Multiple sequence alignment - TraesCS4B01G233600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G233600 chr4B 100.000 4293 0 0 1 4293 486209106 486204814 0.000000e+00 7928.0
1 TraesCS4B01G233600 chr4A 93.305 3495 155 39 186 3623 76625689 76629161 0.000000e+00 5084.0
2 TraesCS4B01G233600 chr4A 96.373 193 4 1 3 192 242879511 242879319 8.960000e-82 315.0
3 TraesCS4B01G233600 chr4D 94.542 2858 101 23 1254 4061 394967150 394970002 0.000000e+00 4362.0
4 TraesCS4B01G233600 chr4D 93.031 574 27 5 186 747 394966023 394966595 0.000000e+00 826.0
5 TraesCS4B01G233600 chr4D 93.613 501 20 6 795 1295 394966670 394967158 0.000000e+00 737.0
6 TraesCS4B01G233600 chr4D 97.368 190 5 0 3 192 69193722 69193533 1.490000e-84 324.0
7 TraesCS4B01G233600 chr4D 94.886 176 8 1 4118 4293 5829104 5829278 1.520000e-69 274.0
8 TraesCS4B01G233600 chr7D 96.842 190 6 0 3 192 464219732 464219543 6.930000e-83 318.0
9 TraesCS4B01G233600 chr7D 96.842 190 6 0 3 192 469200701 469200512 6.930000e-83 318.0
10 TraesCS4B01G233600 chr7D 95.429 175 7 1 4119 4293 243811953 243812126 1.180000e-70 278.0
11 TraesCS4B01G233600 chr7D 87.149 249 23 8 1958 2204 194224616 194224857 1.520000e-69 274.0
12 TraesCS4B01G233600 chr7D 94.413 179 9 1 4115 4293 439981008 439981185 1.520000e-69 274.0
13 TraesCS4B01G233600 chr5A 96.842 190 6 0 3 192 475532068 475532257 6.930000e-83 318.0
14 TraesCS4B01G233600 chr5A 95.402 174 7 1 4120 4293 38656644 38656816 4.230000e-70 276.0
15 TraesCS4B01G233600 chr3D 96.842 190 6 0 3 192 376818558 376818369 6.930000e-83 318.0
16 TraesCS4B01G233600 chr3D 94.886 176 8 1 4118 4293 250860384 250860210 1.520000e-69 274.0
17 TraesCS4B01G233600 chr3D 80.537 298 49 7 1905 2202 400313172 400312884 2.010000e-53 220.0
18 TraesCS4B01G233600 chr2D 96.842 190 6 0 3 192 249898764 249898953 6.930000e-83 318.0
19 TraesCS4B01G233600 chr2D 96.825 189 6 0 5 193 465970569 465970381 2.490000e-82 316.0
20 TraesCS4B01G233600 chr2D 95.429 175 7 1 4119 4293 554077093 554077266 1.180000e-70 278.0
21 TraesCS4B01G233600 chr1A 96.842 190 6 0 3 192 254378394 254378583 6.930000e-83 318.0
22 TraesCS4B01G233600 chrUn 84.244 311 37 8 1897 2204 92296468 92296167 4.200000e-75 292.0
23 TraesCS4B01G233600 chr7B 84.244 311 37 8 1897 2204 156754391 156754090 4.200000e-75 292.0
24 TraesCS4B01G233600 chr7B 86.747 249 24 8 1958 2204 158075369 158075610 7.080000e-68 268.0
25 TraesCS4B01G233600 chr7A 83.923 311 38 8 1897 2204 202853752 202853451 1.950000e-73 287.0
26 TraesCS4B01G233600 chr7A 87.149 249 23 8 1958 2204 203863715 203863956 1.520000e-69 274.0
27 TraesCS4B01G233600 chr6D 95.402 174 7 1 4120 4293 128262914 128262742 4.230000e-70 276.0
28 TraesCS4B01G233600 chr6D 95.402 174 7 1 4120 4293 159271720 159271892 4.230000e-70 276.0
29 TraesCS4B01G233600 chr1D 95.402 174 7 1 4120 4293 114767896 114768068 4.230000e-70 276.0
30 TraesCS4B01G233600 chr1D 76.716 408 74 13 1904 2296 429599547 429599948 1.560000e-49 207.0
31 TraesCS4B01G233600 chr1B 77.317 410 72 16 1904 2298 580622578 580622981 5.590000e-54 222.0
32 TraesCS4B01G233600 chr3A 80.537 298 49 7 1905 2202 519246399 519246111 2.010000e-53 220.0
33 TraesCS4B01G233600 chr3B 82.895 76 13 0 2365 2440 525991578 525991503 7.700000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G233600 chr4B 486204814 486209106 4292 True 7928 7928 100.000000 1 4293 1 chr4B.!!$R1 4292
1 TraesCS4B01G233600 chr4A 76625689 76629161 3472 False 5084 5084 93.305000 186 3623 1 chr4A.!!$F1 3437
2 TraesCS4B01G233600 chr4D 394966023 394970002 3979 False 1975 4362 93.728667 186 4061 3 chr4D.!!$F2 3875

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
164 165 0.032952 TTGACCTCGAAGTTCACCGG 59.967 55.000 0.00 0.0 0.0 5.28 F
166 167 0.109226 GACCTCGAAGTTCACCGGAG 60.109 60.000 9.46 0.0 0.0 4.63 F
427 442 0.179032 TTTTGACAGCTCCGCTCCAA 60.179 50.000 0.00 0.0 36.4 3.53 F
926 990 0.324943 CTTCTAGGTGGTGGTGGTGG 59.675 60.000 0.00 0.0 0.0 4.61 F
927 991 1.131303 TTCTAGGTGGTGGTGGTGGG 61.131 60.000 0.00 0.0 0.0 4.61 F
1118 1182 1.300233 GTGGATCATCGTCGGGAGC 60.300 63.158 0.00 0.0 0.0 4.70 F
2557 2680 1.140999 TGACGACGGACAACAACACG 61.141 55.000 0.00 0.0 0.0 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1136 1200 0.314302 GGATCCCGATGACGACGATT 59.686 55.000 0.00 0.00 42.66 3.34 R
1535 1647 1.484653 GCCTCTTCTTCTTCCTCCTCC 59.515 57.143 0.00 0.00 0.00 4.30 R
2270 2386 0.526211 AGTCTTCGTGCAGATACGCA 59.474 50.000 0.00 0.00 43.40 5.24 R
2533 2656 0.179094 TGTTGTCCGTCGTCAGCTTT 60.179 50.000 0.00 0.00 0.00 3.51 R
2537 2660 0.575390 GTGTTGTTGTCCGTCGTCAG 59.425 55.000 0.00 0.00 0.00 3.51 R
3076 3224 1.013323 CAGCGCGCGAACAATCTAC 60.013 57.895 37.18 12.54 0.00 2.59 R
3946 4110 0.099259 CATGCGTCAATGCCGATGTT 59.901 50.000 0.00 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.204418 GGCATCCTTCCTGCAAGC 58.796 61.111 0.00 0.00 41.47 4.01
18 19 2.421399 GGCATCCTTCCTGCAAGCC 61.421 63.158 0.00 0.00 41.47 4.35
19 20 1.379576 GCATCCTTCCTGCAAGCCT 60.380 57.895 0.00 0.00 39.46 4.58
20 21 1.382692 GCATCCTTCCTGCAAGCCTC 61.383 60.000 0.00 0.00 39.46 4.70
21 22 0.750911 CATCCTTCCTGCAAGCCTCC 60.751 60.000 0.00 0.00 0.00 4.30
22 23 0.918310 ATCCTTCCTGCAAGCCTCCT 60.918 55.000 0.00 0.00 0.00 3.69
23 24 1.378250 CCTTCCTGCAAGCCTCCTG 60.378 63.158 0.00 0.00 0.00 3.86
24 25 1.681666 CTTCCTGCAAGCCTCCTGA 59.318 57.895 0.00 0.00 0.00 3.86
25 26 0.676151 CTTCCTGCAAGCCTCCTGAC 60.676 60.000 0.00 0.00 0.00 3.51
26 27 1.418097 TTCCTGCAAGCCTCCTGACA 61.418 55.000 0.00 0.00 0.00 3.58
27 28 1.673665 CCTGCAAGCCTCCTGACAC 60.674 63.158 0.00 0.00 0.00 3.67
28 29 1.374190 CTGCAAGCCTCCTGACACT 59.626 57.895 0.00 0.00 0.00 3.55
29 30 0.250640 CTGCAAGCCTCCTGACACTT 60.251 55.000 0.00 0.00 0.00 3.16
30 31 0.535780 TGCAAGCCTCCTGACACTTG 60.536 55.000 0.00 0.00 41.89 3.16
31 32 1.239968 GCAAGCCTCCTGACACTTGG 61.240 60.000 0.00 0.00 39.87 3.61
32 33 1.073897 AAGCCTCCTGACACTTGGC 59.926 57.895 0.00 0.00 43.52 4.52
33 34 1.708993 AAGCCTCCTGACACTTGGCA 61.709 55.000 0.00 0.00 45.42 4.92
34 35 1.228245 GCCTCCTGACACTTGGCAA 60.228 57.895 0.00 0.00 42.79 4.52
35 36 0.823356 GCCTCCTGACACTTGGCAAA 60.823 55.000 0.00 0.00 42.79 3.68
36 37 1.242076 CCTCCTGACACTTGGCAAAG 58.758 55.000 0.00 0.00 39.49 2.77
38 39 2.224523 CCTCCTGACACTTGGCAAAGTA 60.225 50.000 6.06 0.00 45.07 2.24
39 40 3.070018 CTCCTGACACTTGGCAAAGTAG 58.930 50.000 6.06 0.38 45.07 2.57
40 41 2.154462 CCTGACACTTGGCAAAGTAGG 58.846 52.381 6.06 6.52 45.07 3.18
41 42 2.224523 CCTGACACTTGGCAAAGTAGGA 60.225 50.000 14.07 0.00 45.07 2.94
42 43 3.070018 CTGACACTTGGCAAAGTAGGAG 58.930 50.000 6.06 0.00 45.07 3.69
43 44 2.438021 TGACACTTGGCAAAGTAGGAGT 59.562 45.455 6.06 0.00 45.07 3.85
44 45 3.118038 TGACACTTGGCAAAGTAGGAGTT 60.118 43.478 6.06 0.00 45.07 3.01
45 46 3.477530 ACACTTGGCAAAGTAGGAGTTC 58.522 45.455 6.06 0.00 45.07 3.01
46 47 3.136626 ACACTTGGCAAAGTAGGAGTTCT 59.863 43.478 6.06 0.00 45.07 3.01
47 48 4.137543 CACTTGGCAAAGTAGGAGTTCTT 58.862 43.478 6.06 0.00 45.07 2.52
48 49 4.023707 CACTTGGCAAAGTAGGAGTTCTTG 60.024 45.833 6.06 0.00 45.07 3.02
49 50 2.504367 TGGCAAAGTAGGAGTTCTTGC 58.496 47.619 0.00 0.00 0.00 4.01
50 51 1.813178 GGCAAAGTAGGAGTTCTTGCC 59.187 52.381 8.25 8.25 34.04 4.52
51 52 2.553247 GGCAAAGTAGGAGTTCTTGCCT 60.553 50.000 15.15 0.00 36.24 4.75
52 53 2.744741 GCAAAGTAGGAGTTCTTGCCTC 59.255 50.000 0.00 0.00 35.73 4.70
57 58 3.542046 GGAGTTCTTGCCTCCTGAC 57.458 57.895 0.00 0.00 44.29 3.51
58 59 0.687354 GGAGTTCTTGCCTCCTGACA 59.313 55.000 0.00 0.00 44.29 3.58
59 60 1.609320 GGAGTTCTTGCCTCCTGACAC 60.609 57.143 0.00 0.00 44.29 3.67
60 61 1.070758 GAGTTCTTGCCTCCTGACACA 59.929 52.381 0.00 0.00 0.00 3.72
61 62 1.071385 AGTTCTTGCCTCCTGACACAG 59.929 52.381 0.00 0.00 0.00 3.66
73 74 3.045601 CTGACACAGGGTTTGAGGTAG 57.954 52.381 0.00 0.00 0.00 3.18
74 75 2.368875 CTGACACAGGGTTTGAGGTAGT 59.631 50.000 0.00 0.00 0.00 2.73
75 76 2.367567 TGACACAGGGTTTGAGGTAGTC 59.632 50.000 0.00 0.00 0.00 2.59
76 77 2.633481 GACACAGGGTTTGAGGTAGTCT 59.367 50.000 0.00 0.00 0.00 3.24
77 78 3.046374 ACACAGGGTTTGAGGTAGTCTT 58.954 45.455 0.00 0.00 0.00 3.01
78 79 3.071167 ACACAGGGTTTGAGGTAGTCTTC 59.929 47.826 0.00 0.00 0.00 2.87
79 80 3.071023 CACAGGGTTTGAGGTAGTCTTCA 59.929 47.826 0.00 0.00 0.00 3.02
80 81 3.071167 ACAGGGTTTGAGGTAGTCTTCAC 59.929 47.826 0.00 0.00 29.52 3.18
81 82 3.071023 CAGGGTTTGAGGTAGTCTTCACA 59.929 47.826 0.00 0.00 29.52 3.58
82 83 3.714798 AGGGTTTGAGGTAGTCTTCACAA 59.285 43.478 0.00 0.00 29.52 3.33
83 84 4.165372 AGGGTTTGAGGTAGTCTTCACAAA 59.835 41.667 0.00 0.00 29.52 2.83
84 85 5.070685 GGGTTTGAGGTAGTCTTCACAAAT 58.929 41.667 0.00 0.00 31.70 2.32
85 86 5.048713 GGGTTTGAGGTAGTCTTCACAAATG 60.049 44.000 0.00 0.00 31.70 2.32
86 87 5.531287 GGTTTGAGGTAGTCTTCACAAATGT 59.469 40.000 0.00 0.00 31.70 2.71
87 88 6.430451 GTTTGAGGTAGTCTTCACAAATGTG 58.570 40.000 7.22 7.22 46.91 3.21
88 89 4.641396 TGAGGTAGTCTTCACAAATGTGG 58.359 43.478 13.22 0.00 45.65 4.17
89 90 4.346709 TGAGGTAGTCTTCACAAATGTGGA 59.653 41.667 13.22 4.00 45.65 4.02
90 91 4.642429 AGGTAGTCTTCACAAATGTGGAC 58.358 43.478 13.22 12.69 45.65 4.02
91 92 3.751698 GGTAGTCTTCACAAATGTGGACC 59.248 47.826 13.22 7.88 45.65 4.46
92 93 3.576078 AGTCTTCACAAATGTGGACCA 57.424 42.857 13.22 0.00 45.65 4.02
93 94 4.104383 AGTCTTCACAAATGTGGACCAT 57.896 40.909 13.22 0.00 45.65 3.55
94 95 4.074970 AGTCTTCACAAATGTGGACCATC 58.925 43.478 13.22 0.00 45.65 3.51
95 96 4.074970 GTCTTCACAAATGTGGACCATCT 58.925 43.478 13.22 0.00 45.65 2.90
96 97 4.154918 GTCTTCACAAATGTGGACCATCTC 59.845 45.833 13.22 0.00 45.65 2.75
97 98 2.698803 TCACAAATGTGGACCATCTCG 58.301 47.619 13.22 0.00 45.65 4.04
98 99 1.739466 CACAAATGTGGACCATCTCGG 59.261 52.381 5.63 0.00 42.10 4.63
99 100 1.628340 ACAAATGTGGACCATCTCGGA 59.372 47.619 0.00 0.00 38.63 4.55
100 101 2.239654 ACAAATGTGGACCATCTCGGAT 59.760 45.455 0.00 0.00 38.63 4.18
101 102 3.454447 ACAAATGTGGACCATCTCGGATA 59.546 43.478 0.00 0.00 38.63 2.59
102 103 4.060900 CAAATGTGGACCATCTCGGATAG 58.939 47.826 0.00 0.00 38.63 2.08
103 104 2.748209 TGTGGACCATCTCGGATAGA 57.252 50.000 0.00 0.00 38.63 1.98
104 105 3.244887 TGTGGACCATCTCGGATAGAT 57.755 47.619 0.00 0.00 46.36 1.98
113 114 4.717233 ATCTCGGATAGATGTCATCTGC 57.283 45.455 23.17 15.06 43.62 4.26
114 115 3.760738 TCTCGGATAGATGTCATCTGCT 58.239 45.455 23.17 11.64 40.51 4.24
115 116 4.911390 TCTCGGATAGATGTCATCTGCTA 58.089 43.478 23.17 5.97 40.51 3.49
116 117 4.940654 TCTCGGATAGATGTCATCTGCTAG 59.059 45.833 23.17 15.36 40.51 3.42
117 118 4.013050 TCGGATAGATGTCATCTGCTAGG 58.987 47.826 23.17 10.03 40.51 3.02
118 119 3.761218 CGGATAGATGTCATCTGCTAGGT 59.239 47.826 23.17 4.47 40.51 3.08
119 120 4.944317 CGGATAGATGTCATCTGCTAGGTA 59.056 45.833 23.17 3.84 40.51 3.08
120 121 5.065859 CGGATAGATGTCATCTGCTAGGTAG 59.934 48.000 23.17 5.03 40.51 3.18
121 122 5.949354 GGATAGATGTCATCTGCTAGGTAGT 59.051 44.000 23.17 0.00 40.51 2.73
122 123 7.113437 GGATAGATGTCATCTGCTAGGTAGTA 58.887 42.308 23.17 1.74 40.51 1.82
123 124 7.777910 GGATAGATGTCATCTGCTAGGTAGTAT 59.222 40.741 23.17 6.39 40.51 2.12
124 125 8.746052 ATAGATGTCATCTGCTAGGTAGTATC 57.254 38.462 23.17 0.00 40.51 2.24
125 126 5.949354 AGATGTCATCTGCTAGGTAGTATCC 59.051 44.000 14.73 0.00 38.44 2.59
126 127 4.408276 TGTCATCTGCTAGGTAGTATCCC 58.592 47.826 0.00 0.00 0.00 3.85
127 128 4.106502 TGTCATCTGCTAGGTAGTATCCCT 59.893 45.833 0.00 0.00 36.04 4.20
128 129 5.081032 GTCATCTGCTAGGTAGTATCCCTT 58.919 45.833 0.00 0.00 33.35 3.95
129 130 5.047660 GTCATCTGCTAGGTAGTATCCCTTG 60.048 48.000 0.00 0.00 33.35 3.61
130 131 4.537945 TCTGCTAGGTAGTATCCCTTGT 57.462 45.455 0.00 0.00 33.35 3.16
131 132 4.880164 TCTGCTAGGTAGTATCCCTTGTT 58.120 43.478 0.00 0.00 33.35 2.83
132 133 4.649674 TCTGCTAGGTAGTATCCCTTGTTG 59.350 45.833 0.00 0.00 33.35 3.33
133 134 4.359105 TGCTAGGTAGTATCCCTTGTTGT 58.641 43.478 0.00 0.00 33.35 3.32
134 135 5.521696 TGCTAGGTAGTATCCCTTGTTGTA 58.478 41.667 0.00 0.00 33.35 2.41
135 136 5.597182 TGCTAGGTAGTATCCCTTGTTGTAG 59.403 44.000 0.00 0.00 33.35 2.74
136 137 5.597594 GCTAGGTAGTATCCCTTGTTGTAGT 59.402 44.000 0.00 0.00 33.35 2.73
137 138 5.934402 AGGTAGTATCCCTTGTTGTAGTG 57.066 43.478 0.00 0.00 0.00 2.74
138 139 4.715297 AGGTAGTATCCCTTGTTGTAGTGG 59.285 45.833 0.00 0.00 0.00 4.00
139 140 3.629142 AGTATCCCTTGTTGTAGTGGC 57.371 47.619 0.00 0.00 0.00 5.01
140 141 2.093658 AGTATCCCTTGTTGTAGTGGCG 60.094 50.000 0.00 0.00 0.00 5.69
141 142 0.690762 ATCCCTTGTTGTAGTGGCGT 59.309 50.000 0.00 0.00 0.00 5.68
142 143 0.034337 TCCCTTGTTGTAGTGGCGTC 59.966 55.000 0.00 0.00 0.00 5.19
143 144 0.953960 CCCTTGTTGTAGTGGCGTCC 60.954 60.000 0.00 0.00 0.00 4.79
144 145 0.250124 CCTTGTTGTAGTGGCGTCCA 60.250 55.000 0.00 0.00 0.00 4.02
145 146 1.610624 CCTTGTTGTAGTGGCGTCCAT 60.611 52.381 1.90 0.00 35.28 3.41
146 147 2.151202 CTTGTTGTAGTGGCGTCCATT 58.849 47.619 1.90 0.99 35.28 3.16
147 148 1.518325 TGTTGTAGTGGCGTCCATTG 58.482 50.000 1.90 0.00 35.28 2.82
148 149 1.070914 TGTTGTAGTGGCGTCCATTGA 59.929 47.619 1.90 0.00 35.28 2.57
149 150 1.463444 GTTGTAGTGGCGTCCATTGAC 59.537 52.381 1.90 2.48 35.28 3.18
150 151 0.036765 TGTAGTGGCGTCCATTGACC 60.037 55.000 1.90 0.00 38.32 4.02
151 152 0.249398 GTAGTGGCGTCCATTGACCT 59.751 55.000 1.90 0.00 38.32 3.85
152 153 0.535335 TAGTGGCGTCCATTGACCTC 59.465 55.000 1.90 0.00 38.32 3.85
153 154 2.100631 GTGGCGTCCATTGACCTCG 61.101 63.158 1.90 0.00 38.32 4.63
154 155 2.279810 TGGCGTCCATTGACCTCGA 61.280 57.895 0.00 0.00 38.32 4.04
155 156 1.079405 GGCGTCCATTGACCTCGAA 60.079 57.895 0.00 0.00 38.32 3.71
156 157 1.084370 GGCGTCCATTGACCTCGAAG 61.084 60.000 0.00 0.00 38.32 3.79
157 158 0.389948 GCGTCCATTGACCTCGAAGT 60.390 55.000 0.00 0.00 38.32 3.01
158 159 1.939838 GCGTCCATTGACCTCGAAGTT 60.940 52.381 0.00 0.00 38.32 2.66
159 160 1.993370 CGTCCATTGACCTCGAAGTTC 59.007 52.381 0.00 0.00 38.32 3.01
160 161 2.609491 CGTCCATTGACCTCGAAGTTCA 60.609 50.000 3.32 0.00 38.32 3.18
161 162 2.737252 GTCCATTGACCTCGAAGTTCAC 59.263 50.000 3.32 0.00 35.34 3.18
162 163 2.076863 CCATTGACCTCGAAGTTCACC 58.923 52.381 3.32 0.00 0.00 4.02
163 164 1.726791 CATTGACCTCGAAGTTCACCG 59.273 52.381 3.32 0.00 0.00 4.94
164 165 0.032952 TTGACCTCGAAGTTCACCGG 59.967 55.000 0.00 0.00 0.00 5.28
165 166 0.824595 TGACCTCGAAGTTCACCGGA 60.825 55.000 9.46 0.00 0.00 5.14
166 167 0.109226 GACCTCGAAGTTCACCGGAG 60.109 60.000 9.46 0.00 0.00 4.63
179 180 4.844420 CGGAGGAGCATGACCTTC 57.156 61.111 12.07 9.69 37.93 3.46
180 181 1.900351 CGGAGGAGCATGACCTTCA 59.100 57.895 15.02 0.00 37.93 3.02
181 182 0.250234 CGGAGGAGCATGACCTTCAA 59.750 55.000 15.02 0.00 37.93 2.69
182 183 1.743996 GGAGGAGCATGACCTTCAAC 58.256 55.000 12.07 1.69 37.93 3.18
183 184 1.003580 GGAGGAGCATGACCTTCAACA 59.996 52.381 12.07 0.00 37.93 3.33
184 185 2.553028 GGAGGAGCATGACCTTCAACAA 60.553 50.000 12.07 0.00 37.93 2.83
217 218 0.978146 CCAGTCAATCCCTCCCGTCT 60.978 60.000 0.00 0.00 0.00 4.18
242 243 2.037053 CATCCAACGGCCAACAACA 58.963 52.632 2.24 0.00 0.00 3.33
279 280 0.958091 CTGTTCACCATCCGGCAAAA 59.042 50.000 0.00 0.00 34.57 2.44
287 288 1.605202 CCATCCGGCAAAACACCTTTG 60.605 52.381 0.00 0.00 46.20 2.77
313 320 1.672881 CCGCTTCTCCCATTTGATGTC 59.327 52.381 0.00 0.00 0.00 3.06
378 393 1.072332 TTCAGCTACGGCCTGCAAA 59.928 52.632 13.35 5.78 39.73 3.68
399 414 1.443194 GCATGGCAAACACGAGCAG 60.443 57.895 0.00 0.00 0.00 4.24
404 419 3.046968 TGGCAAACACGAGCAGTAATA 57.953 42.857 0.00 0.00 0.00 0.98
427 442 0.179032 TTTTGACAGCTCCGCTCCAA 60.179 50.000 0.00 0.00 36.40 3.53
521 536 4.994852 TCCAAGAAATGTGACGAAACCTAG 59.005 41.667 0.00 0.00 0.00 3.02
541 557 1.078426 CCACCCAAGCCTACTTCCG 60.078 63.158 0.00 0.00 32.29 4.30
592 608 5.626142 ACCCCTTCTTTCTCTTCTTCTTTC 58.374 41.667 0.00 0.00 0.00 2.62
705 722 4.730521 CGCAGAGCCGAAGAATTTAATTTC 59.269 41.667 2.50 2.50 0.00 2.17
751 814 1.021968 GCGTGGTTACCATTGATCCC 58.978 55.000 7.58 0.00 35.28 3.85
777 841 1.662122 GCGGGAATTTACGTCGATTGT 59.338 47.619 0.00 0.00 0.00 2.71
831 895 7.411486 TCAACTTAGGTCTGAAATCTCTAGG 57.589 40.000 0.00 0.00 0.00 3.02
924 988 1.909302 CATCTTCTAGGTGGTGGTGGT 59.091 52.381 0.00 0.00 0.00 4.16
925 989 1.348064 TCTTCTAGGTGGTGGTGGTG 58.652 55.000 0.00 0.00 0.00 4.17
926 990 0.324943 CTTCTAGGTGGTGGTGGTGG 59.675 60.000 0.00 0.00 0.00 4.61
927 991 1.131303 TTCTAGGTGGTGGTGGTGGG 61.131 60.000 0.00 0.00 0.00 4.61
1005 1069 4.018597 GGAATCCTCCTATCAGCAATGGAT 60.019 45.833 0.00 0.00 38.88 3.41
1107 1171 2.443394 GGATGGCTCGGGTGGATCA 61.443 63.158 0.00 0.00 0.00 2.92
1118 1182 1.300233 GTGGATCATCGTCGGGAGC 60.300 63.158 0.00 0.00 0.00 4.70
1136 1200 1.735376 GCTTCGGATAGCTCGGGTGA 61.735 60.000 0.00 0.00 38.15 4.02
1553 1665 2.765699 CCAGGAGGAGGAAGAAGAAGAG 59.234 54.545 0.00 0.00 36.89 2.85
2111 2227 4.619227 CACCACCGCCACCTCGTT 62.619 66.667 0.00 0.00 0.00 3.85
2139 2255 4.899239 GCTACTGCATCGCCGGCT 62.899 66.667 26.68 2.78 39.41 5.52
2191 2307 2.338620 CAACGACACCCTCGAGCA 59.661 61.111 6.99 0.00 46.14 4.26
2195 2311 2.982130 GACACCCTCGAGCACCAT 59.018 61.111 6.99 0.00 0.00 3.55
2246 2362 2.821366 CGCAAGAGGCTCGCCATT 60.821 61.111 9.22 1.68 41.67 3.16
2276 2392 2.440247 GCCAAGGGCCTTGCGTAT 60.440 61.111 35.76 3.71 44.06 3.06
2320 2439 2.259917 TCTCTTCTTCTGGCCACATCA 58.740 47.619 0.00 0.00 0.00 3.07
2461 2583 5.791367 ATCTGTGAGATTTGTGAATCACG 57.209 39.130 9.00 0.00 43.35 4.35
2467 2589 2.485426 AGATTTGTGAATCACGGTGCAG 59.515 45.455 9.00 0.00 43.35 4.41
2557 2680 1.140999 TGACGACGGACAACAACACG 61.141 55.000 0.00 0.00 0.00 4.49
2686 2814 1.666189 GTTAATGTCTTCTCCGCTGGC 59.334 52.381 0.00 0.00 0.00 4.85
3018 3154 3.866651 AGATGAAACAGGTCAAGATCGG 58.133 45.455 0.00 0.00 0.00 4.18
3209 3357 0.035725 CATCAACAGGCTGAGGCAGA 60.036 55.000 23.66 11.08 40.87 4.26
3291 3439 0.662619 ACAACACAACGGCATCACTG 59.337 50.000 0.00 0.00 0.00 3.66
3327 3475 1.268794 CGAGGAGCTCTTCACCGTATG 60.269 57.143 23.87 3.73 0.00 2.39
3328 3476 2.025155 GAGGAGCTCTTCACCGTATGA 58.975 52.381 20.15 0.00 34.65 2.15
3377 3530 6.945636 AAGGGAATCGATTGGGTATATACA 57.054 37.500 16.96 0.00 0.00 2.29
3393 3552 7.361542 GGGTATATACATACGAGGTGTACACTG 60.362 44.444 24.55 16.02 38.35 3.66
3541 3702 8.708613 AAAGAGAACTTCAATGGAGAGCCTCC 62.709 46.154 12.83 12.83 42.00 4.30
3658 3822 0.459237 GATGGATGATCTAGCGGCCG 60.459 60.000 24.05 24.05 0.00 6.13
3664 3828 1.374758 GATCTAGCGGCCGATTGGG 60.375 63.158 33.48 16.75 39.58 4.12
3666 3830 1.696097 ATCTAGCGGCCGATTGGGTT 61.696 55.000 33.48 9.72 38.44 4.11
3669 3833 4.114997 GCGGCCGATTGGGTTGTG 62.115 66.667 33.48 0.00 38.44 3.33
3680 3844 0.036164 TGGGTTGTGCGCTAGATTGT 59.964 50.000 9.73 0.00 0.00 2.71
3682 3846 1.664151 GGGTTGTGCGCTAGATTGTAC 59.336 52.381 9.73 0.00 0.00 2.90
3689 3853 2.205074 GCGCTAGATTGTACTGTGCAT 58.795 47.619 0.00 0.00 0.00 3.96
3727 3891 0.249447 TCGATCAGGCGCAATCGATT 60.249 50.000 27.14 4.39 46.30 3.34
3731 3895 2.238942 TCAGGCGCAATCGATTGTAT 57.761 45.000 32.52 17.11 39.88 2.29
3757 3921 3.365565 GGTTAACCTTAATGCGTGTGTGG 60.366 47.826 17.83 0.00 0.00 4.17
3777 3941 0.889186 AACACAAACCCTAGCTGCCG 60.889 55.000 0.00 0.00 0.00 5.69
3801 3965 2.252855 CTCGACCTAGATCGCGCC 59.747 66.667 0.05 0.00 41.97 6.53
3829 3993 0.454600 TAGAACCCTGACGCGTGATC 59.545 55.000 20.70 6.46 0.00 2.92
3837 4001 1.590238 CTGACGCGTGATCCTCAAATC 59.410 52.381 20.70 0.00 0.00 2.17
3841 4005 2.167693 ACGCGTGATCCTCAAATCCTTA 59.832 45.455 12.93 0.00 0.00 2.69
3862 4026 6.043243 CCTTATACATGTGGATACCTTGGAGT 59.957 42.308 9.11 0.00 0.00 3.85
3864 4028 4.657814 ACATGTGGATACCTTGGAGTTT 57.342 40.909 0.00 0.00 0.00 2.66
3866 4030 6.134535 ACATGTGGATACCTTGGAGTTTTA 57.865 37.500 0.00 0.00 0.00 1.52
3868 4032 4.585879 TGTGGATACCTTGGAGTTTTAGC 58.414 43.478 0.00 0.00 0.00 3.09
3872 4036 4.395231 GGATACCTTGGAGTTTTAGCACAC 59.605 45.833 0.00 0.00 0.00 3.82
3874 4038 2.218603 CCTTGGAGTTTTAGCACACGT 58.781 47.619 0.00 0.00 0.00 4.49
3885 4049 2.203139 CACACGTGGTGCTTGGGA 60.203 61.111 21.57 0.00 41.36 4.37
3886 4050 1.821759 CACACGTGGTGCTTGGGAA 60.822 57.895 21.57 0.00 41.36 3.97
3890 4054 0.958822 ACGTGGTGCTTGGGAAAATC 59.041 50.000 0.00 0.00 0.00 2.17
3891 4055 0.958091 CGTGGTGCTTGGGAAAATCA 59.042 50.000 0.00 0.00 0.00 2.57
3902 4066 5.305128 GCTTGGGAAAATCATTCATGGGATA 59.695 40.000 0.00 0.00 0.00 2.59
3946 4110 1.185618 CGGGGAAGAGGAGTGTGACA 61.186 60.000 0.00 0.00 0.00 3.58
3988 4152 0.880278 TCGACAGCCTTTCACTGCAC 60.880 55.000 0.00 0.00 38.79 4.57
4020 4184 4.467769 AGAGGTAATTCATGGCTCCATTG 58.532 43.478 0.00 0.00 33.90 2.82
4043 4207 5.659525 TGTCGATTACTTCCAGGATTTCCTA 59.340 40.000 0.00 0.00 46.65 2.94
4048 4212 6.500589 TTACTTCCAGGATTTCCTAGGATG 57.499 41.667 13.57 7.35 46.65 3.51
4061 4225 4.160329 TCCTAGGATGAATGCGGTAGAAT 58.840 43.478 7.62 0.00 0.00 2.40
4062 4226 5.330233 TCCTAGGATGAATGCGGTAGAATA 58.670 41.667 7.62 0.00 0.00 1.75
4063 4227 5.419155 TCCTAGGATGAATGCGGTAGAATAG 59.581 44.000 7.62 0.00 0.00 1.73
4064 4228 4.543590 AGGATGAATGCGGTAGAATAGG 57.456 45.455 0.00 0.00 0.00 2.57
4065 4229 3.904339 AGGATGAATGCGGTAGAATAGGT 59.096 43.478 0.00 0.00 0.00 3.08
4066 4230 4.021016 AGGATGAATGCGGTAGAATAGGTC 60.021 45.833 0.00 0.00 0.00 3.85
4067 4231 4.262463 GGATGAATGCGGTAGAATAGGTCA 60.262 45.833 0.00 0.00 0.00 4.02
4068 4232 4.322080 TGAATGCGGTAGAATAGGTCAG 57.678 45.455 0.00 0.00 0.00 3.51
4069 4233 3.069586 TGAATGCGGTAGAATAGGTCAGG 59.930 47.826 0.00 0.00 0.00 3.86
4070 4234 2.154567 TGCGGTAGAATAGGTCAGGT 57.845 50.000 0.00 0.00 0.00 4.00
4071 4235 1.754803 TGCGGTAGAATAGGTCAGGTG 59.245 52.381 0.00 0.00 0.00 4.00
4072 4236 2.029623 GCGGTAGAATAGGTCAGGTGA 58.970 52.381 0.00 0.00 0.00 4.02
4073 4237 2.034812 GCGGTAGAATAGGTCAGGTGAG 59.965 54.545 0.00 0.00 0.00 3.51
4074 4238 3.552875 CGGTAGAATAGGTCAGGTGAGA 58.447 50.000 0.00 0.00 0.00 3.27
4075 4239 3.952323 CGGTAGAATAGGTCAGGTGAGAA 59.048 47.826 0.00 0.00 0.00 2.87
4076 4240 4.401519 CGGTAGAATAGGTCAGGTGAGAAA 59.598 45.833 0.00 0.00 0.00 2.52
4077 4241 5.450688 CGGTAGAATAGGTCAGGTGAGAAAG 60.451 48.000 0.00 0.00 0.00 2.62
4078 4242 4.479786 AGAATAGGTCAGGTGAGAAAGC 57.520 45.455 0.00 0.00 0.00 3.51
4079 4243 3.840666 AGAATAGGTCAGGTGAGAAAGCA 59.159 43.478 0.00 0.00 0.00 3.91
4080 4244 3.902881 ATAGGTCAGGTGAGAAAGCAG 57.097 47.619 0.00 0.00 0.00 4.24
4081 4245 1.722034 AGGTCAGGTGAGAAAGCAGA 58.278 50.000 0.00 0.00 0.00 4.26
4082 4246 2.050144 AGGTCAGGTGAGAAAGCAGAA 58.950 47.619 0.00 0.00 0.00 3.02
4083 4247 2.038295 AGGTCAGGTGAGAAAGCAGAAG 59.962 50.000 0.00 0.00 0.00 2.85
4084 4248 2.421619 GTCAGGTGAGAAAGCAGAAGG 58.578 52.381 0.00 0.00 0.00 3.46
4085 4249 1.163554 CAGGTGAGAAAGCAGAAGGC 58.836 55.000 0.00 0.00 45.30 4.35
4094 4258 4.943822 GCAGAAGGCACCTACTCC 57.056 61.111 0.00 0.00 43.97 3.85
4095 4259 1.153549 GCAGAAGGCACCTACTCCG 60.154 63.158 0.00 0.00 43.97 4.63
4096 4260 1.605058 GCAGAAGGCACCTACTCCGA 61.605 60.000 0.00 0.00 43.97 4.55
4097 4261 0.895530 CAGAAGGCACCTACTCCGAA 59.104 55.000 0.00 0.00 0.00 4.30
4098 4262 1.134965 CAGAAGGCACCTACTCCGAAG 60.135 57.143 0.00 0.00 0.00 3.79
4123 4287 2.867109 CCCCCTATAGCCACTTGATG 57.133 55.000 0.00 0.00 0.00 3.07
4137 4301 5.954296 CACTTGATGGAAATATGCCCTAG 57.046 43.478 0.00 0.00 0.00 3.02
4138 4302 5.624159 CACTTGATGGAAATATGCCCTAGA 58.376 41.667 0.00 0.00 0.00 2.43
4139 4303 5.704515 CACTTGATGGAAATATGCCCTAGAG 59.295 44.000 0.00 0.00 0.00 2.43
4140 4304 4.916041 TGATGGAAATATGCCCTAGAGG 57.084 45.455 0.00 0.00 39.47 3.69
4141 4305 4.242811 TGATGGAAATATGCCCTAGAGGT 58.757 43.478 0.00 0.00 38.26 3.85
4142 4306 5.411493 TGATGGAAATATGCCCTAGAGGTA 58.589 41.667 0.00 0.00 38.26 3.08
4143 4307 5.849475 TGATGGAAATATGCCCTAGAGGTAA 59.151 40.000 0.00 0.00 38.26 2.85
4144 4308 6.505344 TGATGGAAATATGCCCTAGAGGTAAT 59.495 38.462 0.00 0.00 38.26 1.89
4145 4309 7.682459 TGATGGAAATATGCCCTAGAGGTAATA 59.318 37.037 0.00 0.00 38.26 0.98
4146 4310 7.881912 TGGAAATATGCCCTAGAGGTAATAA 57.118 36.000 0.00 0.00 38.26 1.40
4147 4311 8.463055 TGGAAATATGCCCTAGAGGTAATAAT 57.537 34.615 0.00 0.00 38.26 1.28
4148 4312 9.569074 TGGAAATATGCCCTAGAGGTAATAATA 57.431 33.333 0.00 0.00 38.26 0.98
4155 4319 8.052621 TGCCCTAGAGGTAATAATAAAATGGT 57.947 34.615 0.00 0.00 38.26 3.55
4156 4320 8.507761 TGCCCTAGAGGTAATAATAAAATGGTT 58.492 33.333 0.00 0.00 38.26 3.67
4202 4366 9.797642 TCATGATACAGGTTTATTATTCATGCT 57.202 29.630 0.00 0.00 33.46 3.79
4218 4382 6.603237 TTCATGCTAGAATTGTATTGACCG 57.397 37.500 0.00 0.00 0.00 4.79
4219 4383 5.056480 TCATGCTAGAATTGTATTGACCGG 58.944 41.667 0.00 0.00 0.00 5.28
4220 4384 4.746535 TGCTAGAATTGTATTGACCGGA 57.253 40.909 9.46 0.00 0.00 5.14
4221 4385 5.092554 TGCTAGAATTGTATTGACCGGAA 57.907 39.130 9.46 0.00 0.00 4.30
4222 4386 5.492895 TGCTAGAATTGTATTGACCGGAAA 58.507 37.500 9.46 1.81 0.00 3.13
4223 4387 5.941058 TGCTAGAATTGTATTGACCGGAAAA 59.059 36.000 9.46 1.35 0.00 2.29
4224 4388 6.601613 TGCTAGAATTGTATTGACCGGAAAAT 59.398 34.615 9.46 10.13 0.00 1.82
4225 4389 7.122055 TGCTAGAATTGTATTGACCGGAAAATT 59.878 33.333 9.46 0.00 0.00 1.82
4226 4390 8.617809 GCTAGAATTGTATTGACCGGAAAATTA 58.382 33.333 9.46 0.00 0.00 1.40
4239 4403 8.625651 TGACCGGAAAATTAAATACATATGTGG 58.374 33.333 18.81 8.35 0.00 4.17
4240 4404 8.754991 ACCGGAAAATTAAATACATATGTGGA 57.245 30.769 18.81 0.00 0.00 4.02
4241 4405 9.362151 ACCGGAAAATTAAATACATATGTGGAT 57.638 29.630 18.81 1.75 0.00 3.41
4262 4426 8.373048 TGGATACATAAACAAATATCGTGTCC 57.627 34.615 0.00 0.00 46.17 4.02
4263 4427 7.442969 TGGATACATAAACAAATATCGTGTCCC 59.557 37.037 0.00 0.00 46.17 4.46
4264 4428 7.660208 GGATACATAAACAAATATCGTGTCCCT 59.340 37.037 0.00 0.00 29.76 4.20
4265 4429 9.701098 GATACATAAACAAATATCGTGTCCCTA 57.299 33.333 0.00 0.00 0.00 3.53
4267 4431 8.974060 ACATAAACAAATATCGTGTCCCTAAT 57.026 30.769 0.00 0.00 0.00 1.73
4268 4432 8.836413 ACATAAACAAATATCGTGTCCCTAATG 58.164 33.333 0.00 0.00 0.00 1.90
4269 4433 9.051679 CATAAACAAATATCGTGTCCCTAATGA 57.948 33.333 0.00 0.00 0.00 2.57
4270 4434 7.553881 AAACAAATATCGTGTCCCTAATGAG 57.446 36.000 0.00 0.00 0.00 2.90
4271 4435 5.057149 ACAAATATCGTGTCCCTAATGAGC 58.943 41.667 0.00 0.00 0.00 4.26
4272 4436 3.963428 ATATCGTGTCCCTAATGAGCC 57.037 47.619 0.00 0.00 0.00 4.70
4273 4437 1.794714 ATCGTGTCCCTAATGAGCCT 58.205 50.000 0.00 0.00 0.00 4.58
4274 4438 1.112113 TCGTGTCCCTAATGAGCCTC 58.888 55.000 0.00 0.00 0.00 4.70
4275 4439 1.115467 CGTGTCCCTAATGAGCCTCT 58.885 55.000 0.00 0.00 0.00 3.69
4276 4440 2.092049 TCGTGTCCCTAATGAGCCTCTA 60.092 50.000 0.00 0.00 0.00 2.43
4277 4441 2.034812 CGTGTCCCTAATGAGCCTCTAC 59.965 54.545 0.00 0.00 0.00 2.59
4278 4442 3.301274 GTGTCCCTAATGAGCCTCTACT 58.699 50.000 0.00 0.00 0.00 2.57
4279 4443 4.471548 GTGTCCCTAATGAGCCTCTACTA 58.528 47.826 0.00 0.00 0.00 1.82
4280 4444 4.521256 GTGTCCCTAATGAGCCTCTACTAG 59.479 50.000 0.00 0.00 0.00 2.57
4281 4445 4.415846 TGTCCCTAATGAGCCTCTACTAGA 59.584 45.833 0.00 0.00 0.00 2.43
4282 4446 4.763279 GTCCCTAATGAGCCTCTACTAGAC 59.237 50.000 0.00 0.00 0.00 2.59
4283 4447 4.665957 TCCCTAATGAGCCTCTACTAGACT 59.334 45.833 0.00 0.00 0.00 3.24
4284 4448 5.850583 TCCCTAATGAGCCTCTACTAGACTA 59.149 44.000 0.00 0.00 0.00 2.59
4285 4449 6.013206 TCCCTAATGAGCCTCTACTAGACTAG 60.013 46.154 8.00 8.00 0.00 2.57
4286 4450 5.646360 CCTAATGAGCCTCTACTAGACTAGC 59.354 48.000 9.52 0.00 0.00 3.42
4287 4451 4.993705 ATGAGCCTCTACTAGACTAGCT 57.006 45.455 9.52 0.35 0.00 3.32
4288 4452 4.345859 TGAGCCTCTACTAGACTAGCTC 57.654 50.000 9.52 10.19 44.25 4.09
4289 4453 3.243941 TGAGCCTCTACTAGACTAGCTCG 60.244 52.174 9.52 0.00 46.35 5.03
4290 4454 2.701951 AGCCTCTACTAGACTAGCTCGT 59.298 50.000 9.52 0.00 0.00 4.18
4291 4455 3.135167 AGCCTCTACTAGACTAGCTCGTT 59.865 47.826 9.52 0.00 0.00 3.85
4292 4456 3.249080 GCCTCTACTAGACTAGCTCGTTG 59.751 52.174 9.52 0.00 0.00 4.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.204418 GCTTGCAGGAAGGATGCC 58.796 61.111 0.00 0.00 43.18 4.40
1 2 1.379576 AGGCTTGCAGGAAGGATGC 60.380 57.895 0.00 0.00 44.11 3.91
2 3 0.750911 GGAGGCTTGCAGGAAGGATG 60.751 60.000 0.00 0.00 31.56 3.51
3 4 0.918310 AGGAGGCTTGCAGGAAGGAT 60.918 55.000 0.00 0.00 31.56 3.24
4 5 1.539869 AGGAGGCTTGCAGGAAGGA 60.540 57.895 0.00 0.00 31.56 3.36
5 6 1.378250 CAGGAGGCTTGCAGGAAGG 60.378 63.158 0.00 0.00 31.56 3.46
6 7 0.676151 GTCAGGAGGCTTGCAGGAAG 60.676 60.000 0.00 0.00 34.41 3.46
7 8 1.376466 GTCAGGAGGCTTGCAGGAA 59.624 57.895 0.00 0.00 0.00 3.36
8 9 1.842920 TGTCAGGAGGCTTGCAGGA 60.843 57.895 0.00 0.00 0.00 3.86
9 10 1.673665 GTGTCAGGAGGCTTGCAGG 60.674 63.158 0.00 0.00 0.00 4.85
10 11 0.250640 AAGTGTCAGGAGGCTTGCAG 60.251 55.000 0.00 0.00 0.00 4.41
11 12 0.535780 CAAGTGTCAGGAGGCTTGCA 60.536 55.000 0.00 0.00 33.14 4.08
12 13 1.239968 CCAAGTGTCAGGAGGCTTGC 61.240 60.000 0.00 0.00 37.56 4.01
13 14 1.239968 GCCAAGTGTCAGGAGGCTTG 61.240 60.000 0.00 0.00 42.01 4.01
14 15 1.073897 GCCAAGTGTCAGGAGGCTT 59.926 57.895 0.00 0.00 42.01 4.35
15 16 1.708993 TTGCCAAGTGTCAGGAGGCT 61.709 55.000 9.88 0.00 45.42 4.58
16 17 0.823356 TTTGCCAAGTGTCAGGAGGC 60.823 55.000 0.00 0.00 45.41 4.70
17 18 1.242076 CTTTGCCAAGTGTCAGGAGG 58.758 55.000 0.00 0.00 0.00 4.30
18 19 1.972872 ACTTTGCCAAGTGTCAGGAG 58.027 50.000 1.73 0.00 42.05 3.69
19 20 2.224523 CCTACTTTGCCAAGTGTCAGGA 60.225 50.000 13.20 0.00 43.54 3.86
20 21 2.154462 CCTACTTTGCCAAGTGTCAGG 58.846 52.381 13.20 8.29 43.54 3.86
21 22 3.070018 CTCCTACTTTGCCAAGTGTCAG 58.930 50.000 13.20 3.05 43.54 3.51
22 23 2.438021 ACTCCTACTTTGCCAAGTGTCA 59.562 45.455 13.20 0.00 43.54 3.58
23 24 3.127425 ACTCCTACTTTGCCAAGTGTC 57.873 47.619 13.20 0.00 43.54 3.67
24 25 3.136626 AGAACTCCTACTTTGCCAAGTGT 59.863 43.478 13.20 0.00 43.54 3.55
25 26 3.744660 AGAACTCCTACTTTGCCAAGTG 58.255 45.455 13.20 3.78 43.54 3.16
26 27 4.137543 CAAGAACTCCTACTTTGCCAAGT 58.862 43.478 8.41 8.41 45.73 3.16
27 28 3.057946 GCAAGAACTCCTACTTTGCCAAG 60.058 47.826 0.00 0.00 35.92 3.61
28 29 2.884639 GCAAGAACTCCTACTTTGCCAA 59.115 45.455 0.00 0.00 0.00 4.52
29 30 2.504367 GCAAGAACTCCTACTTTGCCA 58.496 47.619 0.00 0.00 0.00 4.92
30 31 1.813178 GGCAAGAACTCCTACTTTGCC 59.187 52.381 10.36 10.36 35.28 4.52
31 32 2.744741 GAGGCAAGAACTCCTACTTTGC 59.255 50.000 0.00 0.00 31.71 3.68
40 41 1.070758 TGTGTCAGGAGGCAAGAACTC 59.929 52.381 0.00 0.00 0.00 3.01
41 42 1.071385 CTGTGTCAGGAGGCAAGAACT 59.929 52.381 0.00 0.00 0.00 3.01
42 43 1.517242 CTGTGTCAGGAGGCAAGAAC 58.483 55.000 0.00 0.00 0.00 3.01
53 54 2.368875 ACTACCTCAAACCCTGTGTCAG 59.631 50.000 0.00 0.00 0.00 3.51
54 55 2.367567 GACTACCTCAAACCCTGTGTCA 59.632 50.000 0.00 0.00 0.00 3.58
55 56 2.633481 AGACTACCTCAAACCCTGTGTC 59.367 50.000 0.00 0.00 0.00 3.67
56 57 2.690840 AGACTACCTCAAACCCTGTGT 58.309 47.619 0.00 0.00 0.00 3.72
57 58 3.071023 TGAAGACTACCTCAAACCCTGTG 59.929 47.826 0.00 0.00 0.00 3.66
58 59 3.071167 GTGAAGACTACCTCAAACCCTGT 59.929 47.826 0.00 0.00 0.00 4.00
59 60 3.071023 TGTGAAGACTACCTCAAACCCTG 59.929 47.826 0.00 0.00 0.00 4.45
60 61 3.314693 TGTGAAGACTACCTCAAACCCT 58.685 45.455 0.00 0.00 0.00 4.34
61 62 3.764237 TGTGAAGACTACCTCAAACCC 57.236 47.619 0.00 0.00 0.00 4.11
62 63 5.531287 ACATTTGTGAAGACTACCTCAAACC 59.469 40.000 6.98 0.00 0.00 3.27
63 64 6.619801 ACATTTGTGAAGACTACCTCAAAC 57.380 37.500 6.98 0.00 0.00 2.93
75 76 9.935477 TATCCGAGATGGTCCACATTTGTGAAG 62.935 44.444 12.18 0.00 43.06 3.02
76 77 6.322509 TCCGAGATGGTCCACATTTGTGAA 62.323 45.833 12.18 0.00 43.06 3.18
77 78 4.887926 TCCGAGATGGTCCACATTTGTGA 61.888 47.826 12.18 0.00 43.06 3.58
78 79 1.739466 CCGAGATGGTCCACATTTGTG 59.261 52.381 3.67 3.67 45.23 3.33
79 80 1.628340 TCCGAGATGGTCCACATTTGT 59.372 47.619 0.00 0.00 40.72 2.83
80 81 2.401583 TCCGAGATGGTCCACATTTG 57.598 50.000 0.00 0.00 40.72 2.32
81 82 3.967326 TCTATCCGAGATGGTCCACATTT 59.033 43.478 0.00 0.00 40.72 2.32
82 83 3.576861 TCTATCCGAGATGGTCCACATT 58.423 45.455 0.00 0.00 40.72 2.71
83 84 3.244887 TCTATCCGAGATGGTCCACAT 57.755 47.619 0.00 0.00 44.18 3.21
84 85 2.748209 TCTATCCGAGATGGTCCACA 57.252 50.000 0.00 0.00 39.52 4.17
92 93 4.343231 AGCAGATGACATCTATCCGAGAT 58.657 43.478 17.54 0.52 46.52 2.75
93 94 3.760738 AGCAGATGACATCTATCCGAGA 58.239 45.455 17.54 0.00 37.58 4.04
94 95 4.096231 CCTAGCAGATGACATCTATCCGAG 59.904 50.000 17.54 13.12 37.58 4.63
95 96 4.013050 CCTAGCAGATGACATCTATCCGA 58.987 47.826 17.54 5.38 37.58 4.55
96 97 3.761218 ACCTAGCAGATGACATCTATCCG 59.239 47.826 17.54 6.87 37.58 4.18
97 98 5.949354 ACTACCTAGCAGATGACATCTATCC 59.051 44.000 17.54 9.24 37.58 2.59
98 99 8.746052 ATACTACCTAGCAGATGACATCTATC 57.254 38.462 17.54 12.16 37.58 2.08
99 100 7.777910 GGATACTACCTAGCAGATGACATCTAT 59.222 40.741 17.54 11.74 37.58 1.98
100 101 7.113437 GGATACTACCTAGCAGATGACATCTA 58.887 42.308 17.54 2.05 37.58 1.98
101 102 5.949354 GGATACTACCTAGCAGATGACATCT 59.051 44.000 12.37 12.37 41.15 2.90
102 103 5.126384 GGGATACTACCTAGCAGATGACATC 59.874 48.000 7.39 7.39 0.00 3.06
103 104 5.020132 GGGATACTACCTAGCAGATGACAT 58.980 45.833 0.00 0.00 0.00 3.06
104 105 4.106502 AGGGATACTACCTAGCAGATGACA 59.893 45.833 0.00 0.00 36.32 3.58
105 106 4.668636 AGGGATACTACCTAGCAGATGAC 58.331 47.826 0.00 0.00 36.32 3.06
106 107 5.080337 CAAGGGATACTACCTAGCAGATGA 58.920 45.833 0.00 0.00 37.35 2.92
107 108 4.835615 ACAAGGGATACTACCTAGCAGATG 59.164 45.833 0.00 0.00 37.35 2.90
108 109 5.081315 ACAAGGGATACTACCTAGCAGAT 57.919 43.478 0.00 0.00 37.35 2.90
109 110 4.537945 ACAAGGGATACTACCTAGCAGA 57.462 45.455 0.00 0.00 37.35 4.26
110 111 4.406003 ACAACAAGGGATACTACCTAGCAG 59.594 45.833 0.00 0.00 37.35 4.24
111 112 4.359105 ACAACAAGGGATACTACCTAGCA 58.641 43.478 0.00 0.00 37.35 3.49
112 113 5.597594 ACTACAACAAGGGATACTACCTAGC 59.402 44.000 0.00 0.00 37.35 3.42
113 114 6.040616 CCACTACAACAAGGGATACTACCTAG 59.959 46.154 0.00 0.00 37.35 3.02
114 115 5.895534 CCACTACAACAAGGGATACTACCTA 59.104 44.000 0.00 0.00 37.35 3.08
115 116 4.715297 CCACTACAACAAGGGATACTACCT 59.285 45.833 0.00 0.00 40.96 3.08
116 117 4.682589 GCCACTACAACAAGGGATACTACC 60.683 50.000 0.00 0.00 0.00 3.18
117 118 4.439968 GCCACTACAACAAGGGATACTAC 58.560 47.826 0.00 0.00 0.00 2.73
118 119 3.131577 CGCCACTACAACAAGGGATACTA 59.868 47.826 0.00 0.00 0.00 1.82
119 120 2.093658 CGCCACTACAACAAGGGATACT 60.094 50.000 0.00 0.00 0.00 2.12
120 121 2.277084 CGCCACTACAACAAGGGATAC 58.723 52.381 0.00 0.00 0.00 2.24
121 122 1.903860 ACGCCACTACAACAAGGGATA 59.096 47.619 0.00 0.00 0.00 2.59
122 123 0.690762 ACGCCACTACAACAAGGGAT 59.309 50.000 0.00 0.00 0.00 3.85
123 124 0.034337 GACGCCACTACAACAAGGGA 59.966 55.000 0.00 0.00 0.00 4.20
124 125 0.953960 GGACGCCACTACAACAAGGG 60.954 60.000 0.00 0.00 0.00 3.95
125 126 0.250124 TGGACGCCACTACAACAAGG 60.250 55.000 0.00 0.00 0.00 3.61
126 127 1.808411 ATGGACGCCACTACAACAAG 58.192 50.000 0.50 0.00 35.80 3.16
127 128 1.876799 CAATGGACGCCACTACAACAA 59.123 47.619 0.50 0.00 35.80 2.83
128 129 1.070914 TCAATGGACGCCACTACAACA 59.929 47.619 0.50 0.00 35.80 3.33
129 130 1.463444 GTCAATGGACGCCACTACAAC 59.537 52.381 0.50 0.00 35.80 3.32
130 131 1.609580 GGTCAATGGACGCCACTACAA 60.610 52.381 0.50 0.00 45.28 2.41
131 132 0.036765 GGTCAATGGACGCCACTACA 60.037 55.000 0.50 0.00 45.28 2.74
132 133 0.249398 AGGTCAATGGACGCCACTAC 59.751 55.000 0.50 0.91 45.28 2.73
133 134 0.535335 GAGGTCAATGGACGCCACTA 59.465 55.000 0.50 0.00 45.28 2.74
134 135 1.296715 GAGGTCAATGGACGCCACT 59.703 57.895 0.50 0.00 45.28 4.00
135 136 2.100631 CGAGGTCAATGGACGCCAC 61.101 63.158 0.50 0.00 45.28 5.01
136 137 1.822114 TTCGAGGTCAATGGACGCCA 61.822 55.000 1.01 1.01 45.28 5.69
137 138 1.079405 TTCGAGGTCAATGGACGCC 60.079 57.895 0.00 0.00 45.28 5.68
138 139 0.389948 ACTTCGAGGTCAATGGACGC 60.390 55.000 0.00 0.00 45.28 5.19
139 140 1.993370 GAACTTCGAGGTCAATGGACG 59.007 52.381 0.00 0.00 45.28 4.79
140 141 2.737252 GTGAACTTCGAGGTCAATGGAC 59.263 50.000 0.00 0.00 44.64 4.02
141 142 2.289444 GGTGAACTTCGAGGTCAATGGA 60.289 50.000 0.00 0.00 44.64 3.41
142 143 2.076863 GGTGAACTTCGAGGTCAATGG 58.923 52.381 0.00 0.00 44.64 3.16
143 144 1.726791 CGGTGAACTTCGAGGTCAATG 59.273 52.381 0.00 0.00 44.64 2.82
144 145 1.337823 CCGGTGAACTTCGAGGTCAAT 60.338 52.381 0.00 0.00 44.64 2.57
145 146 0.032952 CCGGTGAACTTCGAGGTCAA 59.967 55.000 0.00 0.00 44.64 3.18
146 147 0.824595 TCCGGTGAACTTCGAGGTCA 60.825 55.000 0.00 0.00 40.14 4.02
147 148 0.109226 CTCCGGTGAACTTCGAGGTC 60.109 60.000 0.00 0.00 31.00 3.85
148 149 1.533469 CCTCCGGTGAACTTCGAGGT 61.533 60.000 4.76 0.00 0.00 3.85
149 150 1.215647 CCTCCGGTGAACTTCGAGG 59.784 63.158 4.76 0.00 0.00 4.63
150 151 0.171455 CTCCTCCGGTGAACTTCGAG 59.829 60.000 4.76 0.00 0.00 4.04
151 152 1.874345 GCTCCTCCGGTGAACTTCGA 61.874 60.000 4.76 0.00 0.00 3.71
152 153 1.446272 GCTCCTCCGGTGAACTTCG 60.446 63.158 4.76 0.00 0.00 3.79
153 154 0.250513 ATGCTCCTCCGGTGAACTTC 59.749 55.000 4.76 0.00 0.00 3.01
154 155 0.036010 CATGCTCCTCCGGTGAACTT 60.036 55.000 4.76 0.00 0.00 2.66
155 156 0.904865 TCATGCTCCTCCGGTGAACT 60.905 55.000 4.76 0.00 0.00 3.01
156 157 0.741221 GTCATGCTCCTCCGGTGAAC 60.741 60.000 4.76 0.00 0.00 3.18
157 158 1.596934 GTCATGCTCCTCCGGTGAA 59.403 57.895 4.76 0.00 0.00 3.18
158 159 2.359169 GGTCATGCTCCTCCGGTGA 61.359 63.158 4.76 0.31 0.00 4.02
159 160 1.903877 AAGGTCATGCTCCTCCGGTG 61.904 60.000 0.00 0.00 33.76 4.94
160 161 1.613630 AAGGTCATGCTCCTCCGGT 60.614 57.895 0.00 0.00 33.76 5.28
161 162 1.144936 GAAGGTCATGCTCCTCCGG 59.855 63.158 0.00 0.00 33.76 5.14
162 163 0.250234 TTGAAGGTCATGCTCCTCCG 59.750 55.000 9.18 0.00 33.76 4.63
163 164 1.003580 TGTTGAAGGTCATGCTCCTCC 59.996 52.381 9.18 0.00 33.76 4.30
164 165 2.479566 TGTTGAAGGTCATGCTCCTC 57.520 50.000 9.18 5.14 33.76 3.71
165 166 2.787994 CTTGTTGAAGGTCATGCTCCT 58.212 47.619 3.89 3.89 36.81 3.69
166 167 1.200948 GCTTGTTGAAGGTCATGCTCC 59.799 52.381 0.00 0.00 33.79 4.70
167 168 2.157738 AGCTTGTTGAAGGTCATGCTC 58.842 47.619 0.00 0.00 39.63 4.26
168 169 2.283145 AGCTTGTTGAAGGTCATGCT 57.717 45.000 0.00 0.00 34.78 3.79
169 170 2.608752 CCAAGCTTGTTGAAGGTCATGC 60.609 50.000 24.35 0.00 39.03 4.06
170 171 2.608752 GCCAAGCTTGTTGAAGGTCATG 60.609 50.000 24.35 6.17 39.03 3.07
171 172 1.615392 GCCAAGCTTGTTGAAGGTCAT 59.385 47.619 24.35 0.00 39.03 3.06
172 173 1.032014 GCCAAGCTTGTTGAAGGTCA 58.968 50.000 24.35 0.00 39.03 4.02
173 174 0.040067 CGCCAAGCTTGTTGAAGGTC 60.040 55.000 24.35 4.55 39.03 3.85
174 175 2.032981 CGCCAAGCTTGTTGAAGGT 58.967 52.632 24.35 0.00 41.82 3.50
175 176 1.372128 GCGCCAAGCTTGTTGAAGG 60.372 57.895 24.35 9.68 44.04 3.46
176 177 4.233408 GCGCCAAGCTTGTTGAAG 57.767 55.556 24.35 10.22 44.04 3.02
217 218 3.047280 GCCGTTGGATGCGTCACA 61.047 61.111 8.47 0.51 0.00 3.58
242 243 5.761234 TGAACAGTGCCGAAATAGTAAGTTT 59.239 36.000 0.00 0.00 0.00 2.66
279 280 1.539827 GAAGCGGCATAACAAAGGTGT 59.460 47.619 1.45 0.00 40.75 4.16
287 288 1.680338 AATGGGAGAAGCGGCATAAC 58.320 50.000 1.45 0.00 0.00 1.89
313 320 1.588674 TGCAGTCCACGGTAAAAGTG 58.411 50.000 0.00 0.00 39.19 3.16
378 393 1.885157 CTCGTGTTTGCCATGCCAT 59.115 52.632 0.00 0.00 0.00 4.40
387 402 2.991190 ACCGTATTACTGCTCGTGTTTG 59.009 45.455 0.00 0.00 0.00 2.93
399 414 3.061697 CGGAGCTGTCAAAACCGTATTAC 59.938 47.826 0.00 0.00 38.97 1.89
404 419 4.043168 CGGAGCTGTCAAAACCGT 57.957 55.556 0.00 0.00 38.97 4.83
454 469 9.358872 CTTTATGTTTTCTCCATTTTTAGCCTC 57.641 33.333 0.00 0.00 0.00 4.70
541 557 2.266055 CTGGAGAGACGGGGCAAC 59.734 66.667 0.00 0.00 0.00 4.17
560 576 1.611977 GAAAGAAGGGGTTGAAACGGG 59.388 52.381 0.00 0.00 0.00 5.28
592 608 0.948678 TTTTCCCCTGTTCTTTCGCG 59.051 50.000 0.00 0.00 0.00 5.87
705 722 7.894376 ATGCAAAACCAGATTTCATGTAAAG 57.106 32.000 0.00 0.00 0.00 1.85
751 814 2.906161 CGACGTAAATTCCCGCAAAAAG 59.094 45.455 0.00 0.00 0.00 2.27
924 988 2.297895 CCCGGTGAAGATGACCCCA 61.298 63.158 0.00 0.00 0.00 4.96
925 989 1.559065 TTCCCGGTGAAGATGACCCC 61.559 60.000 0.00 0.00 0.00 4.95
926 990 1.988015 TTCCCGGTGAAGATGACCC 59.012 57.895 0.00 0.00 0.00 4.46
1076 1140 3.341043 CATCCGAATCTGCCGCCG 61.341 66.667 0.00 0.00 0.00 6.46
1077 1141 2.974698 CCATCCGAATCTGCCGCC 60.975 66.667 0.00 0.00 0.00 6.13
1107 1171 0.536687 TATCCGAAGCTCCCGACGAT 60.537 55.000 9.67 7.46 0.00 3.73
1118 1182 0.744874 TTCACCCGAGCTATCCGAAG 59.255 55.000 0.00 0.00 0.00 3.79
1136 1200 0.314302 GGATCCCGATGACGACGATT 59.686 55.000 0.00 0.00 42.66 3.34
1171 1235 3.124921 CGTGGACGATTGTGGGCC 61.125 66.667 0.00 0.00 43.02 5.80
1534 1646 2.892301 GCCTCTTCTTCTTCCTCCTCCT 60.892 54.545 0.00 0.00 0.00 3.69
1535 1647 1.484653 GCCTCTTCTTCTTCCTCCTCC 59.515 57.143 0.00 0.00 0.00 4.30
1536 1648 1.484653 GGCCTCTTCTTCTTCCTCCTC 59.515 57.143 0.00 0.00 0.00 3.71
1647 1763 4.569966 GTCACAGTTAGATCTCTGCCAATG 59.430 45.833 10.56 3.32 35.37 2.82
1648 1764 4.383552 GGTCACAGTTAGATCTCTGCCAAT 60.384 45.833 10.56 0.00 35.37 3.16
2111 2227 2.707849 GCAGTAGCCGACGAGGGAA 61.708 63.158 0.00 0.00 41.48 3.97
2191 2307 2.671070 CCTTGCCGTGGAGATGGT 59.329 61.111 0.00 0.00 0.00 3.55
2211 2327 2.436646 CCAGTCCATGACCGGCAC 60.437 66.667 0.00 0.00 32.18 5.01
2230 2346 2.796651 CAATGGCGAGCCTCTTGC 59.203 61.111 15.75 0.00 39.96 4.01
2270 2386 0.526211 AGTCTTCGTGCAGATACGCA 59.474 50.000 0.00 0.00 43.40 5.24
2276 2392 3.728076 AACTTACAGTCTTCGTGCAGA 57.272 42.857 0.00 0.00 0.00 4.26
2304 2420 2.041485 TGGATTGATGTGGCCAGAAGAA 59.959 45.455 5.11 1.88 0.00 2.52
2320 2439 0.960364 AAGCACGAACGCCATGGATT 60.960 50.000 18.40 8.88 0.00 3.01
2461 2583 3.552604 TCTTACAAATTTCGCTGCACC 57.447 42.857 0.00 0.00 0.00 5.01
2467 2589 5.938322 TCACTCCAATCTTACAAATTTCGC 58.062 37.500 0.00 0.00 0.00 4.70
2533 2656 0.179094 TGTTGTCCGTCGTCAGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
2537 2660 0.575390 GTGTTGTTGTCCGTCGTCAG 59.425 55.000 0.00 0.00 0.00 3.51
2686 2814 3.760035 AGGTACCTGCACGAGCCG 61.760 66.667 15.42 0.00 41.13 5.52
2883 3015 1.529948 TCCACCACCTCGTCGAAGT 60.530 57.895 0.00 0.00 0.00 3.01
2904 3036 1.080093 TACTTGTTCTCCAGGCGCG 60.080 57.895 0.00 0.00 0.00 6.86
3033 3181 1.227556 AGTTCACGGCGAGTTGCTT 60.228 52.632 16.62 0.00 45.43 3.91
3076 3224 1.013323 CAGCGCGCGAACAATCTAC 60.013 57.895 37.18 12.54 0.00 2.59
3077 3225 2.164663 CCAGCGCGCGAACAATCTA 61.165 57.895 37.18 0.00 0.00 1.98
3209 3357 1.011019 CGCTACTCTCGAACGCGAT 60.011 57.895 15.93 0.00 46.80 4.58
3291 3439 2.704065 TCCTCGAAGGGGATTAATGGTC 59.296 50.000 0.00 0.00 35.59 4.02
3327 3475 3.063997 CGGCCAACTTACATCACAGATTC 59.936 47.826 2.24 0.00 0.00 2.52
3328 3476 3.009723 CGGCCAACTTACATCACAGATT 58.990 45.455 2.24 0.00 0.00 2.40
3377 3530 2.522185 ACCACAGTGTACACCTCGTAT 58.478 47.619 22.28 6.65 31.20 3.06
3393 3552 4.637534 AGCAGTTACATCATCATCAACCAC 59.362 41.667 0.00 0.00 0.00 4.16
3541 3702 5.335426 GGATGCTCTAACAATGCCACATATG 60.335 44.000 0.00 0.00 0.00 1.78
3658 3822 1.668419 ATCTAGCGCACAACCCAATC 58.332 50.000 11.47 0.00 0.00 2.67
3664 3828 2.993899 ACAGTACAATCTAGCGCACAAC 59.006 45.455 11.47 0.00 0.00 3.32
3666 3830 2.606108 CACAGTACAATCTAGCGCACA 58.394 47.619 11.47 0.00 0.00 4.57
3669 3833 1.640428 TGCACAGTACAATCTAGCGC 58.360 50.000 0.00 0.00 0.00 5.92
3680 3844 7.486870 CGACTATAAAGTGTACAATGCACAGTA 59.513 37.037 0.00 0.00 39.17 2.74
3682 3846 6.237835 CCGACTATAAAGTGTACAATGCACAG 60.238 42.308 0.00 0.00 39.17 3.66
3689 3853 5.878332 TCGACCGACTATAAAGTGTACAA 57.122 39.130 0.00 0.00 35.56 2.41
3727 3891 6.539464 CACGCATTAAGGTTAACCCTAATACA 59.461 38.462 22.52 2.23 45.47 2.29
3731 3895 4.696402 CACACGCATTAAGGTTAACCCTAA 59.304 41.667 21.30 18.56 45.47 2.69
3757 3921 0.881796 GGCAGCTAGGGTTTGTGTTC 59.118 55.000 0.00 0.00 0.00 3.18
3777 3941 0.955905 GATCTAGGTCGAGGGAGTGC 59.044 60.000 0.00 0.00 0.00 4.40
3787 3951 2.355244 GCAGGCGCGATCTAGGTC 60.355 66.667 12.10 0.00 0.00 3.85
3801 3965 1.142748 CAGGGTTCTAGCTCCGCAG 59.857 63.158 0.00 0.00 0.00 5.18
3829 3993 7.607991 GGTATCCACATGTATAAGGATTTGAGG 59.392 40.741 17.80 2.72 41.03 3.86
3837 4001 6.043243 ACTCCAAGGTATCCACATGTATAAGG 59.957 42.308 0.00 0.00 0.00 2.69
3841 4005 5.975988 AACTCCAAGGTATCCACATGTAT 57.024 39.130 0.00 0.00 0.00 2.29
3872 4036 0.958091 TGATTTTCCCAAGCACCACG 59.042 50.000 0.00 0.00 0.00 4.94
3874 4038 3.237746 TGAATGATTTTCCCAAGCACCA 58.762 40.909 0.00 0.00 0.00 4.17
3885 4049 7.768643 TCCTACCATATCCCATGAATGATTTT 58.231 34.615 0.00 0.00 0.00 1.82
3886 4050 7.018952 ACTCCTACCATATCCCATGAATGATTT 59.981 37.037 0.00 0.00 0.00 2.17
3890 4054 5.768980 ACTCCTACCATATCCCATGAATG 57.231 43.478 0.00 0.00 0.00 2.67
3891 4055 5.612688 ACAACTCCTACCATATCCCATGAAT 59.387 40.000 0.00 0.00 0.00 2.57
3902 4066 1.829222 CCCACGTACAACTCCTACCAT 59.171 52.381 0.00 0.00 0.00 3.55
3933 4097 1.273606 CCGATGTTGTCACACTCCTCT 59.726 52.381 0.00 0.00 35.03 3.69
3946 4110 0.099259 CATGCGTCAATGCCGATGTT 59.901 50.000 0.00 0.00 0.00 2.71
3988 4152 1.789464 GAATTACCTCTCGATGCGCAG 59.211 52.381 18.32 2.56 0.00 5.18
3997 4161 3.845781 TGGAGCCATGAATTACCTCTC 57.154 47.619 0.00 0.00 0.00 3.20
4020 4184 5.024785 AGGAAATCCTGGAAGTAATCGAC 57.975 43.478 0.00 0.00 46.55 4.20
4043 4207 3.904339 ACCTATTCTACCGCATTCATCCT 59.096 43.478 0.00 0.00 0.00 3.24
4048 4212 3.069729 ACCTGACCTATTCTACCGCATTC 59.930 47.826 0.00 0.00 0.00 2.67
4061 4225 2.889512 TCTGCTTTCTCACCTGACCTA 58.110 47.619 0.00 0.00 0.00 3.08
4062 4226 1.722034 TCTGCTTTCTCACCTGACCT 58.278 50.000 0.00 0.00 0.00 3.85
4063 4227 2.421619 CTTCTGCTTTCTCACCTGACC 58.578 52.381 0.00 0.00 0.00 4.02
4064 4228 2.421619 CCTTCTGCTTTCTCACCTGAC 58.578 52.381 0.00 0.00 0.00 3.51
4065 4229 1.271054 GCCTTCTGCTTTCTCACCTGA 60.271 52.381 0.00 0.00 36.87 3.86
4066 4230 1.163554 GCCTTCTGCTTTCTCACCTG 58.836 55.000 0.00 0.00 36.87 4.00
4067 4231 0.767375 TGCCTTCTGCTTTCTCACCT 59.233 50.000 0.00 0.00 42.00 4.00
4068 4232 0.877743 GTGCCTTCTGCTTTCTCACC 59.122 55.000 0.00 0.00 42.00 4.02
4069 4233 0.877743 GGTGCCTTCTGCTTTCTCAC 59.122 55.000 0.00 0.00 42.00 3.51
4070 4234 0.767375 AGGTGCCTTCTGCTTTCTCA 59.233 50.000 0.00 0.00 42.00 3.27
4071 4235 2.027653 AGTAGGTGCCTTCTGCTTTCTC 60.028 50.000 0.00 0.00 42.00 2.87
4072 4236 1.981495 AGTAGGTGCCTTCTGCTTTCT 59.019 47.619 0.00 0.00 42.00 2.52
4073 4237 2.351455 GAGTAGGTGCCTTCTGCTTTC 58.649 52.381 2.02 0.00 42.00 2.62
4074 4238 1.003696 GGAGTAGGTGCCTTCTGCTTT 59.996 52.381 8.65 0.00 42.00 3.51
4075 4239 0.615850 GGAGTAGGTGCCTTCTGCTT 59.384 55.000 8.65 0.00 42.00 3.91
4076 4240 1.608717 CGGAGTAGGTGCCTTCTGCT 61.609 60.000 12.76 0.96 42.00 4.24
4077 4241 1.153549 CGGAGTAGGTGCCTTCTGC 60.154 63.158 2.02 4.41 41.77 4.26
4078 4242 0.895530 TTCGGAGTAGGTGCCTTCTG 59.104 55.000 2.02 0.00 0.00 3.02
4079 4243 1.187087 CTTCGGAGTAGGTGCCTTCT 58.813 55.000 0.00 0.00 0.00 2.85
4080 4244 0.175989 CCTTCGGAGTAGGTGCCTTC 59.824 60.000 0.00 0.00 0.00 3.46
4081 4245 1.900545 GCCTTCGGAGTAGGTGCCTT 61.901 60.000 0.00 0.00 35.13 4.35
4082 4246 2.359967 GCCTTCGGAGTAGGTGCCT 61.360 63.158 0.00 0.00 35.13 4.75
4083 4247 1.972660 ATGCCTTCGGAGTAGGTGCC 61.973 60.000 0.00 0.00 35.13 5.01
4084 4248 0.530870 GATGCCTTCGGAGTAGGTGC 60.531 60.000 0.00 0.00 35.13 5.01
4085 4249 0.105039 GGATGCCTTCGGAGTAGGTG 59.895 60.000 0.00 0.00 35.13 4.00
4086 4250 1.049289 GGGATGCCTTCGGAGTAGGT 61.049 60.000 0.00 0.00 35.13 3.08
4087 4251 1.749033 GGGATGCCTTCGGAGTAGG 59.251 63.158 0.00 0.00 35.80 3.18
4088 4252 1.749033 GGGGATGCCTTCGGAGTAG 59.251 63.158 2.19 0.00 0.00 2.57
4089 4253 1.764854 GGGGGATGCCTTCGGAGTA 60.765 63.158 2.19 0.00 0.00 2.59
4090 4254 3.090532 GGGGGATGCCTTCGGAGT 61.091 66.667 2.19 0.00 0.00 3.85
4104 4268 1.352352 CCATCAAGTGGCTATAGGGGG 59.648 57.143 1.04 0.00 42.12 5.40
4105 4269 2.867109 CCATCAAGTGGCTATAGGGG 57.133 55.000 1.04 0.00 42.12 4.79
4115 4279 5.624159 TCTAGGGCATATTTCCATCAAGTG 58.376 41.667 0.00 0.00 0.00 3.16
4116 4280 5.222007 CCTCTAGGGCATATTTCCATCAAGT 60.222 44.000 0.00 0.00 0.00 3.16
4117 4281 5.222007 ACCTCTAGGGCATATTTCCATCAAG 60.222 44.000 0.20 0.00 40.27 3.02
4118 4282 4.665009 ACCTCTAGGGCATATTTCCATCAA 59.335 41.667 0.20 0.00 40.27 2.57
4119 4283 4.242811 ACCTCTAGGGCATATTTCCATCA 58.757 43.478 0.20 0.00 40.27 3.07
4120 4284 4.917906 ACCTCTAGGGCATATTTCCATC 57.082 45.455 0.20 0.00 40.27 3.51
4121 4285 6.977244 ATTACCTCTAGGGCATATTTCCAT 57.023 37.500 0.20 0.00 40.27 3.41
4122 4286 7.881912 TTATTACCTCTAGGGCATATTTCCA 57.118 36.000 0.20 0.00 40.27 3.53
4129 4293 8.678798 ACCATTTTATTATTACCTCTAGGGCAT 58.321 33.333 0.20 0.00 40.27 4.40
4130 4294 8.052621 ACCATTTTATTATTACCTCTAGGGCA 57.947 34.615 0.20 0.00 40.27 5.36
4131 4295 8.935614 AACCATTTTATTATTACCTCTAGGGC 57.064 34.615 0.20 0.00 40.27 5.19
4176 4340 9.797642 AGCATGAATAATAAACCTGTATCATGA 57.202 29.630 14.58 0.00 34.83 3.07
4192 4356 8.773645 CGGTCAATACAATTCTAGCATGAATAA 58.226 33.333 0.00 0.00 35.82 1.40
4193 4357 7.387673 CCGGTCAATACAATTCTAGCATGAATA 59.612 37.037 0.00 0.00 35.82 1.75
4194 4358 6.205464 CCGGTCAATACAATTCTAGCATGAAT 59.795 38.462 0.00 0.00 38.19 2.57
4195 4359 5.527214 CCGGTCAATACAATTCTAGCATGAA 59.473 40.000 0.00 0.00 0.00 2.57
4196 4360 5.056480 CCGGTCAATACAATTCTAGCATGA 58.944 41.667 0.00 0.00 0.00 3.07
4197 4361 5.056480 TCCGGTCAATACAATTCTAGCATG 58.944 41.667 0.00 0.00 0.00 4.06
4198 4362 5.290493 TCCGGTCAATACAATTCTAGCAT 57.710 39.130 0.00 0.00 0.00 3.79
4199 4363 4.746535 TCCGGTCAATACAATTCTAGCA 57.253 40.909 0.00 0.00 0.00 3.49
4200 4364 6.431198 TTTTCCGGTCAATACAATTCTAGC 57.569 37.500 0.00 0.00 0.00 3.42
4213 4377 8.625651 CCACATATGTATTTAATTTTCCGGTCA 58.374 33.333 8.32 0.00 0.00 4.02
4214 4378 8.842280 TCCACATATGTATTTAATTTTCCGGTC 58.158 33.333 8.32 0.00 0.00 4.79
4215 4379 8.754991 TCCACATATGTATTTAATTTTCCGGT 57.245 30.769 8.32 0.00 0.00 5.28
4235 4399 8.725405 ACACGATATTTGTTTATGTATCCACA 57.275 30.769 0.00 0.00 39.52 4.17
4236 4400 8.280497 GGACACGATATTTGTTTATGTATCCAC 58.720 37.037 0.00 0.00 0.00 4.02
4237 4401 7.442969 GGGACACGATATTTGTTTATGTATCCA 59.557 37.037 0.00 0.00 0.00 3.41
4238 4402 7.660208 AGGGACACGATATTTGTTTATGTATCC 59.340 37.037 0.00 0.00 0.00 2.59
4239 4403 8.603242 AGGGACACGATATTTGTTTATGTATC 57.397 34.615 0.00 0.00 0.00 2.24
4242 4406 8.836413 CATTAGGGACACGATATTTGTTTATGT 58.164 33.333 0.00 0.00 0.00 2.29
4243 4407 9.051679 TCATTAGGGACACGATATTTGTTTATG 57.948 33.333 0.00 0.00 0.00 1.90
4244 4408 9.273016 CTCATTAGGGACACGATATTTGTTTAT 57.727 33.333 0.00 0.00 0.00 1.40
4245 4409 7.225931 GCTCATTAGGGACACGATATTTGTTTA 59.774 37.037 0.00 0.00 0.00 2.01
4246 4410 6.038271 GCTCATTAGGGACACGATATTTGTTT 59.962 38.462 0.00 0.00 0.00 2.83
4247 4411 5.527582 GCTCATTAGGGACACGATATTTGTT 59.472 40.000 0.00 0.00 0.00 2.83
4248 4412 5.057149 GCTCATTAGGGACACGATATTTGT 58.943 41.667 0.00 0.00 0.00 2.83
4249 4413 4.452455 GGCTCATTAGGGACACGATATTTG 59.548 45.833 0.00 0.00 0.00 2.32
4250 4414 4.348168 AGGCTCATTAGGGACACGATATTT 59.652 41.667 0.00 0.00 0.00 1.40
4251 4415 3.904339 AGGCTCATTAGGGACACGATATT 59.096 43.478 0.00 0.00 0.00 1.28
4252 4416 3.511477 AGGCTCATTAGGGACACGATAT 58.489 45.455 0.00 0.00 0.00 1.63
4253 4417 2.891580 GAGGCTCATTAGGGACACGATA 59.108 50.000 10.25 0.00 0.00 2.92
4254 4418 1.689273 GAGGCTCATTAGGGACACGAT 59.311 52.381 10.25 0.00 0.00 3.73
4255 4419 1.112113 GAGGCTCATTAGGGACACGA 58.888 55.000 10.25 0.00 0.00 4.35
4256 4420 1.115467 AGAGGCTCATTAGGGACACG 58.885 55.000 18.26 0.00 0.00 4.49
4257 4421 3.301274 AGTAGAGGCTCATTAGGGACAC 58.699 50.000 18.26 0.42 0.00 3.67
4258 4422 3.689872 AGTAGAGGCTCATTAGGGACA 57.310 47.619 18.26 0.00 0.00 4.02
4259 4423 4.763279 GTCTAGTAGAGGCTCATTAGGGAC 59.237 50.000 18.26 12.80 0.00 4.46
4260 4424 4.665957 AGTCTAGTAGAGGCTCATTAGGGA 59.334 45.833 18.26 4.77 33.67 4.20
4261 4425 4.993028 AGTCTAGTAGAGGCTCATTAGGG 58.007 47.826 18.26 2.38 33.67 3.53
4262 4426 5.646360 GCTAGTCTAGTAGAGGCTCATTAGG 59.354 48.000 18.26 3.99 40.19 2.69
4263 4427 6.472887 AGCTAGTCTAGTAGAGGCTCATTAG 58.527 44.000 18.26 14.11 40.19 1.73
4264 4428 6.442541 AGCTAGTCTAGTAGAGGCTCATTA 57.557 41.667 18.26 4.98 40.19 1.90
4265 4429 5.313712 GAGCTAGTCTAGTAGAGGCTCATT 58.686 45.833 27.27 3.98 40.19 2.57
4266 4430 4.562757 CGAGCTAGTCTAGTAGAGGCTCAT 60.563 50.000 29.12 4.69 40.19 2.90
4267 4431 3.243941 CGAGCTAGTCTAGTAGAGGCTCA 60.244 52.174 29.12 0.00 40.19 4.26
4268 4432 3.243975 ACGAGCTAGTCTAGTAGAGGCTC 60.244 52.174 24.85 24.85 40.19 4.70
4269 4433 2.701951 ACGAGCTAGTCTAGTAGAGGCT 59.298 50.000 17.02 17.02 44.48 4.58
4270 4434 3.116079 ACGAGCTAGTCTAGTAGAGGC 57.884 52.381 8.68 5.92 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.