Multiple sequence alignment - TraesCS4B01G234200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G234200 chr4B 100.000 5432 0 0 1 5432 488262851 488257420 0.000000e+00 10032
1 TraesCS4B01G234200 chr4A 90.571 3171 162 49 78 3192 78164138 78161049 0.000000e+00 4072
2 TraesCS4B01G234200 chr4A 92.260 801 21 11 3878 4662 78160487 78159712 0.000000e+00 1098
3 TraesCS4B01G234200 chr4A 91.743 327 14 9 3224 3547 78161052 78160736 4.990000e-120 442
4 TraesCS4B01G234200 chr4A 96.087 230 9 0 3600 3829 78160743 78160514 5.140000e-100 375
5 TraesCS4B01G234200 chr4D 90.059 2022 95 37 198 2180 396437061 396435107 0.000000e+00 2523
6 TraesCS4B01G234200 chr4D 92.521 1083 44 16 3600 4662 396433692 396432627 0.000000e+00 1517
7 TraesCS4B01G234200 chr4D 92.745 827 33 9 2171 2978 396435026 396434208 0.000000e+00 1170
8 TraesCS4B01G234200 chr4D 86.676 728 79 8 4720 5432 396432628 396431904 0.000000e+00 791
9 TraesCS4B01G234200 chr4D 91.604 536 30 12 3018 3547 396434211 396433685 0.000000e+00 726
10 TraesCS4B01G234200 chr5D 88.009 1401 102 31 1817 3202 517418916 517417567 0.000000e+00 1596
11 TraesCS4B01G234200 chr7B 90.476 105 7 3 2674 2775 296959520 296959624 9.490000e-28 135


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G234200 chr4B 488257420 488262851 5431 True 10032.00 10032 100.00000 1 5432 1 chr4B.!!$R1 5431
1 TraesCS4B01G234200 chr4A 78159712 78164138 4426 True 1496.75 4072 92.66525 78 4662 4 chr4A.!!$R1 4584
2 TraesCS4B01G234200 chr4D 396431904 396437061 5157 True 1345.40 2523 90.72100 198 5432 5 chr4D.!!$R1 5234
3 TraesCS4B01G234200 chr5D 517417567 517418916 1349 True 1596.00 1596 88.00900 1817 3202 1 chr5D.!!$R1 1385

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
74 75 0.036010 GCTACATGGGCTGTGACTGT 60.036 55.0 0.0 0.0 38.92 3.55 F
763 784 0.248743 AAATCAATGCATGAGCCGCG 60.249 50.0 0.0 0.0 42.53 6.46 F
1758 1815 0.468648 AGCTCGGGTAGGTAAATGGC 59.531 55.0 0.0 0.0 32.98 4.40 F
2142 2207 0.039165 GCTGTTGGCTGTGGCTTAAC 60.039 55.0 0.0 0.0 38.73 2.01 F
3213 3411 0.036732 ACTTCTGCCTGCATTTCGGA 59.963 50.0 0.0 0.0 0.00 4.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1553 1597 0.396811 AACAGTGACGGGGAGAAAGG 59.603 55.0 0.0 0.0 0.00 3.11 R
2014 2079 0.598065 ACGATGTGGAAGCAAAAGCC 59.402 50.0 0.0 0.0 0.00 4.35 R
3194 3392 0.036732 TCCGAAATGCAGGCAGAAGT 59.963 50.0 0.0 0.0 0.00 3.01 R
3538 3749 0.041663 CGTGCGTGGGTAACAAACTG 60.042 55.0 0.0 0.0 39.74 3.16 R
4860 5103 0.169009 GATGAGTTTTGGCGTGGCTC 59.831 55.0 0.0 0.0 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 2.489938 TCTTTTGATCGACTTGGGGG 57.510 50.000 0.00 0.00 0.00 5.40
32 33 1.702957 TCTTTTGATCGACTTGGGGGT 59.297 47.619 0.00 0.00 0.00 4.95
33 34 1.812571 CTTTTGATCGACTTGGGGGTG 59.187 52.381 0.00 0.00 0.00 4.61
34 35 1.060729 TTTGATCGACTTGGGGGTGA 58.939 50.000 0.00 0.00 0.00 4.02
35 36 0.613260 TTGATCGACTTGGGGGTGAG 59.387 55.000 0.00 0.00 0.00 3.51
36 37 0.544357 TGATCGACTTGGGGGTGAGT 60.544 55.000 0.00 0.00 0.00 3.41
37 38 1.272816 TGATCGACTTGGGGGTGAGTA 60.273 52.381 0.00 0.00 0.00 2.59
38 39 1.829222 GATCGACTTGGGGGTGAGTAA 59.171 52.381 0.00 0.00 0.00 2.24
39 40 0.971386 TCGACTTGGGGGTGAGTAAC 59.029 55.000 0.00 0.00 0.00 2.50
40 41 0.682852 CGACTTGGGGGTGAGTAACA 59.317 55.000 0.00 0.00 0.00 2.41
41 42 1.337823 CGACTTGGGGGTGAGTAACAG 60.338 57.143 0.00 0.00 0.00 3.16
42 43 1.697982 GACTTGGGGGTGAGTAACAGT 59.302 52.381 0.00 0.00 0.00 3.55
43 44 2.901839 GACTTGGGGGTGAGTAACAGTA 59.098 50.000 0.00 0.00 0.00 2.74
44 45 3.320129 ACTTGGGGGTGAGTAACAGTAA 58.680 45.455 0.00 0.00 0.00 2.24
45 46 3.072038 ACTTGGGGGTGAGTAACAGTAAC 59.928 47.826 0.00 0.00 0.00 2.50
46 47 2.692024 TGGGGGTGAGTAACAGTAACA 58.308 47.619 0.00 0.00 0.00 2.41
47 48 2.635915 TGGGGGTGAGTAACAGTAACAG 59.364 50.000 0.00 0.00 0.00 3.16
48 49 2.636403 GGGGGTGAGTAACAGTAACAGT 59.364 50.000 0.00 0.00 0.00 3.55
49 50 3.834231 GGGGGTGAGTAACAGTAACAGTA 59.166 47.826 0.00 0.00 0.00 2.74
50 51 4.284234 GGGGGTGAGTAACAGTAACAGTAA 59.716 45.833 0.00 0.00 0.00 2.24
51 52 5.233225 GGGGTGAGTAACAGTAACAGTAAC 58.767 45.833 0.00 0.00 0.00 2.50
52 53 5.221501 GGGGTGAGTAACAGTAACAGTAACA 60.222 44.000 0.00 0.00 0.00 2.41
53 54 5.924825 GGGTGAGTAACAGTAACAGTAACAG 59.075 44.000 0.00 0.00 0.00 3.16
54 55 5.924825 GGTGAGTAACAGTAACAGTAACAGG 59.075 44.000 0.00 0.00 0.00 4.00
55 56 5.924825 GTGAGTAACAGTAACAGTAACAGGG 59.075 44.000 0.00 0.00 0.00 4.45
56 57 4.891260 AGTAACAGTAACAGTAACAGGGC 58.109 43.478 0.00 0.00 0.00 5.19
57 58 4.591924 AGTAACAGTAACAGTAACAGGGCT 59.408 41.667 0.00 0.00 0.00 5.19
58 59 5.776716 AGTAACAGTAACAGTAACAGGGCTA 59.223 40.000 0.00 0.00 0.00 3.93
59 60 4.532314 ACAGTAACAGTAACAGGGCTAC 57.468 45.455 0.00 0.00 0.00 3.58
60 61 3.899360 ACAGTAACAGTAACAGGGCTACA 59.101 43.478 0.00 0.00 0.00 2.74
61 62 4.530946 ACAGTAACAGTAACAGGGCTACAT 59.469 41.667 0.00 0.00 0.00 2.29
62 63 4.870426 CAGTAACAGTAACAGGGCTACATG 59.130 45.833 0.00 0.00 0.00 3.21
63 64 3.350219 AACAGTAACAGGGCTACATGG 57.650 47.619 0.00 0.00 0.00 3.66
64 65 1.559682 ACAGTAACAGGGCTACATGGG 59.440 52.381 0.00 0.00 0.00 4.00
65 66 0.546598 AGTAACAGGGCTACATGGGC 59.453 55.000 0.00 0.50 0.00 5.36
66 67 0.546598 GTAACAGGGCTACATGGGCT 59.453 55.000 11.62 0.00 0.00 5.19
67 68 0.546122 TAACAGGGCTACATGGGCTG 59.454 55.000 11.62 6.72 0.00 4.85
68 69 1.500783 AACAGGGCTACATGGGCTGT 61.501 55.000 11.62 7.24 42.13 4.40
69 70 1.452651 CAGGGCTACATGGGCTGTG 60.453 63.158 11.62 6.73 38.92 3.66
70 71 1.616327 AGGGCTACATGGGCTGTGA 60.616 57.895 11.62 0.00 38.92 3.58
71 72 1.452108 GGGCTACATGGGCTGTGAC 60.452 63.158 11.62 0.00 38.92 3.67
72 73 1.604378 GGCTACATGGGCTGTGACT 59.396 57.895 11.62 0.00 38.92 3.41
73 74 0.745845 GGCTACATGGGCTGTGACTG 60.746 60.000 11.62 0.00 38.92 3.51
74 75 0.036010 GCTACATGGGCTGTGACTGT 60.036 55.000 0.00 0.00 38.92 3.55
75 76 1.730501 CTACATGGGCTGTGACTGTG 58.269 55.000 0.00 0.00 38.92 3.66
76 77 1.276138 CTACATGGGCTGTGACTGTGA 59.724 52.381 0.00 0.00 38.92 3.58
111 112 3.650139 GCCTGAGAAAACGACTGTAGAA 58.350 45.455 0.00 0.00 0.00 2.10
117 118 3.004524 AGAAAACGACTGTAGAAGCGAGT 59.995 43.478 0.00 0.00 32.16 4.18
119 120 2.333389 ACGACTGTAGAAGCGAGTTG 57.667 50.000 0.00 0.00 32.16 3.16
149 150 2.657297 GCCTCTTGCAACCAATGGA 58.343 52.632 6.16 0.00 40.77 3.41
150 151 0.529378 GCCTCTTGCAACCAATGGAG 59.471 55.000 6.16 0.00 40.77 3.86
192 200 4.946445 TCCGACTGTGTATTGTTTGTACA 58.054 39.130 0.00 0.00 0.00 2.90
227 235 4.248402 CGGTCGTTTGCCGTAGAA 57.752 55.556 0.00 0.00 43.84 2.10
354 362 4.814294 ATTCACGGGGCGTCGCTC 62.814 66.667 18.11 13.98 38.32 5.03
477 489 3.246112 CAACACCCCCTCCGTCCA 61.246 66.667 0.00 0.00 0.00 4.02
536 548 6.594937 CCCAAACAGCATTGCACTAATAAATT 59.405 34.615 11.91 0.00 0.00 1.82
548 563 8.962884 TGCACTAATAAATTGCTCTAGATTGA 57.037 30.769 0.00 0.00 37.16 2.57
549 564 8.830580 TGCACTAATAAATTGCTCTAGATTGAC 58.169 33.333 0.00 0.00 37.16 3.18
550 565 9.050601 GCACTAATAAATTGCTCTAGATTGACT 57.949 33.333 0.00 0.00 33.26 3.41
575 591 2.009051 CACGCAAATGCAGAGGTATCA 58.991 47.619 6.18 0.00 42.21 2.15
639 655 4.453819 GCCTACACAAATGCAGAGATATCC 59.546 45.833 0.00 0.00 0.00 2.59
654 670 3.386078 AGATATCCGCTCACTTCACACAT 59.614 43.478 0.00 0.00 0.00 3.21
665 683 4.020307 TCACTTCACACATCTGGCAATCTA 60.020 41.667 0.00 0.00 0.00 1.98
708 729 2.951642 CGCATTGGGTTAGATGGTTGAT 59.048 45.455 0.00 0.00 0.00 2.57
754 775 4.124970 CTCGATCTCCAGAAATCAATGCA 58.875 43.478 0.00 0.00 0.00 3.96
755 776 4.711399 TCGATCTCCAGAAATCAATGCAT 58.289 39.130 0.00 0.00 0.00 3.96
756 777 4.514066 TCGATCTCCAGAAATCAATGCATG 59.486 41.667 0.00 0.00 0.00 4.06
757 778 4.514066 CGATCTCCAGAAATCAATGCATGA 59.486 41.667 0.00 0.03 43.67 3.07
758 779 5.334182 CGATCTCCAGAAATCAATGCATGAG 60.334 44.000 0.00 0.00 42.53 2.90
759 780 3.630769 TCTCCAGAAATCAATGCATGAGC 59.369 43.478 0.00 0.00 42.53 4.26
760 781 2.691526 TCCAGAAATCAATGCATGAGCC 59.308 45.455 0.00 0.00 42.53 4.70
761 782 2.543031 CCAGAAATCAATGCATGAGCCG 60.543 50.000 0.00 0.00 42.53 5.52
762 783 1.066605 AGAAATCAATGCATGAGCCGC 59.933 47.619 0.00 0.00 42.53 6.53
763 784 0.248743 AAATCAATGCATGAGCCGCG 60.249 50.000 0.00 0.00 42.53 6.46
764 785 1.096967 AATCAATGCATGAGCCGCGA 61.097 50.000 8.23 0.00 42.53 5.87
765 786 1.504647 ATCAATGCATGAGCCGCGAG 61.505 55.000 8.23 0.00 42.53 5.03
766 787 2.175621 CAATGCATGAGCCGCGAGA 61.176 57.895 8.23 0.00 41.13 4.04
914 942 2.787866 CTCCCTCCCTCCCTCCAA 59.212 66.667 0.00 0.00 0.00 3.53
918 946 1.229658 CCTCCCTCCCTCCAACACT 60.230 63.158 0.00 0.00 0.00 3.55
952 980 3.620419 TACGTCGCCACCCTCCGTA 62.620 63.158 0.00 0.00 33.32 4.02
1065 1094 2.514824 GGCAGGTCCTTCATCGGC 60.515 66.667 0.00 0.00 0.00 5.54
1362 1406 2.130426 GCTGGAGAGGATCAGCGGA 61.130 63.158 0.00 0.00 45.31 5.54
1407 1451 2.368329 GGCTGGGGGAGGTGGTAT 60.368 66.667 0.00 0.00 0.00 2.73
1553 1597 1.728971 CTTCGATCACAAGTGAGCACC 59.271 52.381 17.33 2.87 45.50 5.01
1573 1617 1.202770 CCTTTCTCCCCGTCACTGTTT 60.203 52.381 0.00 0.00 0.00 2.83
1579 1623 0.602562 CCCCGTCACTGTTTACCGTA 59.397 55.000 0.00 0.00 0.00 4.02
1592 1636 5.694816 TGTTTACCGTATTGAATTGCAGTG 58.305 37.500 0.00 0.00 0.00 3.66
1607 1653 2.103094 TGCAGTGCTCTGTTTACTCTGT 59.897 45.455 17.60 0.00 43.05 3.41
1654 1703 7.440255 ACGTAAGCAGTACTTAATTTGTTGACT 59.560 33.333 0.00 0.00 42.50 3.41
1723 1772 3.057969 TGCATGTCTGTTCCCTTGTAG 57.942 47.619 0.00 0.00 0.00 2.74
1749 1806 2.337749 CTGTGCGGTAGCTCGGGTAG 62.338 65.000 0.00 0.00 45.42 3.18
1757 1814 2.036862 GGTAGCTCGGGTAGGTAAATGG 59.963 54.545 0.00 0.00 39.81 3.16
1758 1815 0.468648 AGCTCGGGTAGGTAAATGGC 59.531 55.000 0.00 0.00 32.98 4.40
1839 1896 1.886542 GTACCTTTGGTGCTTTCCTGG 59.113 52.381 0.00 0.00 36.19 4.45
1840 1897 0.469892 ACCTTTGGTGCTTTCCTGGG 60.470 55.000 0.00 0.00 32.98 4.45
1856 1913 2.299867 CCTGGGCTAAATGCAAGTGTTT 59.700 45.455 0.00 0.00 45.15 2.83
1930 1987 3.372060 TCAAGATTGCTGCTCGTATACG 58.628 45.455 19.23 19.23 41.45 3.06
1931 1988 2.423926 AGATTGCTGCTCGTATACGG 57.576 50.000 24.18 15.77 40.29 4.02
1932 1989 1.681793 AGATTGCTGCTCGTATACGGT 59.318 47.619 24.18 1.98 40.29 4.83
1933 1990 2.882761 AGATTGCTGCTCGTATACGGTA 59.117 45.455 24.18 13.47 40.29 4.02
2014 2079 4.553323 CCAATTTGTCCTTTTGCAGAGAG 58.447 43.478 1.09 0.00 0.00 3.20
2042 2107 5.079689 TGCTTCCACATCGTACATTTCTA 57.920 39.130 0.00 0.00 0.00 2.10
2098 2163 5.181245 GCATGTGTTGGTAATTAGTCACAGT 59.819 40.000 13.39 0.00 38.77 3.55
2119 2184 2.935481 AGTGCGGTACTAGTTGTAGC 57.065 50.000 0.00 3.03 43.87 3.58
2142 2207 0.039165 GCTGTTGGCTGTGGCTTAAC 60.039 55.000 0.00 0.00 38.73 2.01
2198 2357 2.514205 AACTTGTGGCAAGCATGTTC 57.486 45.000 8.59 0.00 31.44 3.18
2225 2384 6.671190 TGTTAATTGAAGTGCACAATCTCAG 58.329 36.000 21.04 0.00 37.04 3.35
2382 2541 0.606401 ATTGGTCTCCGTTGTGCTGG 60.606 55.000 0.00 0.00 0.00 4.85
2408 2567 6.976934 ACTCCTGTGAACCAAATTAATTGT 57.023 33.333 0.39 0.00 37.32 2.71
2470 2634 4.156556 GTCAATGCTACAGAGAATGGCAAA 59.843 41.667 0.00 0.00 36.49 3.68
2811 2998 2.104967 CAAATGCACCCACATGGATCT 58.895 47.619 0.00 0.00 37.39 2.75
2880 3068 1.608590 CTGCACACGGGTTCAGAAATT 59.391 47.619 12.45 0.00 40.20 1.82
2926 3118 3.005554 ACAGCATCTTTCAGGTCATTCG 58.994 45.455 0.00 0.00 0.00 3.34
2948 3140 4.965200 GAGAGCCCACTCCATAAGTAAT 57.035 45.455 0.00 0.00 44.65 1.89
2949 3141 4.888917 GAGAGCCCACTCCATAAGTAATC 58.111 47.826 0.00 0.00 44.65 1.75
2950 3142 4.298626 AGAGCCCACTCCATAAGTAATCA 58.701 43.478 0.00 0.00 44.65 2.57
2951 3143 4.721776 AGAGCCCACTCCATAAGTAATCAA 59.278 41.667 0.00 0.00 44.65 2.57
2952 3144 4.781934 AGCCCACTCCATAAGTAATCAAC 58.218 43.478 0.00 0.00 36.07 3.18
2992 3190 5.634118 TGGAACAGTGAGGATTTGAAGAAT 58.366 37.500 0.00 0.00 0.00 2.40
2993 3191 6.070656 TGGAACAGTGAGGATTTGAAGAATT 58.929 36.000 0.00 0.00 0.00 2.17
3194 3392 1.742510 GGCCTAAACGGTAAGCGCA 60.743 57.895 11.47 0.00 34.25 6.09
3202 3400 2.740714 CGGTAAGCGCACTTCTGCC 61.741 63.158 11.47 0.09 40.73 4.85
3213 3411 0.036732 ACTTCTGCCTGCATTTCGGA 59.963 50.000 0.00 0.00 0.00 4.55
3222 3420 2.228103 CCTGCATTTCGGATGGATCATG 59.772 50.000 0.00 0.00 0.00 3.07
3224 3422 3.553904 TGCATTTCGGATGGATCATGAA 58.446 40.909 0.00 0.00 0.00 2.57
3282 3492 3.413846 AGCTAACGCCATCATCATCAT 57.586 42.857 0.00 0.00 36.60 2.45
3283 3493 3.332919 AGCTAACGCCATCATCATCATC 58.667 45.455 0.00 0.00 36.60 2.92
3284 3494 3.069289 GCTAACGCCATCATCATCATCA 58.931 45.455 0.00 0.00 0.00 3.07
3286 3496 2.625695 ACGCCATCATCATCATCACA 57.374 45.000 0.00 0.00 0.00 3.58
3287 3497 3.136009 ACGCCATCATCATCATCACAT 57.864 42.857 0.00 0.00 0.00 3.21
3288 3498 3.483421 ACGCCATCATCATCATCACATT 58.517 40.909 0.00 0.00 0.00 2.71
3399 3609 1.202417 CGCTGACATGGGAGATACGTT 60.202 52.381 0.00 0.00 0.00 3.99
3401 3611 2.609459 GCTGACATGGGAGATACGTTTG 59.391 50.000 0.00 0.00 0.00 2.93
3453 3663 4.094590 TCGTTTCCGTTTCTGTTTAAAGCA 59.905 37.500 0.00 0.00 35.01 3.91
3454 3664 4.794246 CGTTTCCGTTTCTGTTTAAAGCAA 59.206 37.500 0.00 0.00 0.00 3.91
3460 3670 5.215160 CGTTTCTGTTTAAAGCAAGCTCAT 58.785 37.500 0.00 0.00 0.00 2.90
3461 3671 5.340667 CGTTTCTGTTTAAAGCAAGCTCATC 59.659 40.000 0.00 0.00 0.00 2.92
3462 3672 6.208644 GTTTCTGTTTAAAGCAAGCTCATCA 58.791 36.000 0.00 0.00 0.00 3.07
3463 3673 5.362556 TCTGTTTAAAGCAAGCTCATCAC 57.637 39.130 0.00 0.00 0.00 3.06
3464 3674 4.821260 TCTGTTTAAAGCAAGCTCATCACA 59.179 37.500 0.00 0.00 0.00 3.58
3465 3675 4.858935 TGTTTAAAGCAAGCTCATCACAC 58.141 39.130 0.00 0.00 0.00 3.82
3466 3676 4.580167 TGTTTAAAGCAAGCTCATCACACT 59.420 37.500 0.00 0.00 0.00 3.55
3467 3677 5.149977 GTTTAAAGCAAGCTCATCACACTC 58.850 41.667 0.00 0.00 0.00 3.51
3474 3684 4.730903 GCAAGCTCATCACACTCAATCATG 60.731 45.833 0.00 0.00 0.00 3.07
3488 3698 5.069119 ACTCAATCATGTGGCTTATCTCGTA 59.931 40.000 0.00 0.00 0.00 3.43
3526 3737 2.993899 GACACCACTGATTCTGTTACGG 59.006 50.000 0.00 0.00 0.00 4.02
3527 3738 1.732259 CACCACTGATTCTGTTACGGC 59.268 52.381 0.00 0.00 0.00 5.68
3538 3749 4.119442 TCTGTTACGGCCTTCTATTGTC 57.881 45.455 0.00 0.00 0.00 3.18
3540 3751 3.857052 TGTTACGGCCTTCTATTGTCAG 58.143 45.455 0.00 0.00 0.00 3.51
3541 3752 3.259876 TGTTACGGCCTTCTATTGTCAGT 59.740 43.478 0.00 0.00 0.00 3.41
3542 3753 4.251268 GTTACGGCCTTCTATTGTCAGTT 58.749 43.478 0.00 0.00 0.00 3.16
3543 3754 3.418684 ACGGCCTTCTATTGTCAGTTT 57.581 42.857 0.00 0.00 0.00 2.66
3544 3755 3.074412 ACGGCCTTCTATTGTCAGTTTG 58.926 45.455 0.00 0.00 0.00 2.93
3545 3756 3.074412 CGGCCTTCTATTGTCAGTTTGT 58.926 45.455 0.00 0.00 0.00 2.83
3546 3757 3.502211 CGGCCTTCTATTGTCAGTTTGTT 59.498 43.478 0.00 0.00 0.00 2.83
3547 3758 4.693566 CGGCCTTCTATTGTCAGTTTGTTA 59.306 41.667 0.00 0.00 0.00 2.41
3548 3759 5.390567 CGGCCTTCTATTGTCAGTTTGTTAC 60.391 44.000 0.00 0.00 0.00 2.50
3549 3760 5.106277 GGCCTTCTATTGTCAGTTTGTTACC 60.106 44.000 0.00 0.00 0.00 2.85
3550 3761 5.106277 GCCTTCTATTGTCAGTTTGTTACCC 60.106 44.000 0.00 0.00 0.00 3.69
3551 3762 6.001460 CCTTCTATTGTCAGTTTGTTACCCA 58.999 40.000 0.00 0.00 0.00 4.51
3552 3763 6.072673 CCTTCTATTGTCAGTTTGTTACCCAC 60.073 42.308 0.00 0.00 0.00 4.61
3553 3764 4.992319 TCTATTGTCAGTTTGTTACCCACG 59.008 41.667 0.00 0.00 0.00 4.94
3554 3765 1.301423 TGTCAGTTTGTTACCCACGC 58.699 50.000 0.00 0.00 0.00 5.34
3555 3766 1.301423 GTCAGTTTGTTACCCACGCA 58.699 50.000 0.00 0.00 0.00 5.24
3556 3767 1.003223 GTCAGTTTGTTACCCACGCAC 60.003 52.381 0.00 0.00 0.00 5.34
3557 3768 0.041663 CAGTTTGTTACCCACGCACG 60.042 55.000 0.00 0.00 0.00 5.34
3558 3769 1.161563 AGTTTGTTACCCACGCACGG 61.162 55.000 0.00 0.00 0.00 4.94
3566 3777 3.467226 CCACGCACGGGGTAGGAT 61.467 66.667 2.36 0.00 33.05 3.24
3567 3778 2.582436 CACGCACGGGGTAGGATT 59.418 61.111 0.00 0.00 0.00 3.01
3568 3779 1.678598 CCACGCACGGGGTAGGATTA 61.679 60.000 2.36 0.00 33.05 1.75
3569 3780 0.176219 CACGCACGGGGTAGGATTAA 59.824 55.000 0.00 0.00 0.00 1.40
3570 3781 0.903942 ACGCACGGGGTAGGATTAAA 59.096 50.000 0.00 0.00 0.00 1.52
3571 3782 1.487558 ACGCACGGGGTAGGATTAAAT 59.512 47.619 0.00 0.00 0.00 1.40
3572 3783 1.871039 CGCACGGGGTAGGATTAAATG 59.129 52.381 0.00 0.00 0.00 2.32
3573 3784 1.607148 GCACGGGGTAGGATTAAATGC 59.393 52.381 0.00 0.00 0.00 3.56
3574 3785 2.748465 GCACGGGGTAGGATTAAATGCT 60.748 50.000 0.00 0.00 34.41 3.79
3575 3786 2.878406 CACGGGGTAGGATTAAATGCTG 59.122 50.000 0.00 0.00 31.56 4.41
3576 3787 2.775384 ACGGGGTAGGATTAAATGCTGA 59.225 45.455 0.00 0.00 31.56 4.26
3577 3788 3.394606 ACGGGGTAGGATTAAATGCTGAT 59.605 43.478 0.00 0.00 31.56 2.90
3578 3789 3.753272 CGGGGTAGGATTAAATGCTGATG 59.247 47.826 0.00 0.00 31.56 3.07
3579 3790 3.507622 GGGGTAGGATTAAATGCTGATGC 59.492 47.826 0.00 0.00 40.20 3.91
3593 3804 3.842732 CTGATGCAGCTGATTTGTTCA 57.157 42.857 20.43 3.86 0.00 3.18
3594 3805 4.371855 CTGATGCAGCTGATTTGTTCAT 57.628 40.909 20.43 9.28 32.72 2.57
3595 3806 4.104696 TGATGCAGCTGATTTGTTCATG 57.895 40.909 20.43 0.00 32.72 3.07
3596 3807 3.119280 TGATGCAGCTGATTTGTTCATGG 60.119 43.478 20.43 0.00 32.72 3.66
3597 3808 1.546923 TGCAGCTGATTTGTTCATGGG 59.453 47.619 20.43 0.00 32.72 4.00
3598 3809 1.738030 GCAGCTGATTTGTTCATGGGC 60.738 52.381 20.43 0.00 32.72 5.36
3629 3840 3.000041 CAGTATTGCCTACTTGCACGAA 59.000 45.455 0.00 0.00 41.88 3.85
3802 4013 0.537653 TGCGTCGGGTTCAATCCATA 59.462 50.000 0.00 0.00 0.00 2.74
3831 4044 3.325293 ACTTGCATCACTCGATTCACT 57.675 42.857 0.00 0.00 0.00 3.41
3840 4053 6.454848 GCATCACTCGATTCACTACAGAAAAG 60.455 42.308 0.00 0.00 0.00 2.27
3843 4056 6.863645 TCACTCGATTCACTACAGAAAAGAAG 59.136 38.462 0.00 0.00 0.00 2.85
3847 4060 7.658261 TCGATTCACTACAGAAAAGAAGAAGA 58.342 34.615 0.00 0.00 0.00 2.87
3848 4061 8.307483 TCGATTCACTACAGAAAAGAAGAAGAT 58.693 33.333 0.00 0.00 0.00 2.40
3849 4062 8.930760 CGATTCACTACAGAAAAGAAGAAGATT 58.069 33.333 0.00 0.00 0.00 2.40
3910 4129 3.129502 CCGGAGTACGCCTCGACA 61.130 66.667 14.12 0.00 41.46 4.35
4440 4683 1.520342 GTGGAGATGAGGAGCGTGC 60.520 63.158 0.00 0.00 0.00 5.34
4441 4684 2.279120 GGAGATGAGGAGCGTGCG 60.279 66.667 0.00 0.00 0.00 5.34
4442 4685 2.492090 GAGATGAGGAGCGTGCGT 59.508 61.111 0.00 0.00 0.00 5.24
4443 4686 1.875813 GAGATGAGGAGCGTGCGTG 60.876 63.158 0.00 0.00 0.00 5.34
4444 4687 3.558411 GATGAGGAGCGTGCGTGC 61.558 66.667 0.00 0.00 0.00 5.34
4656 4899 6.777782 AGAGAGATCATTGGTCTTTGACTTT 58.222 36.000 0.00 0.00 32.47 2.66
4658 4901 5.709164 AGAGATCATTGGTCTTTGACTTTGG 59.291 40.000 0.00 0.00 32.47 3.28
4659 4902 5.634118 AGATCATTGGTCTTTGACTTTGGA 58.366 37.500 0.00 0.00 32.47 3.53
4660 4903 5.709164 AGATCATTGGTCTTTGACTTTGGAG 59.291 40.000 0.00 0.00 32.47 3.86
4661 4904 3.569701 TCATTGGTCTTTGACTTTGGAGC 59.430 43.478 0.00 0.00 32.47 4.70
4662 4905 3.297134 TTGGTCTTTGACTTTGGAGCT 57.703 42.857 0.00 0.00 32.47 4.09
4663 4906 2.575532 TGGTCTTTGACTTTGGAGCTG 58.424 47.619 0.00 0.00 32.47 4.24
4664 4907 2.172505 TGGTCTTTGACTTTGGAGCTGA 59.827 45.455 0.00 0.00 32.47 4.26
4665 4908 2.810852 GGTCTTTGACTTTGGAGCTGAG 59.189 50.000 0.00 0.00 32.47 3.35
4666 4909 3.471680 GTCTTTGACTTTGGAGCTGAGT 58.528 45.455 0.00 0.00 0.00 3.41
4667 4910 3.879892 GTCTTTGACTTTGGAGCTGAGTT 59.120 43.478 0.00 0.00 0.00 3.01
4668 4911 5.057149 GTCTTTGACTTTGGAGCTGAGTTA 58.943 41.667 0.00 0.00 0.00 2.24
4669 4912 5.178438 GTCTTTGACTTTGGAGCTGAGTTAG 59.822 44.000 0.00 0.00 0.00 2.34
4670 4913 4.955811 TTGACTTTGGAGCTGAGTTAGA 57.044 40.909 0.00 0.00 0.00 2.10
4671 4914 4.527509 TGACTTTGGAGCTGAGTTAGAG 57.472 45.455 0.00 0.00 0.00 2.43
4672 4915 3.258228 GACTTTGGAGCTGAGTTAGAGC 58.742 50.000 0.00 0.00 36.65 4.09
4673 4916 2.634940 ACTTTGGAGCTGAGTTAGAGCA 59.365 45.455 0.00 0.00 39.05 4.26
4674 4917 3.262915 ACTTTGGAGCTGAGTTAGAGCAT 59.737 43.478 0.00 0.00 39.05 3.79
4675 4918 3.533606 TTGGAGCTGAGTTAGAGCATC 57.466 47.619 0.00 0.00 39.05 3.91
4689 4932 2.748605 GAGCATCTACAATCAGACCCG 58.251 52.381 0.00 0.00 0.00 5.28
4690 4933 2.362397 GAGCATCTACAATCAGACCCGA 59.638 50.000 0.00 0.00 0.00 5.14
4691 4934 2.766263 AGCATCTACAATCAGACCCGAA 59.234 45.455 0.00 0.00 0.00 4.30
4692 4935 3.197766 AGCATCTACAATCAGACCCGAAA 59.802 43.478 0.00 0.00 0.00 3.46
4693 4936 4.130118 GCATCTACAATCAGACCCGAAAT 58.870 43.478 0.00 0.00 0.00 2.17
4694 4937 4.212214 GCATCTACAATCAGACCCGAAATC 59.788 45.833 0.00 0.00 0.00 2.17
4695 4938 4.402056 TCTACAATCAGACCCGAAATCC 57.598 45.455 0.00 0.00 0.00 3.01
4696 4939 4.030913 TCTACAATCAGACCCGAAATCCT 58.969 43.478 0.00 0.00 0.00 3.24
4697 4940 3.268023 ACAATCAGACCCGAAATCCTC 57.732 47.619 0.00 0.00 0.00 3.71
4698 4941 2.840651 ACAATCAGACCCGAAATCCTCT 59.159 45.455 0.00 0.00 0.00 3.69
4699 4942 3.264450 ACAATCAGACCCGAAATCCTCTT 59.736 43.478 0.00 0.00 0.00 2.85
4700 4943 4.263506 ACAATCAGACCCGAAATCCTCTTT 60.264 41.667 0.00 0.00 0.00 2.52
4701 4944 5.045869 ACAATCAGACCCGAAATCCTCTTTA 60.046 40.000 0.00 0.00 0.00 1.85
4702 4945 4.467198 TCAGACCCGAAATCCTCTTTAC 57.533 45.455 0.00 0.00 0.00 2.01
4703 4946 3.835978 TCAGACCCGAAATCCTCTTTACA 59.164 43.478 0.00 0.00 0.00 2.41
4704 4947 3.933332 CAGACCCGAAATCCTCTTTACAC 59.067 47.826 0.00 0.00 0.00 2.90
4705 4948 2.928116 GACCCGAAATCCTCTTTACACG 59.072 50.000 0.00 0.00 0.00 4.49
4706 4949 1.664151 CCCGAAATCCTCTTTACACGC 59.336 52.381 0.00 0.00 0.00 5.34
4707 4950 2.618053 CCGAAATCCTCTTTACACGCT 58.382 47.619 0.00 0.00 0.00 5.07
4708 4951 3.000727 CCGAAATCCTCTTTACACGCTT 58.999 45.455 0.00 0.00 0.00 4.68
4709 4952 3.435671 CCGAAATCCTCTTTACACGCTTT 59.564 43.478 0.00 0.00 0.00 3.51
4710 4953 4.394795 CGAAATCCTCTTTACACGCTTTG 58.605 43.478 0.00 0.00 0.00 2.77
4711 4954 4.084013 CGAAATCCTCTTTACACGCTTTGT 60.084 41.667 0.00 0.00 42.84 2.83
4728 4971 1.337384 TGTGCGGATGGCCTAGTCAT 61.337 55.000 3.32 0.00 42.61 3.06
4756 4999 0.397816 CACCCAACCAAACCCCTCAA 60.398 55.000 0.00 0.00 0.00 3.02
4757 5000 0.340208 ACCCAACCAAACCCCTCAAA 59.660 50.000 0.00 0.00 0.00 2.69
4774 5017 6.295859 CCCCTCAAATCGATTCTATATGTCCA 60.296 42.308 11.83 0.00 0.00 4.02
4781 5024 6.701145 TCGATTCTATATGTCCAGGCTATC 57.299 41.667 0.00 0.00 0.00 2.08
4783 5026 5.360999 CGATTCTATATGTCCAGGCTATCCA 59.639 44.000 0.00 0.00 33.74 3.41
4798 5041 1.920734 ATCCAGCACCCCATACGCAA 61.921 55.000 0.00 0.00 0.00 4.85
4802 5045 1.376683 GCACCCCATACGCAACTCA 60.377 57.895 0.00 0.00 0.00 3.41
4809 5052 3.994392 CCCCATACGCAACTCATATGTAC 59.006 47.826 1.90 0.00 0.00 2.90
4810 5053 3.994392 CCCATACGCAACTCATATGTACC 59.006 47.826 1.90 0.00 0.00 3.34
4811 5054 4.502431 CCCATACGCAACTCATATGTACCA 60.502 45.833 1.90 0.00 0.00 3.25
4813 5056 3.603158 ACGCAACTCATATGTACCACA 57.397 42.857 1.90 0.00 0.00 4.17
4820 5063 7.759433 CGCAACTCATATGTACCACATATATGA 59.241 37.037 19.63 10.67 46.79 2.15
4821 5064 9.435688 GCAACTCATATGTACCACATATATGAA 57.564 33.333 19.63 0.00 46.79 2.57
4830 5073 4.724399 ACCACATATATGAAAATGCCCGA 58.276 39.130 19.63 0.00 0.00 5.14
4831 5074 4.761739 ACCACATATATGAAAATGCCCGAG 59.238 41.667 19.63 0.00 0.00 4.63
4841 5084 4.758251 TGCCCGAGCACATCCGTG 62.758 66.667 0.00 0.00 46.52 4.94
4843 5086 2.501128 CCCGAGCACATCCGTGAT 59.499 61.111 0.00 0.00 46.60 3.06
4844 5087 1.884464 CCCGAGCACATCCGTGATG 60.884 63.158 11.04 11.04 43.18 3.07
4880 5123 0.537143 AGCCACGCCAAAACTCATCA 60.537 50.000 0.00 0.00 0.00 3.07
4895 5138 0.813184 CATCAACATGCGCCTCCTTT 59.187 50.000 4.18 0.00 0.00 3.11
4896 5139 0.813184 ATCAACATGCGCCTCCTTTG 59.187 50.000 4.18 1.23 0.00 2.77
4902 5145 1.750778 CATGCGCCTCCTTTGGTTTAT 59.249 47.619 4.18 0.00 0.00 1.40
4908 5151 3.421844 GCCTCCTTTGGTTTATGTGAGT 58.578 45.455 0.00 0.00 0.00 3.41
4911 5154 5.556915 CCTCCTTTGGTTTATGTGAGTACA 58.443 41.667 0.00 0.00 41.89 2.90
4930 5173 7.042119 TGAGTACACATTAACCAATATCGCATG 60.042 37.037 0.00 0.00 0.00 4.06
4951 5194 4.703897 TGGCCTGTAATATGAAGTGCTAC 58.296 43.478 3.32 0.00 0.00 3.58
4959 5202 8.978874 TGTAATATGAAGTGCTACCAAATGAT 57.021 30.769 0.00 0.00 0.00 2.45
4961 5204 6.791887 ATATGAAGTGCTACCAAATGATCG 57.208 37.500 0.00 0.00 0.00 3.69
4967 5210 1.599542 GCTACCAAATGATCGAGGCAC 59.400 52.381 0.00 0.00 0.00 5.01
5019 5273 6.544928 AACAAAAGATGTGGTCTCCTTTTT 57.455 33.333 0.00 0.00 42.99 1.94
5028 5282 4.340950 TGTGGTCTCCTTTTTCATTTCCAC 59.659 41.667 0.00 0.00 41.83 4.02
5033 5287 4.340950 TCTCCTTTTTCATTTCCACCACAC 59.659 41.667 0.00 0.00 0.00 3.82
5038 5292 6.646240 CCTTTTTCATTTCCACCACACTATTG 59.354 38.462 0.00 0.00 0.00 1.90
5045 5299 2.079158 CCACCACACTATTGCTCACTG 58.921 52.381 0.00 0.00 0.00 3.66
5077 5332 4.497473 TTATTTTTCTTCACAGGTGGCG 57.503 40.909 0.00 0.00 0.00 5.69
5131 5387 5.491982 TCTCCCTTGTTTCTTCATTAGCTC 58.508 41.667 0.00 0.00 0.00 4.09
5146 5402 6.824553 TCATTAGCTCTTCATGCTCATACTT 58.175 36.000 0.00 0.00 41.46 2.24
5155 5411 8.791327 TCTTCATGCTCATACTTTAATTGTGA 57.209 30.769 0.00 0.00 0.00 3.58
5165 5421 9.140286 TCATACTTTAATTGTGAGACTCTTTCG 57.860 33.333 3.68 0.00 0.00 3.46
5195 5452 4.685628 GGTAATTGTTGCATTGGTTCACAG 59.314 41.667 0.00 0.00 0.00 3.66
5200 5457 3.243468 TGTTGCATTGGTTCACAGTCATG 60.243 43.478 0.00 0.00 0.00 3.07
5205 5462 4.499526 GCATTGGTTCACAGTCATGTTCAA 60.500 41.667 0.00 0.00 37.65 2.69
5209 5466 3.820467 GGTTCACAGTCATGTTCAATGGA 59.180 43.478 0.00 0.00 37.65 3.41
5215 5472 5.182570 CACAGTCATGTTCAATGGATGTCTT 59.817 40.000 0.00 0.00 37.65 3.01
5216 5473 6.372381 CACAGTCATGTTCAATGGATGTCTTA 59.628 38.462 0.00 0.00 37.65 2.10
5219 5476 8.464404 CAGTCATGTTCAATGGATGTCTTAAAT 58.536 33.333 0.00 0.00 0.00 1.40
5237 5495 3.981071 AATGATTCCACCTCGAAGTCA 57.019 42.857 0.00 0.00 0.00 3.41
5246 5504 1.524863 CCTCGAAGTCACCACGACCT 61.525 60.000 0.00 0.00 46.69 3.85
5265 5523 1.410882 CTCTTCCTCGGGGTCTTCATC 59.589 57.143 0.00 0.00 0.00 2.92
5274 5532 4.543689 TCGGGGTCTTCATCAGTATAACT 58.456 43.478 0.00 0.00 0.00 2.24
5281 5539 7.283329 GGTCTTCATCAGTATAACTTTCCCAT 58.717 38.462 0.00 0.00 0.00 4.00
5291 5549 9.231297 CAGTATAACTTTCCCATCTTTCTTTCA 57.769 33.333 0.00 0.00 0.00 2.69
5296 5554 7.459795 ACTTTCCCATCTTTCTTTCAGAATC 57.540 36.000 0.00 0.00 33.67 2.52
5305 5563 7.992180 TCTTTCTTTCAGAATCTGCAAAAAC 57.008 32.000 5.18 0.00 33.67 2.43
5314 5572 5.575606 CAGAATCTGCAAAAACCTTAGCATG 59.424 40.000 0.00 0.00 36.28 4.06
5328 5586 0.884704 AGCATGCCGTTTGACGACTT 60.885 50.000 15.66 0.00 46.05 3.01
5339 5597 2.588027 TGACGACTTGTAGCACAACA 57.412 45.000 0.00 0.00 33.96 3.33
5341 5599 3.462982 TGACGACTTGTAGCACAACATT 58.537 40.909 0.00 0.00 33.96 2.71
5352 5610 6.237901 TGTAGCACAACATTAAGGTCAAGAT 58.762 36.000 0.00 0.00 0.00 2.40
5354 5612 8.046708 TGTAGCACAACATTAAGGTCAAGATAT 58.953 33.333 0.00 0.00 0.00 1.63
5384 5642 2.095213 GCTCAATTTATCGGAACACGCA 59.905 45.455 0.00 0.00 43.86 5.24
5385 5643 3.425625 GCTCAATTTATCGGAACACGCAA 60.426 43.478 0.00 0.00 43.86 4.85
5412 5670 2.768527 TCTTGGTCTAGGCAAGATGGAG 59.231 50.000 0.00 0.00 36.36 3.86
5423 5681 5.583932 AGGCAAGATGGAGAAGGTTTAAAT 58.416 37.500 0.00 0.00 0.00 1.40
5424 5682 6.019108 AGGCAAGATGGAGAAGGTTTAAATT 58.981 36.000 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.054671 CGATCAAAAGATCCTACTGCTCC 58.945 47.826 0.00 0.00 0.00 4.70
1 2 4.742659 GTCGATCAAAAGATCCTACTGCTC 59.257 45.833 0.00 0.00 0.00 4.26
2 3 4.404073 AGTCGATCAAAAGATCCTACTGCT 59.596 41.667 0.00 0.00 0.00 4.24
3 4 4.688021 AGTCGATCAAAAGATCCTACTGC 58.312 43.478 0.00 0.00 0.00 4.40
4 5 5.521735 CCAAGTCGATCAAAAGATCCTACTG 59.478 44.000 8.17 4.76 29.93 2.74
5 6 5.395768 CCCAAGTCGATCAAAAGATCCTACT 60.396 44.000 0.00 0.00 0.00 2.57
6 7 4.811557 CCCAAGTCGATCAAAAGATCCTAC 59.188 45.833 0.00 0.00 0.00 3.18
7 8 4.141711 CCCCAAGTCGATCAAAAGATCCTA 60.142 45.833 0.00 0.00 0.00 2.94
8 9 3.370953 CCCCAAGTCGATCAAAAGATCCT 60.371 47.826 0.00 0.00 0.00 3.24
9 10 2.945668 CCCCAAGTCGATCAAAAGATCC 59.054 50.000 0.00 0.00 0.00 3.36
10 11 2.945668 CCCCCAAGTCGATCAAAAGATC 59.054 50.000 0.00 0.00 0.00 2.75
11 12 2.308866 ACCCCCAAGTCGATCAAAAGAT 59.691 45.455 0.00 0.00 0.00 2.40
12 13 1.702957 ACCCCCAAGTCGATCAAAAGA 59.297 47.619 0.00 0.00 0.00 2.52
13 14 1.812571 CACCCCCAAGTCGATCAAAAG 59.187 52.381 0.00 0.00 0.00 2.27
14 15 1.422024 TCACCCCCAAGTCGATCAAAA 59.578 47.619 0.00 0.00 0.00 2.44
15 16 1.003118 CTCACCCCCAAGTCGATCAAA 59.997 52.381 0.00 0.00 0.00 2.69
16 17 0.613260 CTCACCCCCAAGTCGATCAA 59.387 55.000 0.00 0.00 0.00 2.57
17 18 0.544357 ACTCACCCCCAAGTCGATCA 60.544 55.000 0.00 0.00 0.00 2.92
18 19 1.481871 TACTCACCCCCAAGTCGATC 58.518 55.000 0.00 0.00 0.00 3.69
19 20 1.553704 GTTACTCACCCCCAAGTCGAT 59.446 52.381 0.00 0.00 0.00 3.59
20 21 0.971386 GTTACTCACCCCCAAGTCGA 59.029 55.000 0.00 0.00 0.00 4.20
21 22 0.682852 TGTTACTCACCCCCAAGTCG 59.317 55.000 0.00 0.00 0.00 4.18
22 23 1.697982 ACTGTTACTCACCCCCAAGTC 59.302 52.381 0.00 0.00 0.00 3.01
23 24 1.815757 ACTGTTACTCACCCCCAAGT 58.184 50.000 0.00 0.00 0.00 3.16
24 25 3.071892 TGTTACTGTTACTCACCCCCAAG 59.928 47.826 0.00 0.00 0.00 3.61
25 26 3.047115 TGTTACTGTTACTCACCCCCAA 58.953 45.455 0.00 0.00 0.00 4.12
26 27 2.635915 CTGTTACTGTTACTCACCCCCA 59.364 50.000 0.00 0.00 0.00 4.96
27 28 2.636403 ACTGTTACTGTTACTCACCCCC 59.364 50.000 0.00 0.00 0.00 5.40
28 29 5.221501 TGTTACTGTTACTGTTACTCACCCC 60.222 44.000 11.48 0.00 0.00 4.95
29 30 5.846203 TGTTACTGTTACTGTTACTCACCC 58.154 41.667 11.48 0.00 0.00 4.61
30 31 5.924825 CCTGTTACTGTTACTGTTACTCACC 59.075 44.000 11.48 0.00 0.00 4.02
31 32 5.924825 CCCTGTTACTGTTACTGTTACTCAC 59.075 44.000 11.48 0.00 0.00 3.51
32 33 5.510179 GCCCTGTTACTGTTACTGTTACTCA 60.510 44.000 11.48 2.43 0.00 3.41
33 34 4.928020 GCCCTGTTACTGTTACTGTTACTC 59.072 45.833 11.48 0.00 0.00 2.59
34 35 4.591924 AGCCCTGTTACTGTTACTGTTACT 59.408 41.667 11.48 0.00 0.00 2.24
35 36 4.891260 AGCCCTGTTACTGTTACTGTTAC 58.109 43.478 0.00 2.55 0.00 2.50
36 37 5.539574 TGTAGCCCTGTTACTGTTACTGTTA 59.460 40.000 0.00 0.00 0.00 2.41
37 38 4.345837 TGTAGCCCTGTTACTGTTACTGTT 59.654 41.667 0.00 0.00 0.00 3.16
38 39 3.899360 TGTAGCCCTGTTACTGTTACTGT 59.101 43.478 0.00 0.00 0.00 3.55
39 40 4.530710 TGTAGCCCTGTTACTGTTACTG 57.469 45.455 0.00 0.00 0.00 2.74
40 41 4.081087 CCATGTAGCCCTGTTACTGTTACT 60.081 45.833 0.00 0.00 0.00 2.24
41 42 4.189231 CCATGTAGCCCTGTTACTGTTAC 58.811 47.826 0.00 0.00 0.00 2.50
42 43 3.199071 CCCATGTAGCCCTGTTACTGTTA 59.801 47.826 0.00 0.00 0.00 2.41
43 44 2.026262 CCCATGTAGCCCTGTTACTGTT 60.026 50.000 0.00 0.00 0.00 3.16
44 45 1.559682 CCCATGTAGCCCTGTTACTGT 59.440 52.381 0.00 0.00 0.00 3.55
45 46 1.747206 GCCCATGTAGCCCTGTTACTG 60.747 57.143 0.00 0.00 0.00 2.74
46 47 0.546598 GCCCATGTAGCCCTGTTACT 59.453 55.000 0.00 0.00 0.00 2.24
47 48 0.546598 AGCCCATGTAGCCCTGTTAC 59.453 55.000 1.56 0.00 0.00 2.50
48 49 0.546122 CAGCCCATGTAGCCCTGTTA 59.454 55.000 1.56 0.00 0.00 2.41
49 50 1.304282 CAGCCCATGTAGCCCTGTT 59.696 57.895 1.56 0.00 0.00 3.16
50 51 1.925455 ACAGCCCATGTAGCCCTGT 60.925 57.895 1.56 0.00 41.60 4.00
51 52 1.452651 CACAGCCCATGTAGCCCTG 60.453 63.158 1.56 0.00 41.41 4.45
52 53 1.616327 TCACAGCCCATGTAGCCCT 60.616 57.895 1.56 0.00 41.41 5.19
53 54 1.452108 GTCACAGCCCATGTAGCCC 60.452 63.158 1.56 0.00 41.41 5.19
54 55 0.745845 CAGTCACAGCCCATGTAGCC 60.746 60.000 1.56 0.00 41.41 3.93
55 56 0.036010 ACAGTCACAGCCCATGTAGC 60.036 55.000 0.00 0.00 41.41 3.58
56 57 1.276138 TCACAGTCACAGCCCATGTAG 59.724 52.381 0.00 0.00 41.41 2.74
57 58 1.276138 CTCACAGTCACAGCCCATGTA 59.724 52.381 0.00 0.00 41.41 2.29
58 59 0.035881 CTCACAGTCACAGCCCATGT 59.964 55.000 0.00 0.00 45.43 3.21
59 60 0.035881 ACTCACAGTCACAGCCCATG 59.964 55.000 0.00 0.00 0.00 3.66
60 61 0.035881 CACTCACAGTCACAGCCCAT 59.964 55.000 0.00 0.00 0.00 4.00
61 62 1.048160 TCACTCACAGTCACAGCCCA 61.048 55.000 0.00 0.00 0.00 5.36
62 63 0.320247 CTCACTCACAGTCACAGCCC 60.320 60.000 0.00 0.00 0.00 5.19
63 64 0.948141 GCTCACTCACAGTCACAGCC 60.948 60.000 0.00 0.00 0.00 4.85
64 65 0.948141 GGCTCACTCACAGTCACAGC 60.948 60.000 0.00 0.00 0.00 4.40
65 66 0.320247 GGGCTCACTCACAGTCACAG 60.320 60.000 0.00 0.00 0.00 3.66
66 67 1.748403 GGGCTCACTCACAGTCACA 59.252 57.895 0.00 0.00 0.00 3.58
67 68 1.373497 CGGGCTCACTCACAGTCAC 60.373 63.158 0.00 0.00 0.00 3.67
68 69 1.832608 ACGGGCTCACTCACAGTCA 60.833 57.895 0.00 0.00 0.00 3.41
69 70 1.373497 CACGGGCTCACTCACAGTC 60.373 63.158 0.00 0.00 0.00 3.51
70 71 1.832608 TCACGGGCTCACTCACAGT 60.833 57.895 0.00 0.00 0.00 3.55
71 72 1.373497 GTCACGGGCTCACTCACAG 60.373 63.158 0.00 0.00 0.00 3.66
72 73 2.734591 GTCACGGGCTCACTCACA 59.265 61.111 0.00 0.00 0.00 3.58
73 74 2.430921 CGTCACGGGCTCACTCAC 60.431 66.667 0.00 0.00 0.00 3.51
74 75 4.357947 GCGTCACGGGCTCACTCA 62.358 66.667 0.00 0.00 0.00 3.41
111 112 2.357517 CACGGGCTTCAACTCGCT 60.358 61.111 0.00 0.00 0.00 4.93
117 118 1.896660 GAGGCAACACGGGCTTCAA 60.897 57.895 0.00 0.00 44.62 2.69
119 120 1.600916 AAGAGGCAACACGGGCTTC 60.601 57.895 0.00 0.00 44.62 3.86
141 142 1.358787 TGATTTCAGCCCTCCATTGGT 59.641 47.619 1.86 0.00 0.00 3.67
142 143 2.029623 CTGATTTCAGCCCTCCATTGG 58.970 52.381 0.00 0.00 37.15 3.16
192 200 2.071540 CCGCTCGTATTCATCATGCAT 58.928 47.619 0.00 0.00 0.00 3.96
248 256 9.425577 GGCTATTTATAGATGTACAGAAACTCC 57.574 37.037 0.33 0.00 32.05 3.85
536 548 1.908619 TGGGCAAGTCAATCTAGAGCA 59.091 47.619 0.00 0.00 0.00 4.26
575 591 2.670592 TGCTGCAATGCGACTGCT 60.671 55.556 0.00 0.00 43.34 4.24
639 655 1.073964 CCAGATGTGTGAAGTGAGCG 58.926 55.000 0.00 0.00 0.00 5.03
654 670 4.592942 AGAGCACATTTTAGATTGCCAGA 58.407 39.130 0.00 0.00 35.47 3.86
686 704 2.026729 TCAACCATCTAACCCAATGCGA 60.027 45.455 0.00 0.00 0.00 5.10
754 775 1.520342 GCTTTCTCTCGCGGCTCAT 60.520 57.895 6.13 0.00 0.00 2.90
755 776 2.125912 GCTTTCTCTCGCGGCTCA 60.126 61.111 6.13 0.00 0.00 4.26
756 777 1.691215 CTTGCTTTCTCTCGCGGCTC 61.691 60.000 6.13 0.00 0.00 4.70
757 778 1.739562 CTTGCTTTCTCTCGCGGCT 60.740 57.895 6.13 0.00 0.00 5.52
758 779 2.781300 CTTGCTTTCTCTCGCGGC 59.219 61.111 6.13 0.00 0.00 6.53
759 780 1.568612 TTGCTTGCTTTCTCTCGCGG 61.569 55.000 6.13 0.00 0.00 6.46
760 781 0.235665 TTTGCTTGCTTTCTCTCGCG 59.764 50.000 0.00 0.00 0.00 5.87
761 782 1.002468 TGTTTGCTTGCTTTCTCTCGC 60.002 47.619 0.00 0.00 0.00 5.03
762 783 3.338818 TTGTTTGCTTGCTTTCTCTCG 57.661 42.857 0.00 0.00 0.00 4.04
763 784 5.348451 TGTTTTTGTTTGCTTGCTTTCTCTC 59.652 36.000 0.00 0.00 0.00 3.20
764 785 5.237048 TGTTTTTGTTTGCTTGCTTTCTCT 58.763 33.333 0.00 0.00 0.00 3.10
765 786 5.529014 TGTTTTTGTTTGCTTGCTTTCTC 57.471 34.783 0.00 0.00 0.00 2.87
766 787 5.938438 TTGTTTTTGTTTGCTTGCTTTCT 57.062 30.435 0.00 0.00 0.00 2.52
898 924 2.454941 GTTGGAGGGAGGGAGGGA 59.545 66.667 0.00 0.00 0.00 4.20
899 925 2.124996 TGTTGGAGGGAGGGAGGG 59.875 66.667 0.00 0.00 0.00 4.30
909 935 0.036306 GGGTGGTGGTAGTGTTGGAG 59.964 60.000 0.00 0.00 0.00 3.86
910 936 0.400815 AGGGTGGTGGTAGTGTTGGA 60.401 55.000 0.00 0.00 0.00 3.53
914 942 1.125711 GTGGAGGGTGGTGGTAGTGT 61.126 60.000 0.00 0.00 0.00 3.55
918 946 0.612732 CGTAGTGGAGGGTGGTGGTA 60.613 60.000 0.00 0.00 0.00 3.25
1045 1074 2.514824 GATGAAGGACCTGCCGCC 60.515 66.667 0.00 0.00 43.43 6.13
1278 1322 4.500116 GCCACGTCGGAGGAGCTC 62.500 72.222 4.71 4.71 36.56 4.09
1346 1390 1.456518 CCTCCGCTGATCCTCTCCA 60.457 63.158 0.00 0.00 0.00 3.86
1553 1597 0.396811 AACAGTGACGGGGAGAAAGG 59.603 55.000 0.00 0.00 0.00 3.11
1573 1617 3.605634 AGCACTGCAATTCAATACGGTA 58.394 40.909 3.30 0.00 0.00 4.02
1579 1623 4.595762 AAACAGAGCACTGCAATTCAAT 57.404 36.364 11.37 0.00 46.95 2.57
1592 1636 3.429207 GGACGAAACAGAGTAAACAGAGC 59.571 47.826 0.00 0.00 0.00 4.09
1607 1653 4.925054 CGTTTCTACCATGTTAGGACGAAA 59.075 41.667 16.34 1.38 32.39 3.46
1670 1719 8.183536 AGTTAACTTTCGTTTTGATACCGTTTT 58.816 29.630 1.12 0.00 34.59 2.43
1678 1727 8.504005 CATCCTGTAGTTAACTTTCGTTTTGAT 58.496 33.333 14.49 3.44 34.59 2.57
1704 1753 3.059352 ACTACAAGGGAACAGACATGC 57.941 47.619 0.00 0.00 0.00 4.06
1723 1772 2.349627 CGAGCTACCGCACAGATACTAC 60.350 54.545 0.00 0.00 39.10 2.73
1749 1806 5.660460 CTTTAACCCATTCAGCCATTTACC 58.340 41.667 0.00 0.00 0.00 2.85
1757 1814 2.029110 TGCAAGCTTTAACCCATTCAGC 60.029 45.455 0.00 0.00 0.00 4.26
1758 1815 3.256631 ACTGCAAGCTTTAACCCATTCAG 59.743 43.478 0.00 0.00 37.60 3.02
1839 1896 3.385193 ACCAAACACTTGCATTTAGCC 57.615 42.857 0.00 0.00 44.83 3.93
1840 1897 7.812669 ACTAATTACCAAACACTTGCATTTAGC 59.187 33.333 0.00 0.00 45.96 3.09
1930 1987 6.238648 CCCTTTTGATATGACCAGGTATACC 58.761 44.000 14.54 14.54 0.00 2.73
1931 1988 5.705905 GCCCTTTTGATATGACCAGGTATAC 59.294 44.000 0.00 0.00 0.00 1.47
1932 1989 5.371176 TGCCCTTTTGATATGACCAGGTATA 59.629 40.000 0.00 0.00 0.00 1.47
1933 1990 4.167892 TGCCCTTTTGATATGACCAGGTAT 59.832 41.667 0.00 0.00 0.00 2.73
2014 2079 0.598065 ACGATGTGGAAGCAAAAGCC 59.402 50.000 0.00 0.00 0.00 4.35
2042 2107 2.290577 GGAGACCAAGCCAGAATTGAGT 60.291 50.000 0.00 0.00 0.00 3.41
2098 2163 4.012374 AGCTACAACTAGTACCGCACTTA 58.988 43.478 0.00 0.00 38.80 2.24
2142 2207 3.915437 AAGGTTAAAATGACGGCACTG 57.085 42.857 0.00 0.00 0.00 3.66
2144 2209 3.972403 ACAAAGGTTAAAATGACGGCAC 58.028 40.909 0.00 0.00 0.00 5.01
2198 2357 7.648908 TGAGATTGTGCACTTCAATTAACAAAG 59.351 33.333 19.41 0.00 35.94 2.77
2225 2384 7.111593 CGGCATAAACGATAATCTTAACAAAGC 59.888 37.037 0.00 0.00 0.00 3.51
2382 2541 8.739972 ACAATTAATTTGGTTCACAGGAGTATC 58.260 33.333 0.00 0.00 39.80 2.24
2408 2567 5.296780 GTGCTGTATAACTAGTACACGGGTA 59.703 44.000 0.00 0.00 31.07 3.69
2484 2652 1.798283 TCATGTGTAACCGGGAAACG 58.202 50.000 6.32 0.00 43.80 3.60
2551 2721 2.389962 TGGACAAATACTACGTGCCC 57.610 50.000 0.00 0.00 0.00 5.36
2811 2998 3.044235 ACGCATGTGTTGATCTTCAGA 57.956 42.857 5.96 0.00 0.00 3.27
2821 3008 1.915614 GCTGCTGCTACGCATGTGTT 61.916 55.000 18.51 1.86 39.52 3.32
2880 3068 6.361433 TGGAACCTCAACAGAAAACATTCTA 58.639 36.000 0.00 0.00 0.00 2.10
2950 3142 8.868522 TGTTCCATTTCAAATCATCTAGAGTT 57.131 30.769 0.00 0.00 34.31 3.01
2951 3143 8.105829 ACTGTTCCATTTCAAATCATCTAGAGT 58.894 33.333 0.00 0.00 0.00 3.24
2952 3144 8.396390 CACTGTTCCATTTCAAATCATCTAGAG 58.604 37.037 0.00 0.00 0.00 2.43
2993 3191 5.447683 GCATCTCTGATCGTATGTGCAAAAA 60.448 40.000 0.00 0.00 0.00 1.94
3005 3203 5.313520 AGATCATACTGCATCTCTGATCG 57.686 43.478 16.48 0.00 44.33 3.69
3044 3242 6.669125 AACCAATCCAACATTCAGATCAAA 57.331 33.333 0.00 0.00 0.00 2.69
3162 3360 1.261938 TAGGCCCTTCTGCGCAGTAA 61.262 55.000 34.70 24.86 0.00 2.24
3194 3392 0.036732 TCCGAAATGCAGGCAGAAGT 59.963 50.000 0.00 0.00 0.00 3.01
3202 3400 3.143728 TCATGATCCATCCGAAATGCAG 58.856 45.455 0.00 0.00 0.00 4.41
3213 3411 4.863548 TGCCTTTCTTCTTCATGATCCAT 58.136 39.130 0.00 0.00 0.00 3.41
3222 3420 1.468127 GCTCAGCTGCCTTTCTTCTTC 59.532 52.381 9.47 0.00 0.00 2.87
3224 3422 0.691904 AGCTCAGCTGCCTTTCTTCT 59.308 50.000 9.47 0.00 37.57 2.85
3252 3451 3.776656 CGTTAGCTACCACACGCC 58.223 61.111 2.98 0.00 0.00 5.68
3284 3494 2.423185 CCTGTGAACACACACACAATGT 59.577 45.455 3.39 0.00 44.29 2.71
3286 3496 2.997980 TCCTGTGAACACACACACAAT 58.002 42.857 3.39 0.00 44.29 2.71
3287 3497 2.481289 TCCTGTGAACACACACACAA 57.519 45.000 3.39 0.00 44.29 3.33
3288 3498 2.287769 CATCCTGTGAACACACACACA 58.712 47.619 3.39 0.00 44.29 3.72
3395 3605 0.999406 CGATGGCGATCTTCAAACGT 59.001 50.000 7.15 0.00 40.82 3.99
3399 3609 0.179084 GTCCCGATGGCGATCTTCAA 60.179 55.000 7.15 0.00 40.82 2.69
3401 3611 0.598680 CTGTCCCGATGGCGATCTTC 60.599 60.000 7.15 0.00 40.82 2.87
3453 3663 4.395231 CACATGATTGAGTGTGATGAGCTT 59.605 41.667 0.00 0.00 46.58 3.74
3454 3664 3.939592 CACATGATTGAGTGTGATGAGCT 59.060 43.478 0.00 0.00 46.58 4.09
3460 3670 2.865119 AGCCACATGATTGAGTGTGA 57.135 45.000 0.00 0.00 46.58 3.58
3461 3671 4.880120 AGATAAGCCACATGATTGAGTGTG 59.120 41.667 0.00 0.00 44.02 3.82
3462 3672 5.108187 AGATAAGCCACATGATTGAGTGT 57.892 39.130 0.00 0.00 33.99 3.55
3463 3673 4.210746 CGAGATAAGCCACATGATTGAGTG 59.789 45.833 0.00 0.00 35.56 3.51
3464 3674 4.141846 ACGAGATAAGCCACATGATTGAGT 60.142 41.667 0.00 0.00 0.00 3.41
3465 3675 4.375272 ACGAGATAAGCCACATGATTGAG 58.625 43.478 0.00 0.00 0.00 3.02
3466 3676 4.406648 ACGAGATAAGCCACATGATTGA 57.593 40.909 0.00 0.00 0.00 2.57
3467 3677 4.151335 GCTACGAGATAAGCCACATGATTG 59.849 45.833 0.00 0.00 32.40 2.67
3474 3684 2.579207 TGTGCTACGAGATAAGCCAC 57.421 50.000 0.00 0.00 37.97 5.01
3526 3737 5.106277 GGGTAACAAACTGACAATAGAAGGC 60.106 44.000 0.00 0.00 39.74 4.35
3527 3738 6.001460 TGGGTAACAAACTGACAATAGAAGG 58.999 40.000 0.00 0.00 39.74 3.46
3538 3749 0.041663 CGTGCGTGGGTAACAAACTG 60.042 55.000 0.00 0.00 39.74 3.16
3540 3751 1.280444 CCGTGCGTGGGTAACAAAC 59.720 57.895 0.00 0.00 39.74 2.93
3541 3752 1.892862 CCCGTGCGTGGGTAACAAA 60.893 57.895 4.91 0.00 44.76 2.83
3542 3753 2.280933 CCCGTGCGTGGGTAACAA 60.281 61.111 4.91 0.00 44.76 2.83
3549 3760 1.678598 TAATCCTACCCCGTGCGTGG 61.679 60.000 0.00 0.00 0.00 4.94
3550 3761 0.176219 TTAATCCTACCCCGTGCGTG 59.824 55.000 0.00 0.00 0.00 5.34
3551 3762 0.903942 TTTAATCCTACCCCGTGCGT 59.096 50.000 0.00 0.00 0.00 5.24
3552 3763 1.871039 CATTTAATCCTACCCCGTGCG 59.129 52.381 0.00 0.00 0.00 5.34
3553 3764 1.607148 GCATTTAATCCTACCCCGTGC 59.393 52.381 0.00 0.00 0.00 5.34
3554 3765 2.878406 CAGCATTTAATCCTACCCCGTG 59.122 50.000 0.00 0.00 0.00 4.94
3555 3766 2.775384 TCAGCATTTAATCCTACCCCGT 59.225 45.455 0.00 0.00 0.00 5.28
3556 3767 3.485463 TCAGCATTTAATCCTACCCCG 57.515 47.619 0.00 0.00 0.00 5.73
3557 3768 3.507622 GCATCAGCATTTAATCCTACCCC 59.492 47.826 0.00 0.00 41.58 4.95
3558 3769 4.773323 GCATCAGCATTTAATCCTACCC 57.227 45.455 0.00 0.00 41.58 3.69
3573 3784 3.842732 TGAACAAATCAGCTGCATCAG 57.157 42.857 9.47 0.00 33.04 2.90
3574 3785 3.119280 CCATGAACAAATCAGCTGCATCA 60.119 43.478 9.47 7.07 42.53 3.07
3575 3786 3.444916 CCATGAACAAATCAGCTGCATC 58.555 45.455 9.47 1.34 42.53 3.91
3576 3787 2.167693 CCCATGAACAAATCAGCTGCAT 59.832 45.455 9.47 1.55 42.53 3.96
3577 3788 1.546923 CCCATGAACAAATCAGCTGCA 59.453 47.619 9.47 0.00 42.53 4.41
3578 3789 1.738030 GCCCATGAACAAATCAGCTGC 60.738 52.381 9.47 0.00 42.53 5.25
3579 3790 1.546923 TGCCCATGAACAAATCAGCTG 59.453 47.619 7.63 7.63 42.53 4.24
3580 3791 1.927487 TGCCCATGAACAAATCAGCT 58.073 45.000 0.00 0.00 42.53 4.24
3581 3792 2.973694 ATGCCCATGAACAAATCAGC 57.026 45.000 0.00 0.00 42.53 4.26
3582 3793 4.998672 ACAAAATGCCCATGAACAAATCAG 59.001 37.500 0.00 0.00 42.53 2.90
3583 3794 4.970711 ACAAAATGCCCATGAACAAATCA 58.029 34.783 0.00 0.00 43.67 2.57
3584 3795 5.691815 CAACAAAATGCCCATGAACAAATC 58.308 37.500 0.00 0.00 0.00 2.17
3585 3796 4.023021 GCAACAAAATGCCCATGAACAAAT 60.023 37.500 0.00 0.00 40.49 2.32
3586 3797 3.314635 GCAACAAAATGCCCATGAACAAA 59.685 39.130 0.00 0.00 40.49 2.83
3587 3798 2.877168 GCAACAAAATGCCCATGAACAA 59.123 40.909 0.00 0.00 40.49 2.83
3588 3799 2.158856 TGCAACAAAATGCCCATGAACA 60.159 40.909 0.00 0.00 45.83 3.18
3589 3800 2.481185 CTGCAACAAAATGCCCATGAAC 59.519 45.455 0.00 0.00 45.83 3.18
3590 3801 2.104451 ACTGCAACAAAATGCCCATGAA 59.896 40.909 0.00 0.00 45.83 2.57
3591 3802 1.693062 ACTGCAACAAAATGCCCATGA 59.307 42.857 0.00 0.00 45.83 3.07
3592 3803 2.172851 ACTGCAACAAAATGCCCATG 57.827 45.000 0.00 0.00 45.83 3.66
3593 3804 4.255301 CAATACTGCAACAAAATGCCCAT 58.745 39.130 0.00 0.00 45.83 4.00
3594 3805 3.661944 CAATACTGCAACAAAATGCCCA 58.338 40.909 0.00 0.00 45.83 5.36
3789 4000 1.134220 TGAGCGGTATGGATTGAACCC 60.134 52.381 0.00 0.00 0.00 4.11
3802 4013 1.208052 AGTGATGCAAGTATGAGCGGT 59.792 47.619 0.00 0.00 0.00 5.68
3854 4067 9.624697 GCACAAGAAAATGTTTACATTCTCATA 57.375 29.630 10.57 0.00 45.06 2.15
3855 4068 8.143193 TGCACAAGAAAATGTTTACATTCTCAT 58.857 29.630 10.57 0.00 45.06 2.90
3856 4069 7.487484 TGCACAAGAAAATGTTTACATTCTCA 58.513 30.769 10.57 0.00 45.06 3.27
3857 4070 7.115378 CCTGCACAAGAAAATGTTTACATTCTC 59.885 37.037 8.44 4.88 45.06 2.87
3858 4071 6.925165 CCTGCACAAGAAAATGTTTACATTCT 59.075 34.615 8.44 1.39 45.06 2.40
3859 4072 6.701400 ACCTGCACAAGAAAATGTTTACATTC 59.299 34.615 8.44 0.00 45.06 2.67
3861 4074 6.160576 ACCTGCACAAGAAAATGTTTACAT 57.839 33.333 0.00 0.00 38.41 2.29
3862 4075 5.590530 ACCTGCACAAGAAAATGTTTACA 57.409 34.783 0.00 0.00 0.00 2.41
3863 4076 5.623673 CGTACCTGCACAAGAAAATGTTTAC 59.376 40.000 0.00 0.00 0.00 2.01
3864 4077 5.297278 ACGTACCTGCACAAGAAAATGTTTA 59.703 36.000 0.00 0.00 0.00 2.01
3865 4078 4.097286 ACGTACCTGCACAAGAAAATGTTT 59.903 37.500 0.00 0.00 0.00 2.83
3866 4079 3.630312 ACGTACCTGCACAAGAAAATGTT 59.370 39.130 0.00 0.00 0.00 2.71
3867 4080 3.003275 CACGTACCTGCACAAGAAAATGT 59.997 43.478 0.00 0.00 0.00 2.71
3868 4081 3.554524 CACGTACCTGCACAAGAAAATG 58.445 45.455 0.00 0.00 0.00 2.32
3869 4082 2.552315 CCACGTACCTGCACAAGAAAAT 59.448 45.455 0.00 0.00 0.00 1.82
3871 4084 1.588674 CCACGTACCTGCACAAGAAA 58.411 50.000 0.00 0.00 0.00 2.52
3874 4087 2.325082 GGCCACGTACCTGCACAAG 61.325 63.158 0.00 0.00 0.00 3.16
3876 4089 4.323477 GGGCCACGTACCTGCACA 62.323 66.667 4.39 0.00 0.00 4.57
3904 4123 0.803768 CGTTCAGCATCCCTGTCGAG 60.804 60.000 0.00 0.00 42.38 4.04
3910 4129 1.260538 TGCTCTCGTTCAGCATCCCT 61.261 55.000 2.23 0.00 42.09 4.20
4440 4683 4.731612 AGCTCAGCTCCACGCACG 62.732 66.667 0.00 0.00 42.61 5.34
4441 4684 3.117171 CAGCTCAGCTCCACGCAC 61.117 66.667 0.00 0.00 42.61 5.34
4442 4685 3.292500 CTCAGCTCAGCTCCACGCA 62.293 63.158 0.00 0.00 42.61 5.24
4443 4686 2.508887 CTCAGCTCAGCTCCACGC 60.509 66.667 0.00 0.00 36.40 5.34
4444 4687 2.508887 GCTCAGCTCAGCTCCACG 60.509 66.667 0.67 0.00 36.40 4.94
4450 4693 1.521580 AAAAGTCAGCTCAGCTCAGC 58.478 50.000 0.00 0.00 36.40 4.26
4451 4694 3.401182 AGAAAAAGTCAGCTCAGCTCAG 58.599 45.455 0.00 0.00 36.40 3.35
4452 4695 3.397482 GAGAAAAAGTCAGCTCAGCTCA 58.603 45.455 0.00 0.00 36.40 4.26
4453 4696 2.741517 GGAGAAAAAGTCAGCTCAGCTC 59.258 50.000 0.00 0.00 36.40 4.09
4454 4697 2.551938 GGGAGAAAAAGTCAGCTCAGCT 60.552 50.000 0.00 0.00 40.77 4.24
4455 4698 1.809547 GGGAGAAAAAGTCAGCTCAGC 59.190 52.381 0.00 0.00 0.00 4.26
4456 4699 2.431454 GGGGAGAAAAAGTCAGCTCAG 58.569 52.381 0.00 0.00 0.00 3.35
4457 4700 1.270839 CGGGGAGAAAAAGTCAGCTCA 60.271 52.381 0.00 0.00 0.00 4.26
4574 4817 3.531934 GGCACGGTACTACTACCAAAT 57.468 47.619 0.00 0.00 42.66 2.32
4656 4899 2.744760 AGATGCTCTAACTCAGCTCCA 58.255 47.619 0.00 0.00 37.79 3.86
4658 4901 4.909696 TGTAGATGCTCTAACTCAGCTC 57.090 45.455 0.00 0.00 37.79 4.09
4659 4902 5.362143 TGATTGTAGATGCTCTAACTCAGCT 59.638 40.000 0.00 0.00 37.79 4.24
4660 4903 5.595885 TGATTGTAGATGCTCTAACTCAGC 58.404 41.667 0.00 0.00 37.40 4.26
4661 4904 6.917477 GTCTGATTGTAGATGCTCTAACTCAG 59.083 42.308 14.02 14.02 35.06 3.35
4662 4905 6.183360 GGTCTGATTGTAGATGCTCTAACTCA 60.183 42.308 0.00 0.00 29.58 3.41
4663 4906 6.212955 GGTCTGATTGTAGATGCTCTAACTC 58.787 44.000 0.00 0.00 29.58 3.01
4664 4907 5.069781 GGGTCTGATTGTAGATGCTCTAACT 59.930 44.000 0.00 0.00 29.58 2.24
4665 4908 5.293560 GGGTCTGATTGTAGATGCTCTAAC 58.706 45.833 0.00 0.00 29.58 2.34
4666 4909 4.038042 CGGGTCTGATTGTAGATGCTCTAA 59.962 45.833 0.00 0.00 29.58 2.10
4667 4910 3.570125 CGGGTCTGATTGTAGATGCTCTA 59.430 47.826 0.00 0.00 0.00 2.43
4668 4911 2.363680 CGGGTCTGATTGTAGATGCTCT 59.636 50.000 0.00 0.00 0.00 4.09
4669 4912 2.362397 TCGGGTCTGATTGTAGATGCTC 59.638 50.000 0.00 0.00 0.00 4.26
4670 4913 2.388735 TCGGGTCTGATTGTAGATGCT 58.611 47.619 0.00 0.00 0.00 3.79
4671 4914 2.890808 TCGGGTCTGATTGTAGATGC 57.109 50.000 0.00 0.00 0.00 3.91
4672 4915 4.752101 GGATTTCGGGTCTGATTGTAGATG 59.248 45.833 0.00 0.00 0.00 2.90
4673 4916 4.656112 AGGATTTCGGGTCTGATTGTAGAT 59.344 41.667 0.00 0.00 0.00 1.98
4674 4917 4.030913 AGGATTTCGGGTCTGATTGTAGA 58.969 43.478 0.00 0.00 0.00 2.59
4675 4918 4.100189 AGAGGATTTCGGGTCTGATTGTAG 59.900 45.833 0.00 0.00 0.00 2.74
4676 4919 4.030913 AGAGGATTTCGGGTCTGATTGTA 58.969 43.478 0.00 0.00 0.00 2.41
4677 4920 2.840651 AGAGGATTTCGGGTCTGATTGT 59.159 45.455 0.00 0.00 0.00 2.71
4678 4921 3.550437 AGAGGATTTCGGGTCTGATTG 57.450 47.619 0.00 0.00 0.00 2.67
4679 4922 4.576330 AAAGAGGATTTCGGGTCTGATT 57.424 40.909 0.00 0.00 0.00 2.57
4680 4923 4.469945 TGTAAAGAGGATTTCGGGTCTGAT 59.530 41.667 0.00 0.00 0.00 2.90
4681 4924 3.835978 TGTAAAGAGGATTTCGGGTCTGA 59.164 43.478 0.00 0.00 0.00 3.27
4682 4925 3.933332 GTGTAAAGAGGATTTCGGGTCTG 59.067 47.826 0.00 0.00 0.00 3.51
4683 4926 3.368116 CGTGTAAAGAGGATTTCGGGTCT 60.368 47.826 0.00 0.00 0.00 3.85
4684 4927 2.928116 CGTGTAAAGAGGATTTCGGGTC 59.072 50.000 0.00 0.00 0.00 4.46
4685 4928 2.933928 GCGTGTAAAGAGGATTTCGGGT 60.934 50.000 0.00 0.00 0.00 5.28
4686 4929 1.664151 GCGTGTAAAGAGGATTTCGGG 59.336 52.381 0.00 0.00 0.00 5.14
4687 4930 2.618053 AGCGTGTAAAGAGGATTTCGG 58.382 47.619 0.00 0.00 0.00 4.30
4688 4931 4.084013 ACAAAGCGTGTAAAGAGGATTTCG 60.084 41.667 0.00 0.00 39.29 3.46
4689 4932 5.147162 CACAAAGCGTGTAAAGAGGATTTC 58.853 41.667 0.00 0.00 38.92 2.17
4690 4933 5.108385 CACAAAGCGTGTAAAGAGGATTT 57.892 39.130 0.00 0.00 38.92 2.17
4691 4934 4.749245 CACAAAGCGTGTAAAGAGGATT 57.251 40.909 0.00 0.00 38.92 3.01
4705 4948 1.718757 CTAGGCCATCCGCACAAAGC 61.719 60.000 5.01 0.00 40.31 3.51
4706 4949 0.392998 ACTAGGCCATCCGCACAAAG 60.393 55.000 5.01 0.00 40.31 2.77
4707 4950 0.392461 GACTAGGCCATCCGCACAAA 60.392 55.000 5.01 0.00 40.31 2.83
4708 4951 1.220749 GACTAGGCCATCCGCACAA 59.779 57.895 5.01 0.00 40.31 3.33
4709 4952 1.337384 ATGACTAGGCCATCCGCACA 61.337 55.000 5.01 0.00 40.31 4.57
4710 4953 0.601311 GATGACTAGGCCATCCGCAC 60.601 60.000 5.01 0.00 40.31 5.34
4711 4954 0.760567 AGATGACTAGGCCATCCGCA 60.761 55.000 18.15 0.00 40.85 5.69
4712 4955 0.394565 AAGATGACTAGGCCATCCGC 59.605 55.000 18.15 0.00 40.85 5.54
4713 4956 2.918712 AAAGATGACTAGGCCATCCG 57.081 50.000 18.15 0.00 40.85 4.18
4714 4957 3.067320 GCAAAAAGATGACTAGGCCATCC 59.933 47.826 18.15 0.00 40.85 3.51
4715 4958 3.067320 GGCAAAAAGATGACTAGGCCATC 59.933 47.826 5.01 15.51 39.88 3.51
4716 4959 3.026694 GGCAAAAAGATGACTAGGCCAT 58.973 45.455 5.01 0.00 39.88 4.40
4717 4960 2.224992 TGGCAAAAAGATGACTAGGCCA 60.225 45.455 5.01 0.00 46.95 5.36
4718 4961 2.164422 GTGGCAAAAAGATGACTAGGCC 59.836 50.000 0.00 0.00 40.51 5.19
4728 4971 1.573108 TTGGTTGGGTGGCAAAAAGA 58.427 45.000 0.00 0.00 0.00 2.52
4756 4999 7.201956 GGATAGCCTGGACATATAGAATCGATT 60.202 40.741 11.20 11.20 0.00 3.34
4757 5000 6.266558 GGATAGCCTGGACATATAGAATCGAT 59.733 42.308 0.00 0.00 0.00 3.59
4781 5024 2.045438 TTGCGTATGGGGTGCTGG 60.045 61.111 0.00 0.00 0.00 4.85
4783 5026 1.078426 GAGTTGCGTATGGGGTGCT 60.078 57.895 0.00 0.00 0.00 4.40
4791 5034 5.270893 TGTGGTACATATGAGTTGCGTAT 57.729 39.130 10.38 0.00 44.52 3.06
4809 5052 4.379813 GCTCGGGCATTTTCATATATGTGG 60.380 45.833 0.00 1.13 38.54 4.17
4810 5053 4.216042 TGCTCGGGCATTTTCATATATGTG 59.784 41.667 5.44 4.84 44.28 3.21
4811 5054 4.397420 TGCTCGGGCATTTTCATATATGT 58.603 39.130 5.44 0.00 44.28 2.29
4825 5068 3.740128 ATCACGGATGTGCTCGGGC 62.740 63.158 0.00 0.00 46.01 6.13
4839 5082 1.805945 GCCGTCAGTCCGACATCAC 60.806 63.158 0.40 0.00 45.70 3.06
4841 5084 2.579787 CGCCGTCAGTCCGACATC 60.580 66.667 0.40 0.00 45.70 3.06
4860 5103 0.169009 GATGAGTTTTGGCGTGGCTC 59.831 55.000 0.00 0.00 0.00 4.70
4861 5104 0.537143 TGATGAGTTTTGGCGTGGCT 60.537 50.000 0.00 0.00 0.00 4.75
4866 5109 1.987770 GCATGTTGATGAGTTTTGGCG 59.012 47.619 0.00 0.00 0.00 5.69
4880 5123 0.827507 AACCAAAGGAGGCGCATGTT 60.828 50.000 10.83 0.00 0.00 2.71
4908 5151 5.049060 GCCATGCGATATTGGTTAATGTGTA 60.049 40.000 0.00 0.00 35.34 2.90
4911 5154 3.255642 GGCCATGCGATATTGGTTAATGT 59.744 43.478 0.00 0.00 35.34 2.71
4915 5158 2.158682 ACAGGCCATGCGATATTGGTTA 60.159 45.455 5.01 0.00 35.34 2.85
4926 5169 3.304928 GCACTTCATATTACAGGCCATGC 60.305 47.826 5.01 0.00 0.00 4.06
4930 5173 4.065789 GGTAGCACTTCATATTACAGGCC 58.934 47.826 0.00 0.00 0.00 5.19
4951 5194 0.734889 GTGGTGCCTCGATCATTTGG 59.265 55.000 0.00 0.00 0.00 3.28
4959 5202 2.208619 TAAACCCGTGGTGCCTCGA 61.209 57.895 13.40 0.00 35.34 4.04
4961 5204 1.673337 GGTAAACCCGTGGTGCCTC 60.673 63.158 0.00 0.00 35.34 4.70
4967 5210 3.448301 TGTATCTACAGGTAAACCCGTGG 59.552 47.826 0.00 0.00 38.74 4.94
5019 5273 4.009675 GAGCAATAGTGTGGTGGAAATGA 58.990 43.478 0.00 0.00 0.00 2.57
5028 5282 2.479566 ACCAGTGAGCAATAGTGTGG 57.520 50.000 0.00 0.00 0.00 4.17
5033 5287 7.951530 AAATTCAAAAACCAGTGAGCAATAG 57.048 32.000 0.00 0.00 0.00 1.73
5038 5292 9.650371 GAAAAATAAATTCAAAAACCAGTGAGC 57.350 29.630 0.00 0.00 0.00 4.26
5077 5332 3.184541 CATGCACAATTGAAGCTAAGCC 58.815 45.455 21.69 1.07 0.00 4.35
5131 5387 8.886719 TCTCACAATTAAAGTATGAGCATGAAG 58.113 33.333 0.00 0.00 37.34 3.02
5146 5402 5.477607 TCCCGAAAGAGTCTCACAATTAA 57.522 39.130 1.94 0.00 0.00 1.40
5155 5411 4.968971 TTACCTTTTCCCGAAAGAGTCT 57.031 40.909 0.34 0.00 46.24 3.24
5165 5421 4.694982 CCAATGCAACAATTACCTTTTCCC 59.305 41.667 0.00 0.00 0.00 3.97
5195 5452 8.461222 TCATTTAAGACATCCATTGAACATGAC 58.539 33.333 0.00 0.00 0.00 3.06
5200 5457 8.469200 TGGAATCATTTAAGACATCCATTGAAC 58.531 33.333 0.00 0.00 34.02 3.18
5205 5462 6.676558 AGGTGGAATCATTTAAGACATCCAT 58.323 36.000 0.00 0.00 38.42 3.41
5209 5466 5.989477 TCGAGGTGGAATCATTTAAGACAT 58.011 37.500 0.00 0.00 0.00 3.06
5215 5472 5.175859 GTGACTTCGAGGTGGAATCATTTA 58.824 41.667 4.31 0.00 0.00 1.40
5216 5473 4.003648 GTGACTTCGAGGTGGAATCATTT 58.996 43.478 4.31 0.00 0.00 2.32
5219 5476 1.275291 GGTGACTTCGAGGTGGAATCA 59.725 52.381 4.31 0.00 0.00 2.57
5237 5495 1.977544 CCGAGGAAGAGGTCGTGGT 60.978 63.158 0.00 0.00 34.27 4.16
5246 5504 1.273041 TGATGAAGACCCCGAGGAAGA 60.273 52.381 0.00 0.00 36.73 2.87
5265 5523 9.231297 TGAAAGAAAGATGGGAAAGTTATACTG 57.769 33.333 0.00 0.00 0.00 2.74
5291 5549 5.717119 CATGCTAAGGTTTTTGCAGATTCT 58.283 37.500 3.20 0.00 45.58 2.40
5296 5554 2.340337 GGCATGCTAAGGTTTTTGCAG 58.660 47.619 18.92 0.00 45.58 4.41
5305 5563 0.096976 CGTCAAACGGCATGCTAAGG 59.903 55.000 18.92 7.31 38.08 2.69
5328 5586 5.616270 TCTTGACCTTAATGTTGTGCTACA 58.384 37.500 0.00 0.00 0.00 2.74
5339 5597 9.561069 AGCGAAAATGTATATCTTGACCTTAAT 57.439 29.630 0.00 0.00 0.00 1.40
5341 5599 8.201464 TGAGCGAAAATGTATATCTTGACCTTA 58.799 33.333 0.00 0.00 0.00 2.69
5352 5610 8.596271 TCCGATAAATTGAGCGAAAATGTATA 57.404 30.769 0.93 0.00 0.00 1.47
5354 5612 6.912203 TCCGATAAATTGAGCGAAAATGTA 57.088 33.333 0.93 0.00 0.00 2.29
5363 5621 2.095213 TGCGTGTTCCGATAAATTGAGC 59.905 45.455 0.00 0.00 39.56 4.26
5384 5642 0.919710 GCCTAGACCAAGACCCCATT 59.080 55.000 0.00 0.00 0.00 3.16
5385 5643 0.253160 TGCCTAGACCAAGACCCCAT 60.253 55.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.