Multiple sequence alignment - TraesCS4B01G234000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G234000 chr4B 100.000 7227 0 0 1 7227 487267229 487274455 0.000000e+00 13346.0
1 TraesCS4B01G234000 chr4B 81.778 450 74 8 13 458 111304321 111304766 3.180000e-98 370.0
2 TraesCS4B01G234000 chr4B 93.810 210 7 5 3590 3795 63757117 63757324 1.960000e-80 311.0
3 TraesCS4B01G234000 chr4A 94.869 1871 79 7 653 2519 77090733 77092590 0.000000e+00 2907.0
4 TraesCS4B01G234000 chr4A 92.023 1755 83 21 3776 5492 77093692 77095427 0.000000e+00 2412.0
5 TraesCS4B01G234000 chr4A 93.321 1587 69 12 5509 7072 77095413 77096985 0.000000e+00 2309.0
6 TraesCS4B01G234000 chr4A 92.468 1009 38 18 2598 3587 77092586 77093575 0.000000e+00 1408.0
7 TraesCS4B01G234000 chr4A 89.037 602 66 0 1 602 77085918 77086519 0.000000e+00 747.0
8 TraesCS4B01G234000 chr4A 82.418 455 77 3 1 454 401657690 401658142 1.890000e-105 394.0
9 TraesCS4B01G234000 chr4A 92.188 64 4 1 7165 7227 142446678 142446741 9.990000e-14 89.8
10 TraesCS4B01G234000 chr4D 93.204 1707 76 20 5509 7175 395957995 395959701 0.000000e+00 2473.0
11 TraesCS4B01G234000 chr4D 94.107 1103 46 3 3776 4876 395950856 395951941 0.000000e+00 1659.0
12 TraesCS4B01G234000 chr4D 89.628 887 62 18 2717 3597 395950011 395950873 0.000000e+00 1101.0
13 TraesCS4B01G234000 chr4D 91.801 744 39 10 599 1324 395947665 395948404 0.000000e+00 1016.0
14 TraesCS4B01G234000 chr4D 94.720 625 29 3 4871 5492 395957386 395958009 0.000000e+00 968.0
15 TraesCS4B01G234000 chr4D 87.854 601 50 11 1 601 395947055 395947632 0.000000e+00 684.0
16 TraesCS4B01G234000 chr4D 92.115 279 19 2 2088 2365 395949464 395949740 2.440000e-104 390.0
17 TraesCS4B01G234000 chr4D 93.671 237 15 0 1504 1740 395948686 395948922 8.920000e-94 355.0
18 TraesCS4B01G234000 chr4D 78.912 441 79 8 27 456 79048847 79048410 3.300000e-73 287.0
19 TraesCS4B01G234000 chr4D 91.346 208 8 5 1888 2095 395949016 395949213 7.140000e-70 276.0
20 TraesCS4B01G234000 chr4D 80.635 315 49 8 13 320 377456246 377455937 4.360000e-57 233.0
21 TraesCS4B01G234000 chr4D 94.000 150 8 1 1354 1503 395948403 395948551 7.290000e-55 226.0
22 TraesCS4B01G234000 chr4D 79.439 321 61 5 3 320 11581449 11581131 9.440000e-54 222.0
23 TraesCS4B01G234000 chr4D 80.130 307 51 7 12 311 68508453 68508756 3.390000e-53 220.0
24 TraesCS4B01G234000 chr4D 85.271 129 17 2 331 457 360334859 360334731 1.640000e-26 132.0
25 TraesCS4B01G234000 chr4D 96.250 80 3 0 2440 2519 395949770 395949849 1.640000e-26 132.0
26 TraesCS4B01G234000 chr4D 89.091 55 3 3 7165 7216 459819227 459819173 1.680000e-06 65.8
27 TraesCS4B01G234000 chr6D 84.922 451 64 4 8 456 414324245 414324693 3.070000e-123 453.0
28 TraesCS4B01G234000 chr6D 82.960 446 72 4 13 456 152625727 152625284 4.060000e-107 399.0
29 TraesCS4B01G234000 chr6D 81.797 423 68 6 37 457 338996285 338995870 5.370000e-91 346.0
30 TraesCS4B01G234000 chr6D 79.476 458 78 7 13 455 121034781 121034325 1.960000e-80 311.0
31 TraesCS4B01G234000 chr6D 79.348 460 78 13 8 456 198410113 198409660 2.530000e-79 307.0
32 TraesCS4B01G234000 chr6D 78.824 425 73 10 43 456 24490321 24489903 3.320000e-68 270.0
33 TraesCS4B01G234000 chr6D 88.535 157 15 2 5665 5821 392273227 392273074 3.440000e-43 187.0
34 TraesCS4B01G234000 chr5A 84.768 453 61 8 8 456 173199300 173199748 1.430000e-121 448.0
35 TraesCS4B01G234000 chr5A 84.615 65 5 5 7159 7219 136393172 136393109 7.830000e-05 60.2
36 TraesCS4B01G234000 chr2A 89.589 365 14 7 6644 7004 125616890 125616546 6.650000e-120 442.0
37 TraesCS4B01G234000 chr2A 88.344 163 15 3 5660 5821 330080232 330080073 7.400000e-45 193.0
38 TraesCS4B01G234000 chr2A 92.222 90 6 1 6991 7079 125611662 125611573 7.610000e-25 126.0
39 TraesCS4B01G234000 chr3D 85.024 414 60 2 43 456 442342104 442342515 3.120000e-113 420.0
40 TraesCS4B01G234000 chr3D 82.637 455 75 4 3 456 241728218 241727767 4.060000e-107 399.0
41 TraesCS4B01G234000 chr2B 83.406 458 68 4 1 458 188266431 188265982 1.120000e-112 418.0
42 TraesCS4B01G234000 chr2B 99.444 180 1 0 3596 3775 675339772 675339951 1.940000e-85 327.0
43 TraesCS4B01G234000 chr2B 88.462 156 15 2 5666 5821 403702282 403702434 1.240000e-42 185.0
44 TraesCS4B01G234000 chr2B 98.824 85 1 0 2517 2601 582644959 582644875 1.260000e-32 152.0
45 TraesCS4B01G234000 chr2B 95.455 88 4 0 2514 2601 536806675 536806588 2.720000e-29 141.0
46 TraesCS4B01G234000 chr2B 93.478 92 6 0 2514 2605 166044481 166044572 3.520000e-28 137.0
47 TraesCS4B01G234000 chr2B 86.441 59 4 4 7162 7216 198593078 198593020 2.180000e-05 62.1
48 TraesCS4B01G234000 chr2B 88.235 51 5 1 3408 3457 70875823 70875773 7.830000e-05 60.2
49 TraesCS4B01G234000 chr2D 82.969 458 72 3 3 456 117794412 117794867 6.750000e-110 409.0
50 TraesCS4B01G234000 chr2D 89.764 127 11 2 1729 1855 610294538 610294414 2.090000e-35 161.0
51 TraesCS4B01G234000 chr7D 83.114 456 64 13 8 457 537243825 537243377 3.140000e-108 403.0
52 TraesCS4B01G234000 chr7D 80.131 458 89 1 1 456 281874948 281875405 2.500000e-89 340.0
53 TraesCS4B01G234000 chr7D 79.866 447 83 7 9 452 328130043 328129601 3.250000e-83 320.0
54 TraesCS4B01G234000 chr7D 86.154 65 6 3 7165 7226 528578523 528578459 4.680000e-07 67.6
55 TraesCS4B01G234000 chr1B 81.360 456 80 5 3 456 591415169 591415621 4.120000e-97 366.0
56 TraesCS4B01G234000 chr1B 98.901 182 2 0 3596 3777 225811969 225811788 6.990000e-85 326.0
57 TraesCS4B01G234000 chr1B 90.909 99 7 2 2512 2610 438032954 438032858 1.640000e-26 132.0
58 TraesCS4B01G234000 chr5D 81.015 453 75 10 9 456 435214718 435214272 4.150000e-92 350.0
59 TraesCS4B01G234000 chr5D 78.233 464 78 16 10 457 156759860 156760316 7.140000e-70 276.0
60 TraesCS4B01G234000 chr5D 90.446 157 13 1 5665 5821 175300058 175299904 9.500000e-49 206.0
61 TraesCS4B01G234000 chr5D 89.091 55 3 2 7165 7216 418877084 418877030 1.680000e-06 65.8
62 TraesCS4B01G234000 chr6A 80.580 448 80 7 13 456 133918952 133918508 8.980000e-89 339.0
63 TraesCS4B01G234000 chr6A 79.570 465 74 16 5 455 294981118 294981575 5.440000e-81 313.0
64 TraesCS4B01G234000 chr6A 78.337 457 81 13 9 454 304456201 304455752 5.520000e-71 279.0
65 TraesCS4B01G234000 chr6A 88.485 165 14 4 5666 5828 17378067 17377906 2.060000e-45 195.0
66 TraesCS4B01G234000 chr6A 86.747 166 18 3 5658 5822 532026604 532026766 1.600000e-41 182.0
67 TraesCS4B01G234000 chr6A 94.444 90 5 0 2517 2606 93285788 93285699 9.780000e-29 139.0
68 TraesCS4B01G234000 chr6B 99.448 181 1 0 3596 3776 227272928 227272748 5.400000e-86 329.0
69 TraesCS4B01G234000 chr6B 92.308 117 9 0 1743 1859 618132655 618132539 4.480000e-37 167.0
70 TraesCS4B01G234000 chr6B 92.308 117 9 0 1743 1859 638921003 638920887 4.480000e-37 167.0
71 TraesCS4B01G234000 chr7B 99.444 180 1 0 3596 3775 700410740 700410919 1.940000e-85 327.0
72 TraesCS4B01G234000 chr7B 90.984 122 9 2 1743 1864 444184124 444184005 5.800000e-36 163.0
73 TraesCS4B01G234000 chr7B 87.770 139 16 1 1725 1863 252178043 252178180 2.090000e-35 161.0
74 TraesCS4B01G234000 chr7B 95.402 87 4 0 2515 2601 525957319 525957233 9.780000e-29 139.0
75 TraesCS4B01G234000 chr7B 88.889 54 4 2 7165 7216 475662627 475662574 1.680000e-06 65.8
76 TraesCS4B01G234000 chr3B 97.396 192 5 0 3584 3775 595691963 595692154 1.940000e-85 327.0
77 TraesCS4B01G234000 chr3B 97.884 189 3 1 3586 3774 473397098 473396911 6.990000e-85 326.0
78 TraesCS4B01G234000 chr3B 95.455 88 4 0 2517 2604 456070047 456069960 2.720000e-29 141.0
79 TraesCS4B01G234000 chr3B 95.402 87 4 0 2515 2601 10622511 10622597 9.780000e-29 139.0
80 TraesCS4B01G234000 chr5B 99.441 179 1 0 3596 3774 573807570 573807748 6.990000e-85 326.0
81 TraesCS4B01G234000 chr5B 99.441 179 1 0 3596 3774 654755743 654755921 6.990000e-85 326.0
82 TraesCS4B01G234000 chr5B 88.125 160 15 3 5666 5825 403708731 403708576 3.440000e-43 187.0
83 TraesCS4B01G234000 chr5B 90.400 125 12 0 1727 1851 124772380 124772504 1.610000e-36 165.0
84 TraesCS4B01G234000 chr5B 86.429 140 17 2 1723 1862 6886384 6886521 1.260000e-32 152.0
85 TraesCS4B01G234000 chr5B 82.143 84 11 3 7146 7227 344615949 344615868 1.300000e-07 69.4
86 TraesCS4B01G234000 chr1D 79.720 429 73 11 37 456 142905859 142905436 1.520000e-76 298.0
87 TraesCS4B01G234000 chr1D 79.137 417 67 16 52 457 416133635 416133228 3.320000e-68 270.0
88 TraesCS4B01G234000 chr1D 77.996 459 68 11 13 457 170750945 170751384 2.590000e-64 257.0
89 TraesCS4B01G234000 chr1D 76.989 465 83 14 11 456 367978526 367978067 2.010000e-60 244.0
90 TraesCS4B01G234000 chr1D 78.481 395 64 12 43 420 161717928 161717538 9.370000e-59 239.0
91 TraesCS4B01G234000 chr1D 80.844 308 52 3 13 314 281222058 281221752 1.210000e-57 235.0
92 TraesCS4B01G234000 chr1D 76.586 457 74 15 15 456 259092868 259093306 3.390000e-53 220.0
93 TraesCS4B01G234000 chr1D 79.747 316 53 7 13 320 170740332 170740644 1.220000e-52 219.0
94 TraesCS4B01G234000 chr1D 81.923 260 38 5 13 265 204847472 204847215 2.040000e-50 211.0
95 TraesCS4B01G234000 chr1D 90.083 121 12 0 1735 1855 284915949 284915829 2.700000e-34 158.0
96 TraesCS4B01G234000 chr1D 95.402 87 4 0 2515 2601 302256709 302256623 9.780000e-29 139.0
97 TraesCS4B01G234000 chr1D 81.159 138 24 2 321 456 301679594 301679457 7.670000e-20 110.0
98 TraesCS4B01G234000 chr3A 90.741 54 3 2 7165 7216 610544600 610544653 3.620000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G234000 chr4B 487267229 487274455 7226 False 13346.000000 13346 100.00000 1 7227 1 chr4B.!!$F3 7226
1 TraesCS4B01G234000 chr4A 77090733 77096985 6252 False 2259.000000 2907 93.17025 653 7072 4 chr4A.!!$F4 6419
2 TraesCS4B01G234000 chr4A 77085918 77086519 601 False 747.000000 747 89.03700 1 602 1 chr4A.!!$F1 601
3 TraesCS4B01G234000 chr4D 395957386 395959701 2315 False 1720.500000 2473 93.96200 4871 7175 2 chr4D.!!$F3 2304
4 TraesCS4B01G234000 chr4D 395947055 395951941 4886 False 648.777778 1659 92.30800 1 4876 9 chr4D.!!$F2 4875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 951 0.036306 TCGCCTCTTTCTTTGTCCCC 59.964 55.000 0.0 0.0 0.00 4.81 F
1010 1062 0.461548 GGACAGGAGATGATCACGCA 59.538 55.000 0.0 0.0 0.00 5.24 F
2427 2889 0.107017 ATGTCCAGAGATTTGGGCGG 60.107 55.000 0.0 0.0 45.97 6.13 F
3685 4339 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.0 0.0 0.00 2.74 F
3742 4396 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.0 0.0 44.78 4.85 F
3755 4409 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.0 0.0 38.40 4.00 F
3756 4410 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.0 0.0 41.70 3.66 F
5185 5868 1.068741 GTCTGGTAAGGGATGTAGGCG 59.931 57.143 0.0 0.0 0.00 5.52 F
5610 6302 1.272212 TCGAAGCACACACTAGCATGA 59.728 47.619 0.0 0.0 0.00 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2415 2877 0.107165 AAGGTAGCCGCCCAAATCTC 60.107 55.000 0.00 0.0 0.00 2.75 R
2590 3052 0.179134 CAAGCGAAGTACTCCCTCCG 60.179 60.000 0.00 0.0 0.00 4.63 R
3712 4366 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.0 0.00 2.69 R
5210 5893 0.811219 CAGCTGAAATCGCCGGATCA 60.811 55.000 8.42 0.0 30.81 2.92 R
5610 6302 2.224378 TGCAGCAGCTAAACACTCTCTT 60.224 45.455 1.76 0.0 42.74 2.85 R
5627 6319 2.838386 ACAATAGAGCGCATTTGCAG 57.162 45.000 11.47 0.0 42.21 4.41 R
5693 6386 8.696043 TGGAGACCATATTGAAATATCCAAAG 57.304 34.615 0.00 0.0 29.35 2.77 R
6207 6914 0.888736 TCACATGGACAAGGGCAACG 60.889 55.000 0.00 0.0 37.60 4.10 R
6662 7372 1.810030 GGGACGATCTGCCGACAAC 60.810 63.158 0.00 0.0 0.00 3.32 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 6.128035 GGTTTTTCTTGATTGCTTTTGGTTGT 60.128 34.615 0.00 0.00 0.00 3.32
61 62 6.419980 TTTTCTTGATTGCTTTTGGTTGTG 57.580 33.333 0.00 0.00 0.00 3.33
71 72 1.846007 TTTGGTTGTGGTGAGCTTGT 58.154 45.000 0.00 0.00 0.00 3.16
85 86 5.182001 GGTGAGCTTGTGAGTACATTCAAAT 59.818 40.000 0.00 0.00 36.53 2.32
96 97 8.322906 TGAGTACATTCAAATTACTCACCTTG 57.677 34.615 15.78 0.00 44.29 3.61
97 98 7.936847 TGAGTACATTCAAATTACTCACCTTGT 59.063 33.333 15.78 0.00 44.29 3.16
138 139 3.429085 GTGATGCCGTGATTGATTGTTC 58.571 45.455 0.00 0.00 0.00 3.18
164 165 0.809241 GATCCCAAGTCTGCGAGCTG 60.809 60.000 0.00 0.00 0.00 4.24
168 169 1.220206 CAAGTCTGCGAGCTGGGAT 59.780 57.895 0.00 0.00 0.00 3.85
230 231 1.674611 CGTCGTTGTTCCGCTGCTAG 61.675 60.000 0.00 0.00 0.00 3.42
244 245 3.611766 CGCTGCTAGATGTTATTCCGCTA 60.612 47.826 0.00 0.00 0.00 4.26
247 248 5.335740 GCTGCTAGATGTTATTCCGCTACTA 60.336 44.000 0.00 0.00 0.00 1.82
248 249 6.626181 GCTGCTAGATGTTATTCCGCTACTAT 60.626 42.308 0.00 0.00 0.00 2.12
260 261 4.392047 TCCGCTACTATGAGTTATTCCGA 58.608 43.478 0.00 0.00 0.00 4.55
284 285 2.906047 GCATAGAGCCACCTTAGCG 58.094 57.895 0.00 0.00 37.23 4.26
293 294 1.146041 CACCTTAGCGGGCATAGCA 59.854 57.895 0.00 0.00 36.97 3.49
379 380 4.215109 AGTTGTCCTGTTTTATGCCAAGT 58.785 39.130 0.00 0.00 0.00 3.16
380 381 4.037923 AGTTGTCCTGTTTTATGCCAAGTG 59.962 41.667 0.00 0.00 0.00 3.16
391 392 2.264005 TGCCAAGTGGTGTCGTATTT 57.736 45.000 0.00 0.00 37.57 1.40
392 393 2.577700 TGCCAAGTGGTGTCGTATTTT 58.422 42.857 0.00 0.00 37.57 1.82
420 421 3.979347 ACTTGATCTCTGGGCTGGAATAT 59.021 43.478 0.00 0.00 0.00 1.28
426 427 3.404769 TCTCTGGGCTGGAATATAGGGTA 59.595 47.826 0.00 0.00 0.00 3.69
443 444 3.108376 GGGTATTCCAGTTCCTCTGAGT 58.892 50.000 3.66 0.00 46.27 3.41
513 514 5.455326 GCTTGATTACATCTCCCACCATACT 60.455 44.000 0.00 0.00 0.00 2.12
607 643 2.691011 CCTCCCAAACTTTCAAAACCGA 59.309 45.455 0.00 0.00 0.00 4.69
619 655 8.089115 ACTTTCAAAACCGAACAATTCAAAAA 57.911 26.923 0.00 0.00 0.00 1.94
637 673 4.663636 AAAATAACGAGCAAAGAGTCGG 57.336 40.909 0.00 0.00 40.59 4.79
644 680 1.741770 GCAAAGAGTCGGTGGCGAT 60.742 57.895 0.00 0.00 0.00 4.58
648 684 0.320374 AAGAGTCGGTGGCGATGAAA 59.680 50.000 0.00 0.00 0.00 2.69
649 685 0.537188 AGAGTCGGTGGCGATGAAAT 59.463 50.000 0.00 0.00 0.00 2.17
660 710 0.302890 CGATGAAATCAGAGCGGCAC 59.697 55.000 1.45 0.00 45.97 5.01
677 727 0.865769 CACGTGCTGGTGAAAGTACC 59.134 55.000 0.82 0.00 40.38 3.34
808 858 3.632080 ATCCACGACCCAACGGCA 61.632 61.111 0.00 0.00 37.61 5.69
834 884 1.369091 GCCAACAGTAGGACGCATGG 61.369 60.000 0.00 0.00 0.00 3.66
849 899 2.000447 GCATGGTACGAGTCCTTGTTC 59.000 52.381 0.00 0.00 34.13 3.18
850 900 2.353803 GCATGGTACGAGTCCTTGTTCT 60.354 50.000 0.00 0.00 34.13 3.01
851 901 3.512680 CATGGTACGAGTCCTTGTTCTC 58.487 50.000 0.00 0.00 0.00 2.87
854 904 1.891150 GTACGAGTCCTTGTTCTCCCA 59.109 52.381 0.00 0.00 0.00 4.37
855 905 1.645710 ACGAGTCCTTGTTCTCCCAT 58.354 50.000 0.00 0.00 0.00 4.00
856 906 2.816411 ACGAGTCCTTGTTCTCCCATA 58.184 47.619 0.00 0.00 0.00 2.74
858 908 2.761208 CGAGTCCTTGTTCTCCCATACT 59.239 50.000 0.00 0.00 0.00 2.12
859 909 3.181485 CGAGTCCTTGTTCTCCCATACTC 60.181 52.174 0.00 0.00 0.00 2.59
899 951 0.036306 TCGCCTCTTTCTTTGTCCCC 59.964 55.000 0.00 0.00 0.00 4.81
927 979 1.268352 CCTTCGTTCCGCCAATTTCAA 59.732 47.619 0.00 0.00 0.00 2.69
928 980 2.287909 CCTTCGTTCCGCCAATTTCAAA 60.288 45.455 0.00 0.00 0.00 2.69
929 981 3.376540 CTTCGTTCCGCCAATTTCAAAA 58.623 40.909 0.00 0.00 0.00 2.44
1010 1062 0.461548 GGACAGGAGATGATCACGCA 59.538 55.000 0.00 0.00 0.00 5.24
1242 1294 4.191544 GTCGATTGAACATGAGGATTGGA 58.808 43.478 0.00 0.00 0.00 3.53
1307 1361 9.425248 TTTGCTTCCTTGATTATATGGATCTTT 57.575 29.630 0.00 0.00 0.00 2.52
1317 1371 8.599792 TGATTATATGGATCTTTGCTGATCTGA 58.400 33.333 3.42 0.00 41.72 3.27
1338 1392 2.987413 TAGCTCGTGGTTGCATTTTG 57.013 45.000 0.00 0.00 0.00 2.44
1389 1443 5.198207 ACAGGGAAGGGATTTTAATTACCG 58.802 41.667 0.00 0.00 0.00 4.02
1392 1446 5.655090 AGGGAAGGGATTTTAATTACCGTTG 59.345 40.000 0.00 0.00 32.02 4.10
1401 1455 9.857957 GGATTTTAATTACCGTTGTTATTTGGA 57.142 29.630 0.00 0.00 0.00 3.53
1576 1764 4.309099 TGTGAATTGCTTGGATTGCTTTC 58.691 39.130 0.00 0.00 0.00 2.62
1655 1843 8.301252 ACTTTCTGTAGGGTTTACATTGTTTT 57.699 30.769 0.00 0.00 0.00 2.43
1746 1934 5.449107 TCGCTATCATAACTACAACCTCC 57.551 43.478 0.00 0.00 0.00 4.30
1750 1938 6.349115 CGCTATCATAACTACAACCTCCGTAT 60.349 42.308 0.00 0.00 0.00 3.06
1775 1963 5.823045 GGAAATACTTGTCGGAGAAATGGAT 59.177 40.000 0.00 0.00 39.69 3.41
1839 2027 7.607991 ACATCAATTTCTCCGACAAGTATTTCT 59.392 33.333 0.00 0.00 0.00 2.52
1840 2028 9.098355 CATCAATTTCTCCGACAAGTATTTCTA 57.902 33.333 0.00 0.00 0.00 2.10
1874 2062 7.284489 GGATTATATGAGTAAAACTTGGCACCA 59.716 37.037 0.00 0.00 0.00 4.17
1921 2124 4.334481 ACGTCAAGGTTTGGTCTAAAACAG 59.666 41.667 0.00 0.00 41.00 3.16
2024 2227 1.902556 GCTTTACCGTGGGCTAGGA 59.097 57.895 0.00 0.00 0.00 2.94
2117 2578 2.287009 GCGCTTAGTATGTTGGAATGCC 60.287 50.000 0.00 0.00 0.00 4.40
2171 2632 3.371102 TGAAGTGTACAGAGAGTGTGC 57.629 47.619 0.00 0.00 40.69 4.57
2182 2643 5.204292 ACAGAGAGTGTGCAAGAGGATATA 58.796 41.667 0.00 0.00 38.28 0.86
2221 2682 0.608130 TGCAGTTCATACAGACCGCT 59.392 50.000 0.00 0.00 0.00 5.52
2281 2742 4.081586 GCTACTTAGGGCTACTGAACTGTT 60.082 45.833 0.00 0.00 0.00 3.16
2301 2762 2.226330 TGAATGGCTGTAACACCACAC 58.774 47.619 0.00 0.00 39.19 3.82
2337 2799 4.473477 AACCCTCTGCTACTATGACAAC 57.527 45.455 0.00 0.00 0.00 3.32
2415 2877 0.528924 CATGGGTGTGCAATGTCCAG 59.471 55.000 0.00 0.00 0.00 3.86
2426 2888 1.402968 CAATGTCCAGAGATTTGGGCG 59.597 52.381 0.00 0.00 45.97 6.13
2427 2889 0.107017 ATGTCCAGAGATTTGGGCGG 60.107 55.000 0.00 0.00 45.97 6.13
2438 2900 0.608035 TTTGGGCGGCTACCTTTCTG 60.608 55.000 9.56 0.00 0.00 3.02
2473 2935 5.627182 ATGCCACTGTTCTCTATCTCATT 57.373 39.130 0.00 0.00 0.00 2.57
2595 3057 8.530269 AACGCTATTATATTTCTTTACGGAGG 57.470 34.615 0.00 0.00 0.00 4.30
2596 3058 7.095270 ACGCTATTATATTTCTTTACGGAGGG 58.905 38.462 0.00 0.00 0.00 4.30
2597 3059 7.039504 ACGCTATTATATTTCTTTACGGAGGGA 60.040 37.037 0.00 0.00 0.00 4.20
2598 3060 7.488471 CGCTATTATATTTCTTTACGGAGGGAG 59.512 40.741 0.00 0.00 0.00 4.30
2599 3061 8.312564 GCTATTATATTTCTTTACGGAGGGAGT 58.687 37.037 0.00 0.00 0.00 3.85
2602 3064 8.773033 TTATATTTCTTTACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
2603 3065 7.672122 ATATTTCTTTACGGAGGGAGTACTT 57.328 36.000 0.00 0.00 0.00 2.24
2604 3066 5.397142 TTTCTTTACGGAGGGAGTACTTC 57.603 43.478 0.00 0.00 0.00 3.01
2639 3101 4.201851 CCACTTCTCTGCATGTAATTTCGG 60.202 45.833 0.00 0.00 0.00 4.30
2680 3142 8.882736 CCTTTTTGCTTTTGTAAATCTGACTTT 58.117 29.630 0.00 0.00 34.19 2.66
2730 3241 7.630242 TCTCTACCTTATTTTTGAAGCATGG 57.370 36.000 0.00 0.00 0.00 3.66
2841 3352 5.048991 CAGCCACGTTACTTTTCCATTACTT 60.049 40.000 0.00 0.00 0.00 2.24
2844 3355 5.470777 CCACGTTACTTTTCCATTACTTCCA 59.529 40.000 0.00 0.00 0.00 3.53
2898 3409 5.656859 TCACATAGTGCATACTTAGTGGTCT 59.343 40.000 0.00 0.00 39.22 3.85
2916 3427 2.093783 GTCTGCCCAAAATAAGTCGTCG 59.906 50.000 0.00 0.00 0.00 5.12
2926 3437 2.907910 TAAGTCGTCGCTTGACCTAC 57.092 50.000 10.80 0.00 39.56 3.18
2950 3462 6.386927 ACCAGGAATGTGATACAGATTTAGGA 59.613 38.462 0.00 0.00 27.44 2.94
2973 3485 9.050154 AGGAACATTTAATCCAATTCTTTCCAT 57.950 29.630 0.00 0.00 38.23 3.41
3016 3528 8.576442 CCTTTTGTACTGTTTGATAACCAGAAT 58.424 33.333 0.00 0.00 33.15 2.40
3022 3547 7.027874 ACTGTTTGATAACCAGAATTAGGGA 57.972 36.000 2.04 0.00 33.15 4.20
3058 3583 7.789831 AGAGGGGTCATAAGTCATAACTCATAA 59.210 37.037 0.00 0.00 33.48 1.90
3075 3600 7.856145 ACTCATAAAGTGAAAGGCTCATAAG 57.144 36.000 0.00 0.00 36.65 1.73
3211 3736 8.235230 AGGAAGAGGACATGTCTATTCCTATTA 58.765 37.037 33.96 0.00 40.31 0.98
3296 3821 8.978539 TGTTTCATAATCGCATATCTGTAGAAC 58.021 33.333 0.00 0.00 0.00 3.01
3298 3823 8.748380 TTCATAATCGCATATCTGTAGAACTG 57.252 34.615 0.00 0.00 0.00 3.16
3301 3826 4.569761 TCGCATATCTGTAGAACTGGTC 57.430 45.455 0.00 0.00 0.00 4.02
3440 3965 2.726821 CTGGACATAAACAGCCATGGT 58.273 47.619 14.67 0.00 0.00 3.55
3459 3984 3.054434 TGGTGCCATGTAAAGTCAGCTAT 60.054 43.478 0.00 0.00 0.00 2.97
3559 4090 5.353678 ACAGCTCAAGAGAATAAGCATGTTC 59.646 40.000 0.32 0.00 37.22 3.18
3566 4097 8.314021 TCAAGAGAATAAGCATGTTCTGTTCTA 58.686 33.333 5.63 0.00 37.92 2.10
3597 4251 6.702329 TGAAAGAAGCCTCTAGTAAAGGAAG 58.298 40.000 0.00 0.00 35.83 3.46
3598 4252 5.685520 AAGAAGCCTCTAGTAAAGGAAGG 57.314 43.478 0.00 0.00 35.83 3.46
3599 4253 4.034410 AGAAGCCTCTAGTAAAGGAAGGG 58.966 47.826 0.00 0.00 35.83 3.95
3600 4254 2.120312 AGCCTCTAGTAAAGGAAGGGC 58.880 52.381 0.00 0.00 35.83 5.19
3602 4256 2.158885 GCCTCTAGTAAAGGAAGGGCAG 60.159 54.545 0.00 0.00 38.35 4.85
3603 4257 2.158885 CCTCTAGTAAAGGAAGGGCAGC 60.159 54.545 0.00 0.00 35.83 5.25
3604 4258 1.838077 TCTAGTAAAGGAAGGGCAGCC 59.162 52.381 1.26 1.26 0.00 4.85
3605 4259 0.916809 TAGTAAAGGAAGGGCAGCCC 59.083 55.000 24.90 24.90 45.90 5.19
3615 4269 4.794648 GGCAGCCCGGTGCATGTA 62.795 66.667 19.47 0.00 45.93 2.29
3616 4270 3.204827 GCAGCCCGGTGCATGTAG 61.205 66.667 13.70 0.91 43.41 2.74
3617 4271 3.204827 CAGCCCGGTGCATGTAGC 61.205 66.667 15.92 2.56 44.83 3.58
3618 4272 3.402681 AGCCCGGTGCATGTAGCT 61.403 61.111 15.92 4.82 45.94 3.32
3619 4273 2.897350 GCCCGGTGCATGTAGCTC 60.897 66.667 11.25 0.00 45.94 4.09
3625 4279 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3626 4280 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3627 4281 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3628 4282 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3631 4285 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3646 4300 3.400054 CAGGGTCGGGGAAGGGTC 61.400 72.222 0.00 0.00 0.00 4.46
3647 4301 4.735599 AGGGTCGGGGAAGGGTCC 62.736 72.222 0.00 0.00 44.10 4.46
3653 4307 3.714001 GGGGAAGGGTCCGACCAC 61.714 72.222 19.43 8.70 46.04 4.16
3654 4308 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3655 4309 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3656 4310 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3657 4311 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3658 4312 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3659 4313 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3660 4314 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3670 4324 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3671 4325 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3672 4326 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3673 4327 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3674 4328 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3675 4329 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3676 4330 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3677 4331 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3678 4332 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3679 4333 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3680 4334 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3681 4335 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3682 4336 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3683 4337 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3684 4338 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3685 4339 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3686 4340 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3687 4341 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3688 4342 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3689 4343 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3690 4344 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3691 4345 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3692 4346 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3693 4347 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3694 4348 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3695 4349 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3696 4350 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3709 4363 4.008074 TCTGTAAGAGGCTGTTTTCAGG 57.992 45.455 20.26 9.17 42.82 3.86
3710 4364 3.646162 TCTGTAAGAGGCTGTTTTCAGGA 59.354 43.478 20.26 10.59 42.82 3.86
3711 4365 3.748568 CTGTAAGAGGCTGTTTTCAGGAC 59.251 47.826 0.90 0.00 42.11 3.85
3712 4366 4.503991 CTGTAAGAGGCTGTTTTCAGGACT 60.504 45.833 0.90 0.00 42.11 3.85
3713 4367 5.974725 CTGTAAGAGGCTGTTTTCAGGACTT 60.975 44.000 0.90 0.00 42.11 3.01
3714 4368 7.944990 CTGTAAGAGGCTGTTTTCAGGACTTG 61.945 46.154 0.90 0.00 42.11 3.16
3715 4369 9.990885 CTGTAAGAGGCTGTTTTCAGGACTTGA 62.991 44.444 0.90 0.00 42.11 3.02
3717 4371 2.952310 AGGCTGTTTTCAGGACTTGAAC 59.048 45.455 0.00 0.00 45.22 3.18
3718 4372 2.034685 GGCTGTTTTCAGGACTTGAACC 59.965 50.000 0.00 0.00 45.22 3.62
3719 4373 2.034685 GCTGTTTTCAGGACTTGAACCC 59.965 50.000 0.00 0.00 45.22 4.11
3720 4374 2.290641 CTGTTTTCAGGACTTGAACCCG 59.709 50.000 0.00 0.00 45.22 5.28
3721 4375 2.294979 GTTTTCAGGACTTGAACCCGT 58.705 47.619 0.00 0.00 45.22 5.28
3722 4376 1.961793 TTTCAGGACTTGAACCCGTG 58.038 50.000 0.00 0.00 45.22 4.94
3723 4377 1.124780 TTCAGGACTTGAACCCGTGA 58.875 50.000 0.00 0.00 40.82 4.35
3724 4378 0.391597 TCAGGACTTGAACCCGTGAC 59.608 55.000 0.00 0.00 31.34 3.67
3725 4379 0.602905 CAGGACTTGAACCCGTGACC 60.603 60.000 0.00 0.00 0.00 4.02
3726 4380 0.763223 AGGACTTGAACCCGTGACCT 60.763 55.000 0.00 0.00 0.00 3.85
3727 4381 0.320508 GGACTTGAACCCGTGACCTC 60.321 60.000 0.00 0.00 0.00 3.85
3728 4382 0.391597 GACTTGAACCCGTGACCTCA 59.608 55.000 0.00 0.00 0.00 3.86
3729 4383 1.002087 GACTTGAACCCGTGACCTCAT 59.998 52.381 0.00 0.00 0.00 2.90
3730 4384 1.270839 ACTTGAACCCGTGACCTCATG 60.271 52.381 0.00 0.00 0.00 3.07
3741 4395 2.154139 ACCTCATGGTCACAAGGCA 58.846 52.632 0.00 0.00 44.78 4.75
3742 4396 0.037303 ACCTCATGGTCACAAGGCAG 59.963 55.000 0.00 0.00 44.78 4.85
3743 4397 1.310933 CCTCATGGTCACAAGGCAGC 61.311 60.000 0.00 0.00 0.00 5.25
3744 4398 0.607217 CTCATGGTCACAAGGCAGCA 60.607 55.000 0.00 0.00 0.00 4.41
3745 4399 0.607217 TCATGGTCACAAGGCAGCAG 60.607 55.000 0.00 0.00 0.00 4.24
3746 4400 1.975407 ATGGTCACAAGGCAGCAGC 60.975 57.895 0.00 0.00 41.10 5.25
3747 4401 2.282040 GGTCACAAGGCAGCAGCT 60.282 61.111 0.00 0.00 41.70 4.24
3748 4402 1.900498 GGTCACAAGGCAGCAGCTT 60.900 57.895 0.00 0.00 41.70 3.74
3749 4403 1.458639 GGTCACAAGGCAGCAGCTTT 61.459 55.000 0.00 0.00 41.17 3.51
3750 4404 1.238439 GTCACAAGGCAGCAGCTTTA 58.762 50.000 0.00 0.00 38.07 1.85
3751 4405 1.068954 GTCACAAGGCAGCAGCTTTAC 60.069 52.381 0.00 0.00 38.07 2.01
3752 4406 0.242017 CACAAGGCAGCAGCTTTACC 59.758 55.000 0.00 0.00 38.07 2.85
3753 4407 0.178992 ACAAGGCAGCAGCTTTACCA 60.179 50.000 0.00 0.00 38.07 3.25
3754 4408 0.242017 CAAGGCAGCAGCTTTACCAC 59.758 55.000 0.00 0.00 38.07 4.16
3755 4409 0.111253 AAGGCAGCAGCTTTACCACT 59.889 50.000 0.00 0.00 38.40 4.00
3756 4410 0.607489 AGGCAGCAGCTTTACCACTG 60.607 55.000 0.00 0.00 41.70 3.66
3760 4414 2.870372 CAGCTTTACCACTGCGCC 59.130 61.111 4.18 0.00 0.00 6.53
3761 4415 1.965930 CAGCTTTACCACTGCGCCA 60.966 57.895 4.18 0.00 0.00 5.69
3762 4416 1.228124 AGCTTTACCACTGCGCCAA 60.228 52.632 4.18 0.00 0.00 4.52
3763 4417 1.210155 GCTTTACCACTGCGCCAAG 59.790 57.895 4.18 0.00 0.00 3.61
3764 4418 1.875963 CTTTACCACTGCGCCAAGG 59.124 57.895 4.18 6.21 0.00 3.61
3765 4419 2.200170 CTTTACCACTGCGCCAAGGC 62.200 60.000 4.18 0.00 37.85 4.35
3766 4420 2.690653 TTTACCACTGCGCCAAGGCT 62.691 55.000 4.18 0.00 39.32 4.58
3767 4421 3.605749 TACCACTGCGCCAAGGCTC 62.606 63.158 4.18 1.20 39.32 4.70
3782 4436 2.923619 GCTCCCCTTCTAAGCCTCT 58.076 57.895 0.00 0.00 0.00 3.69
3783 4437 2.089600 GCTCCCCTTCTAAGCCTCTA 57.910 55.000 0.00 0.00 0.00 2.43
3784 4438 1.967779 GCTCCCCTTCTAAGCCTCTAG 59.032 57.143 0.00 0.00 0.00 2.43
3785 4439 2.691545 GCTCCCCTTCTAAGCCTCTAGT 60.692 54.545 0.00 0.00 0.00 2.57
3786 4440 3.436761 GCTCCCCTTCTAAGCCTCTAGTA 60.437 52.174 0.00 0.00 0.00 1.82
3787 4441 4.805744 CTCCCCTTCTAAGCCTCTAGTAA 58.194 47.826 0.00 0.00 0.00 2.24
3788 4442 5.209659 CTCCCCTTCTAAGCCTCTAGTAAA 58.790 45.833 0.00 0.00 0.00 2.01
3789 4443 5.209659 TCCCCTTCTAAGCCTCTAGTAAAG 58.790 45.833 0.00 0.00 0.00 1.85
3790 4444 4.345547 CCCCTTCTAAGCCTCTAGTAAAGG 59.654 50.000 0.00 0.00 36.95 3.11
3791 4445 5.209659 CCCTTCTAAGCCTCTAGTAAAGGA 58.790 45.833 0.00 0.00 35.83 3.36
3792 4446 5.661759 CCCTTCTAAGCCTCTAGTAAAGGAA 59.338 44.000 0.00 0.00 35.83 3.36
3793 4447 6.156429 CCCTTCTAAGCCTCTAGTAAAGGAAA 59.844 42.308 0.00 0.00 35.83 3.13
3794 4448 7.311109 CCCTTCTAAGCCTCTAGTAAAGGAAAA 60.311 40.741 0.00 0.00 35.83 2.29
3795 4449 7.766738 CCTTCTAAGCCTCTAGTAAAGGAAAAG 59.233 40.741 0.00 0.00 35.83 2.27
3796 4450 8.431910 TTCTAAGCCTCTAGTAAAGGAAAAGA 57.568 34.615 0.00 0.00 35.83 2.52
3883 4537 9.967451 TCATGGTCTATTTAAATGAGTAAACCA 57.033 29.630 11.05 13.39 0.00 3.67
3885 4539 8.259049 TGGTCTATTTAAATGAGTAAACCACG 57.741 34.615 11.05 0.00 0.00 4.94
3886 4540 7.148373 TGGTCTATTTAAATGAGTAAACCACGC 60.148 37.037 11.05 0.00 0.00 5.34
3887 4541 7.065443 GGTCTATTTAAATGAGTAAACCACGCT 59.935 37.037 11.05 0.00 0.00 5.07
3888 4542 7.903431 GTCTATTTAAATGAGTAAACCACGCTG 59.097 37.037 11.05 0.00 0.00 5.18
3889 4543 2.989422 AAATGAGTAAACCACGCTGC 57.011 45.000 0.00 0.00 0.00 5.25
3890 4544 1.890876 AATGAGTAAACCACGCTGCA 58.109 45.000 0.00 0.00 0.00 4.41
3891 4545 2.113860 ATGAGTAAACCACGCTGCAT 57.886 45.000 0.00 0.00 0.00 3.96
3892 4546 2.753055 TGAGTAAACCACGCTGCATA 57.247 45.000 0.00 0.00 0.00 3.14
3893 4547 3.046968 TGAGTAAACCACGCTGCATAA 57.953 42.857 0.00 0.00 0.00 1.90
3894 4548 3.403968 TGAGTAAACCACGCTGCATAAA 58.596 40.909 0.00 0.00 0.00 1.40
3895 4549 3.815962 TGAGTAAACCACGCTGCATAAAA 59.184 39.130 0.00 0.00 0.00 1.52
3896 4550 4.276183 TGAGTAAACCACGCTGCATAAAAA 59.724 37.500 0.00 0.00 0.00 1.94
3897 4551 4.794169 AGTAAACCACGCTGCATAAAAAG 58.206 39.130 0.00 0.00 0.00 2.27
4102 4756 9.006839 CGACTATTTTTAACTTTAAACCCCTCT 57.993 33.333 0.00 0.00 32.77 3.69
4246 4900 9.630098 AAGTAACTTCAATGCACATTTTATGAG 57.370 29.630 0.00 0.00 0.00 2.90
4420 5102 6.061441 CCACAAGCATCCCATAAAGTACATA 58.939 40.000 0.00 0.00 0.00 2.29
4479 5161 8.743085 ACACTCCATACTTAGTCGATACTTTA 57.257 34.615 0.00 0.00 37.15 1.85
4481 5163 8.838365 CACTCCATACTTAGTCGATACTTTACT 58.162 37.037 0.00 0.00 37.15 2.24
4609 5291 4.560035 GCATTTTCACACATGGATCTTTCG 59.440 41.667 0.00 0.00 0.00 3.46
4715 5397 2.645730 TTTGGTGCACCGCATTATTC 57.354 45.000 30.07 4.16 41.91 1.75
4727 5409 7.442666 TGCACCGCATTATTCACATACTTATAA 59.557 33.333 0.00 0.00 31.71 0.98
4753 5435 1.890876 TCCGGTTGTCATTCTGGTTG 58.109 50.000 0.00 0.00 0.00 3.77
4953 5636 2.268762 TCAAACTAGTGTGCATGCCA 57.731 45.000 16.68 10.08 0.00 4.92
4986 5669 3.496331 GAGCAAGAGGTCTCTATAGGCT 58.504 50.000 12.72 12.72 39.39 4.58
5008 5691 6.039717 GGCTCATATTTGCAAAGGATTACAGA 59.960 38.462 18.19 6.26 0.00 3.41
5060 5743 3.773418 TTACAACGTGGAATCTCCCAA 57.227 42.857 0.00 0.00 38.06 4.12
5173 5856 4.811969 TGGCTAGAATTTCGTCTGGTAA 57.188 40.909 0.00 0.00 0.00 2.85
5185 5868 1.068741 GTCTGGTAAGGGATGTAGGCG 59.931 57.143 0.00 0.00 0.00 5.52
5280 5963 2.955342 AGGCCATTTGGTTTGCATTT 57.045 40.000 5.01 0.00 37.57 2.32
5414 6106 9.223291 CCATATCCCTTATCTCCTAGAATGAAT 57.777 37.037 0.00 0.00 0.00 2.57
5426 6118 8.035394 TCTCCTAGAATGAATGTTGAACAGTAC 58.965 37.037 3.74 0.00 0.00 2.73
5477 6169 6.373759 TCTGAACTTAGCTCATGGTAGGATA 58.626 40.000 0.00 0.00 0.00 2.59
5478 6170 6.839134 TCTGAACTTAGCTCATGGTAGGATAA 59.161 38.462 0.00 0.00 0.00 1.75
5479 6171 7.014711 TCTGAACTTAGCTCATGGTAGGATAAG 59.985 40.741 0.00 3.13 35.77 1.73
5480 6172 6.042093 TGAACTTAGCTCATGGTAGGATAAGG 59.958 42.308 0.00 0.00 34.51 2.69
5481 6173 5.716979 ACTTAGCTCATGGTAGGATAAGGA 58.283 41.667 0.00 0.00 34.51 3.36
5482 6174 6.143915 ACTTAGCTCATGGTAGGATAAGGAA 58.856 40.000 0.00 0.00 34.51 3.36
5483 6175 6.615726 ACTTAGCTCATGGTAGGATAAGGAAA 59.384 38.462 0.00 0.00 34.51 3.13
5484 6176 5.559148 AGCTCATGGTAGGATAAGGAAAG 57.441 43.478 0.00 0.00 0.00 2.62
5485 6177 5.219739 AGCTCATGGTAGGATAAGGAAAGA 58.780 41.667 0.00 0.00 0.00 2.52
5486 6178 5.306678 AGCTCATGGTAGGATAAGGAAAGAG 59.693 44.000 0.00 0.00 0.00 2.85
5487 6179 5.305644 GCTCATGGTAGGATAAGGAAAGAGA 59.694 44.000 0.00 0.00 0.00 3.10
5488 6180 6.183361 GCTCATGGTAGGATAAGGAAAGAGAA 60.183 42.308 0.00 0.00 0.00 2.87
5489 6181 7.366847 TCATGGTAGGATAAGGAAAGAGAAG 57.633 40.000 0.00 0.00 0.00 2.85
5490 6182 6.903534 TCATGGTAGGATAAGGAAAGAGAAGT 59.096 38.462 0.00 0.00 0.00 3.01
5491 6183 7.403231 TCATGGTAGGATAAGGAAAGAGAAGTT 59.597 37.037 0.00 0.00 0.00 2.66
5492 6184 7.569599 TGGTAGGATAAGGAAAGAGAAGTTT 57.430 36.000 0.00 0.00 0.00 2.66
5493 6185 7.985589 TGGTAGGATAAGGAAAGAGAAGTTTT 58.014 34.615 0.00 0.00 0.00 2.43
5494 6186 8.445588 TGGTAGGATAAGGAAAGAGAAGTTTTT 58.554 33.333 0.00 0.00 0.00 1.94
5525 6217 6.166982 ACGGAATAAGGAAAGAGAAGTTGAG 58.833 40.000 0.00 0.00 0.00 3.02
5554 6246 4.684703 AGTAGTGCAGTTTCATGTAACGAC 59.315 41.667 9.25 7.87 33.26 4.34
5610 6302 1.272212 TCGAAGCACACACTAGCATGA 59.728 47.619 0.00 0.00 0.00 3.07
5627 6319 3.181512 GCATGAAGAGAGTGTTTAGCTGC 60.182 47.826 0.00 0.00 0.00 5.25
5693 6386 5.450965 CCCTCCATTCACAAATACAAGATGC 60.451 44.000 0.00 0.00 0.00 3.91
5713 6406 8.716674 AGATGCTTTGGATATTTCAATATGGT 57.283 30.769 0.00 0.00 31.96 3.55
5754 6447 6.561737 TGAGTGAACAAACACACTAAAACA 57.438 33.333 0.00 0.00 45.54 2.83
5835 6529 5.452636 GGAGGGAGTAGCTATCAAGTTTGAG 60.453 48.000 0.00 0.00 41.08 3.02
6170 6877 6.381420 CCCAGTAAGTCTCAAAATCTCTAGGA 59.619 42.308 0.00 0.00 0.00 2.94
6207 6914 2.096657 GGAAAAGAGAGCGAAGATTGCC 59.903 50.000 0.00 0.00 0.00 4.52
6378 7087 3.786516 TTTGTCCATGCATGCACATAG 57.213 42.857 23.61 13.11 0.00 2.23
6379 7088 1.682740 TGTCCATGCATGCACATAGG 58.317 50.000 25.37 21.38 0.00 2.57
6450 7159 7.360361 CAAAGTAATGCCGTCTTTAGAAACTT 58.640 34.615 0.00 0.00 31.46 2.66
6458 7167 6.148811 TGCCGTCTTTAGAAACTTATGAAAGG 59.851 38.462 0.00 0.00 37.01 3.11
6494 7203 0.179062 TGGTGCATTTTGGTTGTGGC 60.179 50.000 0.00 0.00 0.00 5.01
6594 7303 9.860650 ATTTAGCATACCAGGTGTGAATATAAA 57.139 29.630 20.17 16.11 0.00 1.40
6632 7341 0.387878 AGCTTCTCTGTCGCAGTTCG 60.388 55.000 6.72 0.00 40.15 3.95
6740 7450 2.032030 ACGCACACTGTTTCAAGTATGC 60.032 45.455 0.00 0.00 45.18 3.14
6750 7460 1.378911 CAAGTATGCCCTGCCTGCA 60.379 57.895 0.00 0.00 43.97 4.41
6762 7472 3.058160 CCTGCAGCCTGGGTTTCG 61.058 66.667 8.66 0.00 0.00 3.46
6789 7501 0.179103 GCCATGCCTGGTAAATGCAC 60.179 55.000 9.95 0.00 45.10 4.57
6857 7569 1.333169 CGCACCGCTGTTGCTTATATG 60.333 52.381 0.00 0.00 36.97 1.78
6860 7572 2.545526 CACCGCTGTTGCTTATATGGAG 59.454 50.000 0.00 0.00 36.97 3.86
6880 7602 5.114081 GGAGTAGTTTAAAATCTGCGCCTA 58.886 41.667 4.18 0.00 34.67 3.93
7079 7801 6.767524 TTTCTGTGAAACCTTTAAAGCTCA 57.232 33.333 9.86 8.83 34.36 4.26
7080 7802 6.767524 TTCTGTGAAACCTTTAAAGCTCAA 57.232 33.333 9.86 3.50 34.36 3.02
7081 7803 6.767524 TCTGTGAAACCTTTAAAGCTCAAA 57.232 33.333 9.86 6.35 34.36 2.69
7082 7804 6.560711 TCTGTGAAACCTTTAAAGCTCAAAC 58.439 36.000 9.86 5.81 34.36 2.93
7083 7805 6.377146 TCTGTGAAACCTTTAAAGCTCAAACT 59.623 34.615 9.86 0.00 34.36 2.66
7084 7806 7.554835 TCTGTGAAACCTTTAAAGCTCAAACTA 59.445 33.333 9.86 0.78 34.36 2.24
7085 7807 8.057536 TGTGAAACCTTTAAAGCTCAAACTAA 57.942 30.769 9.86 0.00 34.36 2.24
7088 7810 9.361315 TGAAACCTTTAAAGCTCAAACTAAAAC 57.639 29.630 9.86 0.00 0.00 2.43
7089 7811 8.712285 AAACCTTTAAAGCTCAAACTAAAACC 57.288 30.769 9.86 0.00 0.00 3.27
7091 7813 7.489160 ACCTTTAAAGCTCAAACTAAAACCAG 58.511 34.615 9.86 0.00 0.00 4.00
7092 7814 6.923508 CCTTTAAAGCTCAAACTAAAACCAGG 59.076 38.462 9.86 0.00 0.00 4.45
7094 7816 5.932619 AAAGCTCAAACTAAAACCAGGTT 57.067 34.783 0.00 0.00 0.00 3.50
7096 7818 6.635030 AAGCTCAAACTAAAACCAGGTTAG 57.365 37.500 4.87 2.61 35.16 2.34
7097 7819 5.691896 AGCTCAAACTAAAACCAGGTTAGT 58.308 37.500 4.87 3.34 42.30 2.24
7112 7847 2.938451 GGTTAGTTATTTCCGAACGGGG 59.062 50.000 13.29 0.00 36.01 5.73
7113 7848 3.369366 GGTTAGTTATTTCCGAACGGGGA 60.369 47.826 13.29 2.99 36.01 4.81
7115 7850 2.181975 AGTTATTTCCGAACGGGGAGA 58.818 47.619 13.29 0.00 37.40 3.71
7121 7856 2.783288 CCGAACGGGGAGAGTAGCC 61.783 68.421 5.25 0.00 0.00 3.93
7141 7876 6.949352 AGCCCATAATTTACTCATCACTTG 57.051 37.500 0.00 0.00 0.00 3.16
7158 7893 8.653338 TCATCACTTGTCTAAAATTAACGCTAC 58.347 33.333 0.00 0.00 0.00 3.58
7170 7905 8.959734 AAAATTAACGCTACATTTGTACTTCC 57.040 30.769 0.00 0.00 0.00 3.46
7171 7906 7.916914 AATTAACGCTACATTTGTACTTCCT 57.083 32.000 0.00 0.00 0.00 3.36
7172 7907 6.956299 TTAACGCTACATTTGTACTTCCTC 57.044 37.500 0.00 0.00 0.00 3.71
7174 7909 2.858344 CGCTACATTTGTACTTCCTCCG 59.142 50.000 0.00 0.00 0.00 4.63
7175 7910 3.675228 CGCTACATTTGTACTTCCTCCGT 60.675 47.826 0.00 0.00 0.00 4.69
7176 7911 4.251268 GCTACATTTGTACTTCCTCCGTT 58.749 43.478 0.00 0.00 0.00 4.44
7177 7912 4.329256 GCTACATTTGTACTTCCTCCGTTC 59.671 45.833 0.00 0.00 0.00 3.95
7178 7913 3.671716 ACATTTGTACTTCCTCCGTTCC 58.328 45.455 0.00 0.00 0.00 3.62
7179 7914 3.326880 ACATTTGTACTTCCTCCGTTCCT 59.673 43.478 0.00 0.00 0.00 3.36
7180 7915 4.529377 ACATTTGTACTTCCTCCGTTCCTA 59.471 41.667 0.00 0.00 0.00 2.94
7181 7916 5.012354 ACATTTGTACTTCCTCCGTTCCTAA 59.988 40.000 0.00 0.00 0.00 2.69
7182 7917 5.549742 TTTGTACTTCCTCCGTTCCTAAA 57.450 39.130 0.00 0.00 0.00 1.85
7183 7918 5.750352 TTGTACTTCCTCCGTTCCTAAAT 57.250 39.130 0.00 0.00 0.00 1.40
7184 7919 6.855763 TTGTACTTCCTCCGTTCCTAAATA 57.144 37.500 0.00 0.00 0.00 1.40
7185 7920 7.427989 TTGTACTTCCTCCGTTCCTAAATAT 57.572 36.000 0.00 0.00 0.00 1.28
7186 7921 8.537728 TTGTACTTCCTCCGTTCCTAAATATA 57.462 34.615 0.00 0.00 0.00 0.86
7187 7922 8.537728 TGTACTTCCTCCGTTCCTAAATATAA 57.462 34.615 0.00 0.00 0.00 0.98
7188 7923 8.980596 TGTACTTCCTCCGTTCCTAAATATAAA 58.019 33.333 0.00 0.00 0.00 1.40
7189 7924 9.993454 GTACTTCCTCCGTTCCTAAATATAAAT 57.007 33.333 0.00 0.00 0.00 1.40
7191 7926 8.935741 ACTTCCTCCGTTCCTAAATATAAATCT 58.064 33.333 0.00 0.00 0.00 2.40
7192 7927 9.780186 CTTCCTCCGTTCCTAAATATAAATCTT 57.220 33.333 0.00 0.00 0.00 2.40
7223 7958 8.522830 ACATTTCAAAAGGACTACAACATATGG 58.477 33.333 7.80 0.00 0.00 2.74
7224 7959 8.739039 CATTTCAAAAGGACTACAACATATGGA 58.261 33.333 7.80 0.00 0.00 3.41
7225 7960 8.877864 TTTCAAAAGGACTACAACATATGGAT 57.122 30.769 7.80 0.00 0.00 3.41
7226 7961 7.864108 TCAAAAGGACTACAACATATGGATG 57.136 36.000 7.80 8.32 39.16 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.081198 ACCACAACCAAAAGCAATCAAGAA 60.081 37.500 0.00 0.00 0.00 2.52
60 61 3.070878 TGAATGTACTCACAAGCTCACCA 59.929 43.478 0.00 0.00 38.42 4.17
61 62 3.664107 TGAATGTACTCACAAGCTCACC 58.336 45.455 0.00 0.00 38.42 4.02
95 96 3.004862 CTGCAATCTAGCATGACACACA 58.995 45.455 0.00 0.00 44.68 3.72
96 97 2.353889 CCTGCAATCTAGCATGACACAC 59.646 50.000 0.00 0.00 44.68 3.82
97 98 2.026915 ACCTGCAATCTAGCATGACACA 60.027 45.455 0.00 0.00 44.68 3.72
138 139 0.101399 CAGACTTGGGATCCTCGACG 59.899 60.000 12.58 0.00 0.00 5.12
168 169 1.152247 AGACTCTGGCTGGGACACA 60.152 57.895 0.00 0.00 0.00 3.72
230 231 9.640963 AATAACTCATAGTAGCGGAATAACATC 57.359 33.333 0.00 0.00 0.00 3.06
244 245 5.243954 TGCTAGCATCGGAATAACTCATAGT 59.756 40.000 14.93 0.00 0.00 2.12
247 248 4.607293 TGCTAGCATCGGAATAACTCAT 57.393 40.909 14.93 0.00 0.00 2.90
248 249 4.607293 ATGCTAGCATCGGAATAACTCA 57.393 40.909 24.67 0.00 29.42 3.41
275 276 0.250467 ATGCTATGCCCGCTAAGGTG 60.250 55.000 0.00 0.00 38.74 4.00
293 294 0.944386 GTTTACATCGGCATGGCGAT 59.056 50.000 41.34 41.34 33.82 4.58
299 300 7.040686 GGATATTACAAAGGTTTACATCGGCAT 60.041 37.037 0.00 0.00 0.00 4.40
363 364 2.627699 ACACCACTTGGCATAAAACAGG 59.372 45.455 0.00 0.00 39.32 4.00
379 380 6.751157 TCAAGTCTTCTAAAATACGACACCA 58.249 36.000 0.00 0.00 0.00 4.17
380 381 7.760340 AGATCAAGTCTTCTAAAATACGACACC 59.240 37.037 0.00 0.00 31.47 4.16
391 392 4.161189 CAGCCCAGAGATCAAGTCTTCTAA 59.839 45.833 0.00 0.00 37.29 2.10
392 393 3.703556 CAGCCCAGAGATCAAGTCTTCTA 59.296 47.826 0.00 0.00 37.29 2.10
420 421 4.016479 ACTCAGAGGAACTGGAATACCCTA 60.016 45.833 1.53 0.00 45.76 3.53
426 427 1.827969 CCGACTCAGAGGAACTGGAAT 59.172 52.381 1.53 0.00 45.76 3.01
443 444 3.948719 GGAAGTGTGGCACCCCGA 61.949 66.667 16.26 0.00 34.49 5.14
526 527 1.350019 CTCTGATATCTGCCATGGCCA 59.650 52.381 33.44 20.62 41.09 5.36
536 537 8.560124 AATCTACCTTTCAACCTCTGATATCT 57.440 34.615 3.98 0.00 32.78 1.98
607 643 8.641499 TCTTTGCTCGTTATTTTTGAATTGTT 57.359 26.923 0.00 0.00 0.00 2.83
619 655 2.607187 CACCGACTCTTTGCTCGTTAT 58.393 47.619 0.00 0.00 0.00 1.89
637 673 0.302890 CGCTCTGATTTCATCGCCAC 59.697 55.000 0.00 0.00 0.00 5.01
644 680 1.005037 ACGTGCCGCTCTGATTTCA 60.005 52.632 0.00 0.00 0.00 2.69
648 684 4.074526 AGCACGTGCCGCTCTGAT 62.075 61.111 35.51 13.05 43.38 2.90
660 710 3.299050 TGGTACTTTCACCAGCACG 57.701 52.632 0.00 0.00 43.76 5.34
781 831 1.080093 GTCGTGGATGGACGCTCAA 60.080 57.895 0.00 0.00 39.27 3.02
834 884 1.891150 TGGGAGAACAAGGACTCGTAC 59.109 52.381 0.00 0.00 34.40 3.67
849 899 2.035632 AGAAAGCCGAGAGTATGGGAG 58.964 52.381 0.00 0.00 0.00 4.30
850 900 2.160721 AGAAAGCCGAGAGTATGGGA 57.839 50.000 0.00 0.00 0.00 4.37
851 901 2.483889 GGAAGAAAGCCGAGAGTATGGG 60.484 54.545 0.00 0.00 0.00 4.00
854 904 2.696187 GGAGGAAGAAAGCCGAGAGTAT 59.304 50.000 0.00 0.00 0.00 2.12
855 905 2.100989 GGAGGAAGAAAGCCGAGAGTA 58.899 52.381 0.00 0.00 0.00 2.59
856 906 0.899019 GGAGGAAGAAAGCCGAGAGT 59.101 55.000 0.00 0.00 0.00 3.24
858 908 1.187087 GAGGAGGAAGAAAGCCGAGA 58.813 55.000 0.00 0.00 0.00 4.04
859 909 1.136110 GAGAGGAGGAAGAAAGCCGAG 59.864 57.143 0.00 0.00 0.00 4.63
1010 1062 1.035139 CTGTTCCACCAGCTTTGCTT 58.965 50.000 0.00 0.00 36.40 3.91
1114 1166 1.054406 TCAAGAATAGGGAGGCCGGG 61.054 60.000 2.18 0.00 0.00 5.73
1151 1203 0.174389 AAGAGCGTCGCATCAGATGT 59.826 50.000 21.09 0.00 0.00 3.06
1158 1210 2.483877 TGAATTTTGAAGAGCGTCGCAT 59.516 40.909 21.09 4.35 0.00 4.73
1251 1303 2.093500 ACATGAGCTGCAATCTACCGAA 60.093 45.455 0.00 0.00 0.00 4.30
1252 1304 1.482182 ACATGAGCTGCAATCTACCGA 59.518 47.619 0.00 0.00 0.00 4.69
1307 1361 2.223900 CCACGAGCTATTCAGATCAGCA 60.224 50.000 4.95 0.00 37.01 4.41
1317 1371 3.255642 ACAAAATGCAACCACGAGCTATT 59.744 39.130 0.00 0.00 0.00 1.73
1338 1392 3.304458 CCGGCAAGAACTAACCAAGAAAC 60.304 47.826 0.00 0.00 0.00 2.78
1392 1446 9.651913 AACCATATCACACAATTTCCAAATAAC 57.348 29.630 0.00 0.00 0.00 1.89
1401 1455 7.557358 TCTGCTCATAACCATATCACACAATTT 59.443 33.333 0.00 0.00 0.00 1.82
1477 1531 0.392461 TATGCCTCCAACTGAACGCC 60.392 55.000 0.00 0.00 0.00 5.68
1576 1764 2.485582 TCGGAGAGCTTCGCTTCG 59.514 61.111 0.00 0.00 39.88 3.79
1592 1780 6.256757 GTGTTGCTGTAAATACTCCATCTCTC 59.743 42.308 0.00 0.00 0.00 3.20
1594 1782 6.036517 CAGTGTTGCTGTAAATACTCCATCTC 59.963 42.308 0.00 0.00 40.27 2.75
1655 1843 2.159114 GGCTCAGCAACAGAAAACCAAA 60.159 45.455 0.00 0.00 0.00 3.28
1746 1934 4.928601 TCTCCGACAAGTATTTCCATACG 58.071 43.478 0.00 0.00 40.42 3.06
1750 1938 4.941263 CCATTTCTCCGACAAGTATTTCCA 59.059 41.667 0.00 0.00 0.00 3.53
1804 1992 7.068226 TGTCGGAGAAATTGATGTATCTAGACA 59.932 37.037 0.00 8.24 39.69 3.41
1825 2013 4.497674 CCTCCGTCTAGAAATACTTGTCGG 60.498 50.000 0.00 0.00 46.52 4.79
1827 2015 4.643784 TCCCTCCGTCTAGAAATACTTGTC 59.356 45.833 0.00 0.00 0.00 3.18
1839 2027 8.800332 GTTTTACTCATATAATCCCTCCGTCTA 58.200 37.037 0.00 0.00 0.00 2.59
1840 2028 7.509659 AGTTTTACTCATATAATCCCTCCGTCT 59.490 37.037 0.00 0.00 0.00 4.18
1874 2062 1.321474 CAGGTGTGTTTGATGCAGGT 58.679 50.000 0.00 0.00 0.00 4.00
1921 2124 2.224314 GCAGCCAAGTGAGAACAACTAC 59.776 50.000 0.00 0.00 0.00 2.73
2024 2227 7.934120 AGTTAGACTTGAGAAAACTTAGCATGT 59.066 33.333 0.00 0.00 0.00 3.21
2141 2602 6.291377 TCTCTGTACACTTCAAGCAAAAGAT 58.709 36.000 0.00 0.00 0.00 2.40
2182 2643 3.432252 GCAGTATGTTACTTGACGCAGTT 59.568 43.478 0.00 0.00 39.53 3.16
2221 2682 2.139323 ACCTGAGATGGTGTACGCTA 57.861 50.000 6.35 0.00 39.17 4.26
2281 2742 2.158682 AGTGTGGTGTTACAGCCATTCA 60.159 45.455 12.17 3.85 37.09 2.57
2301 2762 6.071051 AGCAGAGGGTTTCTACTTTTAGAGAG 60.071 42.308 0.00 0.00 35.67 3.20
2415 2877 0.107165 AAGGTAGCCGCCCAAATCTC 60.107 55.000 0.00 0.00 0.00 2.75
2426 2888 3.097614 TGAGTCCTACAGAAAGGTAGCC 58.902 50.000 0.00 0.00 39.52 3.93
2427 2889 3.764972 AGTGAGTCCTACAGAAAGGTAGC 59.235 47.826 0.00 0.00 39.52 3.58
2438 2900 3.195825 ACAGTGGCATAAGTGAGTCCTAC 59.804 47.826 0.00 0.00 0.00 3.18
2473 2935 9.418045 GTAAGCAAGCAATAAAGGAATAAACAA 57.582 29.630 0.00 0.00 0.00 2.83
2569 3031 8.985805 CCTCCGTAAAGAAATATAATAGCGTTT 58.014 33.333 0.00 0.00 0.00 3.60
2570 3032 7.601508 CCCTCCGTAAAGAAATATAATAGCGTT 59.398 37.037 0.00 0.00 0.00 4.84
2571 3033 7.039504 TCCCTCCGTAAAGAAATATAATAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
2572 3034 7.318141 TCCCTCCGTAAAGAAATATAATAGCG 58.682 38.462 0.00 0.00 0.00 4.26
2573 3035 8.312564 ACTCCCTCCGTAAAGAAATATAATAGC 58.687 37.037 0.00 0.00 0.00 2.97
2576 3038 9.377238 AGTACTCCCTCCGTAAAGAAATATAAT 57.623 33.333 0.00 0.00 0.00 1.28
2577 3039 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
2578 3040 8.773033 AAGTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
2579 3041 7.469732 CGAAGTACTCCCTCCGTAAAGAAATAT 60.470 40.741 0.00 0.00 0.00 1.28
2580 3042 6.183360 CGAAGTACTCCCTCCGTAAAGAAATA 60.183 42.308 0.00 0.00 0.00 1.40
2581 3043 5.393896 CGAAGTACTCCCTCCGTAAAGAAAT 60.394 44.000 0.00 0.00 0.00 2.17
2582 3044 4.082571 CGAAGTACTCCCTCCGTAAAGAAA 60.083 45.833 0.00 0.00 0.00 2.52
2583 3045 3.441572 CGAAGTACTCCCTCCGTAAAGAA 59.558 47.826 0.00 0.00 0.00 2.52
2584 3046 3.012518 CGAAGTACTCCCTCCGTAAAGA 58.987 50.000 0.00 0.00 0.00 2.52
2585 3047 2.479219 GCGAAGTACTCCCTCCGTAAAG 60.479 54.545 0.00 0.00 0.00 1.85
2586 3048 1.474077 GCGAAGTACTCCCTCCGTAAA 59.526 52.381 0.00 0.00 0.00 2.01
2587 3049 1.098050 GCGAAGTACTCCCTCCGTAA 58.902 55.000 0.00 0.00 0.00 3.18
2588 3050 0.254178 AGCGAAGTACTCCCTCCGTA 59.746 55.000 0.00 0.00 0.00 4.02
2589 3051 0.611340 AAGCGAAGTACTCCCTCCGT 60.611 55.000 0.00 0.00 0.00 4.69
2590 3052 0.179134 CAAGCGAAGTACTCCCTCCG 60.179 60.000 0.00 0.00 0.00 4.63
2591 3053 0.460459 GCAAGCGAAGTACTCCCTCC 60.460 60.000 0.00 0.00 0.00 4.30
2592 3054 0.802607 CGCAAGCGAAGTACTCCCTC 60.803 60.000 9.11 0.00 42.83 4.30
2593 3055 1.215647 CGCAAGCGAAGTACTCCCT 59.784 57.895 9.11 0.00 42.83 4.20
2594 3056 0.669625 AACGCAAGCGAAGTACTCCC 60.670 55.000 22.30 0.00 42.83 4.30
2595 3057 0.714439 GAACGCAAGCGAAGTACTCC 59.286 55.000 22.30 0.00 42.83 3.85
2596 3058 1.649662 GAGAACGCAAGCGAAGTACTC 59.350 52.381 22.30 15.58 42.83 2.59
2597 3059 1.669211 GGAGAACGCAAGCGAAGTACT 60.669 52.381 22.30 11.45 42.83 2.73
2598 3060 0.714439 GGAGAACGCAAGCGAAGTAC 59.286 55.000 22.30 7.94 42.83 2.73
2599 3061 0.315886 TGGAGAACGCAAGCGAAGTA 59.684 50.000 22.30 0.00 42.83 2.24
2600 3062 1.069090 TGGAGAACGCAAGCGAAGT 59.931 52.632 22.30 5.62 42.83 3.01
2601 3063 0.946221 AGTGGAGAACGCAAGCGAAG 60.946 55.000 22.30 0.00 42.83 3.79
2602 3064 0.531974 AAGTGGAGAACGCAAGCGAA 60.532 50.000 22.30 0.00 42.83 4.70
2603 3065 0.944311 GAAGTGGAGAACGCAAGCGA 60.944 55.000 22.30 0.00 42.83 4.93
2604 3066 0.946221 AGAAGTGGAGAACGCAAGCG 60.946 55.000 13.50 13.50 46.03 4.68
2653 3115 7.555965 AGTCAGATTTACAAAAGCAAAAAGGT 58.444 30.769 0.00 0.00 0.00 3.50
2680 3142 2.291282 ACCTGCCGGTCCAAAATATGAA 60.291 45.455 1.90 0.00 40.27 2.57
2866 3377 6.471233 AGTATGCACTATGTGATGTGTACT 57.529 37.500 1.52 0.00 35.23 2.73
2898 3409 0.800012 GCGACGACTTATTTTGGGCA 59.200 50.000 0.00 0.00 0.00 5.36
2916 3427 2.027192 TCACATTCCTGGTAGGTCAAGC 60.027 50.000 0.00 0.00 36.53 4.01
2926 3437 6.830912 TCCTAAATCTGTATCACATTCCTGG 58.169 40.000 0.00 0.00 0.00 4.45
2950 3462 8.102047 TGCATGGAAAGAATTGGATTAAATGTT 58.898 29.630 0.00 0.00 0.00 2.71
2973 3485 2.949177 AGGTGTTGTTATGTCCTGCA 57.051 45.000 0.00 0.00 0.00 4.41
2987 3499 6.603997 TGGTTATCAAACAGTACAAAAGGTGT 59.396 34.615 0.00 0.00 39.68 4.16
3016 3528 6.736655 TGACCCCTCTAAATTAAACTCCCTAA 59.263 38.462 0.00 0.00 0.00 2.69
3022 3547 8.832735 TGACTTATGACCCCTCTAAATTAAACT 58.167 33.333 0.00 0.00 0.00 2.66
3058 3583 4.536489 ACCCTACTTATGAGCCTTTCACTT 59.464 41.667 0.00 0.00 38.99 3.16
3075 3600 4.080526 TGGCTTCTCCAGATTAAACCCTAC 60.081 45.833 0.00 0.00 40.72 3.18
3170 3695 5.826737 TCCTCTTCCTTCTAATAGGTGTACG 59.173 44.000 0.00 0.00 36.63 3.67
3175 3700 6.206042 ACATGTCCTCTTCCTTCTAATAGGT 58.794 40.000 0.00 0.00 36.63 3.08
3211 3736 7.096551 GCCAAACAAAACATATTATCACAGGT 58.903 34.615 0.00 0.00 0.00 4.00
3296 3821 5.578005 TCTTACATAGAAAGGACGACCAG 57.422 43.478 6.71 0.00 38.94 4.00
3298 3823 5.963594 ACTTCTTACATAGAAAGGACGACC 58.036 41.667 0.00 0.00 42.19 4.79
3301 3826 5.063564 GGCAACTTCTTACATAGAAAGGACG 59.936 44.000 0.00 0.00 42.19 4.79
3386 3911 3.000724 GCTAACTTGCGTTATGCTCAGAG 59.999 47.826 0.00 0.00 46.63 3.35
3440 3965 7.154656 CAGTATATAGCTGACTTTACATGGCA 58.845 38.462 0.00 0.00 36.12 4.92
3459 3984 4.469586 TGGGACTCACATTCTTGCAGTATA 59.530 41.667 0.00 0.00 0.00 1.47
3559 4090 6.541641 AGGCTTCTTTCATGCTAATAGAACAG 59.458 38.462 0.00 0.00 0.00 3.16
3566 4097 6.245890 ACTAGAGGCTTCTTTCATGCTAAT 57.754 37.500 2.68 0.00 34.79 1.73
3598 4252 4.794648 TACATGCACCGGGCTGCC 62.795 66.667 11.05 11.05 45.15 4.85
3599 4253 3.204827 CTACATGCACCGGGCTGC 61.205 66.667 6.32 8.50 45.15 5.25
3600 4254 3.204827 GCTACATGCACCGGGCTG 61.205 66.667 6.32 9.21 45.15 4.85
3602 4256 2.897350 GAGCTACATGCACCGGGC 60.897 66.667 6.32 7.25 45.94 6.13
3603 4257 2.203070 GGAGCTACATGCACCGGG 60.203 66.667 6.32 0.00 42.21 5.73
3629 4283 3.400054 GACCCTTCCCCGACCCTG 61.400 72.222 0.00 0.00 0.00 4.45
3630 4284 4.735599 GGACCCTTCCCCGACCCT 62.736 72.222 0.00 0.00 35.57 4.34
3636 4290 3.714001 GTGGTCGGACCCTTCCCC 61.714 72.222 23.81 0.00 38.99 4.81
3637 4291 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3638 4292 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3639 4293 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3640 4294 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3641 4295 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3642 4296 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3643 4297 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3644 4298 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3649 4303 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3650 4304 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3651 4305 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3652 4306 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3653 4307 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3654 4308 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3655 4309 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3656 4310 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3657 4311 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3658 4312 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3659 4313 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3660 4314 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3661 4315 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3662 4316 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3663 4317 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3664 4318 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3665 4319 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3666 4320 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3667 4321 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3668 4322 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3669 4323 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3670 4324 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3671 4325 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3672 4326 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3673 4327 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3674 4328 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3675 4329 5.586643 GCCTCTTACAGAAATGTAGGGAAAG 59.413 44.000 0.00 0.00 0.00 2.62
3676 4330 5.250774 AGCCTCTTACAGAAATGTAGGGAAA 59.749 40.000 0.00 0.00 0.00 3.13
3677 4331 4.783227 AGCCTCTTACAGAAATGTAGGGAA 59.217 41.667 0.00 0.00 0.00 3.97
3678 4332 4.162320 CAGCCTCTTACAGAAATGTAGGGA 59.838 45.833 0.00 0.00 0.00 4.20
3679 4333 4.080863 ACAGCCTCTTACAGAAATGTAGGG 60.081 45.833 0.00 0.66 0.00 3.53
3680 4334 5.091261 ACAGCCTCTTACAGAAATGTAGG 57.909 43.478 0.00 0.00 0.00 3.18
3681 4335 7.173218 TGAAAACAGCCTCTTACAGAAATGTAG 59.827 37.037 0.00 0.00 0.00 2.74
3682 4336 6.995686 TGAAAACAGCCTCTTACAGAAATGTA 59.004 34.615 0.00 0.00 0.00 2.29
3683 4337 5.827797 TGAAAACAGCCTCTTACAGAAATGT 59.172 36.000 0.00 0.00 0.00 2.71
3684 4338 6.317789 TGAAAACAGCCTCTTACAGAAATG 57.682 37.500 0.00 0.00 0.00 2.32
3685 4339 5.474876 CCTGAAAACAGCCTCTTACAGAAAT 59.525 40.000 0.00 0.00 0.00 2.17
3686 4340 4.821805 CCTGAAAACAGCCTCTTACAGAAA 59.178 41.667 0.00 0.00 0.00 2.52
3687 4341 4.102524 TCCTGAAAACAGCCTCTTACAGAA 59.897 41.667 0.00 0.00 0.00 3.02
3688 4342 3.646162 TCCTGAAAACAGCCTCTTACAGA 59.354 43.478 0.00 0.00 0.00 3.41
3689 4343 3.748568 GTCCTGAAAACAGCCTCTTACAG 59.251 47.826 0.00 0.00 0.00 2.74
3690 4344 3.391296 AGTCCTGAAAACAGCCTCTTACA 59.609 43.478 0.00 0.00 0.00 2.41
3691 4345 4.009370 AGTCCTGAAAACAGCCTCTTAC 57.991 45.455 0.00 0.00 0.00 2.34
3692 4346 4.102524 TCAAGTCCTGAAAACAGCCTCTTA 59.897 41.667 0.00 0.00 0.00 2.10
3693 4347 3.117888 TCAAGTCCTGAAAACAGCCTCTT 60.118 43.478 0.00 0.00 0.00 2.85
3694 4348 2.439507 TCAAGTCCTGAAAACAGCCTCT 59.560 45.455 0.00 0.00 0.00 3.69
3695 4349 2.851195 TCAAGTCCTGAAAACAGCCTC 58.149 47.619 0.00 0.00 0.00 4.70
3696 4350 2.952310 GTTCAAGTCCTGAAAACAGCCT 59.048 45.455 0.00 0.00 45.67 4.58
3697 4351 2.034685 GGTTCAAGTCCTGAAAACAGCC 59.965 50.000 0.00 0.00 45.67 4.85
3698 4352 2.034685 GGGTTCAAGTCCTGAAAACAGC 59.965 50.000 0.00 0.00 45.67 4.40
3699 4353 2.290641 CGGGTTCAAGTCCTGAAAACAG 59.709 50.000 0.00 0.00 45.67 3.16
3700 4354 2.294074 CGGGTTCAAGTCCTGAAAACA 58.706 47.619 0.00 0.00 45.67 2.83
3701 4355 2.032924 CACGGGTTCAAGTCCTGAAAAC 59.967 50.000 0.00 0.00 45.67 2.43
3702 4356 2.092861 TCACGGGTTCAAGTCCTGAAAA 60.093 45.455 0.00 0.00 45.67 2.29
3703 4357 1.487142 TCACGGGTTCAAGTCCTGAAA 59.513 47.619 0.00 0.00 45.67 2.69
3704 4358 1.124780 TCACGGGTTCAAGTCCTGAA 58.875 50.000 0.00 0.00 41.93 3.02
3705 4359 0.391597 GTCACGGGTTCAAGTCCTGA 59.608 55.000 0.00 0.00 35.49 3.86
3706 4360 0.602905 GGTCACGGGTTCAAGTCCTG 60.603 60.000 0.00 0.00 37.36 3.86
3707 4361 0.763223 AGGTCACGGGTTCAAGTCCT 60.763 55.000 0.00 0.00 0.00 3.85
3708 4362 0.320508 GAGGTCACGGGTTCAAGTCC 60.321 60.000 0.00 0.00 0.00 3.85
3709 4363 0.391597 TGAGGTCACGGGTTCAAGTC 59.608 55.000 0.00 0.00 0.00 3.01
3710 4364 1.056660 ATGAGGTCACGGGTTCAAGT 58.943 50.000 0.00 0.00 0.00 3.16
3711 4365 1.442769 CATGAGGTCACGGGTTCAAG 58.557 55.000 0.00 0.00 0.00 3.02
3712 4366 0.036164 CCATGAGGTCACGGGTTCAA 59.964 55.000 0.00 0.00 0.00 2.69
3713 4367 1.676968 CCATGAGGTCACGGGTTCA 59.323 57.895 0.00 0.00 0.00 3.18
3714 4368 4.617875 CCATGAGGTCACGGGTTC 57.382 61.111 0.00 0.00 0.00 3.62
3724 4378 1.310933 GCTGCCTTGTGACCATGAGG 61.311 60.000 0.00 0.00 42.21 3.86
3725 4379 0.607217 TGCTGCCTTGTGACCATGAG 60.607 55.000 0.00 0.00 0.00 2.90
3726 4380 0.607217 CTGCTGCCTTGTGACCATGA 60.607 55.000 0.00 0.00 0.00 3.07
3727 4381 1.880894 CTGCTGCCTTGTGACCATG 59.119 57.895 0.00 0.00 0.00 3.66
3728 4382 1.975407 GCTGCTGCCTTGTGACCAT 60.975 57.895 3.85 0.00 0.00 3.55
3729 4383 2.595463 GCTGCTGCCTTGTGACCA 60.595 61.111 3.85 0.00 0.00 4.02
3730 4384 1.458639 AAAGCTGCTGCCTTGTGACC 61.459 55.000 12.44 0.00 40.80 4.02
3731 4385 1.068954 GTAAAGCTGCTGCCTTGTGAC 60.069 52.381 12.44 0.00 40.80 3.67
3732 4386 1.238439 GTAAAGCTGCTGCCTTGTGA 58.762 50.000 12.44 0.00 40.80 3.58
3733 4387 0.242017 GGTAAAGCTGCTGCCTTGTG 59.758 55.000 12.44 0.00 40.80 3.33
3734 4388 0.178992 TGGTAAAGCTGCTGCCTTGT 60.179 50.000 12.44 0.00 40.80 3.16
3735 4389 0.242017 GTGGTAAAGCTGCTGCCTTG 59.758 55.000 12.44 0.00 40.80 3.61
3736 4390 0.111253 AGTGGTAAAGCTGCTGCCTT 59.889 50.000 12.44 8.34 40.80 4.35
3737 4391 0.607489 CAGTGGTAAAGCTGCTGCCT 60.607 55.000 12.44 2.45 40.80 4.75
3738 4392 1.878775 CAGTGGTAAAGCTGCTGCC 59.121 57.895 12.44 7.07 40.80 4.85
3743 4397 1.514678 TTGGCGCAGTGGTAAAGCTG 61.515 55.000 10.83 0.00 35.93 4.24
3744 4398 1.228124 TTGGCGCAGTGGTAAAGCT 60.228 52.632 10.83 0.00 0.00 3.74
3745 4399 1.210155 CTTGGCGCAGTGGTAAAGC 59.790 57.895 10.83 0.00 0.00 3.51
3746 4400 1.875963 CCTTGGCGCAGTGGTAAAG 59.124 57.895 10.83 0.71 0.00 1.85
3747 4401 2.265182 GCCTTGGCGCAGTGGTAAA 61.265 57.895 10.83 0.00 0.00 2.01
3748 4402 2.671619 GCCTTGGCGCAGTGGTAA 60.672 61.111 10.83 0.00 0.00 2.85
3749 4403 3.605749 GAGCCTTGGCGCAGTGGTA 62.606 63.158 10.83 0.00 0.00 3.25
3757 4411 1.910580 TTAGAAGGGGAGCCTTGGCG 61.911 60.000 5.95 0.00 0.00 5.69
3758 4412 0.106967 CTTAGAAGGGGAGCCTTGGC 60.107 60.000 2.97 2.97 0.00 4.52
3759 4413 0.106967 GCTTAGAAGGGGAGCCTTGG 60.107 60.000 0.00 0.00 0.00 3.61
3760 4414 3.485764 GCTTAGAAGGGGAGCCTTG 57.514 57.895 0.00 0.00 0.00 3.61
3764 4418 1.967779 CTAGAGGCTTAGAAGGGGAGC 59.032 57.143 0.00 0.00 35.71 4.70
3765 4419 3.322191 ACTAGAGGCTTAGAAGGGGAG 57.678 52.381 0.00 0.00 0.00 4.30
3766 4420 4.894252 TTACTAGAGGCTTAGAAGGGGA 57.106 45.455 0.00 0.00 0.00 4.81
3767 4421 4.345547 CCTTTACTAGAGGCTTAGAAGGGG 59.654 50.000 0.00 4.62 0.00 4.79
3768 4422 5.209659 TCCTTTACTAGAGGCTTAGAAGGG 58.790 45.833 15.78 12.17 34.17 3.95
3769 4423 6.793505 TTCCTTTACTAGAGGCTTAGAAGG 57.206 41.667 0.00 11.43 34.17 3.46
3770 4424 8.532819 TCTTTTCCTTTACTAGAGGCTTAGAAG 58.467 37.037 0.00 5.19 34.17 2.85
3771 4425 8.431910 TCTTTTCCTTTACTAGAGGCTTAGAA 57.568 34.615 0.00 0.00 34.17 2.10
3772 4426 8.431910 TTCTTTTCCTTTACTAGAGGCTTAGA 57.568 34.615 0.00 0.00 34.17 2.10
3773 4427 7.766738 CCTTCTTTTCCTTTACTAGAGGCTTAG 59.233 40.741 0.00 0.00 34.17 2.18
3774 4428 7.311109 CCCTTCTTTTCCTTTACTAGAGGCTTA 60.311 40.741 0.00 0.00 34.17 3.09
3775 4429 6.477253 CCTTCTTTTCCTTTACTAGAGGCTT 58.523 40.000 0.00 0.00 34.17 4.35
3776 4430 5.045505 CCCTTCTTTTCCTTTACTAGAGGCT 60.046 44.000 0.00 0.00 34.17 4.58
3777 4431 5.186942 CCCTTCTTTTCCTTTACTAGAGGC 58.813 45.833 0.00 0.00 34.17 4.70
3778 4432 6.375830 ACCCTTCTTTTCCTTTACTAGAGG 57.624 41.667 0.00 0.00 35.53 3.69
3779 4433 9.961264 ATTAACCCTTCTTTTCCTTTACTAGAG 57.039 33.333 0.00 0.00 0.00 2.43
3780 4434 9.734984 CATTAACCCTTCTTTTCCTTTACTAGA 57.265 33.333 0.00 0.00 0.00 2.43
3781 4435 8.957466 CCATTAACCCTTCTTTTCCTTTACTAG 58.043 37.037 0.00 0.00 0.00 2.57
3782 4436 8.450434 ACCATTAACCCTTCTTTTCCTTTACTA 58.550 33.333 0.00 0.00 0.00 1.82
3783 4437 7.302948 ACCATTAACCCTTCTTTTCCTTTACT 58.697 34.615 0.00 0.00 0.00 2.24
3784 4438 7.450634 AGACCATTAACCCTTCTTTTCCTTTAC 59.549 37.037 0.00 0.00 0.00 2.01
3785 4439 7.532199 AGACCATTAACCCTTCTTTTCCTTTA 58.468 34.615 0.00 0.00 0.00 1.85
3786 4440 6.382087 AGACCATTAACCCTTCTTTTCCTTT 58.618 36.000 0.00 0.00 0.00 3.11
3787 4441 5.965486 AGACCATTAACCCTTCTTTTCCTT 58.035 37.500 0.00 0.00 0.00 3.36
3788 4442 5.600669 AGACCATTAACCCTTCTTTTCCT 57.399 39.130 0.00 0.00 0.00 3.36
3789 4443 7.396339 ACATAAGACCATTAACCCTTCTTTTCC 59.604 37.037 0.00 0.00 0.00 3.13
3790 4444 8.349568 ACATAAGACCATTAACCCTTCTTTTC 57.650 34.615 0.00 0.00 0.00 2.29
3791 4445 8.721133 AACATAAGACCATTAACCCTTCTTTT 57.279 30.769 0.00 0.00 0.00 2.27
3792 4446 8.721133 AAACATAAGACCATTAACCCTTCTTT 57.279 30.769 0.00 0.00 0.00 2.52
3793 4447 9.990868 ATAAACATAAGACCATTAACCCTTCTT 57.009 29.630 0.00 0.00 0.00 2.52
3794 4448 9.990868 AATAAACATAAGACCATTAACCCTTCT 57.009 29.630 0.00 0.00 0.00 2.85
3857 4511 9.967451 TGGTTTACTCATTTAAATAGACCATGA 57.033 29.630 0.00 0.00 0.00 3.07
3881 4535 0.243365 TGGCTTTTTATGCAGCGTGG 59.757 50.000 0.00 0.00 36.85 4.94
3882 4536 1.339711 GTGGCTTTTTATGCAGCGTG 58.660 50.000 0.00 0.00 36.85 5.34
3883 4537 0.109781 CGTGGCTTTTTATGCAGCGT 60.110 50.000 0.00 0.00 36.85 5.07
3884 4538 1.405469 GCGTGGCTTTTTATGCAGCG 61.405 55.000 0.00 0.00 36.85 5.18
3885 4539 0.109132 AGCGTGGCTTTTTATGCAGC 60.109 50.000 0.00 0.00 33.89 5.25
3886 4540 1.621107 CAGCGTGGCTTTTTATGCAG 58.379 50.000 0.00 0.00 36.40 4.41
3887 4541 0.388391 GCAGCGTGGCTTTTTATGCA 60.388 50.000 0.00 0.00 36.40 3.96
3888 4542 0.388391 TGCAGCGTGGCTTTTTATGC 60.388 50.000 2.31 0.00 36.40 3.14
3889 4543 2.282701 ATGCAGCGTGGCTTTTTATG 57.717 45.000 0.00 0.00 36.40 1.90
3890 4544 4.448537 TTTATGCAGCGTGGCTTTTTAT 57.551 36.364 0.00 0.00 36.40 1.40
3891 4545 3.924918 TTTATGCAGCGTGGCTTTTTA 57.075 38.095 0.00 0.00 36.40 1.52
3892 4546 2.810439 TTTATGCAGCGTGGCTTTTT 57.190 40.000 0.00 0.00 36.40 1.94
3893 4547 2.810439 TTTTATGCAGCGTGGCTTTT 57.190 40.000 0.00 0.00 36.40 2.27
3894 4548 2.676076 CTTTTTATGCAGCGTGGCTTT 58.324 42.857 0.00 0.00 36.40 3.51
3895 4549 1.669795 GCTTTTTATGCAGCGTGGCTT 60.670 47.619 0.00 0.00 36.40 4.35
3896 4550 0.109132 GCTTTTTATGCAGCGTGGCT 60.109 50.000 0.00 0.00 40.77 4.75
3897 4551 0.109132 AGCTTTTTATGCAGCGTGGC 60.109 50.000 0.00 0.00 41.24 5.01
3927 4581 9.285770 CATATTGAACAATTGTCAAGTCATCAG 57.714 33.333 12.39 0.00 32.50 2.90
3981 4635 1.609555 GAGTCGCTACCCTCTATGTGG 59.390 57.143 0.00 0.00 0.00 4.17
4094 4748 1.203174 CCCAATTGTTCCAGAGGGGTT 60.203 52.381 4.43 0.00 38.11 4.11
4102 4756 3.262915 CCTAATTTGGCCCAATTGTTCCA 59.737 43.478 21.94 10.75 0.00 3.53
4198 4852 3.061831 TGCAACGAAAGCACAAACATTTG 59.938 39.130 2.77 2.77 43.62 2.32
4264 4918 1.606224 GGTTAGTGCTTCCCGTTCGAA 60.606 52.381 0.00 0.00 0.00 3.71
4270 4924 0.739813 CGGAAGGTTAGTGCTTCCCG 60.740 60.000 0.00 0.00 42.55 5.14
4420 5102 7.610865 TGTCCAGATTTTGAACTTCAAACTTT 58.389 30.769 15.19 4.53 45.03 2.66
4479 5161 3.904339 ACTCCAGAAATAGGTGACACAGT 59.096 43.478 8.08 0.00 0.00 3.55
4481 5163 3.901222 TCACTCCAGAAATAGGTGACACA 59.099 43.478 8.08 0.00 32.91 3.72
4715 5397 7.979444 ACCGGAATGGAATTATAAGTATGTG 57.021 36.000 9.46 0.00 42.00 3.21
4727 5409 3.696051 CAGAATGACAACCGGAATGGAAT 59.304 43.478 9.46 2.26 38.30 3.01
4737 5419 3.214328 ACACTCAACCAGAATGACAACC 58.786 45.455 0.00 0.00 39.69 3.77
4753 5435 2.414559 CGTTCCATCATGCCAAACACTC 60.415 50.000 0.00 0.00 0.00 3.51
4797 5479 7.477144 AAATTTTGAAAACCAGAACGGAATC 57.523 32.000 0.00 0.00 38.63 2.52
4798 5480 7.335673 ACAAAATTTTGAAAACCAGAACGGAAT 59.664 29.630 32.20 5.56 40.55 3.01
4846 5529 3.673902 TGGTATGTGTTCCTCATGTGTG 58.326 45.455 0.00 0.00 0.00 3.82
4883 5566 6.538945 TTTATCCCTTTTGCCCATAGTTTC 57.461 37.500 0.00 0.00 0.00 2.78
4986 5669 6.321181 GGGTCTGTAATCCTTTGCAAATATGA 59.679 38.462 13.23 10.18 0.00 2.15
5008 5691 1.318934 AAGGGCAGGGAATATTGGGT 58.681 50.000 0.00 0.00 0.00 4.51
5060 5743 5.423610 AGCCACACTGATTCTTACTATCACT 59.576 40.000 0.00 0.00 0.00 3.41
5119 5802 3.466836 TGTACTAGTACCGGTCCATACG 58.533 50.000 26.41 0.00 35.26 3.06
5134 5817 1.486310 CCATTCTGGCTGGCTGTACTA 59.514 52.381 2.00 0.00 0.00 1.82
5173 5856 1.050988 ATGCAGACGCCTACATCCCT 61.051 55.000 0.00 0.00 37.32 4.20
5210 5893 0.811219 CAGCTGAAATCGCCGGATCA 60.811 55.000 8.42 0.00 30.81 2.92
5363 6055 4.081807 ACTCCTCCGTTTTAGCGATTAGTT 60.082 41.667 0.00 0.00 0.00 2.24
5365 6057 4.043037 ACTCCTCCGTTTTAGCGATTAG 57.957 45.455 0.00 0.00 0.00 1.73
5414 6106 6.358178 TGGTTTAATCTGGTACTGTTCAACA 58.642 36.000 0.00 0.00 0.00 3.33
5415 6107 6.870971 TGGTTTAATCTGGTACTGTTCAAC 57.129 37.500 0.00 0.00 0.00 3.18
5495 6187 9.346005 ACTTCTCTTTCCTTATTCCGTTTAAAA 57.654 29.630 0.00 0.00 0.00 1.52
5496 6188 8.913487 ACTTCTCTTTCCTTATTCCGTTTAAA 57.087 30.769 0.00 0.00 0.00 1.52
5497 6189 8.780249 CAACTTCTCTTTCCTTATTCCGTTTAA 58.220 33.333 0.00 0.00 0.00 1.52
5498 6190 8.152246 TCAACTTCTCTTTCCTTATTCCGTTTA 58.848 33.333 0.00 0.00 0.00 2.01
5499 6191 6.996282 TCAACTTCTCTTTCCTTATTCCGTTT 59.004 34.615 0.00 0.00 0.00 3.60
5500 6192 6.531021 TCAACTTCTCTTTCCTTATTCCGTT 58.469 36.000 0.00 0.00 0.00 4.44
5501 6193 6.110411 TCAACTTCTCTTTCCTTATTCCGT 57.890 37.500 0.00 0.00 0.00 4.69
5502 6194 6.166982 ACTCAACTTCTCTTTCCTTATTCCG 58.833 40.000 0.00 0.00 0.00 4.30
5503 6195 7.661847 TGAACTCAACTTCTCTTTCCTTATTCC 59.338 37.037 0.00 0.00 0.00 3.01
5504 6196 8.608844 TGAACTCAACTTCTCTTTCCTTATTC 57.391 34.615 0.00 0.00 0.00 1.75
5505 6197 8.980481 TTGAACTCAACTTCTCTTTCCTTATT 57.020 30.769 0.00 0.00 0.00 1.40
5506 6198 8.980481 TTTGAACTCAACTTCTCTTTCCTTAT 57.020 30.769 0.00 0.00 35.28 1.73
5507 6199 8.047310 ACTTTGAACTCAACTTCTCTTTCCTTA 58.953 33.333 0.00 0.00 35.28 2.69
5525 6217 5.821204 ACATGAAACTGCACTACTTTGAAC 58.179 37.500 0.00 0.00 0.00 3.18
5554 6246 3.843422 TGCAAATTGTATATCCCCAGGG 58.157 45.455 0.00 0.00 0.00 4.45
5610 6302 2.224378 TGCAGCAGCTAAACACTCTCTT 60.224 45.455 1.76 0.00 42.74 2.85
5627 6319 2.838386 ACAATAGAGCGCATTTGCAG 57.162 45.000 11.47 0.00 42.21 4.41
5693 6386 8.696043 TGGAGACCATATTGAAATATCCAAAG 57.304 34.615 0.00 0.00 29.35 2.77
5835 6529 6.818233 ACAATACTACTTCCTTTAGGCTAGC 58.182 40.000 6.04 6.04 34.44 3.42
5923 6630 7.195374 ACTAGAGCATAAACAGGATAACCAA 57.805 36.000 0.00 0.00 38.94 3.67
6170 6877 7.234355 TCTCTTTTCCTTTTGAGCCTTCTATT 58.766 34.615 0.00 0.00 0.00 1.73
6207 6914 0.888736 TCACATGGACAAGGGCAACG 60.889 55.000 0.00 0.00 37.60 4.10
6378 7087 1.073768 GAAAGCTGAGACGAGCGACC 61.074 60.000 0.00 0.00 44.24 4.79
6379 7088 1.399504 CGAAAGCTGAGACGAGCGAC 61.400 60.000 0.00 0.00 44.24 5.19
6450 7159 6.678568 GATCTGAAGAGATCCCCTTTCATA 57.321 41.667 0.00 0.00 46.40 2.15
6494 7203 6.038936 TGACCAGATATTTCACATGATTGCAG 59.961 38.462 0.00 0.00 0.00 4.41
6575 7284 9.920946 ATGAAAGTTTATATTCACACCTGGTAT 57.079 29.630 0.00 0.00 38.29 2.73
6594 7303 3.347077 CTGGAAGCCTGAGATGAAAGT 57.653 47.619 0.00 0.00 0.00 2.66
6662 7372 1.810030 GGGACGATCTGCCGACAAC 60.810 63.158 0.00 0.00 0.00 3.32
6750 7460 2.032681 GCTCACGAAACCCAGGCT 59.967 61.111 0.00 0.00 0.00 4.58
6762 7472 3.200593 CAGGCATGGCGAGCTCAC 61.201 66.667 15.40 3.30 0.00 3.51
6789 7501 4.153411 CCTAGGACTAGTTATCCTGGTGG 58.847 52.174 1.05 7.29 46.48 4.61
6857 7569 3.939592 AGGCGCAGATTTTAAACTACTCC 59.060 43.478 10.83 0.00 0.00 3.85
6860 7572 4.331717 TGCTAGGCGCAGATTTTAAACTAC 59.668 41.667 10.83 0.00 45.47 2.73
6880 7602 6.059787 ACTGAACCTAAAAGATCAGATGCT 57.940 37.500 8.48 0.00 41.38 3.79
6956 7678 2.932614 CAAGATCCCGTTGTCAGATCAC 59.067 50.000 0.00 0.00 39.10 3.06
7072 7794 5.932619 AACCTGGTTTTAGTTTGAGCTTT 57.067 34.783 6.18 0.00 0.00 3.51
7075 7797 6.387041 AACTAACCTGGTTTTAGTTTGAGC 57.613 37.500 18.58 0.00 43.97 4.26
7079 7801 8.570488 CGGAAATAACTAACCTGGTTTTAGTTT 58.430 33.333 24.96 16.45 43.97 2.66
7080 7802 7.938490 TCGGAAATAACTAACCTGGTTTTAGTT 59.062 33.333 23.85 23.85 46.62 2.24
7081 7803 7.452562 TCGGAAATAACTAACCTGGTTTTAGT 58.547 34.615 18.58 13.07 40.74 2.24
7082 7804 7.910441 TCGGAAATAACTAACCTGGTTTTAG 57.090 36.000 18.58 12.39 33.46 1.85
7083 7805 7.095271 CGTTCGGAAATAACTAACCTGGTTTTA 60.095 37.037 18.58 11.46 0.00 1.52
7084 7806 6.293571 CGTTCGGAAATAACTAACCTGGTTTT 60.294 38.462 18.58 9.49 0.00 2.43
7085 7807 5.179929 CGTTCGGAAATAACTAACCTGGTTT 59.820 40.000 18.58 2.13 0.00 3.27
7088 7810 3.619929 CCGTTCGGAAATAACTAACCTGG 59.380 47.826 5.19 0.00 0.00 4.45
7089 7811 3.619929 CCCGTTCGGAAATAACTAACCTG 59.380 47.826 13.08 0.00 0.00 4.00
7091 7813 2.938451 CCCCGTTCGGAAATAACTAACC 59.062 50.000 13.08 0.00 0.00 2.85
7092 7814 3.860641 TCCCCGTTCGGAAATAACTAAC 58.139 45.455 13.08 0.00 0.00 2.34
7094 7816 3.364549 TCTCCCCGTTCGGAAATAACTA 58.635 45.455 13.08 0.00 0.00 2.24
7096 7818 2.093816 ACTCTCCCCGTTCGGAAATAAC 60.094 50.000 13.08 0.00 0.00 1.89
7097 7819 2.181975 ACTCTCCCCGTTCGGAAATAA 58.818 47.619 13.08 0.00 0.00 1.40
7103 7838 2.783288 GGCTACTCTCCCCGTTCGG 61.783 68.421 4.08 4.08 0.00 4.30
7112 7847 7.600752 GTGATGAGTAAATTATGGGCTACTCTC 59.399 40.741 11.92 8.55 40.52 3.20
7113 7848 7.291182 AGTGATGAGTAAATTATGGGCTACTCT 59.709 37.037 11.92 1.60 40.52 3.24
7115 7850 7.380423 AGTGATGAGTAAATTATGGGCTACT 57.620 36.000 0.00 0.00 0.00 2.57
7130 7865 7.387948 AGCGTTAATTTTAGACAAGTGATGAGT 59.612 33.333 0.00 0.00 0.00 3.41
7158 7893 3.939066 AGGAACGGAGGAAGTACAAATG 58.061 45.455 0.00 0.00 0.00 2.32
7197 7932 8.522830 CCATATGTTGTAGTCCTTTTGAAATGT 58.477 33.333 1.24 0.00 0.00 2.71
7198 7933 8.739039 TCCATATGTTGTAGTCCTTTTGAAATG 58.261 33.333 1.24 0.00 0.00 2.32
7199 7934 8.877864 TCCATATGTTGTAGTCCTTTTGAAAT 57.122 30.769 1.24 0.00 0.00 2.17
7200 7935 8.739039 CATCCATATGTTGTAGTCCTTTTGAAA 58.261 33.333 1.24 0.00 0.00 2.69
7201 7936 8.279970 CATCCATATGTTGTAGTCCTTTTGAA 57.720 34.615 1.24 0.00 0.00 2.69
7202 7937 7.864108 CATCCATATGTTGTAGTCCTTTTGA 57.136 36.000 1.24 0.00 0.00 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.