Multiple sequence alignment - TraesCS4B01G233300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G233300 chr4B 100.000 6044 0 0 1 6044 484769048 484775091 0.000000e+00 11162.0
1 TraesCS4B01G233300 chr4B 85.841 226 26 3 358 581 579404984 579405205 1.010000e-57 235.0
2 TraesCS4B01G233300 chr4B 80.000 320 45 9 362 672 7839413 7839104 1.020000e-52 219.0
3 TraesCS4B01G233300 chr4B 94.737 95 5 0 2687 2781 525796144 525796050 1.360000e-31 148.0
4 TraesCS4B01G233300 chr4D 94.411 3113 111 17 2864 5951 394487490 394490564 0.000000e+00 4726.0
5 TraesCS4B01G233300 chr4D 95.290 1274 48 9 1416 2689 394485962 394487223 0.000000e+00 2010.0
6 TraesCS4B01G233300 chr4D 90.828 785 32 16 673 1423 394485026 394485804 0.000000e+00 1014.0
7 TraesCS4B01G233300 chr4D 89.732 224 18 2 358 581 370533087 370532869 1.280000e-71 281.0
8 TraesCS4B01G233300 chr4D 87.649 251 18 3 105 355 394481691 394481928 4.610000e-71 279.0
9 TraesCS4B01G233300 chr4D 87.179 234 13 5 105 334 394484792 394485012 3.620000e-62 250.0
10 TraesCS4B01G233300 chr4D 95.000 100 4 1 2685 2783 453135399 453135300 8.110000e-34 156.0
11 TraesCS4B01G233300 chr4D 90.323 93 3 3 5956 6044 426619709 426619619 3.830000e-22 117.0
12 TraesCS4B01G233300 chr4A 94.517 2298 99 15 2837 5130 75970690 75972964 0.000000e+00 3520.0
13 TraesCS4B01G233300 chr4A 89.615 2051 102 39 673 2689 75968558 75970531 0.000000e+00 2505.0
14 TraesCS4B01G233300 chr4A 87.162 296 19 6 5405 5681 75973176 75973471 9.780000e-83 318.0
15 TraesCS4B01G233300 chr4A 92.627 217 14 1 5160 5376 75972963 75973177 1.640000e-80 311.0
16 TraesCS4B01G233300 chr6B 84.906 318 42 4 358 674 680131655 680131343 3.520000e-82 316.0
17 TraesCS4B01G233300 chr1D 91.192 193 16 1 480 672 365303999 365303808 1.670000e-65 261.0
18 TraesCS4B01G233300 chr1D 93.939 99 5 1 574 672 43196195 43196292 1.360000e-31 148.0
19 TraesCS4B01G233300 chr1D 88.618 123 11 3 2692 2813 238693876 238693756 4.880000e-31 147.0
20 TraesCS4B01G233300 chr5A 89.756 205 17 1 359 563 701968843 701968643 6.010000e-65 259.0
21 TraesCS4B01G233300 chr5A 95.833 96 3 1 2688 2783 6483788 6483694 2.920000e-33 154.0
22 TraesCS4B01G233300 chr5A 93.137 102 5 2 2683 2782 90668444 90668343 1.360000e-31 148.0
23 TraesCS4B01G233300 chr3D 87.500 224 24 1 358 581 505421084 505420865 7.770000e-64 255.0
24 TraesCS4B01G233300 chr7A 87.500 224 23 2 358 581 710728567 710728349 2.800000e-63 254.0
25 TraesCS4B01G233300 chr2A 87.500 224 23 2 358 581 615744261 615744043 2.800000e-63 254.0
26 TraesCS4B01G233300 chr2A 93.939 99 6 0 2684 2782 582639959 582640057 3.770000e-32 150.0
27 TraesCS4B01G233300 chr2A 91.176 102 8 1 571 672 723124923 723125023 2.940000e-28 137.0
28 TraesCS4B01G233300 chr2A 80.000 195 31 6 478 672 726204232 726204418 2.940000e-28 137.0
29 TraesCS4B01G233300 chr7D 87.054 224 25 1 358 581 53333425 53333644 3.620000e-62 250.0
30 TraesCS4B01G233300 chr7D 91.818 110 6 2 2688 2794 519264630 519264521 3.770000e-32 150.0
31 TraesCS4B01G233300 chr2D 87.054 224 24 2 358 581 21060539 21060321 1.300000e-61 248.0
32 TraesCS4B01G233300 chr2D 91.176 102 8 1 574 675 77421342 77421242 2.940000e-28 137.0
33 TraesCS4B01G233300 chr2D 92.222 90 1 3 5956 6041 78679765 78679852 8.230000e-24 122.0
34 TraesCS4B01G233300 chr2D 88.542 96 5 3 5953 6044 65530557 65530464 1.780000e-20 111.0
35 TraesCS4B01G233300 chr6D 88.166 169 19 1 504 672 456802994 456802827 3.690000e-47 200.0
36 TraesCS4B01G233300 chr3A 92.593 108 6 2 2675 2781 499556211 499556317 2.920000e-33 154.0
37 TraesCS4B01G233300 chr3A 94.737 57 1 2 5956 6012 738730349 738730403 3.000000e-13 87.9
38 TraesCS4B01G233300 chr2B 94.737 95 5 0 2687 2781 95449801 95449707 1.360000e-31 148.0
39 TraesCS4B01G233300 chr6A 83.544 158 19 3 516 673 572485169 572485019 2.270000e-29 141.0
40 TraesCS4B01G233300 chr5D 94.286 70 2 2 5957 6026 410442356 410442289 8.280000e-19 106.0
41 TraesCS4B01G233300 chr5D 91.304 69 6 0 5395 5463 123500146 123500078 1.790000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G233300 chr4B 484769048 484775091 6043 False 11162.0 11162 100.00000 1 6044 1 chr4B.!!$F1 6043
1 TraesCS4B01G233300 chr4D 394481691 394490564 8873 False 1655.8 4726 91.07140 105 5951 5 chr4D.!!$F1 5846
2 TraesCS4B01G233300 chr4A 75968558 75973471 4913 False 1663.5 3520 90.98025 673 5681 4 chr4A.!!$F1 5008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 358 0.106167 AGCTATCACCGTAGAGGCCA 60.106 55.000 5.01 0.00 46.52 5.36 F
443 444 0.249955 CGAAATGGCCCCTTTTGCAT 59.750 50.000 0.00 0.00 0.00 3.96 F
510 511 0.396811 GGGTTAGGGCGTCATGCTAT 59.603 55.000 0.00 0.00 45.43 2.97 F
554 555 0.597377 CGCCATGCTACATGTCGCTA 60.597 55.000 21.42 9.79 0.00 4.26 F
574 575 0.888736 TCATGACGTTGTTGCCTGGG 60.889 55.000 0.00 0.00 0.00 4.45 F
587 588 0.963355 GCCTGGGGCGTCAATGTAAA 60.963 55.000 0.00 0.00 39.62 2.01 F
594 595 1.132453 GGCGTCAATGTAAAAGAGGGC 59.868 52.381 0.00 0.00 35.99 5.19 F
1173 3971 1.183030 TCGACTTCTCCCGCTCCAAA 61.183 55.000 0.00 0.00 0.00 3.28 F
1859 4852 1.298859 GGCGTGCCTCTGTTTACAGG 61.299 60.000 9.82 0.00 43.91 4.00 F
2624 5619 1.693606 AGCTGGTTTTGGTCCCATTTG 59.306 47.619 0.00 0.00 0.00 2.32 F
4169 7360 0.549902 TGAAGAATCAGGCCCTCCCA 60.550 55.000 0.00 0.00 35.39 4.37 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1367 4194 0.250814 AGTTCACCCGACGAGACTCT 60.251 55.000 0.00 0.00 0.00 3.24 R
1377 4204 0.606401 AATCAGCACCAGTTCACCCG 60.606 55.000 0.00 0.00 0.00 5.28 R
1820 4813 0.752658 ACGCCATACTGCATCTGCTA 59.247 50.000 3.53 0.00 42.66 3.49 R
2254 5247 1.482182 AGAGGTGCGCATTCAGTATCA 59.518 47.619 15.91 0.00 0.00 2.15 R
2549 5544 7.903995 AATAATGAATTTGAACGGTGCAATT 57.096 28.000 1.60 0.00 0.00 2.32 R
2614 5609 5.859495 TGGAAAACAAATACAAATGGGACC 58.141 37.500 0.00 0.00 0.00 4.46 R
2615 5610 6.754193 TCTGGAAAACAAATACAAATGGGAC 58.246 36.000 0.00 0.00 0.00 4.46 R
2682 5677 1.572415 TGGGACGGAGGGAGTACTAAT 59.428 52.381 0.00 0.00 0.00 1.73 R
3400 6575 0.036010 CCTACTGGTTGCACCCTCAG 60.036 60.000 0.57 2.71 37.50 3.35 R
4401 7592 0.036732 ACTTCTGCAGCATTTCCGGA 59.963 50.000 9.47 0.00 0.00 5.14 R
5297 8495 0.899717 TTTCCACATTGCAGCCCTCC 60.900 55.000 0.00 0.00 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.689383 TCCATGATTTAGCCGAAAATAGC 57.311 39.130 0.00 0.00 0.00 2.97
23 24 5.129634 TCCATGATTTAGCCGAAAATAGCA 58.870 37.500 0.00 0.00 0.00 3.49
24 25 5.769662 TCCATGATTTAGCCGAAAATAGCAT 59.230 36.000 0.00 0.00 0.00 3.79
25 26 6.265196 TCCATGATTTAGCCGAAAATAGCATT 59.735 34.615 0.00 0.00 0.00 3.56
26 27 7.446931 TCCATGATTTAGCCGAAAATAGCATTA 59.553 33.333 0.00 0.00 0.00 1.90
27 28 7.752239 CCATGATTTAGCCGAAAATAGCATTAG 59.248 37.037 0.00 0.00 0.00 1.73
28 29 6.668323 TGATTTAGCCGAAAATAGCATTAGC 58.332 36.000 0.00 0.00 42.56 3.09
40 41 2.584492 GCATTAGCTTCGGGCAATTT 57.416 45.000 0.00 0.00 44.79 1.82
41 42 2.195922 GCATTAGCTTCGGGCAATTTG 58.804 47.619 0.00 0.00 44.79 2.32
42 43 2.813061 CATTAGCTTCGGGCAATTTGG 58.187 47.619 0.00 0.00 44.79 3.28
43 44 0.530288 TTAGCTTCGGGCAATTTGGC 59.470 50.000 14.19 14.19 44.79 4.52
44 45 0.610509 TAGCTTCGGGCAATTTGGCA 60.611 50.000 22.59 2.25 45.76 4.92
45 46 1.005156 GCTTCGGGCAATTTGGCAA 60.005 52.632 22.59 9.81 45.76 4.52
46 47 0.602372 GCTTCGGGCAATTTGGCAAA 60.602 50.000 22.59 16.01 45.76 3.68
47 48 1.431496 CTTCGGGCAATTTGGCAAAG 58.569 50.000 22.59 19.45 45.76 2.77
48 49 1.000731 CTTCGGGCAATTTGGCAAAGA 59.999 47.619 22.59 15.54 45.76 2.52
49 50 0.602562 TCGGGCAATTTGGCAAAGAG 59.397 50.000 22.59 13.48 45.76 2.85
50 51 0.602562 CGGGCAATTTGGCAAAGAGA 59.397 50.000 22.59 0.00 45.76 3.10
51 52 1.000731 CGGGCAATTTGGCAAAGAGAA 59.999 47.619 22.59 0.00 45.76 2.87
52 53 2.547642 CGGGCAATTTGGCAAAGAGAAA 60.548 45.455 22.59 0.00 45.76 2.52
53 54 3.475575 GGGCAATTTGGCAAAGAGAAAA 58.524 40.909 22.59 0.00 45.76 2.29
54 55 3.882288 GGGCAATTTGGCAAAGAGAAAAA 59.118 39.130 22.59 0.00 45.76 1.94
77 78 8.496872 AAAAAGGTGAATACGAAAACATAACG 57.503 30.769 0.00 0.00 0.00 3.18
78 79 7.424227 AAAGGTGAATACGAAAACATAACGA 57.576 32.000 0.00 0.00 0.00 3.85
79 80 7.424227 AAGGTGAATACGAAAACATAACGAA 57.576 32.000 0.00 0.00 0.00 3.85
80 81 7.424227 AGGTGAATACGAAAACATAACGAAA 57.576 32.000 0.00 0.00 0.00 3.46
81 82 7.293018 AGGTGAATACGAAAACATAACGAAAC 58.707 34.615 0.00 0.00 0.00 2.78
82 83 7.041916 AGGTGAATACGAAAACATAACGAAACA 60.042 33.333 0.00 0.00 0.00 2.83
83 84 7.747357 GGTGAATACGAAAACATAACGAAACAT 59.253 33.333 0.00 0.00 0.00 2.71
84 85 9.743937 GTGAATACGAAAACATAACGAAACATA 57.256 29.630 0.00 0.00 0.00 2.29
88 89 7.926340 ACGAAAACATAACGAAACATATTCG 57.074 32.000 8.86 8.86 46.36 3.34
89 90 7.731720 ACGAAAACATAACGAAACATATTCGA 58.268 30.769 16.46 0.00 43.97 3.71
90 91 8.385111 ACGAAAACATAACGAAACATATTCGAT 58.615 29.630 16.46 7.93 43.97 3.59
91 92 9.205916 CGAAAACATAACGAAACATATTCGATT 57.794 29.630 16.46 9.62 43.97 3.34
98 99 9.940166 ATAACGAAACATATTCGATTAAAACCC 57.060 29.630 16.46 0.00 43.97 4.11
99 100 6.788243 ACGAAACATATTCGATTAAAACCCC 58.212 36.000 16.46 0.00 43.97 4.95
100 101 6.374894 ACGAAACATATTCGATTAAAACCCCA 59.625 34.615 16.46 0.00 43.97 4.96
101 102 6.689669 CGAAACATATTCGATTAAAACCCCAC 59.310 38.462 4.69 0.00 43.97 4.61
102 103 7.469537 AAACATATTCGATTAAAACCCCACA 57.530 32.000 0.00 0.00 0.00 4.17
103 104 7.469537 AACATATTCGATTAAAACCCCACAA 57.530 32.000 0.00 0.00 0.00 3.33
104 105 7.469537 ACATATTCGATTAAAACCCCACAAA 57.530 32.000 0.00 0.00 0.00 2.83
105 106 7.897864 ACATATTCGATTAAAACCCCACAAAA 58.102 30.769 0.00 0.00 0.00 2.44
106 107 8.368668 ACATATTCGATTAAAACCCCACAAAAA 58.631 29.630 0.00 0.00 0.00 1.94
107 108 8.652463 CATATTCGATTAAAACCCCACAAAAAC 58.348 33.333 0.00 0.00 0.00 2.43
108 109 5.593679 TCGATTAAAACCCCACAAAAACA 57.406 34.783 0.00 0.00 0.00 2.83
109 110 6.163135 TCGATTAAAACCCCACAAAAACAT 57.837 33.333 0.00 0.00 0.00 2.71
110 111 7.286215 TCGATTAAAACCCCACAAAAACATA 57.714 32.000 0.00 0.00 0.00 2.29
111 112 7.897864 TCGATTAAAACCCCACAAAAACATAT 58.102 30.769 0.00 0.00 0.00 1.78
112 113 8.030106 TCGATTAAAACCCCACAAAAACATATC 58.970 33.333 0.00 0.00 0.00 1.63
113 114 7.276878 CGATTAAAACCCCACAAAAACATATCC 59.723 37.037 0.00 0.00 0.00 2.59
114 115 5.896073 AAAACCCCACAAAAACATATCCA 57.104 34.783 0.00 0.00 0.00 3.41
232 233 9.838339 AGAGTGGAATAAATTCGAGTTTCATAT 57.162 29.630 9.37 0.00 37.67 1.78
276 277 5.047802 ACAAGGTGGAATGTCATTTTAGCAG 60.048 40.000 0.00 2.52 0.00 4.24
284 285 7.029563 GGAATGTCATTTTAGCAGTTAGGTTG 58.970 38.462 0.00 0.00 0.00 3.77
298 299 6.159988 CAGTTAGGTTGAGAGGTCTTGTAAG 58.840 44.000 0.00 0.00 0.00 2.34
325 326 2.005960 CTCCTAGCCGAACAGGACCG 62.006 65.000 0.00 0.00 45.00 4.79
342 343 3.572632 ACCGATGGTCTGTACTAGCTA 57.427 47.619 0.00 0.00 0.00 3.32
355 356 2.506444 ACTAGCTATCACCGTAGAGGC 58.494 52.381 0.00 0.00 46.52 4.70
357 358 0.106167 AGCTATCACCGTAGAGGCCA 60.106 55.000 5.01 0.00 46.52 5.36
358 359 0.750850 GCTATCACCGTAGAGGCCAA 59.249 55.000 5.01 0.00 46.52 4.52
360 361 2.419574 GCTATCACCGTAGAGGCCAAAA 60.420 50.000 5.01 0.00 46.52 2.44
361 362 3.744530 GCTATCACCGTAGAGGCCAAAAT 60.745 47.826 5.01 0.00 46.52 1.82
362 363 2.107950 TCACCGTAGAGGCCAAAATG 57.892 50.000 5.01 0.00 46.52 2.32
364 365 0.988832 ACCGTAGAGGCCAAAATGGA 59.011 50.000 5.01 0.00 46.52 3.41
366 367 2.775384 ACCGTAGAGGCCAAAATGGATA 59.225 45.455 5.01 0.00 46.52 2.59
367 368 3.201266 ACCGTAGAGGCCAAAATGGATAA 59.799 43.478 5.01 0.00 46.52 1.75
368 369 4.204012 CCGTAGAGGCCAAAATGGATAAA 58.796 43.478 5.01 0.00 40.96 1.40
370 371 5.449999 CCGTAGAGGCCAAAATGGATAAAAC 60.450 44.000 5.01 0.00 40.96 2.43
371 372 5.357032 CGTAGAGGCCAAAATGGATAAAACT 59.643 40.000 5.01 0.00 40.96 2.66
372 373 5.665916 AGAGGCCAAAATGGATAAAACTG 57.334 39.130 5.01 0.00 40.96 3.16
374 375 3.055167 AGGCCAAAATGGATAAAACTGGC 60.055 43.478 5.01 1.52 45.71 4.85
375 376 3.270027 GCCAAAATGGATAAAACTGGCC 58.730 45.455 0.00 0.00 40.96 5.36
376 377 3.872696 CCAAAATGGATAAAACTGGCCC 58.127 45.455 0.00 0.00 40.96 5.80
377 378 3.519107 CCAAAATGGATAAAACTGGCCCT 59.481 43.478 0.00 0.00 40.96 5.19
379 380 5.188751 CCAAAATGGATAAAACTGGCCCTTA 59.811 40.000 0.00 0.00 40.96 2.69
380 381 6.126796 CCAAAATGGATAAAACTGGCCCTTAT 60.127 38.462 0.00 0.00 40.96 1.73
381 382 6.731292 AAATGGATAAAACTGGCCCTTATC 57.269 37.500 0.00 7.76 33.24 1.75
384 385 6.584471 TGGATAAAACTGGCCCTTATCTAA 57.416 37.500 16.98 8.55 34.08 2.10
386 387 7.060421 TGGATAAAACTGGCCCTTATCTAAAG 58.940 38.462 16.98 2.68 34.08 1.85
387 388 6.016192 GGATAAAACTGGCCCTTATCTAAAGC 60.016 42.308 16.98 0.00 34.08 3.51
389 390 4.592997 AACTGGCCCTTATCTAAAGCTT 57.407 40.909 0.00 0.00 0.00 3.74
390 391 4.157849 ACTGGCCCTTATCTAAAGCTTC 57.842 45.455 0.00 0.00 0.00 3.86
391 392 3.523564 ACTGGCCCTTATCTAAAGCTTCA 59.476 43.478 0.00 0.00 0.00 3.02
393 394 4.270008 TGGCCCTTATCTAAAGCTTCAAC 58.730 43.478 0.00 0.00 0.00 3.18
394 395 4.263727 TGGCCCTTATCTAAAGCTTCAACA 60.264 41.667 0.00 0.00 0.00 3.33
395 396 4.096532 GGCCCTTATCTAAAGCTTCAACAC 59.903 45.833 0.00 0.00 0.00 3.32
397 398 5.183140 GCCCTTATCTAAAGCTTCAACACAA 59.817 40.000 0.00 0.00 0.00 3.33
398 399 6.294508 GCCCTTATCTAAAGCTTCAACACAAA 60.295 38.462 0.00 0.00 0.00 2.83
400 401 8.306761 CCCTTATCTAAAGCTTCAACACAAAAT 58.693 33.333 0.00 0.00 0.00 1.82
401 402 9.132521 CCTTATCTAAAGCTTCAACACAAAATG 57.867 33.333 0.00 0.00 0.00 2.32
402 403 9.132521 CTTATCTAAAGCTTCAACACAAAATGG 57.867 33.333 0.00 0.00 0.00 3.16
403 404 5.288804 TCTAAAGCTTCAACACAAAATGGC 58.711 37.500 0.00 0.00 0.00 4.40
404 405 2.531522 AGCTTCAACACAAAATGGCC 57.468 45.000 0.00 0.00 0.00 5.36
405 406 1.070601 AGCTTCAACACAAAATGGCCC 59.929 47.619 0.00 0.00 0.00 5.80
407 408 2.744494 GCTTCAACACAAAATGGCCCAA 60.744 45.455 0.00 0.00 0.00 4.12
411 412 3.390639 TCAACACAAAATGGCCCAAATCT 59.609 39.130 0.00 0.00 0.00 2.40
412 413 3.405823 ACACAAAATGGCCCAAATCTG 57.594 42.857 0.00 0.00 0.00 2.90
413 414 2.971330 ACACAAAATGGCCCAAATCTGA 59.029 40.909 0.00 0.00 0.00 3.27
414 415 3.390639 ACACAAAATGGCCCAAATCTGAA 59.609 39.130 0.00 0.00 0.00 3.02
415 416 4.041938 ACACAAAATGGCCCAAATCTGAAT 59.958 37.500 0.00 0.00 0.00 2.57
416 417 5.005094 CACAAAATGGCCCAAATCTGAATT 58.995 37.500 0.00 0.00 0.00 2.17
417 418 5.474189 CACAAAATGGCCCAAATCTGAATTT 59.526 36.000 0.00 0.00 35.43 1.82
418 419 6.016108 CACAAAATGGCCCAAATCTGAATTTT 60.016 34.615 0.00 0.00 32.69 1.82
419 420 6.550481 ACAAAATGGCCCAAATCTGAATTTTT 59.450 30.769 0.00 0.00 32.69 1.94
436 437 1.710816 TTTTTCACGAAATGGCCCCT 58.289 45.000 0.00 0.00 0.00 4.79
437 438 1.710816 TTTTCACGAAATGGCCCCTT 58.289 45.000 0.00 0.00 0.00 3.95
439 440 1.710816 TTCACGAAATGGCCCCTTTT 58.289 45.000 0.00 0.00 0.00 2.27
440 441 0.965439 TCACGAAATGGCCCCTTTTG 59.035 50.000 0.00 6.94 0.00 2.44
441 442 0.670239 CACGAAATGGCCCCTTTTGC 60.670 55.000 0.00 0.00 0.00 3.68
443 444 0.249955 CGAAATGGCCCCTTTTGCAT 59.750 50.000 0.00 0.00 0.00 3.96
444 445 1.741528 GAAATGGCCCCTTTTGCATG 58.258 50.000 0.00 0.00 0.00 4.06
446 447 0.614812 AATGGCCCCTTTTGCATGAC 59.385 50.000 0.00 0.00 0.00 3.06
447 448 1.606885 ATGGCCCCTTTTGCATGACG 61.607 55.000 0.00 0.00 0.00 4.35
448 449 2.125952 GCCCCTTTTGCATGACGC 60.126 61.111 0.00 0.00 42.89 5.19
449 450 2.573340 CCCCTTTTGCATGACGCC 59.427 61.111 0.00 0.00 41.33 5.68
450 451 1.978617 CCCCTTTTGCATGACGCCT 60.979 57.895 0.00 0.00 41.33 5.52
451 452 1.213537 CCCTTTTGCATGACGCCTG 59.786 57.895 0.00 0.00 41.33 4.85
452 453 1.213537 CCTTTTGCATGACGCCTGG 59.786 57.895 0.00 0.00 41.33 4.45
453 454 1.213537 CTTTTGCATGACGCCTGGG 59.786 57.895 0.00 0.00 41.33 4.45
454 455 2.216750 CTTTTGCATGACGCCTGGGG 62.217 60.000 9.49 9.49 41.33 4.96
477 478 2.969238 GCACGCGCCATGCTAGAT 60.969 61.111 20.88 0.00 43.27 1.98
478 479 1.664649 GCACGCGCCATGCTAGATA 60.665 57.895 20.88 0.00 43.27 1.98
479 480 1.621301 GCACGCGCCATGCTAGATAG 61.621 60.000 20.88 0.00 43.27 2.08
491 492 2.254918 CTAGATAGCATGACGCCTCG 57.745 55.000 0.00 0.00 44.04 4.63
493 494 1.373497 GATAGCATGACGCCTCGGG 60.373 63.158 0.00 0.00 44.04 5.14
495 496 1.686325 ATAGCATGACGCCTCGGGTT 61.686 55.000 0.00 0.00 44.04 4.11
497 498 1.883084 GCATGACGCCTCGGGTTAG 60.883 63.158 0.00 0.00 32.94 2.34
498 499 1.227263 CATGACGCCTCGGGTTAGG 60.227 63.158 0.00 0.00 39.87 2.69
500 501 4.525949 GACGCCTCGGGTTAGGGC 62.526 72.222 0.00 0.00 42.18 5.19
503 504 4.525949 GCCTCGGGTTAGGGCGTC 62.526 72.222 0.00 0.00 37.11 5.19
505 506 2.432300 CCTCGGGTTAGGGCGTCAT 61.432 63.158 0.00 0.00 32.55 3.06
506 507 1.227263 CTCGGGTTAGGGCGTCATG 60.227 63.158 0.00 0.00 0.00 3.07
507 508 2.895372 CGGGTTAGGGCGTCATGC 60.895 66.667 0.00 0.00 45.38 4.06
508 509 2.590092 GGGTTAGGGCGTCATGCT 59.410 61.111 0.00 0.00 45.43 3.79
510 511 0.396811 GGGTTAGGGCGTCATGCTAT 59.603 55.000 0.00 0.00 45.43 2.97
512 513 2.572290 GGTTAGGGCGTCATGCTATTT 58.428 47.619 0.00 0.00 45.43 1.40
513 514 2.290641 GGTTAGGGCGTCATGCTATTTG 59.709 50.000 0.00 0.00 45.43 2.32
514 515 2.254546 TAGGGCGTCATGCTATTTGG 57.745 50.000 0.00 0.00 45.43 3.28
515 516 1.103398 AGGGCGTCATGCTATTTGGC 61.103 55.000 0.00 0.00 45.43 4.52
516 517 1.383456 GGGCGTCATGCTATTTGGCA 61.383 55.000 0.00 0.00 46.63 4.92
548 549 3.289834 GGGGCGCCATGCTACATG 61.290 66.667 30.85 0.48 45.43 3.21
549 550 2.516930 GGGCGCCATGCTACATGT 60.517 61.111 30.85 2.69 45.43 3.21
550 551 2.546494 GGGCGCCATGCTACATGTC 61.546 63.158 30.85 1.22 45.43 3.06
551 552 2.628106 GCGCCATGCTACATGTCG 59.372 61.111 0.00 6.64 41.73 4.35
553 554 1.884464 CGCCATGCTACATGTCGCT 60.884 57.895 21.42 6.26 0.00 4.93
554 555 0.597377 CGCCATGCTACATGTCGCTA 60.597 55.000 21.42 9.79 0.00 4.26
556 557 1.728971 GCCATGCTACATGTCGCTATC 59.271 52.381 21.42 6.37 0.00 2.08
557 558 2.867647 GCCATGCTACATGTCGCTATCA 60.868 50.000 21.42 3.45 0.00 2.15
559 560 3.370061 CCATGCTACATGTCGCTATCATG 59.630 47.826 21.42 15.85 45.41 3.07
560 561 4.240096 CATGCTACATGTCGCTATCATGA 58.760 43.478 21.42 0.00 43.47 3.07
561 562 3.642705 TGCTACATGTCGCTATCATGAC 58.357 45.455 21.42 0.85 43.47 3.06
564 565 3.165058 ACATGTCGCTATCATGACGTT 57.835 42.857 15.73 0.00 43.47 3.99
565 566 2.860136 ACATGTCGCTATCATGACGTTG 59.140 45.455 15.73 1.00 43.47 4.10
566 567 2.647529 TGTCGCTATCATGACGTTGT 57.352 45.000 0.00 0.00 37.94 3.32
567 568 2.954316 TGTCGCTATCATGACGTTGTT 58.046 42.857 0.00 0.00 37.94 2.83
569 570 1.658596 TCGCTATCATGACGTTGTTGC 59.341 47.619 0.00 0.00 0.00 4.17
570 571 1.267532 CGCTATCATGACGTTGTTGCC 60.268 52.381 0.00 0.00 0.00 4.52
571 572 2.009774 GCTATCATGACGTTGTTGCCT 58.990 47.619 0.00 0.00 0.00 4.75
573 574 1.167851 ATCATGACGTTGTTGCCTGG 58.832 50.000 0.00 0.00 0.00 4.45
574 575 0.888736 TCATGACGTTGTTGCCTGGG 60.889 55.000 0.00 0.00 0.00 4.45
575 576 1.603455 ATGACGTTGTTGCCTGGGG 60.603 57.895 0.00 0.00 0.00 4.96
586 587 1.377987 GCCTGGGGCGTCAATGTAA 60.378 57.895 0.00 0.00 39.62 2.41
587 588 0.963355 GCCTGGGGCGTCAATGTAAA 60.963 55.000 0.00 0.00 39.62 2.01
588 589 1.540267 CCTGGGGCGTCAATGTAAAA 58.460 50.000 0.00 0.00 0.00 1.52
589 590 1.472480 CCTGGGGCGTCAATGTAAAAG 59.528 52.381 0.00 0.00 0.00 2.27
590 591 2.432444 CTGGGGCGTCAATGTAAAAGA 58.568 47.619 0.00 0.00 0.00 2.52
591 592 2.420022 CTGGGGCGTCAATGTAAAAGAG 59.580 50.000 0.00 0.00 0.00 2.85
593 594 1.743394 GGGCGTCAATGTAAAAGAGGG 59.257 52.381 0.00 0.00 0.00 4.30
594 595 1.132453 GGCGTCAATGTAAAAGAGGGC 59.868 52.381 0.00 0.00 35.99 5.19
596 597 2.227865 GCGTCAATGTAAAAGAGGGCAA 59.772 45.455 0.00 0.00 0.00 4.52
598 599 4.618227 GCGTCAATGTAAAAGAGGGCAATT 60.618 41.667 0.00 0.00 0.00 2.32
599 600 5.469479 CGTCAATGTAAAAGAGGGCAATTT 58.531 37.500 0.00 0.00 0.00 1.82
600 601 5.572896 CGTCAATGTAAAAGAGGGCAATTTC 59.427 40.000 0.00 0.00 0.00 2.17
601 602 6.454795 GTCAATGTAAAAGAGGGCAATTTCA 58.545 36.000 0.00 0.00 0.00 2.69
602 603 7.099120 GTCAATGTAAAAGAGGGCAATTTCAT 58.901 34.615 0.00 0.00 0.00 2.57
603 604 7.063780 GTCAATGTAAAAGAGGGCAATTTCATG 59.936 37.037 0.00 0.00 0.00 3.07
604 605 6.855763 ATGTAAAAGAGGGCAATTTCATGA 57.144 33.333 0.00 0.00 0.00 3.07
605 606 6.662865 TGTAAAAGAGGGCAATTTCATGAA 57.337 33.333 3.38 3.38 0.00 2.57
606 607 7.060383 TGTAAAAGAGGGCAATTTCATGAAA 57.940 32.000 22.52 22.52 34.46 2.69
607 608 7.678837 TGTAAAAGAGGGCAATTTCATGAAAT 58.321 30.769 24.83 24.83 42.35 2.17
608 609 8.811017 TGTAAAAGAGGGCAATTTCATGAAATA 58.189 29.630 29.16 8.16 39.88 1.40
609 610 9.822185 GTAAAAGAGGGCAATTTCATGAAATAT 57.178 29.630 29.16 18.11 39.88 1.28
611 612 9.743581 AAAAGAGGGCAATTTCATGAAATATTT 57.256 25.926 29.16 16.19 39.88 1.40
612 613 9.743581 AAAGAGGGCAATTTCATGAAATATTTT 57.256 25.926 29.16 14.95 39.88 1.82
613 614 8.953368 AGAGGGCAATTTCATGAAATATTTTC 57.047 30.769 29.16 21.76 39.88 2.29
614 615 8.542080 AGAGGGCAATTTCATGAAATATTTTCA 58.458 29.630 29.16 4.46 39.88 2.69
615 616 8.726870 AGGGCAATTTCATGAAATATTTTCAG 57.273 30.769 29.16 15.73 39.88 3.02
616 617 8.542080 AGGGCAATTTCATGAAATATTTTCAGA 58.458 29.630 29.16 3.00 39.88 3.27
635 1616 6.075762 TCAGATTGAGGTCATTTTGTGTTG 57.924 37.500 0.00 0.00 0.00 3.33
638 1619 6.639686 CAGATTGAGGTCATTTTGTGTTGAAG 59.360 38.462 0.00 0.00 0.00 3.02
639 1620 5.913137 TTGAGGTCATTTTGTGTTGAAGT 57.087 34.783 0.00 0.00 0.00 3.01
640 1621 5.913137 TGAGGTCATTTTGTGTTGAAGTT 57.087 34.783 0.00 0.00 0.00 2.66
644 1625 6.332630 AGGTCATTTTGTGTTGAAGTTTCAG 58.667 36.000 0.00 0.00 38.61 3.02
646 1627 6.980397 GGTCATTTTGTGTTGAAGTTTCAGAT 59.020 34.615 0.00 0.00 38.61 2.90
651 1632 8.925161 TTTTGTGTTGAAGTTTCAGATAAAGG 57.075 30.769 0.00 0.00 38.61 3.11
653 1634 7.259290 TGTGTTGAAGTTTCAGATAAAGGAC 57.741 36.000 0.00 0.00 38.61 3.85
655 1636 7.012327 TGTGTTGAAGTTTCAGATAAAGGACAG 59.988 37.037 0.00 0.00 38.61 3.51
656 1637 7.226720 GTGTTGAAGTTTCAGATAAAGGACAGA 59.773 37.037 0.00 0.00 38.61 3.41
657 1638 7.939039 TGTTGAAGTTTCAGATAAAGGACAGAT 59.061 33.333 0.00 0.00 38.61 2.90
658 1639 8.787852 GTTGAAGTTTCAGATAAAGGACAGATT 58.212 33.333 0.00 0.00 38.61 2.40
659 1640 8.924511 TGAAGTTTCAGATAAAGGACAGATTT 57.075 30.769 0.00 0.00 32.50 2.17
660 1641 8.786898 TGAAGTTTCAGATAAAGGACAGATTTG 58.213 33.333 0.00 0.00 32.50 2.32
661 1642 8.697507 AAGTTTCAGATAAAGGACAGATTTGT 57.302 30.769 0.00 0.00 41.18 2.83
662 1643 8.697507 AGTTTCAGATAAAGGACAGATTTGTT 57.302 30.769 0.00 0.00 37.76 2.83
663 1644 8.787852 AGTTTCAGATAAAGGACAGATTTGTTC 58.212 33.333 0.00 0.00 37.76 3.18
664 1645 8.567948 GTTTCAGATAAAGGACAGATTTGTTCA 58.432 33.333 0.00 0.00 37.76 3.18
665 1646 8.868522 TTCAGATAAAGGACAGATTTGTTCAT 57.131 30.769 0.00 0.00 37.76 2.57
666 1647 8.868522 TCAGATAAAGGACAGATTTGTTCATT 57.131 30.769 0.00 0.00 37.76 2.57
667 1648 9.300681 TCAGATAAAGGACAGATTTGTTCATTT 57.699 29.630 0.00 1.66 37.76 2.32
671 1652 9.696917 ATAAAGGACAGATTTGTTCATTTTCAC 57.303 29.630 0.00 0.00 37.76 3.18
680 3461 3.417101 TGTTCATTTTCACGGCCATAGT 58.583 40.909 2.24 0.00 0.00 2.12
683 3464 2.163412 TCATTTTCACGGCCATAGTTGC 59.837 45.455 2.24 0.00 0.00 4.17
710 3491 3.996480 GCTGAAGCTATTTCCCTCGTAT 58.004 45.455 0.00 0.00 38.21 3.06
749 3530 2.511373 TCGATTTCGCAGCCGCAT 60.511 55.556 0.00 0.00 38.40 4.73
779 3560 1.653115 GTCGATCACGGCCGTAGAT 59.347 57.895 33.70 31.63 38.25 1.98
875 3657 3.461773 GCAGGCAGGCGAGTCCTA 61.462 66.667 0.00 0.00 45.52 2.94
1173 3971 1.183030 TCGACTTCTCCCGCTCCAAA 61.183 55.000 0.00 0.00 0.00 3.28
1241 4058 6.508030 ACTTCTTCTCTCCTTCCTTTTCTT 57.492 37.500 0.00 0.00 0.00 2.52
1242 4059 6.295249 ACTTCTTCTCTCCTTCCTTTTCTTG 58.705 40.000 0.00 0.00 0.00 3.02
1243 4060 6.100424 ACTTCTTCTCTCCTTCCTTTTCTTGA 59.900 38.462 0.00 0.00 0.00 3.02
1244 4061 6.694445 TCTTCTCTCCTTCCTTTTCTTGAT 57.306 37.500 0.00 0.00 0.00 2.57
1246 4063 6.939163 TCTTCTCTCCTTCCTTTTCTTGATTG 59.061 38.462 0.00 0.00 0.00 2.67
1247 4064 6.439636 TCTCTCCTTCCTTTTCTTGATTGA 57.560 37.500 0.00 0.00 0.00 2.57
1258 4077 9.865321 TCCTTTTCTTGATTGATTGATTGATTC 57.135 29.630 0.00 0.00 0.00 2.52
1296 4123 2.445274 GCATTCTGCTGACGTTCGA 58.555 52.632 0.00 0.00 40.96 3.71
1337 4164 1.663695 CAGCATGTTAGTTACGGGGG 58.336 55.000 0.00 0.00 0.00 5.40
1367 4194 5.346181 CCCTTTTGTGGGTTTTCTTGTTA 57.654 39.130 0.00 0.00 42.25 2.41
1377 4204 4.685165 GGGTTTTCTTGTTAGAGTCTCGTC 59.315 45.833 0.00 0.00 0.00 4.20
1501 4494 2.143122 CGTTATCATGGCGGTATTGCT 58.857 47.619 0.00 0.00 34.52 3.91
1528 4521 7.114095 GGACCAAAGGAGGTGTTTATTATGTA 58.886 38.462 0.00 0.00 43.38 2.29
1529 4522 7.066645 GGACCAAAGGAGGTGTTTATTATGTAC 59.933 40.741 0.00 0.00 43.38 2.90
1530 4523 7.696017 ACCAAAGGAGGTGTTTATTATGTACT 58.304 34.615 0.00 0.00 41.30 2.73
1531 4524 8.828751 ACCAAAGGAGGTGTTTATTATGTACTA 58.171 33.333 0.00 0.00 41.30 1.82
1532 4525 9.106070 CCAAAGGAGGTGTTTATTATGTACTAC 57.894 37.037 0.00 0.00 0.00 2.73
1533 4526 9.886132 CAAAGGAGGTGTTTATTATGTACTACT 57.114 33.333 0.00 0.00 0.00 2.57
1535 4528 7.938715 AGGAGGTGTTTATTATGTACTACTCG 58.061 38.462 0.00 0.00 0.00 4.18
1536 4529 7.559170 AGGAGGTGTTTATTATGTACTACTCGT 59.441 37.037 0.00 0.00 0.00 4.18
1537 4530 8.840321 GGAGGTGTTTATTATGTACTACTCGTA 58.160 37.037 0.00 0.00 0.00 3.43
1538 4531 9.875675 GAGGTGTTTATTATGTACTACTCGTAG 57.124 37.037 2.66 2.66 39.04 3.51
1643 4636 5.070001 TCCTATGCTTGCAACTTGTAAACT 58.930 37.500 0.00 0.00 0.00 2.66
1645 4638 3.332761 TGCTTGCAACTTGTAAACTCG 57.667 42.857 0.00 0.00 0.00 4.18
1703 4696 3.137544 TCTCTTTTGTTGCCTTGGTCCTA 59.862 43.478 0.00 0.00 0.00 2.94
1734 4727 2.496871 CCATGCTGTTTAAGATTGGGCA 59.503 45.455 0.00 0.00 0.00 5.36
1769 4762 1.922570 CCCGTTCTGGTCAATACTCG 58.077 55.000 0.00 0.00 35.15 4.18
1809 4802 4.097892 TCTTTCTGGAAAAACACTTCAGGC 59.902 41.667 0.00 0.00 0.00 4.85
1811 4804 3.565307 TCTGGAAAAACACTTCAGGCAT 58.435 40.909 0.00 0.00 0.00 4.40
1842 4835 1.524621 AGATGCAGTATGGCGTGGC 60.525 57.895 0.00 0.00 35.86 5.01
1859 4852 1.298859 GGCGTGCCTCTGTTTACAGG 61.299 60.000 9.82 0.00 43.91 4.00
1893 4886 5.707298 ACTGTATTGTGATTTTAGCTGTGCT 59.293 36.000 0.00 0.00 43.41 4.40
1894 4887 6.878923 ACTGTATTGTGATTTTAGCTGTGCTA 59.121 34.615 0.00 0.00 40.44 3.49
1895 4888 7.065085 ACTGTATTGTGATTTTAGCTGTGCTAG 59.935 37.037 0.00 0.00 42.34 3.42
1955 4948 4.640771 AATCTCTACTGACTTGCCCAAA 57.359 40.909 0.00 0.00 0.00 3.28
2254 5247 3.245264 CCTACACCCCTGTTCTTGGATTT 60.245 47.826 0.00 0.00 0.00 2.17
2302 5295 6.165577 AGACAGAACAGTGTTGCAAATTTTT 58.834 32.000 14.57 0.00 0.00 1.94
2521 5516 3.328931 AGATGTTGAACAGTGGGTGAGAT 59.671 43.478 3.74 0.00 0.00 2.75
2549 5544 9.896645 ATCTCATTCATAGTCTGCTAAAAGAAA 57.103 29.630 0.00 0.00 0.00 2.52
2561 5556 4.742659 TGCTAAAAGAAAATTGCACCGTTC 59.257 37.500 0.00 0.00 0.00 3.95
2579 5574 7.328249 GCACCGTTCAAATTCATTATTTTCTGA 59.672 33.333 0.00 0.00 34.19 3.27
2614 5609 9.753669 CTGTTTTTAACTTTTTAGCTGGTTTTG 57.246 29.630 0.00 0.00 0.00 2.44
2615 5610 8.722394 TGTTTTTAACTTTTTAGCTGGTTTTGG 58.278 29.630 0.00 0.00 0.00 3.28
2624 5619 1.693606 AGCTGGTTTTGGTCCCATTTG 59.306 47.619 0.00 0.00 0.00 2.32
2655 5650 7.713073 TGTTTTCCAGATGTTCCAATTTTTACC 59.287 33.333 0.00 0.00 0.00 2.85
2710 5769 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
2712 5771 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2713 5772 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
2714 5773 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
2715 5774 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
2716 5775 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
2718 5777 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
2719 5778 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
2722 5781 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
2723 5782 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
2724 5783 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
2725 5784 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
2812 5892 5.505173 AAGTATGCAAAGATGTGTATGCC 57.495 39.130 0.00 0.00 38.00 4.40
2815 5895 2.979240 TGCAAAGATGTGTATGCCGTA 58.021 42.857 0.00 0.00 38.00 4.02
2834 5914 4.227538 CGTAGCTTACTATGGTGGAATCG 58.772 47.826 0.00 0.00 32.57 3.34
2835 5915 3.113260 AGCTTACTATGGTGGAATCGC 57.887 47.619 0.00 0.00 0.00 4.58
2847 6021 4.141824 TGGTGGAATCGCAAGTATATCACA 60.142 41.667 0.00 0.00 39.48 3.58
2894 6068 4.746466 AGTTATTTGATGGTTCCCCACAA 58.254 39.130 0.00 0.00 45.65 3.33
2897 6071 4.622260 ATTTGATGGTTCCCCACAAAAG 57.378 40.909 10.99 0.00 45.65 2.27
2898 6072 2.765689 TGATGGTTCCCCACAAAAGT 57.234 45.000 0.00 0.00 45.65 2.66
2899 6073 2.315176 TGATGGTTCCCCACAAAAGTG 58.685 47.619 0.00 0.00 45.65 3.16
3047 6222 2.108075 TGCCACCTTGAGATCCTTTGAA 59.892 45.455 0.00 0.00 0.00 2.69
3164 6339 2.053627 GCAAATGTTGTTCTCTTGGCG 58.946 47.619 0.00 0.00 0.00 5.69
3222 6397 5.795972 ACTTGCTTAGACTCCTTTAGGTTC 58.204 41.667 0.00 0.00 36.34 3.62
3228 6403 6.981559 GCTTAGACTCCTTTAGGTTCACTATG 59.018 42.308 0.00 0.00 36.34 2.23
3267 6442 6.582636 TCGTTTTCTTCAGATATATGCCACT 58.417 36.000 0.00 0.00 0.00 4.00
3375 6550 6.261158 CACATCTCTCAATGAAGAGCATCAAT 59.739 38.462 5.29 0.00 42.15 2.57
3400 6575 7.107542 TGTCTACAAGTATCCCATTGGTAAAC 58.892 38.462 1.20 0.00 0.00 2.01
3408 6583 2.041081 TCCCATTGGTAAACTGAGGGTG 59.959 50.000 1.20 0.00 36.24 4.61
3506 6681 5.167218 ACTTCTCGTTAGACTATTACCGC 57.833 43.478 0.00 0.00 0.00 5.68
3513 6688 4.968788 CGTTAGACTATTACCGCTGTCTTC 59.031 45.833 0.00 0.00 39.94 2.87
3524 6699 7.917720 TTACCGCTGTCTTCAAATTTTAAAC 57.082 32.000 0.00 0.00 0.00 2.01
3525 6700 4.973663 ACCGCTGTCTTCAAATTTTAAACG 59.026 37.500 0.00 0.00 0.00 3.60
3584 6759 2.099592 TCAAGCAGTTGAAAAGCTGGTG 59.900 45.455 0.00 0.00 41.81 4.17
3662 6837 6.674694 ATCATGATCTTTGCAACAGTAGTC 57.325 37.500 1.18 2.54 0.00 2.59
3692 6867 1.116536 TGTGGTTCTACTGCCGGACA 61.117 55.000 5.05 1.09 0.00 4.02
3789 6964 8.691661 ACAAATGAACATAGTTTACCAGAAGT 57.308 30.769 0.00 0.00 0.00 3.01
4044 7235 8.712285 AAATAATCTGATGCCACAAGAAAATG 57.288 30.769 0.00 0.00 0.00 2.32
4048 7239 5.531634 TCTGATGCCACAAGAAAATGTTTC 58.468 37.500 0.00 0.00 0.00 2.78
4062 7253 8.154649 AGAAAATGTTTCGTACAAGAACATCT 57.845 30.769 14.90 9.04 40.89 2.90
4102 7293 1.614241 GGCCTACTGGACGTGGATGT 61.614 60.000 0.00 0.00 34.57 3.06
4118 7309 4.816385 GTGGATGTCTCAAAGACTCAAACA 59.184 41.667 8.44 0.00 45.27 2.83
4119 7310 5.049818 GTGGATGTCTCAAAGACTCAAACAG 60.050 44.000 8.44 0.00 45.27 3.16
4168 7359 0.625849 TTGAAGAATCAGGCCCTCCC 59.374 55.000 0.00 0.00 36.78 4.30
4169 7360 0.549902 TGAAGAATCAGGCCCTCCCA 60.550 55.000 0.00 0.00 35.39 4.37
4182 7373 2.233271 CCCTCCCATCGATTTCCATTG 58.767 52.381 0.00 0.00 0.00 2.82
4191 7382 5.126061 CCATCGATTTCCATTGAAGAAACCT 59.874 40.000 0.00 0.00 36.13 3.50
4207 7398 7.123547 TGAAGAAACCTCCAACAGTTTTAACAT 59.876 33.333 0.00 0.00 36.36 2.71
4208 7399 8.528044 AAGAAACCTCCAACAGTTTTAACATA 57.472 30.769 0.00 0.00 36.36 2.29
4209 7400 8.166422 AGAAACCTCCAACAGTTTTAACATAG 57.834 34.615 0.00 0.00 36.36 2.23
4210 7401 7.778382 AGAAACCTCCAACAGTTTTAACATAGT 59.222 33.333 0.00 0.00 36.36 2.12
4211 7402 8.983702 AAACCTCCAACAGTTTTAACATAGTA 57.016 30.769 0.00 0.00 32.36 1.82
4266 7457 9.039870 CATAACTTGAATCCACTGATTACTCTC 57.960 37.037 0.00 0.00 41.30 3.20
4337 7528 1.759445 AGATGACGCTAGCCTGACATT 59.241 47.619 9.66 0.00 0.00 2.71
4380 7571 5.628797 TTGGTATCCTTGATGCAGTATCA 57.371 39.130 0.00 0.00 43.92 2.15
4401 7592 3.957497 CACTAGTAGGTGAATCAGCTCCT 59.043 47.826 18.90 15.13 41.50 3.69
4404 7595 1.067821 GTAGGTGAATCAGCTCCTCCG 59.932 57.143 18.90 0.00 41.50 4.63
4601 7793 9.082313 CTTCCCTGCAATATTAACCAAGATATT 57.918 33.333 0.00 0.00 0.00 1.28
4637 7835 0.764890 TCTGTTTGAGACCCTGGGTG 59.235 55.000 26.16 6.13 35.25 4.61
4638 7836 0.250901 CTGTTTGAGACCCTGGGTGG 60.251 60.000 26.16 0.00 35.25 4.61
4639 7837 1.603739 GTTTGAGACCCTGGGTGGC 60.604 63.158 26.16 15.19 35.25 5.01
4640 7838 3.190738 TTTGAGACCCTGGGTGGCG 62.191 63.158 26.16 0.00 35.25 5.69
4660 7858 2.012673 GGGTGCTGCACTGATTCTAAG 58.987 52.381 29.54 0.00 34.40 2.18
4696 7894 9.965824 ATTACTGCTTTATTTATTACCATGTGC 57.034 29.630 0.00 0.00 0.00 4.57
4724 7922 7.398829 TCCATAGCATTTGTTGGAAGTAGTAA 58.601 34.615 0.00 0.00 35.38 2.24
4746 7944 9.008965 AGTAATTGACACAATACTGCATAAACA 57.991 29.630 0.00 0.00 0.00 2.83
4770 7968 0.398696 AGATGTGCACGGTGGGTTAA 59.601 50.000 13.13 0.00 0.00 2.01
4773 7971 0.250124 TGTGCACGGTGGGTTAAGAG 60.250 55.000 13.13 0.00 0.00 2.85
4923 8121 0.040692 CGCATGCCATTGGAGAATCG 60.041 55.000 13.15 0.00 34.37 3.34
4941 8139 4.855715 ATCGCTCCAGATAAAGATCGAA 57.144 40.909 0.00 0.00 34.71 3.71
5061 8259 4.273480 CCGTGATTACCATCTGAATTCACC 59.727 45.833 3.38 0.00 0.00 4.02
5071 8269 3.546724 TCTGAATTCACCGTGGAAAACA 58.453 40.909 3.38 0.00 0.00 2.83
5108 8306 2.334946 GCTTGCCGTGCAGGATTCA 61.335 57.895 8.24 0.01 45.00 2.57
5131 8329 1.070134 ACAGTACATGGTGTCTTGCGT 59.930 47.619 0.00 0.00 0.00 5.24
5245 8443 3.327757 AGCCCTCTAAGTGTCATGTTTCA 59.672 43.478 0.00 0.00 0.00 2.69
5297 8495 2.606308 GCTGTCATTGTTTGTCTGCCAG 60.606 50.000 0.00 0.00 34.10 4.85
5317 8515 0.244721 GAGGGCTGCAATGTGGAAAC 59.755 55.000 0.50 0.00 0.00 2.78
5343 8541 1.860326 CCACAAAAAGAAAGCAAGCGG 59.140 47.619 0.00 0.00 0.00 5.52
5400 8598 1.600916 GCCGCTTGAGAAACCCTGT 60.601 57.895 0.00 0.00 0.00 4.00
5413 8611 3.388841 CCTGTTGGCTAGGGTCGT 58.611 61.111 0.00 0.00 0.00 4.34
5485 8683 8.338986 GGTGCTTAGAGATTTCTGCTATAAAAC 58.661 37.037 0.00 0.00 34.79 2.43
5517 8715 6.434028 TCCAAGGGTTAGTTCTGAATGATTTG 59.566 38.462 0.00 0.00 0.00 2.32
5699 8916 9.847706 ACTTATACTTTATGAGTATCTCGCATG 57.152 33.333 6.80 0.00 46.28 4.06
5790 9007 8.528917 TTTATATATTAGCGCTCGATGTTTGT 57.471 30.769 16.34 1.09 0.00 2.83
5810 9028 9.327628 TGTTTGTAAGTTTGTACACTTGCTATA 57.672 29.630 13.06 1.58 39.43 1.31
5834 9052 7.865706 AAAATCATCTATTTACGGCTCAACT 57.134 32.000 0.00 0.00 36.76 3.16
5835 9053 8.958119 AAAATCATCTATTTACGGCTCAACTA 57.042 30.769 0.00 0.00 36.76 2.24
5870 9088 5.069648 TGCATTGGTCCACTTTTTATTGACA 59.930 36.000 0.00 0.00 0.00 3.58
5920 9138 8.762426 GGACATTAATCTATTCGTTGGTACTTC 58.238 37.037 0.00 0.00 0.00 3.01
5921 9139 9.309516 GACATTAATCTATTCGTTGGTACTTCA 57.690 33.333 0.00 0.00 0.00 3.02
5925 9143 4.491676 TCTATTCGTTGGTACTTCACAGC 58.508 43.478 0.00 0.00 0.00 4.40
5956 9174 3.220658 CAACGGGTGCGGGGTTTT 61.221 61.111 0.00 0.00 0.00 2.43
5957 9175 2.442458 AACGGGTGCGGGGTTTTT 60.442 55.556 0.00 0.00 0.00 1.94
6024 9242 7.865820 AGGAATACATATGAATATCTGGTGGG 58.134 38.462 10.38 0.00 0.00 4.61
6025 9243 7.462328 AGGAATACATATGAATATCTGGTGGGT 59.538 37.037 10.38 0.00 0.00 4.51
6026 9244 8.768397 GGAATACATATGAATATCTGGTGGGTA 58.232 37.037 10.38 0.00 0.00 3.69
6029 9247 6.476378 ACATATGAATATCTGGTGGGTAAGC 58.524 40.000 10.38 0.00 0.00 3.09
6030 9248 3.857157 TGAATATCTGGTGGGTAAGCC 57.143 47.619 0.00 0.00 0.00 4.35
6031 9249 3.119319 TGAATATCTGGTGGGTAAGCCA 58.881 45.455 0.00 0.00 36.17 4.75
6032 9250 3.118038 TGAATATCTGGTGGGTAAGCCAC 60.118 47.826 0.00 0.00 36.17 5.01
6033 9251 1.959710 TATCTGGTGGGTAAGCCACA 58.040 50.000 0.00 4.30 39.66 4.17
6034 9252 1.298953 ATCTGGTGGGTAAGCCACAT 58.701 50.000 0.00 0.00 39.66 3.21
6035 9253 1.959710 TCTGGTGGGTAAGCCACATA 58.040 50.000 0.00 0.00 39.66 2.29
6036 9254 2.487775 TCTGGTGGGTAAGCCACATAT 58.512 47.619 0.00 0.00 39.66 1.78
6037 9255 2.172505 TCTGGTGGGTAAGCCACATATG 59.827 50.000 0.00 0.00 39.66 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.129634 TGCTATTTTCGGCTAAATCATGGA 58.870 37.500 0.00 0.00 0.00 3.41
1 2 5.437289 TGCTATTTTCGGCTAAATCATGG 57.563 39.130 0.00 0.00 0.00 3.66
2 3 7.272084 GCTAATGCTATTTTCGGCTAAATCATG 59.728 37.037 0.00 0.00 36.03 3.07
3 4 7.308435 GCTAATGCTATTTTCGGCTAAATCAT 58.692 34.615 0.00 0.00 36.03 2.45
4 5 6.668323 GCTAATGCTATTTTCGGCTAAATCA 58.332 36.000 0.00 0.00 36.03 2.57
21 22 2.195922 CAAATTGCCCGAAGCTAATGC 58.804 47.619 0.00 0.00 44.23 3.56
22 23 2.813061 CCAAATTGCCCGAAGCTAATG 58.187 47.619 0.00 0.00 44.23 1.90
23 24 1.136891 GCCAAATTGCCCGAAGCTAAT 59.863 47.619 0.00 0.00 44.23 1.73
24 25 0.530288 GCCAAATTGCCCGAAGCTAA 59.470 50.000 0.00 0.00 44.23 3.09
25 26 0.610509 TGCCAAATTGCCCGAAGCTA 60.611 50.000 0.00 0.00 44.23 3.32
26 27 1.470996 TTGCCAAATTGCCCGAAGCT 61.471 50.000 0.00 0.00 44.23 3.74
27 28 0.602372 TTTGCCAAATTGCCCGAAGC 60.602 50.000 0.00 0.00 44.14 3.86
28 29 1.000731 TCTTTGCCAAATTGCCCGAAG 59.999 47.619 0.00 5.86 0.00 3.79
29 30 1.000731 CTCTTTGCCAAATTGCCCGAA 59.999 47.619 0.00 0.00 0.00 4.30
30 31 0.602562 CTCTTTGCCAAATTGCCCGA 59.397 50.000 0.00 0.00 0.00 5.14
31 32 0.602562 TCTCTTTGCCAAATTGCCCG 59.397 50.000 0.00 0.00 0.00 6.13
32 33 2.837532 TTCTCTTTGCCAAATTGCCC 57.162 45.000 0.00 0.00 0.00 5.36
52 53 8.344098 TCGTTATGTTTTCGTATTCACCTTTTT 58.656 29.630 0.00 0.00 0.00 1.94
53 54 7.863666 TCGTTATGTTTTCGTATTCACCTTTT 58.136 30.769 0.00 0.00 0.00 2.27
54 55 7.424227 TCGTTATGTTTTCGTATTCACCTTT 57.576 32.000 0.00 0.00 0.00 3.11
55 56 7.424227 TTCGTTATGTTTTCGTATTCACCTT 57.576 32.000 0.00 0.00 0.00 3.50
56 57 7.041916 TGTTTCGTTATGTTTTCGTATTCACCT 60.042 33.333 0.00 0.00 0.00 4.00
57 58 7.070798 TGTTTCGTTATGTTTTCGTATTCACC 58.929 34.615 0.00 0.00 0.00 4.02
58 59 8.649810 ATGTTTCGTTATGTTTTCGTATTCAC 57.350 30.769 0.00 0.00 0.00 3.18
62 63 9.627657 CGAATATGTTTCGTTATGTTTTCGTAT 57.372 29.630 4.88 0.00 37.18 3.06
63 64 8.858186 TCGAATATGTTTCGTTATGTTTTCGTA 58.142 29.630 11.02 0.00 42.09 3.43
64 65 7.731720 TCGAATATGTTTCGTTATGTTTTCGT 58.268 30.769 11.02 0.00 42.09 3.85
65 66 8.747759 ATCGAATATGTTTCGTTATGTTTTCG 57.252 30.769 11.02 0.00 42.09 3.46
72 73 9.940166 GGGTTTTAATCGAATATGTTTCGTTAT 57.060 29.630 11.02 0.00 42.09 1.89
73 74 8.397148 GGGGTTTTAATCGAATATGTTTCGTTA 58.603 33.333 11.02 7.53 42.09 3.18
74 75 7.094291 TGGGGTTTTAATCGAATATGTTTCGTT 60.094 33.333 11.02 8.22 42.09 3.85
75 76 6.374894 TGGGGTTTTAATCGAATATGTTTCGT 59.625 34.615 11.02 0.00 42.09 3.85
76 77 6.689669 GTGGGGTTTTAATCGAATATGTTTCG 59.310 38.462 6.35 6.35 42.74 3.46
77 78 7.540299 TGTGGGGTTTTAATCGAATATGTTTC 58.460 34.615 0.00 0.00 0.00 2.78
78 79 7.469537 TGTGGGGTTTTAATCGAATATGTTT 57.530 32.000 0.00 0.00 0.00 2.83
79 80 7.469537 TTGTGGGGTTTTAATCGAATATGTT 57.530 32.000 0.00 0.00 0.00 2.71
80 81 7.469537 TTTGTGGGGTTTTAATCGAATATGT 57.530 32.000 0.00 0.00 0.00 2.29
81 82 8.652463 GTTTTTGTGGGGTTTTAATCGAATATG 58.348 33.333 0.00 0.00 0.00 1.78
82 83 8.368668 TGTTTTTGTGGGGTTTTAATCGAATAT 58.631 29.630 0.00 0.00 0.00 1.28
83 84 7.723324 TGTTTTTGTGGGGTTTTAATCGAATA 58.277 30.769 0.00 0.00 0.00 1.75
84 85 6.583562 TGTTTTTGTGGGGTTTTAATCGAAT 58.416 32.000 0.00 0.00 0.00 3.34
85 86 5.974108 TGTTTTTGTGGGGTTTTAATCGAA 58.026 33.333 0.00 0.00 0.00 3.71
86 87 5.593679 TGTTTTTGTGGGGTTTTAATCGA 57.406 34.783 0.00 0.00 0.00 3.59
87 88 7.276878 GGATATGTTTTTGTGGGGTTTTAATCG 59.723 37.037 0.00 0.00 0.00 3.34
88 89 8.097662 TGGATATGTTTTTGTGGGGTTTTAATC 58.902 33.333 0.00 0.00 0.00 1.75
89 90 7.978925 TGGATATGTTTTTGTGGGGTTTTAAT 58.021 30.769 0.00 0.00 0.00 1.40
90 91 7.374975 TGGATATGTTTTTGTGGGGTTTTAA 57.625 32.000 0.00 0.00 0.00 1.52
91 92 6.996180 TGGATATGTTTTTGTGGGGTTTTA 57.004 33.333 0.00 0.00 0.00 1.52
92 93 5.896073 TGGATATGTTTTTGTGGGGTTTT 57.104 34.783 0.00 0.00 0.00 2.43
93 94 5.896073 TTGGATATGTTTTTGTGGGGTTT 57.104 34.783 0.00 0.00 0.00 3.27
94 95 6.446909 AATTGGATATGTTTTTGTGGGGTT 57.553 33.333 0.00 0.00 0.00 4.11
95 96 7.560796 TTAATTGGATATGTTTTTGTGGGGT 57.439 32.000 0.00 0.00 0.00 4.95
96 97 8.100164 AGTTTAATTGGATATGTTTTTGTGGGG 58.900 33.333 0.00 0.00 0.00 4.96
148 149 7.005709 TGTTTGGAAAAGGTTGGTTTCTTTA 57.994 32.000 0.00 0.00 35.68 1.85
156 157 8.894768 TGTATTTTATGTTTGGAAAAGGTTGG 57.105 30.769 0.00 0.00 0.00 3.77
199 200 9.667107 ACTCGAATTTATTCCACTCTCATTTAA 57.333 29.630 0.00 0.00 33.28 1.52
234 235 9.357652 CCACCTTGTGTTTTTATTGAGATATTG 57.642 33.333 0.00 0.00 0.00 1.90
235 236 9.308000 TCCACCTTGTGTTTTTATTGAGATATT 57.692 29.630 0.00 0.00 0.00 1.28
236 237 8.877864 TCCACCTTGTGTTTTTATTGAGATAT 57.122 30.769 0.00 0.00 0.00 1.63
238 239 7.595819 TTCCACCTTGTGTTTTTATTGAGAT 57.404 32.000 0.00 0.00 0.00 2.75
241 242 7.118496 ACATTCCACCTTGTGTTTTTATTGA 57.882 32.000 0.00 0.00 0.00 2.57
242 243 6.983307 TGACATTCCACCTTGTGTTTTTATTG 59.017 34.615 0.00 0.00 0.00 1.90
243 244 7.118496 TGACATTCCACCTTGTGTTTTTATT 57.882 32.000 0.00 0.00 0.00 1.40
247 248 5.612725 AATGACATTCCACCTTGTGTTTT 57.387 34.783 0.00 0.00 0.00 2.43
276 277 6.342338 TCTTACAAGACCTCTCAACCTAAC 57.658 41.667 0.00 0.00 0.00 2.34
284 285 3.181470 GGGAGCATCTTACAAGACCTCTC 60.181 52.174 15.48 11.06 37.98 3.20
298 299 1.115930 TTCGGCTAGGAGGGAGCATC 61.116 60.000 0.00 0.00 41.98 3.91
325 326 4.083217 CGGTGATAGCTAGTACAGACCATC 60.083 50.000 0.00 0.00 0.00 3.51
334 335 3.558746 GGCCTCTACGGTGATAGCTAGTA 60.559 52.174 0.00 0.00 34.25 1.82
336 337 1.813786 GGCCTCTACGGTGATAGCTAG 59.186 57.143 0.00 0.00 34.25 3.42
342 343 2.643551 CATTTTGGCCTCTACGGTGAT 58.356 47.619 3.32 0.00 34.25 3.06
355 356 3.519107 AGGGCCAGTTTTATCCATTTTGG 59.481 43.478 6.18 0.00 39.43 3.28
357 358 6.902974 AGATAAGGGCCAGTTTTATCCATTTT 59.097 34.615 15.77 0.09 35.42 1.82
358 359 6.443832 AGATAAGGGCCAGTTTTATCCATTT 58.556 36.000 15.77 0.37 35.42 2.32
360 361 5.669798 AGATAAGGGCCAGTTTTATCCAT 57.330 39.130 15.77 1.21 35.42 3.41
361 362 6.584471 TTAGATAAGGGCCAGTTTTATCCA 57.416 37.500 15.77 4.17 35.42 3.41
362 363 6.016192 GCTTTAGATAAGGGCCAGTTTTATCC 60.016 42.308 15.77 2.00 35.42 2.59
364 365 6.673583 AGCTTTAGATAAGGGCCAGTTTTAT 58.326 36.000 6.18 0.06 0.00 1.40
366 367 4.935578 AGCTTTAGATAAGGGCCAGTTTT 58.064 39.130 6.18 0.00 0.00 2.43
367 368 4.592997 AGCTTTAGATAAGGGCCAGTTT 57.407 40.909 6.18 0.00 0.00 2.66
368 369 4.018415 TGAAGCTTTAGATAAGGGCCAGTT 60.018 41.667 6.18 0.00 0.00 3.16
370 371 4.156455 TGAAGCTTTAGATAAGGGCCAG 57.844 45.455 6.18 0.00 0.00 4.85
371 372 4.263727 TGTTGAAGCTTTAGATAAGGGCCA 60.264 41.667 6.18 0.00 0.00 5.36
372 373 4.096532 GTGTTGAAGCTTTAGATAAGGGCC 59.903 45.833 0.00 0.00 0.00 5.80
374 375 6.817765 TTGTGTTGAAGCTTTAGATAAGGG 57.182 37.500 0.00 0.00 0.00 3.95
375 376 9.132521 CATTTTGTGTTGAAGCTTTAGATAAGG 57.867 33.333 0.00 0.00 0.00 2.69
376 377 9.132521 CCATTTTGTGTTGAAGCTTTAGATAAG 57.867 33.333 0.00 0.00 0.00 1.73
377 378 7.598493 GCCATTTTGTGTTGAAGCTTTAGATAA 59.402 33.333 0.00 0.00 0.00 1.75
379 380 5.928264 GCCATTTTGTGTTGAAGCTTTAGAT 59.072 36.000 0.00 0.00 0.00 1.98
380 381 5.288804 GCCATTTTGTGTTGAAGCTTTAGA 58.711 37.500 0.00 0.00 0.00 2.10
381 382 4.448732 GGCCATTTTGTGTTGAAGCTTTAG 59.551 41.667 0.00 0.00 0.00 1.85
384 385 2.485302 GGGCCATTTTGTGTTGAAGCTT 60.485 45.455 4.39 0.00 0.00 3.74
386 387 1.202627 TGGGCCATTTTGTGTTGAAGC 60.203 47.619 0.00 0.00 0.00 3.86
387 388 2.906691 TGGGCCATTTTGTGTTGAAG 57.093 45.000 0.00 0.00 0.00 3.02
389 390 3.390639 AGATTTGGGCCATTTTGTGTTGA 59.609 39.130 7.26 0.00 0.00 3.18
390 391 3.499157 CAGATTTGGGCCATTTTGTGTTG 59.501 43.478 7.26 0.00 0.00 3.33
391 392 3.390639 TCAGATTTGGGCCATTTTGTGTT 59.609 39.130 7.26 0.00 0.00 3.32
393 394 3.681593 TCAGATTTGGGCCATTTTGTG 57.318 42.857 7.26 4.31 0.00 3.33
394 395 4.914177 ATTCAGATTTGGGCCATTTTGT 57.086 36.364 7.26 0.00 0.00 2.83
395 396 6.578163 AAAATTCAGATTTGGGCCATTTTG 57.422 33.333 7.26 4.01 35.69 2.44
417 418 1.710816 AGGGGCCATTTCGTGAAAAA 58.289 45.000 4.39 0.00 33.56 1.94
418 419 1.710816 AAGGGGCCATTTCGTGAAAA 58.289 45.000 4.39 0.00 33.56 2.29
419 420 1.710816 AAAGGGGCCATTTCGTGAAA 58.289 45.000 10.95 0.00 34.46 2.69
422 423 0.670239 GCAAAAGGGGCCATTTCGTG 60.670 55.000 17.49 13.38 0.00 4.35
423 424 1.118356 TGCAAAAGGGGCCATTTCGT 61.118 50.000 17.49 0.00 0.00 3.85
424 425 0.249955 ATGCAAAAGGGGCCATTTCG 59.750 50.000 17.49 6.98 0.00 3.46
425 426 1.278699 TCATGCAAAAGGGGCCATTTC 59.721 47.619 17.49 6.02 0.00 2.17
426 427 1.003464 GTCATGCAAAAGGGGCCATTT 59.997 47.619 10.95 10.95 0.00 2.32
429 430 2.274645 CGTCATGCAAAAGGGGCCA 61.275 57.895 4.39 0.00 0.00 5.36
430 431 2.573340 CGTCATGCAAAAGGGGCC 59.427 61.111 0.00 0.00 0.00 5.80
431 432 2.125952 GCGTCATGCAAAAGGGGC 60.126 61.111 0.00 0.00 45.45 5.80
472 473 1.135546 CCGAGGCGTCATGCTATCTAG 60.136 57.143 7.26 0.00 45.43 2.43
474 475 1.662608 CCGAGGCGTCATGCTATCT 59.337 57.895 7.26 0.00 45.43 1.98
475 476 1.373497 CCCGAGGCGTCATGCTATC 60.373 63.158 7.26 0.00 45.43 2.08
476 477 1.686325 AACCCGAGGCGTCATGCTAT 61.686 55.000 7.26 0.00 45.43 2.97
477 478 1.038681 TAACCCGAGGCGTCATGCTA 61.039 55.000 7.26 0.00 45.43 3.49
478 479 2.298158 CTAACCCGAGGCGTCATGCT 62.298 60.000 7.26 0.00 45.43 3.79
479 480 1.883084 CTAACCCGAGGCGTCATGC 60.883 63.158 7.26 0.00 45.38 4.06
480 481 1.227263 CCTAACCCGAGGCGTCATG 60.227 63.158 7.26 0.00 0.00 3.07
483 484 4.525949 GCCCTAACCCGAGGCGTC 62.526 72.222 0.00 0.00 36.84 5.19
486 487 4.525949 GACGCCCTAACCCGAGGC 62.526 72.222 0.00 0.00 43.53 4.70
487 488 2.432300 ATGACGCCCTAACCCGAGG 61.432 63.158 0.00 0.00 36.23 4.63
489 490 2.897207 CATGACGCCCTAACCCGA 59.103 61.111 0.00 0.00 0.00 5.14
490 491 2.023414 TAGCATGACGCCCTAACCCG 62.023 60.000 0.00 0.00 44.04 5.28
491 492 0.396811 ATAGCATGACGCCCTAACCC 59.603 55.000 0.00 0.00 44.04 4.11
493 494 2.290641 CCAAATAGCATGACGCCCTAAC 59.709 50.000 0.00 0.00 44.04 2.34
495 496 1.813862 GCCAAATAGCATGACGCCCTA 60.814 52.381 0.00 0.00 44.04 3.53
497 498 1.360192 GCCAAATAGCATGACGCCC 59.640 57.895 0.00 0.00 44.04 6.13
498 499 2.105984 TGCCAAATAGCATGACGCC 58.894 52.632 0.00 0.00 44.04 5.68
531 532 3.289834 CATGTAGCATGGCGCCCC 61.290 66.667 26.77 12.64 44.04 5.80
532 533 2.516930 ACATGTAGCATGGCGCCC 60.517 61.111 26.77 8.84 44.04 6.13
533 534 2.885676 CGACATGTAGCATGGCGCC 61.886 63.158 22.73 22.73 43.99 6.53
534 535 2.628106 CGACATGTAGCATGGCGC 59.372 61.111 21.77 0.00 43.99 6.53
536 537 1.728971 GATAGCGACATGTAGCATGGC 59.271 52.381 29.04 13.70 33.49 4.40
537 538 3.030668 TGATAGCGACATGTAGCATGG 57.969 47.619 29.04 3.37 33.49 3.66
538 539 4.091075 GTCATGATAGCGACATGTAGCATG 59.909 45.833 29.04 21.83 42.05 4.06
540 541 3.642705 GTCATGATAGCGACATGTAGCA 58.357 45.455 29.04 17.00 43.56 3.49
542 543 3.890128 ACGTCATGATAGCGACATGTAG 58.110 45.455 10.77 0.00 43.56 2.74
543 544 3.982576 ACGTCATGATAGCGACATGTA 57.017 42.857 10.77 0.00 43.56 2.29
544 545 2.860136 CAACGTCATGATAGCGACATGT 59.140 45.455 10.77 0.00 43.56 3.21
545 546 2.860136 ACAACGTCATGATAGCGACATG 59.140 45.455 10.77 12.25 44.20 3.21
548 549 2.534939 GCAACAACGTCATGATAGCGAC 60.535 50.000 10.77 0.00 0.00 5.19
549 550 1.658596 GCAACAACGTCATGATAGCGA 59.341 47.619 10.77 0.00 0.00 4.93
550 551 1.267532 GGCAACAACGTCATGATAGCG 60.268 52.381 0.00 0.00 0.00 4.26
551 552 2.009774 AGGCAACAACGTCATGATAGC 58.990 47.619 0.00 0.00 41.41 2.97
553 554 2.355197 CCAGGCAACAACGTCATGATA 58.645 47.619 0.00 0.00 41.41 2.15
554 555 1.167851 CCAGGCAACAACGTCATGAT 58.832 50.000 0.00 0.00 41.41 2.45
556 557 1.580942 CCCAGGCAACAACGTCATG 59.419 57.895 0.00 0.00 41.41 3.07
557 558 1.603455 CCCCAGGCAACAACGTCAT 60.603 57.895 0.00 0.00 41.41 3.06
569 570 1.472480 CTTTTACATTGACGCCCCAGG 59.528 52.381 0.00 0.00 0.00 4.45
570 571 2.420022 CTCTTTTACATTGACGCCCCAG 59.580 50.000 0.00 0.00 0.00 4.45
571 572 2.432444 CTCTTTTACATTGACGCCCCA 58.568 47.619 0.00 0.00 0.00 4.96
573 574 1.743394 CCCTCTTTTACATTGACGCCC 59.257 52.381 0.00 0.00 0.00 6.13
574 575 1.132453 GCCCTCTTTTACATTGACGCC 59.868 52.381 0.00 0.00 0.00 5.68
575 576 1.810151 TGCCCTCTTTTACATTGACGC 59.190 47.619 0.00 0.00 0.00 5.19
578 579 6.662865 TGAAATTGCCCTCTTTTACATTGA 57.337 33.333 0.00 0.00 0.00 2.57
582 583 6.662865 TTCATGAAATTGCCCTCTTTTACA 57.337 33.333 5.45 0.00 0.00 2.41
583 584 9.822185 ATATTTCATGAAATTGCCCTCTTTTAC 57.178 29.630 32.57 0.00 40.99 2.01
586 587 9.743581 AAAATATTTCATGAAATTGCCCTCTTT 57.256 25.926 32.57 19.14 40.99 2.52
587 588 9.387257 GAAAATATTTCATGAAATTGCCCTCTT 57.613 29.630 32.57 18.26 40.99 2.85
588 589 8.542080 TGAAAATATTTCATGAAATTGCCCTCT 58.458 29.630 32.57 13.97 40.99 3.69
589 590 8.721019 TGAAAATATTTCATGAAATTGCCCTC 57.279 30.769 32.57 22.66 40.99 4.30
590 591 8.542080 TCTGAAAATATTTCATGAAATTGCCCT 58.458 29.630 32.57 15.29 40.99 5.19
591 592 8.721019 TCTGAAAATATTTCATGAAATTGCCC 57.279 30.769 32.57 19.96 40.99 5.36
599 600 9.465199 TGACCTCAATCTGAAAATATTTCATGA 57.535 29.630 0.10 6.69 0.00 3.07
606 607 9.865321 CACAAAATGACCTCAATCTGAAAATAT 57.135 29.630 0.00 0.00 0.00 1.28
607 608 8.859090 ACACAAAATGACCTCAATCTGAAAATA 58.141 29.630 0.00 0.00 0.00 1.40
608 609 7.729116 ACACAAAATGACCTCAATCTGAAAAT 58.271 30.769 0.00 0.00 0.00 1.82
609 610 7.111247 ACACAAAATGACCTCAATCTGAAAA 57.889 32.000 0.00 0.00 0.00 2.29
610 611 6.713762 ACACAAAATGACCTCAATCTGAAA 57.286 33.333 0.00 0.00 0.00 2.69
611 612 6.320926 TCAACACAAAATGACCTCAATCTGAA 59.679 34.615 0.00 0.00 0.00 3.02
612 613 5.827267 TCAACACAAAATGACCTCAATCTGA 59.173 36.000 0.00 0.00 0.00 3.27
613 614 6.075762 TCAACACAAAATGACCTCAATCTG 57.924 37.500 0.00 0.00 0.00 2.90
614 615 6.322201 ACTTCAACACAAAATGACCTCAATCT 59.678 34.615 0.00 0.00 0.00 2.40
615 616 6.507023 ACTTCAACACAAAATGACCTCAATC 58.493 36.000 0.00 0.00 0.00 2.67
616 617 6.469782 ACTTCAACACAAAATGACCTCAAT 57.530 33.333 0.00 0.00 0.00 2.57
619 1600 6.329496 TGAAACTTCAACACAAAATGACCTC 58.671 36.000 0.00 0.00 33.55 3.85
620 1601 6.152661 TCTGAAACTTCAACACAAAATGACCT 59.847 34.615 0.00 0.00 36.64 3.85
629 1610 6.826231 TGTCCTTTATCTGAAACTTCAACACA 59.174 34.615 0.00 0.00 36.64 3.72
635 1616 8.787852 ACAAATCTGTCCTTTATCTGAAACTTC 58.212 33.333 0.00 0.00 0.00 3.01
638 1619 8.567948 TGAACAAATCTGTCCTTTATCTGAAAC 58.432 33.333 0.00 0.00 33.45 2.78
639 1620 8.690203 TGAACAAATCTGTCCTTTATCTGAAA 57.310 30.769 0.00 0.00 33.45 2.69
640 1621 8.868522 ATGAACAAATCTGTCCTTTATCTGAA 57.131 30.769 0.00 0.00 33.45 3.02
644 1625 9.912634 TGAAAATGAACAAATCTGTCCTTTATC 57.087 29.630 0.00 0.00 33.45 1.75
646 1627 7.860373 CGTGAAAATGAACAAATCTGTCCTTTA 59.140 33.333 0.00 0.00 33.45 1.85
649 1630 5.278463 CCGTGAAAATGAACAAATCTGTCCT 60.278 40.000 0.00 0.00 33.45 3.85
650 1631 4.917415 CCGTGAAAATGAACAAATCTGTCC 59.083 41.667 0.00 0.00 33.45 4.02
651 1632 4.382754 GCCGTGAAAATGAACAAATCTGTC 59.617 41.667 0.00 0.00 33.45 3.51
653 1634 3.674753 GGCCGTGAAAATGAACAAATCTG 59.325 43.478 0.00 0.00 0.00 2.90
655 1636 3.648009 TGGCCGTGAAAATGAACAAATC 58.352 40.909 0.00 0.00 0.00 2.17
656 1637 3.742433 TGGCCGTGAAAATGAACAAAT 57.258 38.095 0.00 0.00 0.00 2.32
657 1638 3.742433 ATGGCCGTGAAAATGAACAAA 57.258 38.095 0.00 0.00 0.00 2.83
658 1639 3.823873 ACTATGGCCGTGAAAATGAACAA 59.176 39.130 8.05 0.00 0.00 2.83
659 1640 3.417101 ACTATGGCCGTGAAAATGAACA 58.583 40.909 8.05 0.00 0.00 3.18
660 1641 4.165779 CAACTATGGCCGTGAAAATGAAC 58.834 43.478 8.05 0.00 0.00 3.18
661 1642 3.366883 GCAACTATGGCCGTGAAAATGAA 60.367 43.478 8.05 0.00 0.00 2.57
662 1643 2.163412 GCAACTATGGCCGTGAAAATGA 59.837 45.455 8.05 0.00 0.00 2.57
663 1644 2.164219 AGCAACTATGGCCGTGAAAATG 59.836 45.455 8.05 0.80 0.00 2.32
664 1645 2.164219 CAGCAACTATGGCCGTGAAAAT 59.836 45.455 8.05 0.00 0.00 1.82
665 1646 1.539388 CAGCAACTATGGCCGTGAAAA 59.461 47.619 8.05 0.00 0.00 2.29
666 1647 1.164411 CAGCAACTATGGCCGTGAAA 58.836 50.000 8.05 0.00 0.00 2.69
667 1648 0.036164 ACAGCAACTATGGCCGTGAA 59.964 50.000 8.05 0.00 0.00 3.18
671 1652 0.657840 GCTAACAGCAACTATGGCCG 59.342 55.000 0.00 0.00 41.89 6.13
710 3491 3.186909 CGGCTCAGATCACGTCATTAAA 58.813 45.455 0.00 0.00 0.00 1.52
749 3530 0.039346 TGATCGACGCAACGGTTGTA 60.039 50.000 20.92 4.08 0.00 2.41
779 3560 4.924305 ATTATAAGCGGAGAACGTACCA 57.076 40.909 0.00 0.00 46.52 3.25
866 3648 2.442272 TGCCCCTCTAGGACTCGC 60.442 66.667 0.00 0.00 38.24 5.03
867 3649 1.104577 GTCTGCCCCTCTAGGACTCG 61.105 65.000 0.00 0.00 38.24 4.18
869 3651 1.076632 CGTCTGCCCCTCTAGGACT 60.077 63.158 0.00 0.00 38.24 3.85
872 3654 1.104577 GTCTCGTCTGCCCCTCTAGG 61.105 65.000 0.00 0.00 0.00 3.02
873 3655 1.440938 CGTCTCGTCTGCCCCTCTAG 61.441 65.000 0.00 0.00 0.00 2.43
874 3656 1.451567 CGTCTCGTCTGCCCCTCTA 60.452 63.158 0.00 0.00 0.00 2.43
875 3657 2.752238 CGTCTCGTCTGCCCCTCT 60.752 66.667 0.00 0.00 0.00 3.69
1173 3971 2.294078 CGAACCTTCCAGGAGGCCT 61.294 63.158 3.86 3.86 40.65 5.19
1241 4058 8.553696 CGTACAGATGAATCAATCAATCAATCA 58.446 33.333 0.00 0.00 42.54 2.57
1242 4059 8.554528 ACGTACAGATGAATCAATCAATCAATC 58.445 33.333 0.00 0.00 42.54 2.67
1243 4060 8.442632 ACGTACAGATGAATCAATCAATCAAT 57.557 30.769 0.00 0.00 42.54 2.57
1244 4061 7.848223 ACGTACAGATGAATCAATCAATCAA 57.152 32.000 0.00 0.00 42.54 2.57
1258 4077 3.373748 TGCTTGCCAAATACGTACAGATG 59.626 43.478 0.00 0.00 0.00 2.90
1346 4173 6.127451 ACTCTAACAAGAAAACCCACAAAAGG 60.127 38.462 0.00 0.00 0.00 3.11
1367 4194 0.250814 AGTTCACCCGACGAGACTCT 60.251 55.000 0.00 0.00 0.00 3.24
1377 4204 0.606401 AATCAGCACCAGTTCACCCG 60.606 55.000 0.00 0.00 0.00 5.28
1501 4494 0.930726 AAACACCTCCTTTGGTCCCA 59.069 50.000 0.00 0.00 38.45 4.37
1558 4551 6.070824 TGTCCATCACAAAGTAAGATAGCTGA 60.071 38.462 0.00 0.00 29.30 4.26
1643 4636 4.039488 ACCCAGTACACAAACATAACTCGA 59.961 41.667 0.00 0.00 0.00 4.04
1645 4638 5.178809 GTCACCCAGTACACAAACATAACTC 59.821 44.000 0.00 0.00 0.00 3.01
1734 4727 1.564348 ACGGGCACAGAAGGGATATTT 59.436 47.619 0.00 0.00 0.00 1.40
1802 4795 9.622004 CATCTGCTAATTTTTATATGCCTGAAG 57.378 33.333 0.00 0.00 0.00 3.02
1811 4804 8.514594 GCCATACTGCATCTGCTAATTTTTATA 58.485 33.333 3.53 0.00 42.66 0.98
1820 4813 0.752658 ACGCCATACTGCATCTGCTA 59.247 50.000 3.53 0.00 42.66 3.49
1842 4835 2.735134 GTTACCTGTAAACAGAGGCACG 59.265 50.000 11.69 0.00 46.59 5.34
1859 4852 5.880054 ATCACAATACAGTTGCAGGTTAC 57.120 39.130 0.00 0.00 0.00 2.50
1867 4860 6.306356 GCACAGCTAAAATCACAATACAGTTG 59.694 38.462 0.00 0.00 0.00 3.16
1955 4948 6.406400 CGTAAGATCCAGAGAGAGGAACAAAT 60.406 42.308 0.00 0.00 38.93 2.32
2254 5247 1.482182 AGAGGTGCGCATTCAGTATCA 59.518 47.619 15.91 0.00 0.00 2.15
2549 5544 7.903995 AATAATGAATTTGAACGGTGCAATT 57.096 28.000 1.60 0.00 0.00 2.32
2614 5609 5.859495 TGGAAAACAAATACAAATGGGACC 58.141 37.500 0.00 0.00 0.00 4.46
2615 5610 6.754193 TCTGGAAAACAAATACAAATGGGAC 58.246 36.000 0.00 0.00 0.00 4.46
2624 5619 8.831715 AATTGGAACATCTGGAAAACAAATAC 57.168 30.769 0.00 0.00 39.30 1.89
2682 5677 1.572415 TGGGACGGAGGGAGTACTAAT 59.428 52.381 0.00 0.00 0.00 1.73
2710 5769 7.781548 ACTACATTAGTGTCAAAAACGTTCT 57.218 32.000 0.00 0.00 39.77 3.01
2724 5783 5.989777 AGAGCGTTTTTGACACTACATTAGT 59.010 36.000 0.00 0.00 40.28 2.24
2725 5784 6.467723 AGAGCGTTTTTGACACTACATTAG 57.532 37.500 0.00 0.00 0.00 1.73
2726 5785 6.854496 AAGAGCGTTTTTGACACTACATTA 57.146 33.333 0.00 0.00 0.00 1.90
2727 5786 5.751243 AAGAGCGTTTTTGACACTACATT 57.249 34.783 0.00 0.00 0.00 2.71
2728 5787 8.718102 ATATAAGAGCGTTTTTGACACTACAT 57.282 30.769 0.00 0.00 0.00 2.29
2729 5788 8.542497 AATATAAGAGCGTTTTTGACACTACA 57.458 30.769 0.00 0.00 0.00 2.74
2788 5868 6.073058 CGGCATACACATCTTTGCATACTTAT 60.073 38.462 0.00 0.00 36.82 1.73
2798 5878 3.543680 AGCTACGGCATACACATCTTT 57.456 42.857 0.00 0.00 41.70 2.52
2812 5892 4.227538 CGATTCCACCATAGTAAGCTACG 58.772 47.826 0.00 0.00 0.00 3.51
2815 5895 2.434336 TGCGATTCCACCATAGTAAGCT 59.566 45.455 0.00 0.00 0.00 3.74
2959 6134 6.743575 AGGCAATCACACTAAATCAGTAAC 57.256 37.500 0.00 0.00 34.98 2.50
2980 6155 6.688073 TCTCTCCTATATAAGCCCAAAAGG 57.312 41.667 0.00 0.00 39.47 3.11
3047 6222 8.830915 TGGATTCTTCTATAGAGTCAACTTCT 57.169 34.615 2.02 0.00 40.42 2.85
3164 6339 3.762288 GAGGGGAAATACCAACCTTCAAC 59.238 47.826 0.00 0.00 41.20 3.18
3267 6442 6.909550 ATAGCAATTGACCCACTTTTAACA 57.090 33.333 10.34 0.00 0.00 2.41
3375 6550 6.877668 TTACCAATGGGATACTTGTAGACA 57.122 37.500 3.55 0.00 38.05 3.41
3400 6575 0.036010 CCTACTGGTTGCACCCTCAG 60.036 60.000 0.57 2.71 37.50 3.35
3408 6583 4.392940 AGATGATAATGCCTACTGGTTGC 58.607 43.478 0.00 0.00 35.27 4.17
3503 6678 5.209240 TCGTTTAAAATTTGAAGACAGCGG 58.791 37.500 0.00 0.00 0.00 5.52
3543 6718 6.375455 GCTTGAAGAAATACTTGGAATCCTGA 59.625 38.462 0.00 0.00 39.13 3.86
3584 6759 3.587797 TTATCTGGAGTCACGTTCACC 57.412 47.619 0.00 0.00 0.00 4.02
3662 6837 0.326264 AGAACCACAGGGCTAGCTTG 59.674 55.000 15.72 15.44 37.90 4.01
3692 6867 3.737047 CGCGGACTATGTTGTTACCAGAT 60.737 47.826 0.00 0.00 0.00 2.90
3789 6964 6.430864 TGATCCTGTGAAAAATAGCCCATTA 58.569 36.000 0.00 0.00 0.00 1.90
3988 7163 8.420222 ACTGAAATTGGTGTTTCATATGTCAAA 58.580 29.630 1.90 0.00 44.48 2.69
4037 7228 8.070171 CAGATGTTCTTGTACGAAACATTTTCT 58.930 33.333 16.62 10.51 38.10 2.52
4044 7235 6.643770 TCCTAACAGATGTTCTTGTACGAAAC 59.356 38.462 0.59 0.00 39.31 2.78
4048 7239 5.466819 TGTCCTAACAGATGTTCTTGTACG 58.533 41.667 0.59 0.00 39.31 3.67
4062 7253 5.417580 GGCCTACAATCAATTTGTCCTAACA 59.582 40.000 0.00 0.00 45.55 2.41
4102 7293 7.768582 TGTTTCATACTGTTTGAGTCTTTGAGA 59.231 33.333 1.40 0.00 35.96 3.27
4142 7333 6.327386 AGGGCCTGATTCTTCAACTTTATA 57.673 37.500 4.50 0.00 0.00 0.98
4168 7359 6.199937 AGGTTTCTTCAATGGAAATCGATG 57.800 37.500 0.00 0.00 38.42 3.84
4169 7360 5.358160 GGAGGTTTCTTCAATGGAAATCGAT 59.642 40.000 0.00 0.00 38.42 3.59
4182 7373 6.859017 TGTTAAAACTGTTGGAGGTTTCTTC 58.141 36.000 0.00 0.00 40.98 2.87
4361 7552 6.987386 ACTAGTGATACTGCATCAAGGATAC 58.013 40.000 0.00 0.00 45.28 2.24
4380 7571 4.211920 GAGGAGCTGATTCACCTACTAGT 58.788 47.826 0.00 0.00 32.53 2.57
4401 7592 0.036732 ACTTCTGCAGCATTTCCGGA 59.963 50.000 9.47 0.00 0.00 5.14
4404 7595 2.294233 TGTCAACTTCTGCAGCATTTCC 59.706 45.455 9.47 0.00 0.00 3.13
4523 7714 7.649306 AGCATGAAAAATAACGGAAATAGATGC 59.351 33.333 0.00 0.00 0.00 3.91
4601 7793 7.262048 TCAAACAGATGCGTGATATAGTACAA 58.738 34.615 0.00 0.00 0.00 2.41
4638 7836 3.044059 GAATCAGTGCAGCACCCGC 62.044 63.158 22.41 3.94 34.49 6.13
4639 7837 0.108186 TAGAATCAGTGCAGCACCCG 60.108 55.000 22.41 13.77 34.49 5.28
4640 7838 2.012673 CTTAGAATCAGTGCAGCACCC 58.987 52.381 22.41 6.64 34.49 4.61
4641 7839 2.417933 CACTTAGAATCAGTGCAGCACC 59.582 50.000 22.41 6.27 35.52 5.01
4642 7840 3.329386 TCACTTAGAATCAGTGCAGCAC 58.671 45.455 18.55 18.55 41.37 4.40
4643 7841 3.683365 TCACTTAGAATCAGTGCAGCA 57.317 42.857 0.00 0.00 41.37 4.41
4724 7922 9.142515 CATTTGTTTATGCAGTATTGTGTCAAT 57.857 29.630 0.00 0.80 0.00 2.57
4746 7944 1.167851 CCACCGTGCACATCTCATTT 58.832 50.000 18.64 0.00 0.00 2.32
4770 7968 3.102972 TGAAGCTACTGAATCCAGCTCT 58.897 45.455 2.34 0.00 44.70 4.09
4773 7971 4.697514 TGTATGAAGCTACTGAATCCAGC 58.302 43.478 0.00 0.00 44.16 4.85
4821 8019 5.673337 TGAGTTGTGAAGTTCATACAAGC 57.327 39.130 9.18 5.67 35.24 4.01
4923 8121 5.596845 AGTTCTTCGATCTTTATCTGGAGC 58.403 41.667 0.00 0.00 0.00 4.70
4959 8157 1.072505 AAGGTGAACGAATGCCCGT 59.927 52.632 0.00 0.00 45.64 5.28
5040 8238 4.876107 ACGGTGAATTCAGATGGTAATCAC 59.124 41.667 8.80 0.00 35.03 3.06
5071 8269 5.232463 CAAGCAAAATAGCCAACATCTTGT 58.768 37.500 0.00 0.00 34.23 3.16
5108 8306 3.614150 CGCAAGACACCATGTACTGTAGT 60.614 47.826 0.00 0.00 43.02 2.73
5131 8329 5.684704 CTCAACTTCAGCCCTTCCATATAA 58.315 41.667 0.00 0.00 0.00 0.98
5297 8495 0.899717 TTTCCACATTGCAGCCCTCC 60.900 55.000 0.00 0.00 0.00 4.30
5317 8515 2.670414 TGCTTTCTTTTTGTGGCAAACG 59.330 40.909 0.00 0.00 0.00 3.60
5343 8541 5.931441 ACTGACTTTGAGCACATAGAAAC 57.069 39.130 8.46 1.46 0.00 2.78
5347 8545 5.911280 CACAAAACTGACTTTGAGCACATAG 59.089 40.000 11.87 0.33 38.35 2.23
5349 8547 4.398988 TCACAAAACTGACTTTGAGCACAT 59.601 37.500 11.87 0.00 38.35 3.21
5400 8598 1.481871 CTCCTTACGACCCTAGCCAA 58.518 55.000 0.00 0.00 0.00 4.52
5413 8611 1.076265 TGGGCTAGCTCGCTCCTTA 60.076 57.895 15.72 0.00 0.00 2.69
5485 8683 5.422331 TCAGAACTAACCCTTGGAGTCATAG 59.578 44.000 0.00 0.00 0.00 2.23
5766 8983 9.628746 TTACAAACATCGAGCGCTAATATATAA 57.371 29.630 11.50 0.00 0.00 0.98
5781 8998 6.140108 GCAAGTGTACAAACTTACAAACATCG 59.860 38.462 0.00 0.00 38.34 3.84
5810 9028 7.865706 AGTTGAGCCGTAAATAGATGATTTT 57.134 32.000 0.00 0.00 38.70 1.82
5834 9052 8.435931 AGTGGACCAATGCATAGATTAGTATA 57.564 34.615 0.00 0.00 0.00 1.47
5835 9053 7.321717 AGTGGACCAATGCATAGATTAGTAT 57.678 36.000 0.00 0.00 0.00 2.12
5920 9138 1.153549 GGGACCTTCGCTAGCTGTG 60.154 63.158 13.93 2.01 0.00 3.66
5921 9139 3.300013 GGGACCTTCGCTAGCTGT 58.700 61.111 13.93 4.47 0.00 4.40
5998 9216 8.992349 CCCACCAGATATTCATATGTATTCCTA 58.008 37.037 1.90 0.00 0.00 2.94
5999 9217 7.462328 ACCCACCAGATATTCATATGTATTCCT 59.538 37.037 1.90 0.00 0.00 3.36
6000 9218 7.633789 ACCCACCAGATATTCATATGTATTCC 58.366 38.462 1.90 0.00 0.00 3.01
6003 9221 8.267894 GCTTACCCACCAGATATTCATATGTAT 58.732 37.037 1.90 0.99 0.00 2.29
6004 9222 7.311046 GGCTTACCCACCAGATATTCATATGTA 60.311 40.741 1.90 0.00 0.00 2.29
6005 9223 6.476378 GCTTACCCACCAGATATTCATATGT 58.524 40.000 1.90 0.00 0.00 2.29
6006 9224 5.882557 GGCTTACCCACCAGATATTCATATG 59.117 44.000 0.00 0.00 0.00 1.78
6007 9225 5.551583 TGGCTTACCCACCAGATATTCATAT 59.448 40.000 0.00 0.00 39.18 1.78
6008 9226 4.910913 TGGCTTACCCACCAGATATTCATA 59.089 41.667 0.00 0.00 39.18 2.15
6009 9227 3.721575 TGGCTTACCCACCAGATATTCAT 59.278 43.478 0.00 0.00 39.18 2.57
6010 9228 3.119319 TGGCTTACCCACCAGATATTCA 58.881 45.455 0.00 0.00 39.18 2.57
6011 9229 3.857157 TGGCTTACCCACCAGATATTC 57.143 47.619 0.00 0.00 39.18 1.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.