Multiple sequence alignment - TraesCS4B01G234100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G234100 chr4B 100.000 7289 0 0 1 7289 487767672 487774960 0.000000e+00 13461.0
1 TraesCS4B01G234100 chr4A 90.673 2498 109 41 3590 5976 77442697 77445181 0.000000e+00 3208.0
2 TraesCS4B01G234100 chr4A 92.982 1482 32 19 614 2074 77439414 77440844 0.000000e+00 2095.0
3 TraesCS4B01G234100 chr4A 93.402 1364 51 17 2094 3426 77441302 77442657 0.000000e+00 1984.0
4 TraesCS4B01G234100 chr4A 92.130 953 48 8 6009 6936 77445276 77446226 0.000000e+00 1319.0
5 TraesCS4B01G234100 chr4A 93.939 363 19 3 6925 7287 77447693 77448052 4.970000e-151 545.0
6 TraesCS4B01G234100 chr4A 87.671 438 39 7 1 424 77438438 77438874 5.080000e-136 496.0
7 TraesCS4B01G234100 chr4D 94.111 1766 58 18 3590 5332 396405410 396407152 0.000000e+00 2643.0
8 TraesCS4B01G234100 chr4D 95.862 1474 38 6 614 2084 396402104 396403557 0.000000e+00 2362.0
9 TraesCS4B01G234100 chr4D 94.787 1362 34 15 2094 3426 396404017 396405370 0.000000e+00 2087.0
10 TraesCS4B01G234100 chr4D 92.612 1313 63 15 6003 7289 396408036 396409340 0.000000e+00 1857.0
11 TraesCS4B01G234100 chr4D 90.265 678 25 8 5326 5980 396407326 396407985 0.000000e+00 848.0
12 TraesCS4B01G234100 chr4D 87.751 547 51 7 1 531 396401556 396402102 6.210000e-175 625.0
13 TraesCS4B01G234100 chr3B 83.406 1368 129 45 730 2069 812816580 812817877 0.000000e+00 1179.0
14 TraesCS4B01G234100 chr3B 85.391 486 37 20 5923 6405 812822648 812823102 2.380000e-129 473.0
15 TraesCS4B01G234100 chr3B 83.068 502 48 22 4829 5315 812822021 812822500 8.740000e-114 422.0
16 TraesCS4B01G234100 chr3B 85.788 387 44 5 3602 3988 812819454 812819829 4.100000e-107 399.0
17 TraesCS4B01G234100 chr3B 89.888 267 21 5 4009 4275 812821232 812821492 9.060000e-89 339.0
18 TraesCS4B01G234100 chr3D 83.333 1374 124 49 730 2069 605068476 605069778 0.000000e+00 1171.0
19 TraesCS4B01G234100 chr3D 85.379 766 70 18 997 1753 605156740 605157472 0.000000e+00 756.0
20 TraesCS4B01G234100 chr3D 85.920 696 60 21 3576 4270 605159679 605160337 0.000000e+00 708.0
21 TraesCS4B01G234100 chr3D 85.656 488 32 23 5923 6407 605071960 605072412 5.120000e-131 479.0
22 TraesCS4B01G234100 chr3D 86.374 433 44 9 3576 4006 605069938 605070357 6.660000e-125 459.0
23 TraesCS4B01G234100 chr3D 82.991 535 50 21 4829 5332 605071285 605071809 5.190000e-121 446.0
24 TraesCS4B01G234100 chr3D 83.022 536 47 26 4829 5332 605160867 605161390 5.190000e-121 446.0
25 TraesCS4B01G234100 chr3D 91.949 236 17 2 4034 4269 605070543 605070776 5.450000e-86 329.0
26 TraesCS4B01G234100 chr3D 88.192 271 22 7 2624 2887 605158460 605158727 1.530000e-81 315.0
27 TraesCS4B01G234100 chr3D 91.515 165 14 0 1905 2069 605158171 605158335 2.050000e-55 228.0
28 TraesCS4B01G234100 chr3D 88.806 134 12 2 5993 6126 605161576 605161706 2.100000e-35 161.0
29 TraesCS4B01G234100 chr3A 84.360 1023 84 36 748 1748 736125482 736126450 0.000000e+00 933.0
30 TraesCS4B01G234100 chr3A 85.920 696 67 19 3576 4270 736127996 736128661 0.000000e+00 713.0
31 TraesCS4B01G234100 chr3A 83.821 513 45 24 4829 5315 736129183 736129683 3.100000e-123 453.0
32 TraesCS4B01G234100 chr3A 83.918 485 46 15 5923 6407 736129842 736130294 1.120000e-117 435.0
33 TraesCS4B01G234100 chr3A 80.036 556 67 28 2912 3430 736127424 736127972 8.930000e-99 372.0
34 TraesCS4B01G234100 chr3A 86.121 281 26 8 2581 2854 736127134 736127408 2.570000e-74 291.0
35 TraesCS4B01G234100 chr3A 92.391 92 5 1 527 616 477416561 477416652 5.930000e-26 130.0
36 TraesCS4B01G234100 chr2B 99.419 172 1 0 3424 3595 453220193 453220022 5.490000e-81 313.0
37 TraesCS4B01G234100 chr2B 97.688 173 3 1 3424 3595 323012838 323012666 5.530000e-76 296.0
38 TraesCS4B01G234100 chr2B 88.785 107 9 2 521 625 774081601 774081706 2.130000e-25 128.0
39 TraesCS4B01G234100 chr7A 98.286 175 3 0 3421 3595 497691275 497691449 2.550000e-79 307.0
40 TraesCS4B01G234100 chr7A 90.476 105 7 2 513 615 670561168 670561271 1.280000e-27 135.0
41 TraesCS4B01G234100 chr5A 98.844 173 1 1 3424 3595 479643872 479644044 2.550000e-79 307.0
42 TraesCS4B01G234100 chr5A 97.143 175 5 0 3421 3595 473207388 473207562 5.530000e-76 296.0
43 TraesCS4B01G234100 chr7B 98.837 172 1 1 3424 3595 529142588 529142758 9.190000e-79 305.0
44 TraesCS4B01G234100 chr7B 89.623 106 7 3 526 628 522717209 522717313 1.650000e-26 132.0
45 TraesCS4B01G234100 chr1A 97.207 179 3 2 3419 3595 307400235 307400413 1.190000e-77 302.0
46 TraesCS4B01G234100 chr1A 96.571 175 6 0 3421 3595 240563269 240563443 2.570000e-74 291.0
47 TraesCS4B01G234100 chr1A 90.196 102 6 3 528 625 133417550 133417449 5.930000e-26 130.0
48 TraesCS4B01G234100 chr2A 97.076 171 5 0 3425 3595 698684515 698684345 9.250000e-74 289.0
49 TraesCS4B01G234100 chr5B 92.000 100 4 3 526 621 86069386 86069485 3.550000e-28 137.0
50 TraesCS4B01G234100 chr6B 88.889 108 9 2 512 616 56378688 56378581 5.930000e-26 130.0
51 TraesCS4B01G234100 chr5D 90.816 98 7 2 527 624 277239023 277238928 5.930000e-26 130.0
52 TraesCS4B01G234100 chr5D 78.322 143 27 4 304 443 505409771 505409912 1.010000e-13 89.8
53 TraesCS4B01G234100 chr2D 88.785 107 8 4 514 616 8781394 8781500 2.130000e-25 128.0
54 TraesCS4B01G234100 chrUn 88.889 63 7 0 6622 6684 134317573 134317511 2.180000e-10 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G234100 chr4B 487767672 487774960 7288 False 13461.000000 13461 100.000000 1 7289 1 chr4B.!!$F1 7288
1 TraesCS4B01G234100 chr4A 77438438 77448052 9614 False 1607.833333 3208 91.799500 1 7287 6 chr4A.!!$F1 7286
2 TraesCS4B01G234100 chr4D 396401556 396409340 7784 False 1737.000000 2643 92.564667 1 7289 6 chr4D.!!$F1 7288
3 TraesCS4B01G234100 chr3B 812816580 812823102 6522 False 562.400000 1179 85.508200 730 6405 5 chr3B.!!$F1 5675
4 TraesCS4B01G234100 chr3D 605068476 605072412 3936 False 576.800000 1171 86.060600 730 6407 5 chr3D.!!$F1 5677
5 TraesCS4B01G234100 chr3D 605156740 605161706 4966 False 435.666667 756 87.139000 997 6126 6 chr3D.!!$F2 5129
6 TraesCS4B01G234100 chr3A 736125482 736130294 4812 False 532.833333 933 84.029333 748 6407 6 chr3A.!!$F2 5659

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
290 295 0.826062 GGCAATGTGCTTAGCCCAAT 59.174 50.0 0.29 0.00 44.28 3.16 F
1346 1838 0.108329 ATTCGGGCTGACGTCGAATT 60.108 50.0 14.00 2.17 47.00 2.17 F
1835 2941 0.654683 GCAAAGCAAGCGAGATCGAT 59.345 50.0 6.39 0.00 43.02 3.59 F
3483 6238 0.106469 TTGCCCAAGCCAACAGTACA 60.106 50.0 0.00 0.00 38.69 2.90 F
3545 6300 0.034574 ACAAAGCAGGACCACACACA 60.035 50.0 0.00 0.00 0.00 3.72 F
3921 6785 0.178973 AAGGTTGCCCTAAAGCCGTT 60.179 50.0 0.00 0.00 41.56 4.44 F
5649 10792 0.179150 CCCTCTCGCTCTGTCTTTCG 60.179 60.0 0.00 0.00 0.00 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1662 2158 0.033894 GAAGACGGAGGAGGAGGAGT 60.034 60.000 0.00 0.0 0.00 3.85 R
2416 4297 1.906574 TCGACTGGCTGATTAACCCTT 59.093 47.619 0.00 0.0 0.00 3.95 R
3526 6281 0.034574 TGTGTGTGGTCCTGCTTTGT 60.035 50.000 0.00 0.0 0.00 2.83 R
4419 8863 0.320247 CAGAAGAGCAAGCGGACACT 60.320 55.000 0.00 0.0 0.00 3.55 R
5429 10550 0.592637 CTCGTGCACATTCTTTGCCA 59.407 50.000 18.64 0.0 39.39 4.92 R
5898 11061 0.253610 CCCACGGGCATTAACTGGTA 59.746 55.000 0.00 0.0 0.00 3.25 R
6715 12017 0.718904 CACGCGCAGTAAGTATGCAA 59.281 50.000 5.73 0.0 44.05 4.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
54 56 9.162764 GTTTCTTCTATGTCTATTGTAAGCCAA 57.837 33.333 0.00 0.00 37.49 4.52
87 92 7.772332 AGTATTTCGTATCATCACTTTGGAC 57.228 36.000 0.00 0.00 0.00 4.02
168 173 6.208402 TGGCAATCTGCTTGTTTAATTGACTA 59.792 34.615 0.00 0.00 44.28 2.59
241 246 4.324874 CCAAGATTGTTGAAGAGGGAGGAT 60.325 45.833 0.00 0.00 0.00 3.24
280 285 1.522668 TGTACAGACTGGCAATGTGC 58.477 50.000 7.51 8.53 44.08 4.57
290 295 0.826062 GGCAATGTGCTTAGCCCAAT 59.174 50.000 0.29 0.00 44.28 3.16
292 297 1.753073 GCAATGTGCTTAGCCCAATCT 59.247 47.619 0.29 0.00 40.96 2.40
294 299 3.285484 CAATGTGCTTAGCCCAATCTCT 58.715 45.455 0.29 0.00 0.00 3.10
295 300 2.698855 TGTGCTTAGCCCAATCTCTC 57.301 50.000 0.29 0.00 0.00 3.20
296 301 2.191400 TGTGCTTAGCCCAATCTCTCT 58.809 47.619 0.29 0.00 0.00 3.10
297 302 3.374764 TGTGCTTAGCCCAATCTCTCTA 58.625 45.455 0.29 0.00 0.00 2.43
337 350 1.611556 GGGAGGGGTGTTACCGTCT 60.612 63.158 5.12 0.00 43.24 4.18
350 363 5.012239 TGTTACCGTCTACTATGAAGGTGT 58.988 41.667 11.28 0.00 45.67 4.16
372 385 6.978659 GTGTCTATGGTGATTTCGTCAATCTA 59.021 38.462 10.22 0.82 41.91 1.98
374 387 7.706607 TGTCTATGGTGATTTCGTCAATCTAAG 59.293 37.037 10.22 3.40 41.91 2.18
375 388 7.921214 GTCTATGGTGATTTCGTCAATCTAAGA 59.079 37.037 10.22 0.00 41.91 2.10
385 400 5.705902 TCGTCAATCTAAGAATTGTGTCGA 58.294 37.500 0.00 0.00 37.77 4.20
425 877 2.968574 CTCATAGCCCTAGGATGTGTGT 59.031 50.000 11.48 0.00 32.20 3.72
431 883 1.610624 CCCTAGGATGTGTGTGCGTTT 60.611 52.381 11.48 0.00 0.00 3.60
503 956 3.778629 ACGTGGGTAAATTAGGATGGAGT 59.221 43.478 0.00 0.00 0.00 3.85
539 992 9.807921 TTATTTGTCTTTTCAAATACTCCCTCT 57.192 29.630 10.17 0.00 44.54 3.69
540 993 7.510549 TTTGTCTTTTCAAATACTCCCTCTG 57.489 36.000 0.00 0.00 33.23 3.35
541 994 6.187727 TGTCTTTTCAAATACTCCCTCTGT 57.812 37.500 0.00 0.00 0.00 3.41
542 995 7.311092 TGTCTTTTCAAATACTCCCTCTGTA 57.689 36.000 0.00 0.00 0.00 2.74
543 996 7.741785 TGTCTTTTCAAATACTCCCTCTGTAA 58.258 34.615 0.00 0.00 0.00 2.41
544 997 8.215050 TGTCTTTTCAAATACTCCCTCTGTAAA 58.785 33.333 0.00 0.00 0.00 2.01
545 998 8.504815 GTCTTTTCAAATACTCCCTCTGTAAAC 58.495 37.037 0.00 0.00 0.00 2.01
546 999 8.437575 TCTTTTCAAATACTCCCTCTGTAAACT 58.562 33.333 0.00 0.00 0.00 2.66
547 1000 9.720769 CTTTTCAAATACTCCCTCTGTAAACTA 57.279 33.333 0.00 0.00 0.00 2.24
557 1010 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
558 1011 9.084533 CTCCCTCTGTAAACTAATATAAGAGCT 57.915 37.037 0.00 0.00 0.00 4.09
559 1012 9.435570 TCCCTCTGTAAACTAATATAAGAGCTT 57.564 33.333 0.00 0.00 0.00 3.74
900 1366 9.533831 AGTTTTATTTTCTCTCTCTCTCTCTCT 57.466 33.333 0.00 0.00 0.00 3.10
901 1367 9.788960 GTTTTATTTTCTCTCTCTCTCTCTCTC 57.211 37.037 0.00 0.00 0.00 3.20
902 1368 9.753674 TTTTATTTTCTCTCTCTCTCTCTCTCT 57.246 33.333 0.00 0.00 0.00 3.10
904 1370 6.627087 TTTTCTCTCTCTCTCTCTCTCTCT 57.373 41.667 0.00 0.00 0.00 3.10
906 1372 5.136068 TCTCTCTCTCTCTCTCTCTCTCT 57.864 47.826 0.00 0.00 0.00 3.10
907 1373 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
908 1374 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
909 1375 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
910 1376 4.219115 TCTCTCTCTCTCTCTCTCTCTCC 58.781 52.174 0.00 0.00 0.00 3.71
911 1377 3.963374 CTCTCTCTCTCTCTCTCTCTCCA 59.037 52.174 0.00 0.00 0.00 3.86
912 1378 4.361783 TCTCTCTCTCTCTCTCTCTCCAA 58.638 47.826 0.00 0.00 0.00 3.53
913 1379 4.162320 TCTCTCTCTCTCTCTCTCTCCAAC 59.838 50.000 0.00 0.00 0.00 3.77
914 1380 3.199946 TCTCTCTCTCTCTCTCTCCAACC 59.800 52.174 0.00 0.00 0.00 3.77
916 1382 1.996291 TCTCTCTCTCTCTCCAACCCA 59.004 52.381 0.00 0.00 0.00 4.51
917 1383 2.584965 TCTCTCTCTCTCTCCAACCCAT 59.415 50.000 0.00 0.00 0.00 4.00
918 1384 2.958355 CTCTCTCTCTCTCCAACCCATC 59.042 54.545 0.00 0.00 0.00 3.51
919 1385 2.313041 TCTCTCTCTCTCCAACCCATCA 59.687 50.000 0.00 0.00 0.00 3.07
920 1386 3.052262 TCTCTCTCTCTCCAACCCATCAT 60.052 47.826 0.00 0.00 0.00 2.45
921 1387 3.303938 TCTCTCTCTCCAACCCATCATC 58.696 50.000 0.00 0.00 0.00 2.92
1114 1593 0.630673 TAAATGCCATGGCCTCCACT 59.369 50.000 33.44 14.19 41.09 4.00
1346 1838 0.108329 ATTCGGGCTGACGTCGAATT 60.108 50.000 14.00 2.17 47.00 2.17
1351 1843 1.217882 GGCTGACGTCGAATTATGGG 58.782 55.000 11.62 0.00 0.00 4.00
1354 1846 2.731976 GCTGACGTCGAATTATGGGATC 59.268 50.000 11.62 0.00 0.00 3.36
1480 1976 4.681978 GGGCGGCTGTTCGAGTGT 62.682 66.667 9.56 0.00 0.00 3.55
1662 2158 4.451150 CCGCGACTGGCTGCCTTA 62.451 66.667 21.03 0.00 40.44 2.69
1673 2169 0.689412 GCTGCCTTACTCCTCCTCCT 60.689 60.000 0.00 0.00 0.00 3.69
1687 2183 3.114647 CTCCTCCGTCTTCTCCGCG 62.115 68.421 0.00 0.00 0.00 6.46
1835 2941 0.654683 GCAAAGCAAGCGAGATCGAT 59.345 50.000 6.39 0.00 43.02 3.59
1864 2970 0.680618 ATTGACAACGTCGTACCCCA 59.319 50.000 0.00 0.00 34.95 4.96
1867 2973 2.151049 GACAACGTCGTACCCCAGCT 62.151 60.000 0.00 0.00 0.00 4.24
1889 3009 4.119862 TCAGCTGCTAATTAACGATGGAC 58.880 43.478 9.47 0.00 0.00 4.02
2380 4261 2.012673 CATCTAGGTCAAGCCAGTTGC 58.987 52.381 0.00 0.00 40.61 4.17
2400 4281 2.932187 GCTGCATGGTTGGGATTGTTTC 60.932 50.000 0.00 0.00 0.00 2.78
2402 4283 2.971330 TGCATGGTTGGGATTGTTTCTT 59.029 40.909 0.00 0.00 0.00 2.52
2415 4296 4.986054 TTGTTTCTTGTTAGCTAGGGGA 57.014 40.909 0.00 0.00 0.00 4.81
2416 4297 4.986054 TGTTTCTTGTTAGCTAGGGGAA 57.014 40.909 0.00 0.00 0.00 3.97
2467 4351 6.913873 AATTATGCATGGCAAGAAAATCAC 57.086 33.333 10.16 0.00 43.62 3.06
2561 4445 3.675619 ATGGCGCCGGTGTTACCTC 62.676 63.158 23.90 0.00 35.66 3.85
2595 4479 6.542370 TCGATCAACTCTTGTTTCTTTTTCCT 59.458 34.615 0.00 0.00 33.52 3.36
2651 4539 2.121291 TCACTCATGGGCGCATAAAA 57.879 45.000 16.74 4.36 0.00 1.52
2678 4566 1.335872 CCCGCTTTTTACTGCTTGTGG 60.336 52.381 0.00 0.00 0.00 4.17
3118 5667 4.233789 TGTGTAAAGCGATTTTCCATTGC 58.766 39.130 3.03 0.00 0.00 3.56
3145 5698 3.572682 TCGTGCTTAGGAAGTTCTTCTCA 59.427 43.478 11.53 0.00 0.00 3.27
3148 5701 6.071560 TCGTGCTTAGGAAGTTCTTCTCATTA 60.072 38.462 11.53 0.00 0.00 1.90
3171 5724 0.519961 ATTCGCCAACCTACAAACGC 59.480 50.000 0.00 0.00 0.00 4.84
3237 5799 5.130705 AGGAAACCAAAAGAGAAAGACCT 57.869 39.130 0.00 0.00 0.00 3.85
3338 5900 8.514330 AAGTATCCTATTTTATTTGACGGCAA 57.486 30.769 0.00 0.00 0.00 4.52
3426 6181 1.669265 GGCGGTTAGGCAACATCTTAC 59.331 52.381 0.00 0.00 45.92 2.34
3430 6185 4.250464 CGGTTAGGCAACATCTTACTGAA 58.750 43.478 0.00 0.00 36.29 3.02
3432 6187 5.180492 CGGTTAGGCAACATCTTACTGAAAA 59.820 40.000 0.00 0.00 36.29 2.29
3433 6188 6.293735 CGGTTAGGCAACATCTTACTGAAAAA 60.294 38.462 0.00 0.00 36.29 1.94
3435 6190 5.712152 AGGCAACATCTTACTGAAAAAGG 57.288 39.130 0.00 0.00 41.41 3.11
3437 6192 4.021981 GGCAACATCTTACTGAAAAAGGCT 60.022 41.667 0.00 0.00 0.00 4.58
3439 6194 5.985530 GCAACATCTTACTGAAAAAGGCTTT 59.014 36.000 6.68 6.68 0.00 3.51
3440 6195 6.144563 GCAACATCTTACTGAAAAAGGCTTTC 59.855 38.462 13.76 2.15 0.00 2.62
3452 6207 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
3453 6208 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
3454 6209 1.235724 GCTTTCGCCCCGCTTTATAT 58.764 50.000 0.00 0.00 0.00 0.86
3455 6210 2.419667 GCTTTCGCCCCGCTTTATATA 58.580 47.619 0.00 0.00 0.00 0.86
3456 6211 3.007635 GCTTTCGCCCCGCTTTATATAT 58.992 45.455 0.00 0.00 0.00 0.86
3457 6212 4.186159 GCTTTCGCCCCGCTTTATATATA 58.814 43.478 0.00 0.00 0.00 0.86
3458 6213 4.632688 GCTTTCGCCCCGCTTTATATATAA 59.367 41.667 0.81 0.81 0.00 0.98
3459 6214 5.122711 GCTTTCGCCCCGCTTTATATATAAA 59.877 40.000 15.47 15.47 0.00 1.40
3473 6228 5.712152 ATATATAAAGCACTTGCCCAAGC 57.288 39.130 7.88 0.00 41.99 4.01
3474 6229 0.897621 ATAAAGCACTTGCCCAAGCC 59.102 50.000 7.88 0.39 41.99 4.35
3475 6230 0.468958 TAAAGCACTTGCCCAAGCCA 60.469 50.000 7.88 0.00 41.99 4.75
3476 6231 1.336632 AAAGCACTTGCCCAAGCCAA 61.337 50.000 7.88 0.00 41.99 4.52
3477 6232 2.029518 GCACTTGCCCAAGCCAAC 59.970 61.111 7.88 0.00 41.99 3.77
3478 6233 2.795110 GCACTTGCCCAAGCCAACA 61.795 57.895 7.88 0.00 41.99 3.33
3479 6234 1.364901 CACTTGCCCAAGCCAACAG 59.635 57.895 7.88 0.00 41.99 3.16
3480 6235 1.076044 ACTTGCCCAAGCCAACAGT 60.076 52.632 7.88 0.00 41.99 3.55
3481 6236 0.184933 ACTTGCCCAAGCCAACAGTA 59.815 50.000 7.88 0.00 41.99 2.74
3482 6237 0.598065 CTTGCCCAAGCCAACAGTAC 59.402 55.000 0.00 0.00 38.69 2.73
3483 6238 0.106469 TTGCCCAAGCCAACAGTACA 60.106 50.000 0.00 0.00 38.69 2.90
3484 6239 0.106469 TGCCCAAGCCAACAGTACAA 60.106 50.000 0.00 0.00 38.69 2.41
3485 6240 1.036707 GCCCAAGCCAACAGTACAAA 58.963 50.000 0.00 0.00 0.00 2.83
3486 6241 1.000274 GCCCAAGCCAACAGTACAAAG 60.000 52.381 0.00 0.00 0.00 2.77
3487 6242 1.613437 CCCAAGCCAACAGTACAAAGG 59.387 52.381 0.00 0.00 0.00 3.11
3488 6243 2.306847 CCAAGCCAACAGTACAAAGGT 58.693 47.619 0.00 0.00 0.00 3.50
3489 6244 2.693074 CCAAGCCAACAGTACAAAGGTT 59.307 45.455 0.00 0.00 0.00 3.50
3490 6245 3.243401 CCAAGCCAACAGTACAAAGGTTC 60.243 47.826 0.00 0.00 0.00 3.62
3491 6246 3.290948 AGCCAACAGTACAAAGGTTCA 57.709 42.857 0.00 0.00 0.00 3.18
3492 6247 2.949644 AGCCAACAGTACAAAGGTTCAC 59.050 45.455 0.00 0.00 0.00 3.18
3493 6248 2.685897 GCCAACAGTACAAAGGTTCACA 59.314 45.455 0.00 0.00 0.00 3.58
3494 6249 3.488553 GCCAACAGTACAAAGGTTCACAC 60.489 47.826 0.00 0.00 0.00 3.82
3495 6250 3.692101 CCAACAGTACAAAGGTTCACACA 59.308 43.478 0.00 0.00 0.00 3.72
3496 6251 4.438200 CCAACAGTACAAAGGTTCACACAC 60.438 45.833 0.00 0.00 0.00 3.82
3497 6252 4.216411 ACAGTACAAAGGTTCACACACT 57.784 40.909 0.00 0.00 0.00 3.55
3498 6253 4.189231 ACAGTACAAAGGTTCACACACTC 58.811 43.478 0.00 0.00 0.00 3.51
3499 6254 4.188462 CAGTACAAAGGTTCACACACTCA 58.812 43.478 0.00 0.00 0.00 3.41
3500 6255 4.034048 CAGTACAAAGGTTCACACACTCAC 59.966 45.833 0.00 0.00 0.00 3.51
3501 6256 3.066291 ACAAAGGTTCACACACTCACA 57.934 42.857 0.00 0.00 0.00 3.58
3502 6257 2.747446 ACAAAGGTTCACACACTCACAC 59.253 45.455 0.00 0.00 0.00 3.82
3503 6258 2.746904 CAAAGGTTCACACACTCACACA 59.253 45.455 0.00 0.00 0.00 3.72
3504 6259 2.024176 AGGTTCACACACTCACACAC 57.976 50.000 0.00 0.00 0.00 3.82
3505 6260 1.277842 AGGTTCACACACTCACACACA 59.722 47.619 0.00 0.00 0.00 3.72
3506 6261 1.665679 GGTTCACACACTCACACACAG 59.334 52.381 0.00 0.00 0.00 3.66
3507 6262 1.665679 GTTCACACACTCACACACAGG 59.334 52.381 0.00 0.00 0.00 4.00
3508 6263 0.901827 TCACACACTCACACACAGGT 59.098 50.000 0.00 0.00 0.00 4.00
3509 6264 1.134818 TCACACACTCACACACAGGTC 60.135 52.381 0.00 0.00 0.00 3.85
3510 6265 1.134699 CACACACTCACACACAGGTCT 60.135 52.381 0.00 0.00 0.00 3.85
3511 6266 2.100749 CACACACTCACACACAGGTCTA 59.899 50.000 0.00 0.00 0.00 2.59
3512 6267 2.100916 ACACACTCACACACAGGTCTAC 59.899 50.000 0.00 0.00 0.00 2.59
3513 6268 2.100749 CACACTCACACACAGGTCTACA 59.899 50.000 0.00 0.00 0.00 2.74
3514 6269 2.100916 ACACTCACACACAGGTCTACAC 59.899 50.000 0.00 0.00 0.00 2.90
3515 6270 1.687123 ACTCACACACAGGTCTACACC 59.313 52.381 0.00 0.00 44.19 4.16
3516 6271 1.000955 CTCACACACAGGTCTACACCC 59.999 57.143 0.00 0.00 45.12 4.61
3517 6272 0.756294 CACACACAGGTCTACACCCA 59.244 55.000 0.00 0.00 45.12 4.51
3518 6273 1.140052 CACACACAGGTCTACACCCAA 59.860 52.381 0.00 0.00 45.12 4.12
3519 6274 1.140252 ACACACAGGTCTACACCCAAC 59.860 52.381 0.00 0.00 45.12 3.77
3520 6275 1.140052 CACACAGGTCTACACCCAACA 59.860 52.381 0.00 0.00 45.12 3.33
3521 6276 1.416401 ACACAGGTCTACACCCAACAG 59.584 52.381 0.00 0.00 45.12 3.16
3522 6277 1.056660 ACAGGTCTACACCCAACAGG 58.943 55.000 0.00 0.00 45.12 4.00
3523 6278 0.324943 CAGGTCTACACCCAACAGGG 59.675 60.000 0.00 0.00 45.12 4.45
3532 6287 2.736531 CCAACAGGGGCACAAAGC 59.263 61.111 0.00 0.00 44.65 3.51
3541 6296 3.840437 GCACAAAGCAGGACCACA 58.160 55.556 0.00 0.00 44.79 4.17
3542 6297 1.360192 GCACAAAGCAGGACCACAC 59.640 57.895 0.00 0.00 44.79 3.82
3543 6298 1.383456 GCACAAAGCAGGACCACACA 61.383 55.000 0.00 0.00 44.79 3.72
3544 6299 0.381801 CACAAAGCAGGACCACACAC 59.618 55.000 0.00 0.00 0.00 3.82
3545 6300 0.034574 ACAAAGCAGGACCACACACA 60.035 50.000 0.00 0.00 0.00 3.72
3546 6301 1.102154 CAAAGCAGGACCACACACAA 58.898 50.000 0.00 0.00 0.00 3.33
3547 6302 1.476085 CAAAGCAGGACCACACACAAA 59.524 47.619 0.00 0.00 0.00 2.83
3548 6303 2.071778 AAGCAGGACCACACACAAAT 57.928 45.000 0.00 0.00 0.00 2.32
3549 6304 2.949177 AGCAGGACCACACACAAATA 57.051 45.000 0.00 0.00 0.00 1.40
3550 6305 3.222173 AGCAGGACCACACACAAATAA 57.778 42.857 0.00 0.00 0.00 1.40
3551 6306 3.561143 AGCAGGACCACACACAAATAAA 58.439 40.909 0.00 0.00 0.00 1.40
3552 6307 3.569701 AGCAGGACCACACACAAATAAAG 59.430 43.478 0.00 0.00 0.00 1.85
3553 6308 3.305335 GCAGGACCACACACAAATAAAGG 60.305 47.826 0.00 0.00 0.00 3.11
3554 6309 3.255642 CAGGACCACACACAAATAAAGGG 59.744 47.826 0.00 0.00 0.00 3.95
3555 6310 3.117284 AGGACCACACACAAATAAAGGGT 60.117 43.478 0.00 0.00 0.00 4.34
3556 6311 3.639561 GGACCACACACAAATAAAGGGTT 59.360 43.478 0.00 0.00 0.00 4.11
3557 6312 4.261867 GGACCACACACAAATAAAGGGTTC 60.262 45.833 0.00 0.00 0.00 3.62
3558 6313 4.282496 ACCACACACAAATAAAGGGTTCA 58.718 39.130 0.00 0.00 0.00 3.18
3559 6314 4.898861 ACCACACACAAATAAAGGGTTCAT 59.101 37.500 0.00 0.00 0.00 2.57
3560 6315 5.221422 ACCACACACAAATAAAGGGTTCATG 60.221 40.000 0.00 0.00 0.00 3.07
3561 6316 4.685628 CACACACAAATAAAGGGTTCATGC 59.314 41.667 0.00 0.00 0.00 4.06
3562 6317 4.588528 ACACACAAATAAAGGGTTCATGCT 59.411 37.500 0.00 0.00 0.00 3.79
3563 6318 4.925054 CACACAAATAAAGGGTTCATGCTG 59.075 41.667 0.00 0.00 0.00 4.41
3564 6319 4.832266 ACACAAATAAAGGGTTCATGCTGA 59.168 37.500 0.00 0.00 0.00 4.26
3565 6320 5.047802 ACACAAATAAAGGGTTCATGCTGAG 60.048 40.000 0.00 0.00 0.00 3.35
3566 6321 4.463891 ACAAATAAAGGGTTCATGCTGAGG 59.536 41.667 0.00 0.00 0.00 3.86
3567 6322 2.806945 TAAAGGGTTCATGCTGAGGG 57.193 50.000 0.00 0.00 0.00 4.30
3568 6323 0.613012 AAAGGGTTCATGCTGAGGGC 60.613 55.000 0.00 0.00 42.22 5.19
3598 6353 6.352516 TCAACAAGCCCAAACACAAAATTAT 58.647 32.000 0.00 0.00 0.00 1.28
3744 6608 5.186603 GGAGGAAAGGCTTGAGAAAATGAAT 59.813 40.000 0.00 0.00 0.00 2.57
3846 6710 0.605860 ACCTCTTGCTGAGCTTGCTG 60.606 55.000 5.83 6.93 41.35 4.41
3921 6785 0.178973 AAGGTTGCCCTAAAGCCGTT 60.179 50.000 0.00 0.00 41.56 4.44
4006 6870 5.615925 AAACCGGACATAGCTATCTTTCT 57.384 39.130 9.46 0.00 0.00 2.52
4007 6871 4.857509 ACCGGACATAGCTATCTTTCTC 57.142 45.455 9.46 0.00 0.00 2.87
4222 8653 0.618458 TGCGTAAGGCCCTCTTGATT 59.382 50.000 0.00 0.00 42.61 2.57
4386 8830 2.124653 AGAGGCTCCGTCGTCGAT 60.125 61.111 11.71 0.00 39.71 3.59
4419 8863 1.135024 GCCACTCGTTTGGACCGTATA 60.135 52.381 8.97 0.00 39.24 1.47
4478 8922 4.006989 GGCTTTTGTTTTGGAGGTTTGTT 58.993 39.130 0.00 0.00 0.00 2.83
4729 9182 2.026915 GCTTCTTTGCCATGGGGAAATT 60.027 45.455 15.13 0.00 41.85 1.82
4832 9720 6.370994 CAGTAGTAGTATAGTATCGTGGGTGG 59.629 46.154 0.00 0.00 0.00 4.61
4958 9875 7.383102 AGTGACAAATGTTGGACTCATTATC 57.617 36.000 0.00 0.00 34.92 1.75
5093 10010 6.344500 TCTCTCTTCCTGTATGCATTTCTTC 58.656 40.000 3.54 0.00 0.00 2.87
5095 10012 4.191544 TCTTCCTGTATGCATTTCTTCGG 58.808 43.478 3.54 0.00 0.00 4.30
5132 10055 6.551601 ACTGAACTTCTTCTTCCTAGAGTTGA 59.448 38.462 0.00 0.00 0.00 3.18
5152 10079 2.049077 TGAATGTTTGCATGTGCGTC 57.951 45.000 0.01 0.00 45.83 5.19
5306 10239 5.497439 CGATGCTTGCAATTTTATTCACACG 60.497 40.000 0.00 0.00 0.00 4.49
5345 10465 6.405065 CCATGAATCGATCCATGTTTGAAAGT 60.405 38.462 21.31 0.00 38.69 2.66
5380 10500 0.956633 TCTAGCCGTCGTTGTTGTCT 59.043 50.000 0.00 0.00 0.00 3.41
5383 10503 0.666577 AGCCGTCGTTGTTGTCTAGC 60.667 55.000 0.00 0.00 0.00 3.42
5541 10684 0.515717 GACGATAACAACACGCACGC 60.516 55.000 0.00 0.00 0.00 5.34
5649 10792 0.179150 CCCTCTCGCTCTGTCTTTCG 60.179 60.000 0.00 0.00 0.00 3.46
5820 10983 0.327924 ATCAGTGGGCGATTGGAACA 59.672 50.000 0.00 0.00 0.00 3.18
5898 11061 3.311871 ACGACGCTATTAATCACGACTCT 59.688 43.478 14.79 0.00 0.00 3.24
5899 11062 4.509230 ACGACGCTATTAATCACGACTCTA 59.491 41.667 14.79 0.00 0.00 2.43
5900 11063 4.839706 CGACGCTATTAATCACGACTCTAC 59.160 45.833 14.79 1.93 0.00 2.59
5901 11064 5.105834 ACGCTATTAATCACGACTCTACC 57.894 43.478 14.79 0.00 0.00 3.18
5902 11065 4.577693 ACGCTATTAATCACGACTCTACCA 59.422 41.667 14.79 0.00 0.00 3.25
5903 11066 5.147865 CGCTATTAATCACGACTCTACCAG 58.852 45.833 4.47 0.00 0.00 4.00
5904 11067 5.277876 CGCTATTAATCACGACTCTACCAGT 60.278 44.000 4.47 0.00 38.45 4.00
5980 11150 2.104111 ACCATGACGAAGACAAACCTGA 59.896 45.455 0.00 0.00 35.03 3.86
5981 11151 3.138304 CCATGACGAAGACAAACCTGAA 58.862 45.455 0.00 0.00 35.03 3.02
5982 11152 3.563808 CCATGACGAAGACAAACCTGAAA 59.436 43.478 0.00 0.00 35.03 2.69
5983 11153 4.527564 CATGACGAAGACAAACCTGAAAC 58.472 43.478 0.00 0.00 35.03 2.78
5984 11154 2.605818 TGACGAAGACAAACCTGAAACG 59.394 45.455 0.00 0.00 0.00 3.60
5985 11155 2.606272 GACGAAGACAAACCTGAAACGT 59.394 45.455 0.00 0.00 0.00 3.99
5986 11156 3.784338 ACGAAGACAAACCTGAAACGTA 58.216 40.909 0.00 0.00 0.00 3.57
5988 11158 4.210537 ACGAAGACAAACCTGAAACGTATG 59.789 41.667 0.00 0.00 0.00 2.39
6281 11558 3.007398 GCACAGGAAGAAGAAGGAGAAGA 59.993 47.826 0.00 0.00 0.00 2.87
6321 11598 3.511699 CGTGGACATATATGATCGGTGG 58.488 50.000 19.63 0.00 0.00 4.61
6322 11599 3.262420 GTGGACATATATGATCGGTGGC 58.738 50.000 19.63 0.00 0.00 5.01
6387 11664 4.401202 ACATGTCCGTCCTTGTTTTCTTTT 59.599 37.500 0.00 0.00 0.00 2.27
6393 11670 5.186215 TCCGTCCTTGTTTTCTTTTCCTTTT 59.814 36.000 0.00 0.00 0.00 2.27
6416 11693 3.951680 GGGTTTGTGTTATGTAGATGGGG 59.048 47.826 0.00 0.00 0.00 4.96
6567 11848 0.830648 CCTCGTTCCTCCAGCCAATA 59.169 55.000 0.00 0.00 0.00 1.90
6568 11849 1.209504 CCTCGTTCCTCCAGCCAATAA 59.790 52.381 0.00 0.00 0.00 1.40
6615 11896 9.374838 AGGCAATTCATATTTTCTGCTAAAAAG 57.625 29.630 2.38 0.00 32.04 2.27
6697 11993 2.595095 CTAGGAATTGGGCCGGCA 59.405 61.111 30.85 8.42 0.00 5.69
6747 12049 2.667318 CGCGTGCGTTGATGGAACT 61.667 57.895 6.00 0.00 31.70 3.01
6849 12153 3.286353 TCCAAAGTTCTCATGCAACACA 58.714 40.909 9.31 0.00 0.00 3.72
6850 12154 3.066621 TCCAAAGTTCTCATGCAACACAC 59.933 43.478 9.31 0.00 0.00 3.82
6884 12188 8.117988 TCACACGTTACTTAACTGAATTTGAAC 58.882 33.333 0.00 0.00 34.12 3.18
6886 12190 7.066043 ACACGTTACTTAACTGAATTTGAACCA 59.934 33.333 0.00 0.00 34.12 3.67
6908 12212 5.444613 CCATCTCATACGAAACAACAGAACG 60.445 44.000 0.00 0.00 0.00 3.95
6961 13743 1.846124 TTGGACTCTTCCGCCCCTT 60.846 57.895 0.00 0.00 46.37 3.95
6963 13745 2.269241 GACTCTTCCGCCCCTTGG 59.731 66.667 0.00 0.00 0.00 3.61
6988 13770 4.827304 TTGCGAAGTTGAATGTTGATGA 57.173 36.364 0.00 0.00 0.00 2.92
6996 13778 5.475719 AGTTGAATGTTGATGAGGCAATTG 58.524 37.500 0.00 0.00 0.00 2.32
7122 13904 1.285578 CTCTCGAAGCTTTAGCCTGC 58.714 55.000 0.00 0.00 43.38 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
48 50 7.391148 ACGAAATACTTTCATATGTTGGCTT 57.609 32.000 1.90 0.00 39.63 4.35
75 77 5.149273 CACAATTTCTCGTCCAAAGTGATG 58.851 41.667 9.66 3.39 33.92 3.07
80 82 2.554032 AGGCACAATTTCTCGTCCAAAG 59.446 45.455 0.00 0.00 0.00 2.77
87 92 5.691305 TCAAAATGAAAGGCACAATTTCTCG 59.309 36.000 0.00 0.00 37.51 4.04
127 132 0.108945 GCCAGTCTTTTGCATGAGGC 60.109 55.000 0.00 0.00 45.13 4.70
168 173 5.180117 CCTGATCGTGAGTTTGAACAGAAAT 59.820 40.000 0.00 0.00 37.23 2.17
218 223 3.009473 TCCTCCCTCTTCAACAATCTTGG 59.991 47.826 0.00 0.00 0.00 3.61
241 246 7.332557 TGTACAAACAGAAGAAGTTGAGGTTA 58.667 34.615 0.00 0.00 0.00 2.85
270 275 0.541530 TTGGGCTAAGCACATTGCCA 60.542 50.000 0.00 0.00 43.39 4.92
272 277 1.753073 AGATTGGGCTAAGCACATTGC 59.247 47.619 0.77 0.00 43.39 3.56
280 285 4.888326 ATGCTAGAGAGATTGGGCTAAG 57.112 45.455 0.00 0.00 0.00 2.18
290 295 3.808466 AACATCGCAATGCTAGAGAGA 57.192 42.857 2.94 0.00 36.26 3.10
292 297 3.599343 ACAAACATCGCAATGCTAGAGA 58.401 40.909 2.94 0.00 36.26 3.10
294 299 3.750652 TGAACAAACATCGCAATGCTAGA 59.249 39.130 2.94 0.00 36.26 2.43
295 300 4.082274 TGAACAAACATCGCAATGCTAG 57.918 40.909 2.94 0.00 36.26 3.42
296 301 3.670359 GCTGAACAAACATCGCAATGCTA 60.670 43.478 2.94 0.00 36.26 3.49
297 302 2.923605 GCTGAACAAACATCGCAATGCT 60.924 45.455 2.94 0.00 36.26 3.79
337 350 7.914427 AATCACCATAGACACCTTCATAGTA 57.086 36.000 0.00 0.00 0.00 1.82
350 363 8.007405 TCTTAGATTGACGAAATCACCATAGA 57.993 34.615 14.85 8.50 46.21 1.98
385 400 0.249489 GCACCTCCGCGATACTGAAT 60.249 55.000 8.23 0.00 0.00 2.57
395 410 2.280457 GGCTATGAGCACCTCCGC 60.280 66.667 0.21 0.00 44.75 5.54
425 877 5.047847 GCATAACTCACCTCTATAAACGCA 58.952 41.667 0.00 0.00 0.00 5.24
431 883 4.223144 TGCCTGCATAACTCACCTCTATA 58.777 43.478 0.00 0.00 0.00 1.31
484 936 5.036916 ACTCACTCCATCCTAATTTACCCA 58.963 41.667 0.00 0.00 0.00 4.51
531 984 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
532 985 9.084533 AGCTCTTATATTAGTTTACAGAGGGAG 57.915 37.037 0.00 0.00 0.00 4.30
533 986 9.435570 AAGCTCTTATATTAGTTTACAGAGGGA 57.564 33.333 0.00 0.00 0.00 4.20
608 1061 9.444600 CCTCTGGACTATATTTCTCTAGTACTC 57.555 40.741 0.00 0.00 31.26 2.59
609 1062 9.173231 TCCTCTGGACTATATTTCTCTAGTACT 57.827 37.037 0.00 0.00 31.26 2.73
610 1063 9.796180 TTCCTCTGGACTATATTTCTCTAGTAC 57.204 37.037 0.00 0.00 30.70 2.73
612 1065 9.716556 TTTTCCTCTGGACTATATTTCTCTAGT 57.283 33.333 0.00 0.00 0.00 2.57
628 1081 3.823304 CCACCTCTTTTCTTTTCCTCTGG 59.177 47.826 0.00 0.00 0.00 3.86
629 1082 3.254411 GCCACCTCTTTTCTTTTCCTCTG 59.746 47.826 0.00 0.00 0.00 3.35
900 1366 2.928036 TGATGGGTTGGAGAGAGAGA 57.072 50.000 0.00 0.00 0.00 3.10
901 1367 3.307506 AGATGATGGGTTGGAGAGAGAG 58.692 50.000 0.00 0.00 0.00 3.20
902 1368 3.052262 AGAGATGATGGGTTGGAGAGAGA 60.052 47.826 0.00 0.00 0.00 3.10
904 1370 3.052262 AGAGAGATGATGGGTTGGAGAGA 60.052 47.826 0.00 0.00 0.00 3.10
906 1372 3.303938 GAGAGAGATGATGGGTTGGAGA 58.696 50.000 0.00 0.00 0.00 3.71
907 1373 3.036819 TGAGAGAGATGATGGGTTGGAG 58.963 50.000 0.00 0.00 0.00 3.86
908 1374 2.768527 GTGAGAGAGATGATGGGTTGGA 59.231 50.000 0.00 0.00 0.00 3.53
909 1375 2.502947 TGTGAGAGAGATGATGGGTTGG 59.497 50.000 0.00 0.00 0.00 3.77
910 1376 3.055602 TGTGTGAGAGAGATGATGGGTTG 60.056 47.826 0.00 0.00 0.00 3.77
911 1377 3.055530 GTGTGTGAGAGAGATGATGGGTT 60.056 47.826 0.00 0.00 0.00 4.11
912 1378 2.499289 GTGTGTGAGAGAGATGATGGGT 59.501 50.000 0.00 0.00 0.00 4.51
913 1379 2.498885 TGTGTGTGAGAGAGATGATGGG 59.501 50.000 0.00 0.00 0.00 4.00
914 1380 3.519579 GTGTGTGTGAGAGAGATGATGG 58.480 50.000 0.00 0.00 0.00 3.51
916 1382 2.416566 GCGTGTGTGTGAGAGAGATGAT 60.417 50.000 0.00 0.00 0.00 2.45
917 1383 1.068264 GCGTGTGTGTGAGAGAGATGA 60.068 52.381 0.00 0.00 0.00 2.92
918 1384 1.344458 GCGTGTGTGTGAGAGAGATG 58.656 55.000 0.00 0.00 0.00 2.90
919 1385 0.244994 GGCGTGTGTGTGAGAGAGAT 59.755 55.000 0.00 0.00 0.00 2.75
920 1386 1.106944 TGGCGTGTGTGTGAGAGAGA 61.107 55.000 0.00 0.00 0.00 3.10
921 1387 0.249447 TTGGCGTGTGTGTGAGAGAG 60.249 55.000 0.00 0.00 0.00 3.20
1346 1838 4.100963 GCATCCATACCATACGATCCCATA 59.899 45.833 0.00 0.00 0.00 2.74
1351 1843 3.055819 ACCTGCATCCATACCATACGATC 60.056 47.826 0.00 0.00 0.00 3.69
1354 1846 2.839486 ACCTGCATCCATACCATACG 57.161 50.000 0.00 0.00 0.00 3.06
1480 1976 2.520982 ATGCTCCGCGGGTAGCTA 60.521 61.111 31.44 21.16 45.59 3.32
1563 2059 3.102972 CTGAGGAAGTTGAGGGAGATGA 58.897 50.000 0.00 0.00 0.00 2.92
1662 2158 0.033894 GAAGACGGAGGAGGAGGAGT 60.034 60.000 0.00 0.00 0.00 3.85
1673 2169 4.116328 CTGCGCGGAGAAGACGGA 62.116 66.667 24.56 0.00 0.00 4.69
1687 2183 1.208614 CTTCTTGGCTTCGTGCTGC 59.791 57.895 0.00 0.00 42.39 5.25
1835 2941 2.811431 GACGTTGTCAATTCCACATCCA 59.189 45.455 0.00 0.00 32.09 3.41
1867 2973 4.119862 GTCCATCGTTAATTAGCAGCTGA 58.880 43.478 20.43 0.00 0.00 4.26
1889 3009 2.474266 CACCAACGAACGCATCCG 59.526 61.111 0.00 0.00 41.14 4.18
2084 3204 4.410099 TGGACCTGATGCAGAAAGAAAAT 58.590 39.130 0.00 0.00 32.44 1.82
2088 3208 3.009363 TGATTGGACCTGATGCAGAAAGA 59.991 43.478 0.00 0.00 32.44 2.52
2092 3212 2.093288 GTCTGATTGGACCTGATGCAGA 60.093 50.000 0.00 0.00 32.44 4.26
2218 4087 7.332926 GCCCATATATGTAGTGATGAGAAACTG 59.667 40.741 11.73 0.00 0.00 3.16
2297 4171 8.792633 CCTAGTATTCACTATTCTCTCAAGAGG 58.207 40.741 7.17 0.00 38.34 3.69
2380 4261 2.564062 AGAAACAATCCCAACCATGCAG 59.436 45.455 0.00 0.00 0.00 4.41
2400 4281 2.576648 ACCCTTTCCCCTAGCTAACAAG 59.423 50.000 0.00 0.00 0.00 3.16
2402 4283 2.354261 ACCCTTTCCCCTAGCTAACA 57.646 50.000 0.00 0.00 0.00 2.41
2415 4296 2.304761 TCGACTGGCTGATTAACCCTTT 59.695 45.455 0.00 0.00 0.00 3.11
2416 4297 1.906574 TCGACTGGCTGATTAACCCTT 59.093 47.619 0.00 0.00 0.00 3.95
2513 4397 5.887598 TGTGCATGAATGGTTTTCTAGCTAT 59.112 36.000 0.00 0.00 0.00 2.97
2561 4445 8.417780 AAACAAGAGTTGATCGATCTAATCAG 57.582 34.615 29.28 24.06 38.17 2.90
2595 4479 2.180159 GAGGGCAAAGTAGGACGCCA 62.180 60.000 0.00 0.00 46.75 5.69
2651 4539 2.866065 GCAGTAAAAAGCGGGCAACATT 60.866 45.455 0.00 0.00 39.74 2.71
2678 4566 7.856145 ATAAAGATCATTTGAGTGTGACCTC 57.144 36.000 0.00 0.00 0.00 3.85
2772 4667 2.787601 AGTTGCAATTGTGTGAGCAG 57.212 45.000 0.59 0.00 38.35 4.24
2925 4828 2.254464 GCTAATAGCGTGCCTGGCC 61.254 63.158 17.53 6.66 0.00 5.36
3007 4925 7.889073 TCCCTCTACATCAATCTAGGTATACAC 59.111 40.741 5.01 0.00 0.00 2.90
3008 4926 7.996788 TCCCTCTACATCAATCTAGGTATACA 58.003 38.462 5.01 0.00 0.00 2.29
3118 5667 5.000012 AGAACTTCCTAAGCACGACTATG 58.000 43.478 0.00 0.00 0.00 2.23
3145 5698 5.362105 TTGTAGGTTGGCGAATAGGTAAT 57.638 39.130 0.00 0.00 0.00 1.89
3148 5701 3.340928 GTTTGTAGGTTGGCGAATAGGT 58.659 45.455 0.00 0.00 0.00 3.08
3437 6192 6.730960 CTTTATATATAAAGCGGGGCGAAA 57.269 37.500 25.10 1.66 41.69 3.46
3447 6202 7.809806 GCTTGGGCAAGTGCTTTATATATAAAG 59.190 37.037 29.34 29.34 43.61 1.85
3449 6204 6.208599 GGCTTGGGCAAGTGCTTTATATATAA 59.791 38.462 2.85 0.81 40.45 0.98
3451 6206 4.524328 GGCTTGGGCAAGTGCTTTATATAT 59.476 41.667 2.85 0.00 40.45 0.86
3452 6207 3.888930 GGCTTGGGCAAGTGCTTTATATA 59.111 43.478 2.85 0.00 40.45 0.86
3453 6208 2.695147 GGCTTGGGCAAGTGCTTTATAT 59.305 45.455 2.85 0.00 40.45 0.86
3454 6209 2.099405 GGCTTGGGCAAGTGCTTTATA 58.901 47.619 2.85 0.00 40.45 0.98
3455 6210 0.897621 GGCTTGGGCAAGTGCTTTAT 59.102 50.000 2.85 0.00 40.45 1.40
3456 6211 0.468958 TGGCTTGGGCAAGTGCTTTA 60.469 50.000 2.85 0.00 40.45 1.85
3457 6212 1.336632 TTGGCTTGGGCAAGTGCTTT 61.337 50.000 2.85 0.00 42.98 3.51
3458 6213 1.761667 TTGGCTTGGGCAAGTGCTT 60.762 52.632 2.85 0.00 42.98 3.91
3459 6214 2.123338 TTGGCTTGGGCAAGTGCT 60.123 55.556 2.85 0.00 42.98 4.40
3464 6219 0.106469 TGTACTGTTGGCTTGGGCAA 60.106 50.000 2.45 2.45 45.54 4.52
3465 6220 0.106469 TTGTACTGTTGGCTTGGGCA 60.106 50.000 0.00 0.00 40.87 5.36
3466 6221 1.000274 CTTTGTACTGTTGGCTTGGGC 60.000 52.381 0.00 0.00 37.82 5.36
3467 6222 1.613437 CCTTTGTACTGTTGGCTTGGG 59.387 52.381 0.00 0.00 0.00 4.12
3468 6223 2.306847 ACCTTTGTACTGTTGGCTTGG 58.693 47.619 0.00 0.00 0.00 3.61
3469 6224 3.380004 TGAACCTTTGTACTGTTGGCTTG 59.620 43.478 0.00 0.00 0.00 4.01
3470 6225 3.380320 GTGAACCTTTGTACTGTTGGCTT 59.620 43.478 0.00 0.00 0.00 4.35
3471 6226 2.949644 GTGAACCTTTGTACTGTTGGCT 59.050 45.455 0.00 0.00 0.00 4.75
3472 6227 2.685897 TGTGAACCTTTGTACTGTTGGC 59.314 45.455 0.00 0.00 0.00 4.52
3473 6228 3.692101 TGTGTGAACCTTTGTACTGTTGG 59.308 43.478 0.00 0.00 0.00 3.77
3474 6229 4.394920 AGTGTGTGAACCTTTGTACTGTTG 59.605 41.667 0.00 0.00 0.00 3.33
3475 6230 4.585879 AGTGTGTGAACCTTTGTACTGTT 58.414 39.130 0.00 0.00 0.00 3.16
3476 6231 4.189231 GAGTGTGTGAACCTTTGTACTGT 58.811 43.478 0.00 0.00 0.00 3.55
3477 6232 4.034048 GTGAGTGTGTGAACCTTTGTACTG 59.966 45.833 0.00 0.00 0.00 2.74
3478 6233 4.189231 GTGAGTGTGTGAACCTTTGTACT 58.811 43.478 0.00 0.00 0.00 2.73
3479 6234 3.936453 TGTGAGTGTGTGAACCTTTGTAC 59.064 43.478 0.00 0.00 0.00 2.90
3480 6235 3.936453 GTGTGAGTGTGTGAACCTTTGTA 59.064 43.478 0.00 0.00 0.00 2.41
3481 6236 2.747446 GTGTGAGTGTGTGAACCTTTGT 59.253 45.455 0.00 0.00 0.00 2.83
3482 6237 2.746904 TGTGTGAGTGTGTGAACCTTTG 59.253 45.455 0.00 0.00 0.00 2.77
3483 6238 2.747446 GTGTGTGAGTGTGTGAACCTTT 59.253 45.455 0.00 0.00 0.00 3.11
3484 6239 2.290008 TGTGTGTGAGTGTGTGAACCTT 60.290 45.455 0.00 0.00 0.00 3.50
3485 6240 1.277842 TGTGTGTGAGTGTGTGAACCT 59.722 47.619 0.00 0.00 0.00 3.50
3486 6241 1.665679 CTGTGTGTGAGTGTGTGAACC 59.334 52.381 0.00 0.00 0.00 3.62
3487 6242 1.665679 CCTGTGTGTGAGTGTGTGAAC 59.334 52.381 0.00 0.00 0.00 3.18
3488 6243 1.277842 ACCTGTGTGTGAGTGTGTGAA 59.722 47.619 0.00 0.00 0.00 3.18
3489 6244 0.901827 ACCTGTGTGTGAGTGTGTGA 59.098 50.000 0.00 0.00 0.00 3.58
3490 6245 1.134699 AGACCTGTGTGTGAGTGTGTG 60.135 52.381 0.00 0.00 0.00 3.82
3491 6246 1.195115 AGACCTGTGTGTGAGTGTGT 58.805 50.000 0.00 0.00 0.00 3.72
3492 6247 2.100749 TGTAGACCTGTGTGTGAGTGTG 59.899 50.000 0.00 0.00 0.00 3.82
3493 6248 2.100916 GTGTAGACCTGTGTGTGAGTGT 59.899 50.000 0.00 0.00 0.00 3.55
3494 6249 2.545952 GGTGTAGACCTGTGTGTGAGTG 60.546 54.545 0.76 0.00 39.47 3.51
3495 6250 1.687123 GGTGTAGACCTGTGTGTGAGT 59.313 52.381 0.76 0.00 39.47 3.41
3496 6251 1.000955 GGGTGTAGACCTGTGTGTGAG 59.999 57.143 9.23 0.00 42.66 3.51
3497 6252 1.045407 GGGTGTAGACCTGTGTGTGA 58.955 55.000 9.23 0.00 42.66 3.58
3498 6253 0.756294 TGGGTGTAGACCTGTGTGTG 59.244 55.000 9.23 0.00 42.66 3.82
3499 6254 1.140252 GTTGGGTGTAGACCTGTGTGT 59.860 52.381 9.23 0.00 42.66 3.72
3500 6255 1.140052 TGTTGGGTGTAGACCTGTGTG 59.860 52.381 9.23 0.00 42.66 3.82
3501 6256 1.416401 CTGTTGGGTGTAGACCTGTGT 59.584 52.381 9.23 0.00 42.66 3.72
3502 6257 1.270839 CCTGTTGGGTGTAGACCTGTG 60.271 57.143 9.23 0.00 42.66 3.66
3503 6258 1.056660 CCTGTTGGGTGTAGACCTGT 58.943 55.000 9.23 0.00 42.66 4.00
3504 6259 3.935993 CCTGTTGGGTGTAGACCTG 57.064 57.895 9.23 0.00 42.66 4.00
3515 6270 2.091102 CTGCTTTGTGCCCCTGTTGG 62.091 60.000 0.00 0.00 42.00 3.77
3516 6271 1.364901 CTGCTTTGTGCCCCTGTTG 59.635 57.895 0.00 0.00 42.00 3.33
3517 6272 1.833934 CCTGCTTTGTGCCCCTGTT 60.834 57.895 0.00 0.00 42.00 3.16
3518 6273 2.203538 CCTGCTTTGTGCCCCTGT 60.204 61.111 0.00 0.00 42.00 4.00
3519 6274 2.115910 TCCTGCTTTGTGCCCCTG 59.884 61.111 0.00 0.00 42.00 4.45
3520 6275 2.116125 GTCCTGCTTTGTGCCCCT 59.884 61.111 0.00 0.00 42.00 4.79
3521 6276 2.991540 GGTCCTGCTTTGTGCCCC 60.992 66.667 0.00 0.00 42.00 5.80
3522 6277 2.203480 TGGTCCTGCTTTGTGCCC 60.203 61.111 0.00 0.00 42.00 5.36
3523 6278 1.827789 TGTGGTCCTGCTTTGTGCC 60.828 57.895 0.00 0.00 42.00 5.01
3524 6279 1.360192 GTGTGGTCCTGCTTTGTGC 59.640 57.895 0.00 0.00 43.25 4.57
3525 6280 0.381801 GTGTGTGGTCCTGCTTTGTG 59.618 55.000 0.00 0.00 0.00 3.33
3526 6281 0.034574 TGTGTGTGGTCCTGCTTTGT 60.035 50.000 0.00 0.00 0.00 2.83
3527 6282 1.102154 TTGTGTGTGGTCCTGCTTTG 58.898 50.000 0.00 0.00 0.00 2.77
3528 6283 1.846007 TTTGTGTGTGGTCCTGCTTT 58.154 45.000 0.00 0.00 0.00 3.51
3529 6284 2.071778 ATTTGTGTGTGGTCCTGCTT 57.928 45.000 0.00 0.00 0.00 3.91
3530 6285 2.949177 TATTTGTGTGTGGTCCTGCT 57.051 45.000 0.00 0.00 0.00 4.24
3531 6286 3.305335 CCTTTATTTGTGTGTGGTCCTGC 60.305 47.826 0.00 0.00 0.00 4.85
3532 6287 3.255642 CCCTTTATTTGTGTGTGGTCCTG 59.744 47.826 0.00 0.00 0.00 3.86
3533 6288 3.117284 ACCCTTTATTTGTGTGTGGTCCT 60.117 43.478 0.00 0.00 0.00 3.85
3534 6289 3.227614 ACCCTTTATTTGTGTGTGGTCC 58.772 45.455 0.00 0.00 0.00 4.46
3535 6290 4.339814 TGAACCCTTTATTTGTGTGTGGTC 59.660 41.667 0.00 0.00 0.00 4.02
3536 6291 4.282496 TGAACCCTTTATTTGTGTGTGGT 58.718 39.130 0.00 0.00 0.00 4.16
3537 6292 4.927978 TGAACCCTTTATTTGTGTGTGG 57.072 40.909 0.00 0.00 0.00 4.17
3538 6293 4.685628 GCATGAACCCTTTATTTGTGTGTG 59.314 41.667 0.00 0.00 0.00 3.82
3539 6294 4.588528 AGCATGAACCCTTTATTTGTGTGT 59.411 37.500 0.00 0.00 0.00 3.72
3540 6295 4.925054 CAGCATGAACCCTTTATTTGTGTG 59.075 41.667 0.00 0.00 39.69 3.82
3541 6296 4.832266 TCAGCATGAACCCTTTATTTGTGT 59.168 37.500 0.00 0.00 45.97 3.72
3542 6297 5.389859 TCAGCATGAACCCTTTATTTGTG 57.610 39.130 0.00 0.00 45.97 3.33
3561 6316 0.535780 TTGTTGAGCTGTGCCCTCAG 60.536 55.000 0.00 0.00 40.16 3.35
3562 6317 0.535780 CTTGTTGAGCTGTGCCCTCA 60.536 55.000 0.00 0.00 37.54 3.86
3563 6318 2.251600 CTTGTTGAGCTGTGCCCTC 58.748 57.895 0.00 0.00 0.00 4.30
3564 6319 4.488790 CTTGTTGAGCTGTGCCCT 57.511 55.556 0.00 0.00 0.00 5.19
3573 6328 2.957491 TTGTGTTTGGGCTTGTTGAG 57.043 45.000 0.00 0.00 0.00 3.02
3574 6329 3.685139 TTTTGTGTTTGGGCTTGTTGA 57.315 38.095 0.00 0.00 0.00 3.18
3587 6342 8.658609 GCAAAGTCATATGCAATAATTTTGTGT 58.341 29.630 0.00 0.00 42.12 3.72
3670 6534 1.426621 CTCGCGACTGCATGCAAAT 59.573 52.632 22.88 13.05 42.97 2.32
3744 6608 1.402896 CCATGCTCGAGGCCTCCTTA 61.403 60.000 27.20 11.79 40.92 2.69
3846 6710 1.315257 ATGTCTCATGCCCGGCAAAC 61.315 55.000 18.00 12.68 43.62 2.93
3921 6785 1.068333 GTACGTACCCGCAGTTCTTCA 60.068 52.381 15.00 0.00 37.70 3.02
4034 8289 4.980339 ATCCATGTATGCACTGGATGTA 57.020 40.909 19.38 2.30 45.75 2.29
4039 8470 1.951602 CACCATCCATGTATGCACTGG 59.048 52.381 0.00 0.00 0.00 4.00
4044 8475 3.068448 TGCATTTCACCATCCATGTATGC 59.932 43.478 0.00 0.00 37.04 3.14
4419 8863 0.320247 CAGAAGAGCAAGCGGACACT 60.320 55.000 0.00 0.00 0.00 3.55
4478 8922 4.639906 TGGCCACGCACTGCATCA 62.640 61.111 0.00 0.00 0.00 3.07
4803 9259 7.274468 CCCACGATACTATACTACTACTGTACG 59.726 44.444 0.00 0.00 0.00 3.67
4832 9720 6.802608 TGTATAGTTCCATACAGTAGCACAC 58.197 40.000 0.00 0.00 36.66 3.82
5132 10055 2.598589 GACGCACATGCAAACATTCAT 58.401 42.857 4.49 0.00 42.21 2.57
5152 10079 2.223829 GGATGTCATACCCTGTCAGTCG 60.224 54.545 0.00 0.00 0.00 4.18
5238 10165 2.677875 GGGTTGAAGCTGCTGGGG 60.678 66.667 1.35 0.00 0.00 4.96
5306 10239 5.123820 TCGATTCATGGTTCTGGTTGATTTC 59.876 40.000 0.00 0.00 0.00 2.17
5356 10476 3.119245 ACAACAACGACGGCTAGACATAT 60.119 43.478 0.00 0.00 0.00 1.78
5367 10487 1.493772 TTGGCTAGACAACAACGACG 58.506 50.000 7.01 0.00 0.00 5.12
5383 10503 2.810274 CGTCATGAAGGCCTATGATTGG 59.190 50.000 19.00 9.64 35.91 3.16
5429 10550 0.592637 CTCGTGCACATTCTTTGCCA 59.407 50.000 18.64 0.00 39.39 4.92
5474 10599 4.336713 TCAGCTAGTCTATGCACTACTGTG 59.663 45.833 7.50 0.00 46.37 3.66
5541 10684 1.308069 CCTTTCATGTCAGGCCCGTG 61.308 60.000 0.00 0.00 0.00 4.94
5649 10792 1.807573 CTCCTTTGACCGAGCGAGC 60.808 63.158 0.00 0.00 0.00 5.03
5883 11046 9.961265 CATTAACTGGTAGAGTCGTGATTAATA 57.039 33.333 0.00 0.00 31.73 0.98
5898 11061 0.253610 CCCACGGGCATTAACTGGTA 59.746 55.000 0.00 0.00 0.00 3.25
5899 11062 1.001393 CCCACGGGCATTAACTGGT 60.001 57.895 0.00 0.00 0.00 4.00
5900 11063 1.752694 CCCCACGGGCATTAACTGG 60.753 63.158 0.00 0.00 35.35 4.00
5901 11064 0.322997 TTCCCCACGGGCATTAACTG 60.323 55.000 0.00 0.00 43.94 3.16
5902 11065 0.629058 ATTCCCCACGGGCATTAACT 59.371 50.000 0.00 0.00 43.94 2.24
5903 11066 2.351706 TATTCCCCACGGGCATTAAC 57.648 50.000 0.00 0.00 43.94 2.01
5904 11067 2.175931 ACATATTCCCCACGGGCATTAA 59.824 45.455 0.00 0.00 43.94 1.40
5980 11150 3.436704 CCTGACTGAATGCACATACGTTT 59.563 43.478 0.00 0.00 0.00 3.60
5981 11151 3.002791 CCTGACTGAATGCACATACGTT 58.997 45.455 0.00 0.00 0.00 3.99
5982 11152 2.028112 ACCTGACTGAATGCACATACGT 60.028 45.455 0.00 0.00 0.00 3.57
5983 11153 2.621338 ACCTGACTGAATGCACATACG 58.379 47.619 0.00 0.00 0.00 3.06
5984 11154 4.002982 TGAACCTGACTGAATGCACATAC 58.997 43.478 0.00 0.00 0.00 2.39
5985 11155 4.020307 TCTGAACCTGACTGAATGCACATA 60.020 41.667 0.00 0.00 0.00 2.29
5986 11156 3.079578 CTGAACCTGACTGAATGCACAT 58.920 45.455 0.00 0.00 0.00 3.21
5988 11158 2.740981 CTCTGAACCTGACTGAATGCAC 59.259 50.000 0.00 0.00 0.00 4.57
6192 11469 2.084681 GTACACGAACGCCTGGTCG 61.085 63.158 0.53 0.53 0.00 4.79
6281 11558 2.140717 CGGTCAAAACGCTTTACTCCT 58.859 47.619 0.00 0.00 0.00 3.69
6321 11598 0.948678 CCCTAGACGCTAGACTGAGC 59.051 60.000 13.37 0.00 39.20 4.26
6322 11599 1.141254 TCCCCTAGACGCTAGACTGAG 59.859 57.143 13.37 0.00 0.00 3.35
6387 11664 6.366340 TCTACATAACACAAACCCAAAAGGA 58.634 36.000 0.00 0.00 39.89 3.36
6393 11670 4.568804 CCCCATCTACATAACACAAACCCA 60.569 45.833 0.00 0.00 0.00 4.51
6416 11693 7.771826 TGGTAATACCCTAGCATCTTTGTTTAC 59.228 37.037 7.03 0.00 37.50 2.01
6586 11867 8.706492 TTAGCAGAAAATATGAATTGCCTTTG 57.294 30.769 0.00 0.00 32.21 2.77
6607 11888 7.515684 CGCCAAATATGAATTGCTCTTTTTAGC 60.516 37.037 0.00 0.00 43.08 3.09
6615 11896 3.360249 AGCGCCAAATATGAATTGCTC 57.640 42.857 2.29 0.00 0.00 4.26
6668 11949 0.977395 ATTCCTAGGAGGGTATGCGC 59.023 55.000 12.26 0.00 35.59 6.09
6707 12009 4.620609 CGCAGTAAGTATGCAATGCAAAAA 59.379 37.500 13.45 0.00 43.62 1.94
6715 12017 0.718904 CACGCGCAGTAAGTATGCAA 59.281 50.000 5.73 0.00 44.05 4.08
6726 12028 4.799473 CCATCAACGCACGCGCAG 62.799 66.667 12.02 0.00 44.19 5.18
6736 12038 2.778299 TGTGGCAGTAGTTCCATCAAC 58.222 47.619 0.00 0.00 34.47 3.18
6849 12153 7.170320 CAGTTAAGTAACGTGTGATAAACTGGT 59.830 37.037 16.19 0.00 40.96 4.00
6850 12154 7.383029 TCAGTTAAGTAACGTGTGATAAACTGG 59.617 37.037 20.40 9.51 40.86 4.00
6884 12188 5.444613 CGTTCTGTTGTTTCGTATGAGATGG 60.445 44.000 0.00 0.00 0.00 3.51
6886 12190 4.625742 CCGTTCTGTTGTTTCGTATGAGAT 59.374 41.667 0.00 0.00 0.00 2.75
6917 12221 4.648626 TCCCTGCCACACAGCTGC 62.649 66.667 15.27 0.00 45.78 5.25
6961 13743 2.100584 ACATTCAACTTCGCAAAAGCCA 59.899 40.909 0.00 0.00 0.00 4.75
6963 13745 3.796178 TCAACATTCAACTTCGCAAAAGC 59.204 39.130 0.00 0.00 0.00 3.51
6964 13746 5.686841 TCATCAACATTCAACTTCGCAAAAG 59.313 36.000 0.00 0.00 0.00 2.27
6965 13747 5.586339 TCATCAACATTCAACTTCGCAAAA 58.414 33.333 0.00 0.00 0.00 2.44
6971 13753 4.771590 TGCCTCATCAACATTCAACTTC 57.228 40.909 0.00 0.00 0.00 3.01
6996 13778 2.494870 ACCTGAATTTGAGCAATCTGGC 59.505 45.455 8.68 0.00 0.00 4.85
7082 13864 5.645497 AGAGTTGCTGGATCTAAAACATCAC 59.355 40.000 6.95 0.00 0.00 3.06
7122 13904 2.287308 CGCTAGAGCTAGTGCCTTACAG 60.287 54.545 5.26 0.00 40.80 2.74
7218 14002 1.368209 CTTGCATGCTTGGCACCAA 59.632 52.632 20.33 1.46 43.04 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.