AutoCloner

Multiple sequence alignment - TraesCS4B01G233000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G233000	chr4B	100.000	3259	0	0	1	3259	484106992	484103734	0.000000e+00	6019.0
1	TraesCS4B01G233000	chr4B	95.725	655	27	1	1	655	28681695	28682348	0.000000e+00	1053.0
2	TraesCS4B01G233000	chr4B	95.559	653	27	2	1	653	665293169	665293819	0.000000e+00	1044.0
3	TraesCS4B01G233000	chr4B	84.507	71	9	2	1170	1239	115101287	115101218	5.830000e-08	69.4
4	TraesCS4B01G233000	chr4D	94.001	1717	68	12	1296	2991	394379161	394377459	0.000000e+00	2567.0
5	TraesCS4B01G233000	chr4D	91.558	616	27	12	657	1272	394379743	394379153	0.000000e+00	826.0
6	TraesCS4B01G233000	chr4D	98.298	235	4	0	3025	3259	394377466	394377232	2.340000e-111	412.0
7	TraesCS4B01G233000	chr4D	81.690	213	33	5	1339	1548	394361875	394362084	4.320000e-39	172.0
8	TraesCS4B01G233000	chr4A	92.339	1462	51	23	1296	2723	75843100	75841666	0.000000e+00	2023.0
9	TraesCS4B01G233000	chr4A	95.413	545	13	4	2721	3257	75841595	75841055	0.000000e+00	857.0
10	TraesCS4B01G233000	chr4A	91.304	552	26	9	721	1272	75843621	75843092	0.000000e+00	734.0
11	TraesCS4B01G233000	chr4A	82.915	199	28	5	1353	1548	75466027	75466222	1.200000e-39	174.0
12	TraesCS4B01G233000	chr3B	95.725	655	25	2	1	653	171120731	171120078	0.000000e+00	1051.0
13	TraesCS4B01G233000	chr7B	95.573	655	25	4	1	655	664046970	664047620	0.000000e+00	1046.0
14	TraesCS4B01G233000	chr7B	81.373	204	30	7	1349	1548	578438822	578439021	3.370000e-35	159.0
15	TraesCS4B01G233000	chr6B	95.566	654	25	4	1	652	523045899	523046550	0.000000e+00	1044.0
16	TraesCS4B01G233000	chr6B	95.552	652	28	1	1	652	664618946	664619596	0.000000e+00	1042.0
17	TraesCS4B01G233000	chr6B	95.159	661	29	3	1	661	705992784	705993441	0.000000e+00	1040.0
18	TraesCS4B01G233000	chr3A	95.303	660	27	2	1	660	522044029	522043374	0.000000e+00	1044.0
19	TraesCS4B01G233000	chr5A	95.159	661	29	3	1	661	664389049	664389706	0.000000e+00	1040.0
20	TraesCS4B01G233000	chr5A	100.000	29	0	0	1205	1233	463765905	463765877	2.000000e-03	54.7
21	TraesCS4B01G233000	chr7D	81.373	204	30	7	1349	1548	535967325	535967524	3.370000e-35	159.0
22	TraesCS4B01G233000	chr7D	82.677	127	20	2	1400	1525	478576071	478576196	9.560000e-21	111.0
23	TraesCS4B01G233000	chr7D	100.000	31	0	0	1211	1241	479626261	479626231	1.260000e-04	58.4
24	TraesCS4B01G233000	chr7A	80.882	204	31	7	1349	1548	617385976	617385777	1.570000e-33	154.0
25	TraesCS4B01G233000	chr7A	100.000	31	0	0	1211	1241	515199566	515199596	1.260000e-04	58.4
26	TraesCS4B01G233000	chr1D	79.310	203	36	5	1349	1548	467611815	467611616	1.580000e-28	137.0
27	TraesCS4B01G233000	chr5D	100.000	32	0	0	1202	1233	362664805	362664774	3.510000e-05	60.2
28	TraesCS4B01G233000	chr5B	100.000	29	0	0	1205	1233	428963173	428963145	2.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G233000	chr4B	484103734	484106992	3258	True	6019.000000	6019	100.000000	1	3259	1	chr4B.!!$R2	3258
1	TraesCS4B01G233000	chr4B	28681695	28682348	653	False	1053.000000	1053	95.725000	1	655	1	chr4B.!!$F1	654
2	TraesCS4B01G233000	chr4B	665293169	665293819	650	False	1044.000000	1044	95.559000	1	653	1	chr4B.!!$F2	652
3	TraesCS4B01G233000	chr4D	394377232	394379743	2511	True	1268.333333	2567	94.619000	657	3259	3	chr4D.!!$R1	2602
4	TraesCS4B01G233000	chr4A	75841055	75843621	2566	True	1204.666667	2023	93.018667	721	3257	3	chr4A.!!$R1	2536
5	TraesCS4B01G233000	chr3B	171120078	171120731	653	True	1051.000000	1051	95.725000	1	653	1	chr3B.!!$R1	652
6	TraesCS4B01G233000	chr7B	664046970	664047620	650	False	1046.000000	1046	95.573000	1	655	1	chr7B.!!$F2	654
7	TraesCS4B01G233000	chr6B	523045899	523046550	651	False	1044.000000	1044	95.566000	1	652	1	chr6B.!!$F1	651
8	TraesCS4B01G233000	chr6B	664618946	664619596	650	False	1042.000000	1042	95.552000	1	652	1	chr6B.!!$F2	651
9	TraesCS4B01G233000	chr6B	705992784	705993441	657	False	1040.000000	1040	95.159000	1	661	1	chr6B.!!$F3	660
10	TraesCS4B01G233000	chr3A	522043374	522044029	655	True	1044.000000	1044	95.303000	1	660	1	chr3A.!!$R1	659
11	TraesCS4B01G233000	chr5A	664389049	664389706	657	False	1040.000000	1040	95.159000	1	661	1	chr5A.!!$F1	660

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
886	893	0.517755	CAAGCACAAGCAGAGCAGAG	59.482	55.0	1.96	0.0	45.49	3.35	F
1767	1776	0.974383	ACTCGGATCAAACCTCGGTT	59.026	50.0	0.00	0.0	40.45	4.44	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1824	1833	0.396435	ATCGTGTGTGCTCCTGGAAA	59.604	50.0	0.00	0.00	0.0	3.13	R
2623	2652	1.479709	AGACTCGAAGCATGCCTAGT	58.520	50.0	15.66	12.56	0.0	2.57	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
294	297	6.877855	AGTCTAGTTTCTTAATTCCCCGTTTC	59.122	38.462	0.00	0.00	0.00	2.78
298	301	7.625828	AGTTTCTTAATTCCCCGTTTCATAG	57.374	36.000	0.00	0.00	0.00	2.23
400	404	6.904463	TTCATATGCAATAGACATGGCAAT	57.096	33.333	0.00	0.00	44.38	3.56
448	453	9.645128	ATCAAAACATATCAACATGGGATCTAA	57.355	29.630	5.52	0.00	0.00	2.10
586	593	2.159170	TGGATGCGATGACGTGACAATA	60.159	45.455	0.00	0.00	41.98	1.90
661	668	4.510340	AGTTAGCGCGACCCTAATTTTATG	59.490	41.667	12.10	0.00	0.00	1.90
662	669	2.218603	AGCGCGACCCTAATTTTATGG	58.781	47.619	12.10	0.00	0.00	2.74
663	670	1.265905	GCGCGACCCTAATTTTATGGG	59.734	52.381	12.10	0.00	46.07	4.00
707	714	2.611473	CCGCCTCTGCATATCTCGAAAT	60.611	50.000	0.00	0.00	37.32	2.17
711	718	4.560311	GCCTCTGCATATCTCGAAATCTCA	60.560	45.833	0.00	0.00	37.47	3.27
836	843	4.617959	CGCTAGCTTTGCTATAAGTACCA	58.382	43.478	13.93	0.00	40.54	3.25
886	893	0.517755	CAAGCACAAGCAGAGCAGAG	59.482	55.000	1.96	0.00	45.49	3.35
975	982	7.439157	TGATTGATCTTGTTGGTTCTACTTG	57.561	36.000	0.00	0.00	0.00	3.16
976	983	7.223584	TGATTGATCTTGTTGGTTCTACTTGA	58.776	34.615	0.00	0.00	0.00	3.02
977	984	6.861065	TTGATCTTGTTGGTTCTACTTGAC	57.139	37.500	0.00	0.00	0.00	3.18
978	985	6.174720	TGATCTTGTTGGTTCTACTTGACT	57.825	37.500	0.00	0.00	0.00	3.41
979	986	7.297936	TGATCTTGTTGGTTCTACTTGACTA	57.702	36.000	0.00	0.00	0.00	2.59
980	987	7.152645	TGATCTTGTTGGTTCTACTTGACTAC	58.847	38.462	0.00	0.00	0.00	2.73
981	988	6.726490	TCTTGTTGGTTCTACTTGACTACT	57.274	37.500	0.00	0.00	0.00	2.57
982	989	7.120923	TCTTGTTGGTTCTACTTGACTACTT	57.879	36.000	0.00	0.00	0.00	2.24
983	990	6.984474	TCTTGTTGGTTCTACTTGACTACTTG	59.016	38.462	0.00	0.00	0.00	3.16
1018	1025	2.034048	GATGGCGTCTCCTTCTCCCC	62.034	65.000	0.00	0.00	36.40	4.81
1197	1204	4.845580	CGCATCCTCGCCAGCCTT	62.846	66.667	0.00	0.00	0.00	4.35
1203	1210	4.379243	CTCGCCAGCCTTGTCCGT	62.379	66.667	0.00	0.00	0.00	4.69
1242	1249	1.420378	TCGTCAACGTACGTACCGTA	58.580	50.000	23.12	10.77	43.31	4.02
1253	1260	1.337823	ACGTACCGTACTACACCGTCT	60.338	52.381	7.10	0.00	38.73	4.18
1256	1263	2.472695	ACCGTACTACACCGTCTACA	57.527	50.000	0.00	0.00	0.00	2.74
1268	1275	1.008875	CGTCTACAGTGCGTGCATGT	61.009	55.000	7.93	1.04	0.00	3.21
1272	1279	3.662153	CAGTGCGTGCATGTGCCA	61.662	61.111	7.93	0.00	41.18	4.92
1274	1281	3.663176	GTGCGTGCATGTGCCACT	61.663	61.111	7.93	0.00	41.18	4.00
1277	1284	4.409218	CGTGCATGTGCCACTGCC	62.409	66.667	14.00	7.04	41.18	4.85
1278	1285	4.060038	GTGCATGTGCCACTGCCC	62.060	66.667	14.00	2.46	41.18	5.36
1333	1340	4.214119	GCCGCTATATGATTTGAGCTGAAA	59.786	41.667	0.00	0.00	32.60	2.69
1745	1754	4.474651	ACTCCATTACTGATCCACCATCAA	59.525	41.667	0.00	0.00	41.25	2.57
1748	1757	5.665360	TCCATTACTGATCCACCATCAACTA	59.335	40.000	0.00	0.00	41.25	2.24
1767	1776	0.974383	ACTCGGATCAAACCTCGGTT	59.026	50.000	0.00	0.00	40.45	4.44
1824	1833	1.068748	ACACGTACGTCTCGCTTCATT	60.069	47.619	19.94	0.00	0.00	2.57
2032	2044	2.248487	GTTCGACAACAGCTACTACCG	58.752	52.381	0.00	0.00	32.14	4.02
2044	2056	0.901114	TACTACCGCAACCTCCTGCA	60.901	55.000	0.00	0.00	42.77	4.41
2090	2102	4.819761	GTGATGCTCTCCGCGCCA	62.820	66.667	0.00	0.00	43.27	5.69
2225	2237	2.983879	CGGAAGCATGGGGGAGGTT	61.984	63.158	0.00	0.00	0.00	3.50
2285	2297	1.917303	CGGTGCTGTTTGTTGTTCAAC	59.083	47.619	8.52	8.52	35.61	3.18
2305	2317	6.980593	TCAACGGAGTCATTCATTTGATTTT	58.019	32.000	0.00	0.00	45.00	1.82
2306	2318	7.432869	TCAACGGAGTCATTCATTTGATTTTT	58.567	30.769	0.00	0.00	45.00	1.94
2416	2429	5.882557	AGGCGTCTCAAATGTTCTGAATAAT	59.117	36.000	0.00	0.00	0.00	1.28
2480	2493	7.630242	AACTGTCTCACAAATTTTCTGAAGA	57.370	32.000	0.00	0.00	0.00	2.87
2559	2572	4.451900	ACTACCTGCCAGCAATATGTTAC	58.548	43.478	0.00	0.00	0.00	2.50
2623	2652	4.098960	CCTTACGTTGAGCTCATACCCTAA	59.901	45.833	19.04	12.94	0.00	2.69
2648	2677	2.219674	GGCATGCTTCGAGTCTAAATCG	59.780	50.000	18.92	0.00	41.50	3.34
2687	2716	6.253746	GCTGATAACATCTCAATTGTCACAC	58.746	40.000	5.13	0.00	0.00	3.82
2750	2863	7.736447	AAGAGCAGAAATTATACCATGCTAC	57.264	36.000	0.00	0.00	43.61	3.58
2823	2938	7.082700	GGAGCAAATGTTCCAAAAAGAAAAA	57.917	32.000	10.97	0.00	43.82	1.94
2898	3013	1.748493	GATTATTTGGCGGCTGGAACA	59.252	47.619	11.43	0.00	0.00	3.18
3201	3322	6.020440	GGTCATATTCGCATGTTCACATTTTG	60.020	38.462	0.00	0.00	33.61	2.44
3240	3361	1.535028	TGCCAATACAACAAGCTGACG	59.465	47.619	0.00	0.00	0.00	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
6	7	4.844085	TGGGGTCTAGTTTTGAAGATCTCA	59.156	41.667	0.00	0.00	0.00	3.27
327	331	7.784037	TGCCATGATATGTTTCAGCTATTTTT	58.216	30.769	0.00	0.00	0.00	1.94
567	573	3.490896	ACATATTGTCACGTCATCGCATC	59.509	43.478	0.00	0.00	41.18	3.91
586	593	7.254556	CGCATCACATGTCTCTAATGTAAACAT	60.255	37.037	0.00	0.00	36.10	2.71
618	625	3.820590	CACACGTGTGGCAGGAAA	58.179	55.556	35.65	0.00	42.10	3.13
661	668	4.337274	CGGGAAATGGTCTGTAATAAACCC	59.663	45.833	0.00	0.00	31.78	4.11
662	669	4.201980	GCGGGAAATGGTCTGTAATAAACC	60.202	45.833	0.00	0.00	0.00	3.27
663	670	4.201980	GGCGGGAAATGGTCTGTAATAAAC	60.202	45.833	0.00	0.00	0.00	2.01
664	671	3.949113	GGCGGGAAATGGTCTGTAATAAA	59.051	43.478	0.00	0.00	0.00	1.40
665	672	3.547746	GGCGGGAAATGGTCTGTAATAA	58.452	45.455	0.00	0.00	0.00	1.40
666	673	2.158726	GGGCGGGAAATGGTCTGTAATA	60.159	50.000	0.00	0.00	0.00	0.98
667	674	1.409661	GGGCGGGAAATGGTCTGTAAT	60.410	52.381	0.00	0.00	0.00	1.89
695	702	8.563732	TCTTGACTACTGAGATTTCGAGATATG	58.436	37.037	0.00	0.00	0.00	1.78
707	714	4.480115	TGAAAGGGTCTTGACTACTGAGA	58.520	43.478	0.61	0.00	0.00	3.27
711	718	3.714798	TGGTTGAAAGGGTCTTGACTACT	59.285	43.478	0.61	0.00	0.00	2.57
774	781	4.373116	TGGACTCGCTCCGGCAAC	62.373	66.667	0.00	0.00	43.03	4.17
775	782	4.373116	GTGGACTCGCTCCGGCAA	62.373	66.667	0.00	0.00	43.03	4.52
779	786	1.064946	GATGAGTGGACTCGCTCCG	59.935	63.158	2.43	0.00	46.84	4.63
854	861	4.498682	GCTTGTGCTTGTGATTCTTTGAGT	60.499	41.667	0.00	0.00	36.03	3.41
858	865	3.633525	TCTGCTTGTGCTTGTGATTCTTT	59.366	39.130	0.00	0.00	40.48	2.52
886	893	0.239347	CTAGCTTGTTGGTGTGCTGC	59.761	55.000	0.00	0.00	37.02	5.25
914	921	3.235292	TTTTGCTTGCTCGGTCGCG	62.235	57.895	0.00	0.00	0.00	5.87
915	922	1.441016	CTTTTGCTTGCTCGGTCGC	60.441	57.895	0.00	0.00	0.00	5.19
916	923	0.164647	CTCTTTTGCTTGCTCGGTCG	59.835	55.000	0.00	0.00	0.00	4.79
917	924	1.462670	CTCTCTTTTGCTTGCTCGGTC	59.537	52.381	0.00	0.00	0.00	4.79
929	936	8.961294	ATCAATTCGATCTTGATCTCTCTTTT	57.039	30.769	14.66	0.00	38.63	2.27
975	982	4.491676	TGATTTGCTACCGACAAGTAGTC	58.508	43.478	1.11	0.00	41.54	2.59
976	983	4.530710	TGATTTGCTACCGACAAGTAGT	57.469	40.909	1.11	0.00	41.54	2.73
977	984	5.168569	TCTTGATTTGCTACCGACAAGTAG	58.831	41.667	0.00	0.00	42.25	2.57
978	985	5.142061	TCTTGATTTGCTACCGACAAGTA	57.858	39.130	0.00	0.00	36.91	2.24
979	986	4.002906	TCTTGATTTGCTACCGACAAGT	57.997	40.909	0.00	0.00	36.91	3.16
980	987	4.201851	CCATCTTGATTTGCTACCGACAAG	60.202	45.833	0.00	0.00	36.91	3.16
981	988	3.689161	CCATCTTGATTTGCTACCGACAA	59.311	43.478	0.00	0.00	0.00	3.18
982	989	3.270027	CCATCTTGATTTGCTACCGACA	58.730	45.455	0.00	0.00	0.00	4.35
983	990	2.032178	GCCATCTTGATTTGCTACCGAC	59.968	50.000	0.00	0.00	0.00	4.79
1197	1204	1.802337	CGTGGAACTGGAGACGGACA	61.802	60.000	0.00	0.00	41.09	4.02
1203	1210	0.827925	AGCAGTCGTGGAACTGGAGA	60.828	55.000	6.21	0.00	45.52	3.71
1247	1254	2.049433	GCACGCACTGTAGACGGT	60.049	61.111	0.00	0.00	35.46	4.83
1248	1255	1.446099	ATGCACGCACTGTAGACGG	60.446	57.895	0.00	0.00	0.00	4.79
1250	1257	0.439985	CACATGCACGCACTGTAGAC	59.560	55.000	0.00	0.00	0.00	2.59
1253	1260	2.324330	GGCACATGCACGCACTGTA	61.324	57.895	6.15	0.00	44.36	2.74
1256	1263	3.663176	GTGGCACATGCACGCACT	61.663	61.111	13.86	0.00	44.52	4.40
1304	1311	4.735132	TCATATAGCGGCGGCGGC	62.735	66.667	33.02	24.75	46.35	6.53
1305	1312	1.019278	AAATCATATAGCGGCGGCGG	61.019	55.000	33.02	15.04	46.35	6.13
1306	1313	0.095245	CAAATCATATAGCGGCGGCG	59.905	55.000	28.70	28.70	46.35	6.46
1307	1314	1.394917	CTCAAATCATATAGCGGCGGC	59.605	52.381	9.78	8.43	40.37	6.53
1308	1315	1.394917	GCTCAAATCATATAGCGGCGG	59.605	52.381	9.78	0.00	0.00	6.13
1309	1316	2.093310	CAGCTCAAATCATATAGCGGCG	59.907	50.000	0.51	0.51	39.94	6.46
1310	1317	3.329386	TCAGCTCAAATCATATAGCGGC	58.671	45.455	0.00	0.00	39.94	6.53
1311	1318	5.468072	AGTTTCAGCTCAAATCATATAGCGG	59.532	40.000	0.00	0.00	39.94	5.52
1312	1319	6.536731	AGTTTCAGCTCAAATCATATAGCG	57.463	37.500	0.00	0.00	39.94	4.26
1313	1320	8.006590	CGTTAGTTTCAGCTCAAATCATATAGC	58.993	37.037	0.00	0.00	35.16	2.97
1314	1321	9.035607	ACGTTAGTTTCAGCTCAAATCATATAG	57.964	33.333	0.00	0.00	0.00	1.31
1333	1340	2.278989	ACGCACACGCACGTTAGT	60.279	55.556	0.00	0.00	45.53	2.24
1421	1430	3.408020	GCGCGCCGAGTTGTTGTA	61.408	61.111	23.24	0.00	0.00	2.41
1590	1599	2.030562	CGAAGTTGGCCGTCCTGT	59.969	61.111	0.00	0.00	0.00	4.00
1593	1602	3.110178	CGTCGAAGTTGGCCGTCC	61.110	66.667	0.00	0.00	0.00	4.79
1745	1754	1.749634	CCGAGGTTTGATCCGAGTAGT	59.250	52.381	0.00	0.00	0.00	2.73
1748	1757	0.974383	AACCGAGGTTTGATCCGAGT	59.026	50.000	0.93	0.00	34.22	4.18
1767	1776	7.576861	TCCAGTCGTGTCATAACATATAGAA	57.423	36.000	0.00	0.00	37.81	2.10
1824	1833	0.396435	ATCGTGTGTGCTCCTGGAAA	59.604	50.000	0.00	0.00	0.00	3.13
1975	1987	2.357517	CGAGGTTGTTGAGGCGCT	60.358	61.111	7.64	0.00	0.00	5.92
2032	2044	2.908073	CGGTTGTGCAGGAGGTTGC	61.908	63.158	0.00	0.00	44.33	4.17
2225	2237	0.909610	CCACCCTGCAGTTCCTCCTA	60.910	60.000	13.81	0.00	0.00	2.94
2389	2401	4.832248	TCAGAACATTTGAGACGCCTTAT	58.168	39.130	0.00	0.00	0.00	1.73
2393	2405	5.545658	TTATTCAGAACATTTGAGACGCC	57.454	39.130	0.00	0.00	0.00	5.68
2480	2493	1.272769	GAGCGGGTTTCACTGACTACT	59.727	52.381	0.00	0.00	0.00	2.57
2559	2572	7.496747	AGTTTCTCTTGCTTAGCTAGGATAAG	58.503	38.462	14.90	9.93	32.69	1.73
2623	2652	1.479709	AGACTCGAAGCATGCCTAGT	58.520	50.000	15.66	12.56	0.00	2.57
2648	2677	7.320443	TGTTATCAGCCATTAGAAACATGAC	57.680	36.000	0.00	0.00	0.00	3.06
2687	2716	7.763528	AGAGTTGTCATCTGTCAGCTAATTAAG	59.236	37.037	0.00	0.00	0.00	1.85
2823	2938	6.208599	TGTTTTTCTTCCGGAGATTTTAGCAT	59.791	34.615	3.34	0.00	33.49	3.79
2831	2946	4.662278	TGGAATGTTTTTCTTCCGGAGAT	58.338	39.130	3.34	0.00	43.22	2.75
3157	3278	2.629617	ACCTTGGCTGGATTTTGAGTTG	59.370	45.455	4.24	0.00	0.00	3.16

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.