAACGATGAAC 58.976 34.615 0.00 0.00 0.00 3.18
2954 3045 7.144722 ACATTTGAATTAGCAGAACGATGAA 57.855 32.000 0.00 0.00 0.00 2.57
2955 3046 6.741992 ACATTTGAATTAGCAGAACGATGA 57.258 33.333 0.00 0.00 0.00 2.92
2956 3047 6.470235 GGAACATTTGAATTAGCAGAACGATG 59.530 38.462 0.00 0.00 0.00 3.84
2957 3048 6.404734 GGGAACATTTGAATTAGCAGAACGAT 60.405 38.462 0.00 0.00 0.00 3.73
2958 3049 5.106317 GGGAACATTTGAATTAGCAGAACGA 60.106 40.000 0.00 0.00 0.00 3.85
2959 3050 5.095490 GGGAACATTTGAATTAGCAGAACG 58.905 41.667 0.00 0.00 0.00 3.95
2960 3051 6.272822 AGGGAACATTTGAATTAGCAGAAC 57.727 37.500 0.00 0.00 0.00 3.01
2961 3052 5.123820 CGAGGGAACATTTGAATTAGCAGAA 59.876 40.000 0.00 0.00 0.00 3.02
2962 3053 4.635765 CGAGGGAACATTTGAATTAGCAGA 59.364 41.667 0.00 0.00 0.00 4.26
2963 3054 4.731773 GCGAGGGAACATTTGAATTAGCAG 60.732 45.833 0.00 0.00 0.00 4.24
2964 3055 3.128589 GCGAGGGAACATTTGAATTAGCA 59.871 43.478 0.00 0.00 0.00 3.49
2965 3056 3.695816 GCGAGGGAACATTTGAATTAGC 58.304 45.455 0.00 0.00 0.00 3.09
2966 3057 3.374058 ACGCGAGGGAACATTTGAATTAG 59.626 43.478 15.93 0.00 0.00 1.73
2967 3058 3.340034 ACGCGAGGGAACATTTGAATTA 58.660 40.909 15.93 0.00 0.00 1.40
2968 3059 2.159382 ACGCGAGGGAACATTTGAATT 58.841 42.857 15.93 0.00 0.00 2.17
2969 3060 1.821216 ACGCGAGGGAACATTTGAAT 58.179 45.000 15.93 0.00 0.00 2.57
2970 3061 1.265635 CAACGCGAGGGAACATTTGAA 59.734 47.619 15.93 0.00 0.00 2.69
2971 3062 0.871722 CAACGCGAGGGAACATTTGA 59.128 50.000 15.93 0.00 0.00 2.69
2972 3063 0.729140 GCAACGCGAGGGAACATTTG 60.729 55.000 15.93 4.28 0.00 2.32
2973 3064 1.169661 TGCAACGCGAGGGAACATTT 61.170 50.000 15.93 0.00 0.00 2.32
2974 3065 1.169661 TTGCAACGCGAGGGAACATT 61.170 50.000 15.93 0.00 0.00 2.71
2975 3066 1.169661 TTTGCAACGCGAGGGAACAT 61.170 50.000 15.93 0.00 0.00 2.71
2976 3067 1.820056 TTTGCAACGCGAGGGAACA 60.820 52.632 15.93 0.00 0.00 3.18
2977 3068 1.370051 GTTTGCAACGCGAGGGAAC 60.370 57.895 15.93 7.24 0.00 3.62
2978 3069 1.098712 AAGTTTGCAACGCGAGGGAA 61.099 50.000 15.93 9.06 36.23 3.97
2979 3070 1.525077 AAGTTTGCAACGCGAGGGA 60.525 52.632 15.93 1.61 36.23 4.20
2980 3071 1.370414 CAAGTTTGCAACGCGAGGG 60.370 57.895 15.93 1.96 36.23 4.30
2981 3072 4.210447 CAAGTTTGCAACGCGAGG 57.790 55.556 15.93 5.03 36.23 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.