Multiple sequence alignment - TraesCS4B01G232000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G232000 chr4B 100.000 5487 0 0 1 5487 483750427 483755913 0.000000e+00 10133.0
1 TraesCS4B01G232000 chr4B 86.099 1410 167 22 1859 3256 483760261 483761653 0.000000e+00 1491.0
2 TraesCS4B01G232000 chr4B 86.803 879 104 10 3618 4492 483762272 483763142 0.000000e+00 970.0
3 TraesCS4B01G232000 chr4A 92.716 4160 193 39 815 4876 75418441 75422588 0.000000e+00 5903.0
4 TraesCS4B01G232000 chr4A 86.275 867 110 8 3630 4492 75425568 75426429 0.000000e+00 933.0
5 TraesCS4B01G232000 chr4A 86.347 835 93 15 2481 3301 75424464 75425291 0.000000e+00 891.0
6 TraesCS4B01G232000 chr4A 95.043 464 19 3 5012 5475 580135926 580136385 0.000000e+00 726.0
7 TraesCS4B01G232000 chr4A 91.592 333 26 2 2104 2434 75424122 75424454 5.010000e-125 459.0
8 TraesCS4B01G232000 chr4A 100.000 36 0 0 783 818 75418457 75418422 3.550000e-07 67.6
9 TraesCS4B01G232000 chr4D 93.175 2872 101 29 815 3601 394135183 394138044 0.000000e+00 4130.0
10 TraesCS4B01G232000 chr4D 94.843 1435 49 5 3594 5008 394138228 394139657 0.000000e+00 2217.0
11 TraesCS4B01G232000 chr4D 85.479 1212 129 28 2104 3301 394142029 394143207 0.000000e+00 1219.0
12 TraesCS4B01G232000 chr4D 86.159 867 111 7 3630 4492 394143484 394144345 0.000000e+00 928.0
13 TraesCS4B01G232000 chr4D 82.759 203 28 3 1423 1624 394141417 394141613 2.030000e-39 174.0
14 TraesCS4B01G232000 chr4D 100.000 36 0 0 783 818 394135199 394135164 3.550000e-07 67.6
15 TraesCS4B01G232000 chr7A 98.837 774 7 2 11 784 9011879 9011108 0.000000e+00 1378.0
16 TraesCS4B01G232000 chr7A 86.897 145 11 5 4873 5015 206959859 206959997 7.360000e-34 156.0
17 TraesCS4B01G232000 chr7A 86.331 139 11 5 4873 5008 579808527 579808394 1.590000e-30 145.0
18 TraesCS4B01G232000 chr1A 96.863 797 4 5 6 784 23183167 23183960 0.000000e+00 1314.0
19 TraesCS4B01G232000 chr1A 95.269 465 18 4 5013 5475 579136161 579136623 0.000000e+00 734.0
20 TraesCS4B01G232000 chr1A 96.721 244 4 3 11 254 300941733 300941494 2.380000e-108 403.0
21 TraesCS4B01G232000 chr2A 96.954 788 5 3 15 784 578667853 578667067 0.000000e+00 1304.0
22 TraesCS4B01G232000 chr2B 95.680 787 10 10 15 784 765484734 765485513 0.000000e+00 1243.0
23 TraesCS4B01G232000 chr2B 94.823 792 19 4 10 784 493262701 493261915 0.000000e+00 1216.0
24 TraesCS4B01G232000 chr2B 99.444 540 3 0 245 784 9093379 9092840 0.000000e+00 981.0
25 TraesCS4B01G232000 chr5B 95.726 702 12 2 100 784 262052205 262051505 0.000000e+00 1114.0
26 TraesCS4B01G232000 chr5B 91.786 280 17 5 15 290 386563019 386562742 8.620000e-103 385.0
27 TraesCS4B01G232000 chr5B 86.667 135 9 6 4869 4999 208523456 208523327 2.060000e-29 141.0
28 TraesCS4B01G232000 chr5D 92.239 786 40 14 10 784 56056866 56056091 0.000000e+00 1094.0
29 TraesCS4B01G232000 chr6B 97.436 546 12 2 240 784 488848035 488847491 0.000000e+00 929.0
30 TraesCS4B01G232000 chr6B 94.684 602 15 1 200 784 512215749 512216350 0.000000e+00 918.0
31 TraesCS4B01G232000 chr6B 94.894 470 19 4 5010 5475 703037570 703038038 0.000000e+00 730.0
32 TraesCS4B01G232000 chr6B 94.894 470 19 4 5010 5475 703133755 703134223 0.000000e+00 730.0
33 TraesCS4B01G232000 chr7B 98.280 465 6 2 5012 5475 713053095 713052632 0.000000e+00 813.0
34 TraesCS4B01G232000 chr7B 94.861 467 21 3 5010 5475 614617286 614616822 0.000000e+00 726.0
35 TraesCS4B01G232000 chrUn 95.680 463 19 1 5013 5475 40794329 40794790 0.000000e+00 743.0
36 TraesCS4B01G232000 chr3B 95.075 467 19 3 5012 5475 52831382 52831847 0.000000e+00 732.0
37 TraesCS4B01G232000 chr6A 95.064 466 20 3 5012 5475 176994267 176994731 0.000000e+00 730.0
38 TraesCS4B01G232000 chr3A 90.385 312 10 11 19 313 691368771 691368463 5.150000e-105 392.0
39 TraesCS4B01G232000 chr3A 95.299 234 9 1 19 252 725055692 725055923 2.410000e-98 370.0
40 TraesCS4B01G232000 chr5A 88.571 140 7 5 4880 5016 556687528 556687395 1.580000e-35 161.0
41 TraesCS4B01G232000 chr7D 86.897 145 11 5 4873 5015 197927008 197927146 7.360000e-34 156.0
42 TraesCS4B01G232000 chr7D 87.218 133 10 4 4873 5003 42644592 42644719 1.590000e-30 145.0
43 TraesCS4B01G232000 chr2D 85.616 146 13 5 4873 5016 122864111 122864250 4.430000e-31 147.0
44 TraesCS4B01G232000 chr3D 84.247 146 14 6 4865 5008 67480961 67481099 3.450000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G232000 chr4B 483750427 483755913 5486 False 10133.0 10133 100.0000 1 5487 1 chr4B.!!$F1 5486
1 TraesCS4B01G232000 chr4B 483760261 483763142 2881 False 1230.5 1491 86.4510 1859 4492 2 chr4B.!!$F2 2633
2 TraesCS4B01G232000 chr4A 75418441 75426429 7988 False 2046.5 5903 89.2325 815 4876 4 chr4A.!!$F2 4061
3 TraesCS4B01G232000 chr4D 394135183 394144345 9162 False 1733.6 4130 88.4830 815 5008 5 chr4D.!!$F1 4193
4 TraesCS4B01G232000 chr7A 9011108 9011879 771 True 1378.0 1378 98.8370 11 784 1 chr7A.!!$R1 773
5 TraesCS4B01G232000 chr1A 23183167 23183960 793 False 1314.0 1314 96.8630 6 784 1 chr1A.!!$F1 778
6 TraesCS4B01G232000 chr2A 578667067 578667853 786 True 1304.0 1304 96.9540 15 784 1 chr2A.!!$R1 769
7 TraesCS4B01G232000 chr2B 765484734 765485513 779 False 1243.0 1243 95.6800 15 784 1 chr2B.!!$F1 769
8 TraesCS4B01G232000 chr2B 493261915 493262701 786 True 1216.0 1216 94.8230 10 784 1 chr2B.!!$R2 774
9 TraesCS4B01G232000 chr2B 9092840 9093379 539 True 981.0 981 99.4440 245 784 1 chr2B.!!$R1 539
10 TraesCS4B01G232000 chr5B 262051505 262052205 700 True 1114.0 1114 95.7260 100 784 1 chr5B.!!$R2 684
11 TraesCS4B01G232000 chr5D 56056091 56056866 775 True 1094.0 1094 92.2390 10 784 1 chr5D.!!$R1 774
12 TraesCS4B01G232000 chr6B 488847491 488848035 544 True 929.0 929 97.4360 240 784 1 chr6B.!!$R1 544
13 TraesCS4B01G232000 chr6B 512215749 512216350 601 False 918.0 918 94.6840 200 784 1 chr6B.!!$F1 584

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
806 831 0.179111 TACAGCTACAGCACGCCATC 60.179 55.000 3.70 0.00 45.16 3.51 F
1287 1362 0.105224 CCATCTCCTGAGCTCTGCTG 59.895 60.000 16.19 9.61 39.88 4.41 F
1328 1403 0.597637 CGACGCACACCACTTTCTCT 60.598 55.000 0.00 0.00 0.00 3.10 F
1856 1964 1.014352 CGTTATTGTACCAGCAGGCC 58.986 55.000 0.00 0.00 39.06 5.19 F
3580 3711 2.441750 AGGGCTGGACTGTCACTTTTTA 59.558 45.455 10.38 0.00 0.00 1.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1953 2067 1.068610 TCAAATTTCAAGAAGCCGGCG 60.069 47.619 23.20 6.32 0.00 6.46 R
2819 2938 1.819288 TGCTTTACTCTCTCTGTCGGG 59.181 52.381 0.00 0.00 0.00 5.14 R
2879 2998 2.300433 GTGCCTGATATGAATGCACCA 58.700 47.619 5.51 0.00 44.89 4.17 R
3817 4142 0.458543 AGTTCTGAGCATACACCGCG 60.459 55.000 0.00 0.00 0.00 6.46 R
5388 8237 0.104304 ACGGCGAGTGTTGAAAGAGT 59.896 50.000 16.62 0.00 0.00 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
654 679 1.895231 GGTCCCGTTTCGTTTGCCT 60.895 57.895 0.00 0.00 0.00 4.75
784 809 2.814913 GAAATCCTTGTCGGCCGGGT 62.815 60.000 27.83 0.60 0.00 5.28
785 810 1.555477 AAATCCTTGTCGGCCGGGTA 61.555 55.000 27.83 9.23 0.00 3.69
786 811 1.968050 AATCCTTGTCGGCCGGGTAG 61.968 60.000 27.83 18.61 0.00 3.18
787 812 3.387947 CCTTGTCGGCCGGGTAGT 61.388 66.667 27.83 0.00 0.00 2.73
788 813 2.053865 CCTTGTCGGCCGGGTAGTA 61.054 63.158 27.83 0.17 0.00 1.82
789 814 1.140375 CTTGTCGGCCGGGTAGTAC 59.860 63.158 27.83 15.70 0.00 2.73
790 815 1.597797 CTTGTCGGCCGGGTAGTACA 61.598 60.000 27.83 18.43 0.00 2.90
791 816 1.597797 TTGTCGGCCGGGTAGTACAG 61.598 60.000 27.83 0.00 0.00 2.74
792 817 3.142838 TCGGCCGGGTAGTACAGC 61.143 66.667 27.83 1.82 0.00 4.40
793 818 3.145551 CGGCCGGGTAGTACAGCT 61.146 66.667 20.10 0.00 0.00 4.24
794 819 1.825191 CGGCCGGGTAGTACAGCTA 60.825 63.158 20.10 0.00 0.00 3.32
802 827 4.891566 AGTACAGCTACAGCACGC 57.108 55.556 3.70 0.00 45.16 5.34
803 828 0.454600 TAGTACAGCTACAGCACGCC 59.545 55.000 3.70 0.00 45.16 5.68
804 829 1.080093 GTACAGCTACAGCACGCCA 60.080 57.895 3.70 0.00 45.16 5.69
805 830 0.460284 GTACAGCTACAGCACGCCAT 60.460 55.000 3.70 0.00 45.16 4.40
806 831 0.179111 TACAGCTACAGCACGCCATC 60.179 55.000 3.70 0.00 45.16 3.51
807 832 2.176273 CAGCTACAGCACGCCATCC 61.176 63.158 3.70 0.00 45.16 3.51
808 833 2.897350 GCTACAGCACGCCATCCC 60.897 66.667 0.00 0.00 41.59 3.85
809 834 2.203070 CTACAGCACGCCATCCCC 60.203 66.667 0.00 0.00 0.00 4.81
810 835 2.687200 TACAGCACGCCATCCCCT 60.687 61.111 0.00 0.00 0.00 4.79
811 836 2.257409 CTACAGCACGCCATCCCCTT 62.257 60.000 0.00 0.00 0.00 3.95
812 837 2.252072 TACAGCACGCCATCCCCTTC 62.252 60.000 0.00 0.00 0.00 3.46
813 838 4.115199 AGCACGCCATCCCCTTCC 62.115 66.667 0.00 0.00 0.00 3.46
1024 1061 1.340657 CGCAGCACAAGAGACGAGAC 61.341 60.000 0.00 0.00 0.00 3.36
1092 1135 7.149973 TCTTCTTTTCTGAAATTCCATTGCAG 58.850 34.615 3.31 0.00 45.57 4.41
1099 1142 4.401022 TGAAATTCCATTGCAGAGAGTGT 58.599 39.130 0.00 0.00 0.00 3.55
1103 1146 7.828717 TGAAATTCCATTGCAGAGAGTGTATAA 59.171 33.333 0.00 0.00 0.00 0.98
1155 1205 9.216117 TGTAGCCTGTAGAATTTAACTTTTCTC 57.784 33.333 0.00 0.00 34.22 2.87
1210 1277 6.101650 TGAGACAAGAGTGAGCTGATAAAA 57.898 37.500 0.00 0.00 0.00 1.52
1211 1278 6.705302 TGAGACAAGAGTGAGCTGATAAAAT 58.295 36.000 0.00 0.00 0.00 1.82
1213 1280 6.112058 AGACAAGAGTGAGCTGATAAAATCC 58.888 40.000 0.00 0.00 0.00 3.01
1215 1282 6.479884 ACAAGAGTGAGCTGATAAAATCCTT 58.520 36.000 0.00 0.00 0.00 3.36
1217 1284 5.355596 AGAGTGAGCTGATAAAATCCTTCG 58.644 41.667 0.00 0.00 0.00 3.79
1218 1285 5.091261 AGTGAGCTGATAAAATCCTTCGT 57.909 39.130 0.00 0.00 0.00 3.85
1246 1320 2.230660 GGTCCAAACTGAAACTGGAGG 58.769 52.381 0.00 0.00 39.91 4.30
1259 1334 2.123982 GGAGGCAGCAAGATGGGG 60.124 66.667 0.00 0.00 0.00 4.96
1262 1337 0.536915 GAGGCAGCAAGATGGGGATC 60.537 60.000 0.00 0.00 0.00 3.36
1269 1344 0.607489 CAAGATGGGGATCGGATGCC 60.607 60.000 19.26 19.26 40.52 4.40
1279 1354 0.975135 ATCGGATGCCATCTCCTGAG 59.025 55.000 4.41 0.00 0.00 3.35
1287 1362 0.105224 CCATCTCCTGAGCTCTGCTG 59.895 60.000 16.19 9.61 39.88 4.41
1309 1384 6.035327 GCTGCAGTGATATTGAAAATTTGACC 59.965 38.462 16.64 0.00 0.00 4.02
1318 1393 2.041244 GAAAATTTGACCGACGCACAC 58.959 47.619 0.00 0.00 0.00 3.82
1328 1403 0.597637 CGACGCACACCACTTTCTCT 60.598 55.000 0.00 0.00 0.00 3.10
1386 1462 4.823989 AGTTCAGGTTTCTCACAGGAATTG 59.176 41.667 0.00 0.00 0.00 2.32
1398 1474 6.934645 TCTCACAGGAATTGAGTACGAAATTT 59.065 34.615 9.33 0.00 41.22 1.82
1436 1517 4.042271 ACCCGTCCATGTTAGGAAAATT 57.958 40.909 0.00 0.00 39.92 1.82
1441 1522 5.650703 CCGTCCATGTTAGGAAAATTAAGGT 59.349 40.000 0.00 0.00 39.92 3.50
1453 1535 5.279256 GGAAAATTAAGGTTGCAGCTTGGTA 60.279 40.000 0.00 0.00 36.49 3.25
1472 1559 4.600111 TGGTACCCCTTTTTCAGTATGTCT 59.400 41.667 10.07 0.00 37.40 3.41
1473 1560 5.183969 GGTACCCCTTTTTCAGTATGTCTC 58.816 45.833 0.00 0.00 37.40 3.36
1490 1577 4.087182 TGTCTCTAGGTGGTTAAGACTGG 58.913 47.826 6.94 0.00 37.75 4.00
1491 1578 4.202641 TGTCTCTAGGTGGTTAAGACTGGA 60.203 45.833 6.94 0.00 37.75 3.86
1582 1669 2.594303 CTGTCCCGCAACAAGGCA 60.594 61.111 0.00 0.00 0.00 4.75
1725 1833 1.126488 TTGGGTGCCAAATTGCTTCA 58.874 45.000 0.00 0.00 40.92 3.02
1773 1881 2.611974 AAATCCGTGTTGAATGACGC 57.388 45.000 0.00 0.00 34.18 5.19
1838 1946 8.480643 ACTCCTTACTTTCTCATAACAAATCG 57.519 34.615 0.00 0.00 0.00 3.34
1856 1964 1.014352 CGTTATTGTACCAGCAGGCC 58.986 55.000 0.00 0.00 39.06 5.19
1873 1982 4.210331 CAGGCCATTTCCTTAGTAAGCAT 58.790 43.478 5.01 0.00 33.25 3.79
1953 2067 9.623350 GCTGCCTGTAAGTTAGTATAATAGTAC 57.377 37.037 0.00 0.00 0.00 2.73
2097 2214 7.370383 GGACCCTTGTGCATATTTTGTATATG 58.630 38.462 0.00 0.00 35.63 1.78
2409 2527 4.103311 ACTTTTGTCTACCTCCTTTGCTCT 59.897 41.667 0.00 0.00 0.00 4.09
2689 2808 5.450453 TCAACCACCTTCATGTTTAGGAAA 58.550 37.500 15.10 0.00 35.45 3.13
2819 2938 5.330295 GCTGATCAATTTGATGACAGTGAC 58.670 41.667 16.41 3.42 37.20 3.67
3128 3247 7.031226 TGCTCTTTTATATGAAGTTGATGGC 57.969 36.000 0.00 0.00 0.00 4.40
3198 3317 7.436673 CCGAACTTGAGTAATCATCTTCCTTAG 59.563 40.741 0.00 0.00 0.00 2.18
3224 3343 5.895216 GCATCATTGCCTTACTTTTATGC 57.105 39.130 0.00 0.00 43.38 3.14
3399 3519 3.538591 TGAGTAGAGCCAAGCAATCATG 58.461 45.455 0.00 0.00 0.00 3.07
3580 3711 2.441750 AGGGCTGGACTGTCACTTTTTA 59.558 45.455 10.38 0.00 0.00 1.52
3793 4118 4.098894 TCCTAGTAAGAATGTTCCCGGTT 58.901 43.478 0.00 0.00 0.00 4.44
3817 4142 5.779922 TGGGCGACTACTATCATATTCAAC 58.220 41.667 0.00 0.00 0.00 3.18
3826 4151 5.779922 ACTATCATATTCAACGCGGTGTAT 58.220 37.500 25.58 22.66 0.00 2.29
3868 4193 3.846588 TCTTAGAGCAGGGAATGGTTCTT 59.153 43.478 0.00 0.00 40.53 2.52
3905 4230 0.881118 TTTCAATGTTCCTCCTGCGC 59.119 50.000 0.00 0.00 0.00 6.09
4322 4647 8.594881 CTATTTAAGCTCGTTCATATTGACCT 57.405 34.615 0.00 0.00 0.00 3.85
4333 4658 4.751060 TCATATTGACCTTGGTGTCGTAC 58.249 43.478 0.00 0.00 38.11 3.67
4334 4659 4.221041 TCATATTGACCTTGGTGTCGTACA 59.779 41.667 0.00 0.00 38.11 2.90
4344 4669 4.587584 TGGTGTCGTACATTACAACTCA 57.412 40.909 8.86 1.05 34.33 3.41
4345 4670 4.552355 TGGTGTCGTACATTACAACTCAG 58.448 43.478 8.86 0.00 34.33 3.35
4348 4673 3.056393 TGTCGTACATTACAACTCAGGGG 60.056 47.826 0.00 0.00 0.00 4.79
4522 4847 5.902613 AAAATGTGTGATGGTCATACCTG 57.097 39.130 4.71 0.00 37.65 4.00
4531 4856 1.003118 TGGTCATACCTGCTGTGGAAC 59.997 52.381 0.00 0.00 39.58 3.62
4579 4904 2.439409 TCATGGGAGCAGTTCATTGTG 58.561 47.619 0.00 0.00 0.00 3.33
4701 5040 6.908825 TGTATGAAATTTGTAACACCAGAGC 58.091 36.000 0.00 0.00 0.00 4.09
4767 5106 5.538053 TGTTCAAAAGCATCCTGTTATTCCA 59.462 36.000 0.00 0.00 0.00 3.53
4771 5110 7.999679 TCAAAAGCATCCTGTTATTCCATAAG 58.000 34.615 0.00 0.00 0.00 1.73
4867 5215 3.858503 GCTCCAGAACCAAACATCAAAGC 60.859 47.826 0.00 0.00 0.00 3.51
4881 5229 6.613153 ACATCAAAGCTATATACTCCCTCC 57.387 41.667 0.00 0.00 0.00 4.30
4883 5231 4.737578 TCAAAGCTATATACTCCCTCCGT 58.262 43.478 0.00 0.00 0.00 4.69
4890 5238 4.939052 ATATACTCCCTCCGTTCACTTG 57.061 45.455 0.00 0.00 0.00 3.16
4893 5241 2.322658 ACTCCCTCCGTTCACTTGTAA 58.677 47.619 0.00 0.00 0.00 2.41
4894 5242 2.299297 ACTCCCTCCGTTCACTTGTAAG 59.701 50.000 0.00 0.00 0.00 2.34
4895 5243 2.561419 CTCCCTCCGTTCACTTGTAAGA 59.439 50.000 0.00 0.00 0.00 2.10
4897 5245 3.056107 TCCCTCCGTTCACTTGTAAGATG 60.056 47.826 0.00 0.00 0.00 2.90
4898 5246 3.306780 CCCTCCGTTCACTTGTAAGATGT 60.307 47.826 0.00 0.00 0.00 3.06
4903 5255 6.721321 TCCGTTCACTTGTAAGATGTTTTTC 58.279 36.000 0.00 0.00 0.00 2.29
4946 5298 6.042777 ACATACATACGGACTGAAATGAGTG 58.957 40.000 7.93 7.97 0.00 3.51
4952 5304 3.809832 ACGGACTGAAATGAGTGAACAAG 59.190 43.478 0.00 0.00 0.00 3.16
4976 5328 7.207383 AGCACACTAAAATGCGTCTATATACA 58.793 34.615 0.00 0.00 46.74 2.29
4986 5338 6.262193 TGCGTCTATATACATCCGATTCAA 57.738 37.500 0.00 0.00 0.00 2.69
4990 5342 7.950496 GCGTCTATATACATCCGATTCAAAAAC 59.050 37.037 0.00 0.00 0.00 2.43
4991 5343 8.974408 CGTCTATATACATCCGATTCAAAAACA 58.026 33.333 0.00 0.00 0.00 2.83
5021 5373 4.632153 ACATCTTATTATCAGTGGCGGAC 58.368 43.478 0.00 0.00 0.00 4.79
5022 5374 3.746045 TCTTATTATCAGTGGCGGACC 57.254 47.619 0.00 0.00 0.00 4.46
5023 5375 2.367567 TCTTATTATCAGTGGCGGACCC 59.632 50.000 0.00 0.00 33.59 4.46
5026 5378 1.622607 TTATCAGTGGCGGACCCAGG 61.623 60.000 0.00 0.00 46.54 4.45
5027 5379 2.523740 TATCAGTGGCGGACCCAGGA 62.524 60.000 0.00 0.00 46.54 3.86
5028 5380 3.636231 CAGTGGCGGACCCAGGAA 61.636 66.667 0.00 0.00 46.54 3.36
5029 5381 2.852075 AGTGGCGGACCCAGGAAA 60.852 61.111 0.00 0.00 46.54 3.13
5031 5383 1.529713 GTGGCGGACCCAGGAAAAA 60.530 57.895 0.00 0.00 46.54 1.94
5049 5401 2.888834 AAAATGAAGGGTGTGCACAC 57.111 45.000 36.56 36.56 45.72 3.82
5078 5430 5.982890 AAAATTCCCACCTACTCAATGTG 57.017 39.130 0.00 0.00 0.00 3.21
5079 5431 4.657814 AATTCCCACCTACTCAATGTGT 57.342 40.909 0.00 0.00 0.00 3.72
5081 5433 2.615391 TCCCACCTACTCAATGTGTCA 58.385 47.619 0.00 0.00 0.00 3.58
5082 5434 2.567169 TCCCACCTACTCAATGTGTCAG 59.433 50.000 0.00 0.00 0.00 3.51
5084 5436 3.589988 CCACCTACTCAATGTGTCAGAC 58.410 50.000 0.00 0.00 0.00 3.51
5090 5442 7.387673 CACCTACTCAATGTGTCAGACAAAATA 59.612 37.037 4.32 0.00 38.36 1.40
5092 5444 8.393366 CCTACTCAATGTGTCAGACAAAATATG 58.607 37.037 4.32 1.73 38.36 1.78
5093 5445 7.149569 ACTCAATGTGTCAGACAAAATATGG 57.850 36.000 4.32 0.00 38.36 2.74
5094 5446 5.953183 TCAATGTGTCAGACAAAATATGGC 58.047 37.500 4.32 0.00 38.36 4.40
5095 5447 5.476254 TCAATGTGTCAGACAAAATATGGCA 59.524 36.000 4.32 0.00 40.75 4.92
5097 5449 5.781210 TGTGTCAGACAAAATATGGCAAA 57.219 34.783 4.32 0.00 40.75 3.68
5098 5450 6.154203 TGTGTCAGACAAAATATGGCAAAA 57.846 33.333 4.32 0.00 40.75 2.44
5099 5451 6.757237 TGTGTCAGACAAAATATGGCAAAAT 58.243 32.000 4.32 0.00 40.75 1.82
5100 5452 7.890515 TGTGTCAGACAAAATATGGCAAAATA 58.109 30.769 4.32 0.00 40.75 1.40
5101 5453 8.363390 TGTGTCAGACAAAATATGGCAAAATAA 58.637 29.630 4.32 0.00 40.75 1.40
5102 5454 9.369904 GTGTCAGACAAAATATGGCAAAATAAT 57.630 29.630 4.32 0.00 40.75 1.28
5128 5480 8.969260 ACATGAGTATCTTAATGCAAATCTCA 57.031 30.769 0.00 0.00 34.92 3.27
5131 5483 8.791327 TGAGTATCTTAATGCAAATCTCACAA 57.209 30.769 0.00 0.00 34.92 3.33
5132 5484 8.668353 TGAGTATCTTAATGCAAATCTCACAAC 58.332 33.333 0.00 0.00 34.92 3.32
5133 5485 8.565896 AGTATCTTAATGCAAATCTCACAACA 57.434 30.769 0.00 0.00 0.00 3.33
5135 5487 9.793252 GTATCTTAATGCAAATCTCACAACAAT 57.207 29.630 0.00 0.00 0.00 2.71
5137 5489 9.715121 ATCTTAATGCAAATCTCACAACAATTT 57.285 25.926 0.00 0.00 0.00 1.82
5141 5493 8.524870 AATGCAAATCTCACAACAATTTAGTC 57.475 30.769 0.00 0.00 0.00 2.59
5142 5494 6.446318 TGCAAATCTCACAACAATTTAGTCC 58.554 36.000 0.00 0.00 0.00 3.85
5164 6698 8.408601 AGTCCACAAAATATATCTCAAATGTGC 58.591 33.333 0.00 0.00 36.49 4.57
5165 6699 8.408601 GTCCACAAAATATATCTCAAATGTGCT 58.591 33.333 0.00 0.00 36.49 4.40
5166 6700 8.623903 TCCACAAAATATATCTCAAATGTGCTC 58.376 33.333 0.00 0.00 36.49 4.26
5178 6712 8.334263 TCTCAAATGTGCTCAATTACAATACA 57.666 30.769 0.00 0.00 0.00 2.29
5180 6714 8.969121 TCAAATGTGCTCAATTACAATACAAG 57.031 30.769 0.00 0.00 0.00 3.16
5182 6716 9.838975 CAAATGTGCTCAATTACAATACAAGTA 57.161 29.630 0.00 0.00 0.00 2.24
5210 7180 9.772973 TCTTACATTAAAGAAGCACAAGTAGAA 57.227 29.630 0.00 0.00 32.59 2.10
5222 7192 7.986085 AGCACAAGTAGAAAATTACATCACT 57.014 32.000 0.00 0.00 0.00 3.41
5223 7193 9.502091 AAGCACAAGTAGAAAATTACATCACTA 57.498 29.630 0.00 0.00 0.00 2.74
5224 7194 9.155975 AGCACAAGTAGAAAATTACATCACTAG 57.844 33.333 0.00 0.00 0.00 2.57
5225 7195 8.391106 GCACAAGTAGAAAATTACATCACTAGG 58.609 37.037 0.00 0.00 0.00 3.02
5226 7196 9.436957 CACAAGTAGAAAATTACATCACTAGGT 57.563 33.333 0.00 0.00 0.00 3.08
5247 7217 4.615541 GGTAACTCTACGTTTTTGCATTGC 59.384 41.667 0.46 0.46 37.05 3.56
5248 7218 3.282831 ACTCTACGTTTTTGCATTGCC 57.717 42.857 6.12 0.00 0.00 4.52
5250 7220 3.255642 ACTCTACGTTTTTGCATTGCCAT 59.744 39.130 6.12 0.00 0.00 4.40
5251 7221 3.573598 TCTACGTTTTTGCATTGCCATG 58.426 40.909 6.12 0.00 0.00 3.66
5252 7222 2.522836 ACGTTTTTGCATTGCCATGA 57.477 40.000 6.12 0.00 31.07 3.07
5253 7223 2.831333 ACGTTTTTGCATTGCCATGAA 58.169 38.095 6.12 0.00 31.07 2.57
5254 7224 3.201290 ACGTTTTTGCATTGCCATGAAA 58.799 36.364 6.12 0.00 31.07 2.69
5255 7225 3.248125 ACGTTTTTGCATTGCCATGAAAG 59.752 39.130 6.12 1.63 28.79 2.62
5256 7226 3.557508 GTTTTTGCATTGCCATGAAAGC 58.442 40.909 6.12 1.42 28.79 3.51
5258 7228 2.772077 TTGCATTGCCATGAAAGCAT 57.228 40.000 6.12 0.00 40.59 3.79
5259 7229 2.303163 TGCATTGCCATGAAAGCATC 57.697 45.000 6.12 0.00 40.59 3.91
5260 7230 1.550976 TGCATTGCCATGAAAGCATCA 59.449 42.857 6.12 0.00 43.67 3.07
5261 7231 2.028020 TGCATTGCCATGAAAGCATCAA 60.028 40.909 6.12 0.00 42.54 2.57
5263 7233 3.857052 CATTGCCATGAAAGCATCAACT 58.143 40.909 0.00 0.00 42.54 3.16
5264 7234 4.678574 GCATTGCCATGAAAGCATCAACTA 60.679 41.667 1.13 0.00 42.54 2.24
5265 7235 5.597806 CATTGCCATGAAAGCATCAACTAT 58.402 37.500 0.00 0.00 42.54 2.12
5266 7236 4.642445 TGCCATGAAAGCATCAACTATG 57.358 40.909 0.00 0.00 42.54 2.23
5267 7237 4.018490 TGCCATGAAAGCATCAACTATGT 58.982 39.130 0.00 0.00 42.54 2.29
5268 7238 4.096833 TGCCATGAAAGCATCAACTATGTC 59.903 41.667 0.00 0.00 42.54 3.06
5269 7239 4.096833 GCCATGAAAGCATCAACTATGTCA 59.903 41.667 0.00 0.00 42.54 3.58
5271 7241 6.436261 CCATGAAAGCATCAACTATGTCATC 58.564 40.000 0.00 0.00 42.54 2.92
5272 7242 6.262496 CCATGAAAGCATCAACTATGTCATCT 59.738 38.462 0.00 0.00 42.54 2.90
5273 7243 7.201794 CCATGAAAGCATCAACTATGTCATCTT 60.202 37.037 0.00 0.00 42.54 2.40
5277 7247 3.806521 GCATCAACTATGTCATCTTCGCT 59.193 43.478 0.00 0.00 37.93 4.93
5278 7248 4.272018 GCATCAACTATGTCATCTTCGCTT 59.728 41.667 0.00 0.00 37.93 4.68
5279 7249 5.463392 GCATCAACTATGTCATCTTCGCTTA 59.537 40.000 0.00 0.00 37.93 3.09
5280 7250 6.563010 GCATCAACTATGTCATCTTCGCTTAC 60.563 42.308 0.00 0.00 37.93 2.34
5281 7251 6.208988 TCAACTATGTCATCTTCGCTTACT 57.791 37.500 0.00 0.00 0.00 2.24
5282 7252 6.631016 TCAACTATGTCATCTTCGCTTACTT 58.369 36.000 0.00 0.00 0.00 2.24
5283 7253 6.752351 TCAACTATGTCATCTTCGCTTACTTC 59.248 38.462 0.00 0.00 0.00 3.01
5286 7256 4.471904 TGTCATCTTCGCTTACTTCCAT 57.528 40.909 0.00 0.00 0.00 3.41
5287 7257 4.183865 TGTCATCTTCGCTTACTTCCATG 58.816 43.478 0.00 0.00 0.00 3.66
5288 7258 4.081697 TGTCATCTTCGCTTACTTCCATGA 60.082 41.667 0.00 0.00 0.00 3.07
5289 7259 4.870426 GTCATCTTCGCTTACTTCCATGAA 59.130 41.667 0.00 0.00 0.00 2.57
5291 7261 4.265904 TCTTCGCTTACTTCCATGAACA 57.734 40.909 0.00 0.00 0.00 3.18
5292 7262 3.994392 TCTTCGCTTACTTCCATGAACAC 59.006 43.478 0.00 0.00 0.00 3.32
5293 7263 3.394674 TCGCTTACTTCCATGAACACA 57.605 42.857 0.00 0.00 0.00 3.72
5294 7264 3.937814 TCGCTTACTTCCATGAACACAT 58.062 40.909 0.00 0.00 0.00 3.21
5295 7265 3.932710 TCGCTTACTTCCATGAACACATC 59.067 43.478 0.00 0.00 0.00 3.06
5296 7266 3.063997 CGCTTACTTCCATGAACACATCC 59.936 47.826 0.00 0.00 0.00 3.51
5297 7267 3.378427 GCTTACTTCCATGAACACATCCC 59.622 47.826 0.00 0.00 0.00 3.85
5299 7269 1.351017 ACTTCCATGAACACATCCCGT 59.649 47.619 0.00 0.00 0.00 5.28
5301 7271 2.577606 TCCATGAACACATCCCGTTT 57.422 45.000 0.00 0.00 0.00 3.60
5302 7272 3.704800 TCCATGAACACATCCCGTTTA 57.295 42.857 0.00 0.00 0.00 2.01
5303 7273 4.022413 TCCATGAACACATCCCGTTTAA 57.978 40.909 0.00 0.00 0.00 1.52
5310 7853 7.455641 TGAACACATCCCGTTTAATAAATGT 57.544 32.000 4.49 0.00 0.00 2.71
5311 7854 7.531716 TGAACACATCCCGTTTAATAAATGTC 58.468 34.615 4.49 0.00 0.00 3.06
5317 7860 6.503589 TCCCGTTTAATAAATGTCACCAAG 57.496 37.500 4.49 0.00 0.00 3.61
5322 7865 7.009174 CCGTTTAATAAATGTCACCAAGCAATC 59.991 37.037 4.49 0.00 0.00 2.67
5323 7866 7.540400 CGTTTAATAAATGTCACCAAGCAATCA 59.460 33.333 0.00 0.00 0.00 2.57
5325 7868 9.941325 TTTAATAAATGTCACCAAGCAATCATT 57.059 25.926 0.00 0.00 0.00 2.57
5326 7869 9.585099 TTAATAAATGTCACCAAGCAATCATTC 57.415 29.630 0.00 0.00 0.00 2.67
5327 7870 5.471556 AAATGTCACCAAGCAATCATTCA 57.528 34.783 0.00 0.00 0.00 2.57
5328 7871 5.471556 AATGTCACCAAGCAATCATTCAA 57.528 34.783 0.00 0.00 0.00 2.69
5329 7872 4.508461 TGTCACCAAGCAATCATTCAAG 57.492 40.909 0.00 0.00 0.00 3.02
5330 7873 3.248266 GTCACCAAGCAATCATTCAAGC 58.752 45.455 0.00 0.00 0.00 4.01
5331 7874 2.095110 TCACCAAGCAATCATTCAAGCG 60.095 45.455 0.00 0.00 0.00 4.68
5332 7875 2.095110 CACCAAGCAATCATTCAAGCGA 60.095 45.455 0.00 0.00 0.00 4.93
5334 7877 3.181493 ACCAAGCAATCATTCAAGCGATC 60.181 43.478 0.00 0.00 0.00 3.69
5336 7879 4.499188 CCAAGCAATCATTCAAGCGATCAT 60.499 41.667 0.00 0.00 0.00 2.45
5337 7880 4.485024 AGCAATCATTCAAGCGATCATC 57.515 40.909 0.00 0.00 0.00 2.92
5341 7884 5.441543 CAATCATTCAAGCGATCATCACTC 58.558 41.667 0.00 0.00 0.00 3.51
5342 7885 4.127566 TCATTCAAGCGATCATCACTCA 57.872 40.909 0.00 0.00 0.00 3.41
5344 7887 5.846203 TCATTCAAGCGATCATCACTCATA 58.154 37.500 0.00 0.00 0.00 2.15
5345 7888 5.924825 TCATTCAAGCGATCATCACTCATAG 59.075 40.000 0.00 0.00 0.00 2.23
5347 7890 6.391227 TTCAAGCGATCATCACTCATAGTA 57.609 37.500 0.00 0.00 0.00 1.82
5348 7891 6.006759 TCAAGCGATCATCACTCATAGTAG 57.993 41.667 0.00 0.00 0.00 2.57
5350 7893 5.621197 AGCGATCATCACTCATAGTAGTC 57.379 43.478 0.00 0.00 0.00 2.59
5352 7895 5.767665 AGCGATCATCACTCATAGTAGTCTT 59.232 40.000 0.00 0.00 0.00 3.01
5353 7896 6.072728 AGCGATCATCACTCATAGTAGTCTTC 60.073 42.308 0.00 0.00 0.00 2.87
5354 7897 6.293680 GCGATCATCACTCATAGTAGTCTTCA 60.294 42.308 0.00 0.00 0.00 3.02
5356 7899 7.589587 CGATCATCACTCATAGTAGTCTTCAAC 59.410 40.741 0.00 0.00 0.00 3.18
5357 7900 7.946381 TCATCACTCATAGTAGTCTTCAACT 57.054 36.000 0.00 0.00 42.33 3.16
5358 7901 8.354711 TCATCACTCATAGTAGTCTTCAACTT 57.645 34.615 0.00 0.00 39.55 2.66
5387 8236 8.801715 TTTCACTAGATTCATTGCTGAAAAAC 57.198 30.769 0.00 0.00 44.29 2.43
5388 8237 7.509141 TCACTAGATTCATTGCTGAAAAACA 57.491 32.000 0.00 0.00 44.29 2.83
5393 8242 7.047460 AGATTCATTGCTGAAAAACACTCTT 57.953 32.000 0.00 0.00 44.29 2.85
5396 8245 6.206395 TCATTGCTGAAAAACACTCTTTCA 57.794 33.333 0.00 0.00 39.79 2.69
5397 8246 6.629128 TCATTGCTGAAAAACACTCTTTCAA 58.371 32.000 0.26 0.00 41.10 2.69
5398 8247 6.531240 TCATTGCTGAAAAACACTCTTTCAAC 59.469 34.615 0.26 0.00 41.10 3.18
5399 8248 5.384063 TGCTGAAAAACACTCTTTCAACA 57.616 34.783 0.26 0.00 41.10 3.33
5400 8249 5.160641 TGCTGAAAAACACTCTTTCAACAC 58.839 37.500 0.26 0.00 41.10 3.32
5401 8250 5.048083 TGCTGAAAAACACTCTTTCAACACT 60.048 36.000 0.26 0.00 41.10 3.55
5402 8251 5.513141 GCTGAAAAACACTCTTTCAACACTC 59.487 40.000 0.26 0.00 41.10 3.51
5403 8252 5.627172 TGAAAAACACTCTTTCAACACTCG 58.373 37.500 0.00 0.00 39.28 4.18
5404 8253 3.675467 AAACACTCTTTCAACACTCGC 57.325 42.857 0.00 0.00 0.00 5.03
5405 8254 1.583054 ACACTCTTTCAACACTCGCC 58.417 50.000 0.00 0.00 0.00 5.54
5406 8255 0.508641 CACTCTTTCAACACTCGCCG 59.491 55.000 0.00 0.00 0.00 6.46
5407 8256 0.104304 ACTCTTTCAACACTCGCCGT 59.896 50.000 0.00 0.00 0.00 5.68
5408 8257 0.784778 CTCTTTCAACACTCGCCGTC 59.215 55.000 0.00 0.00 0.00 4.79
5414 8263 3.802418 AACACTCGCCGTCACCACC 62.802 63.158 0.00 0.00 0.00 4.61
5423 8272 1.081094 CCGTCACCACCGGTAAAATC 58.919 55.000 6.87 0.00 40.59 2.17
5424 8273 1.608542 CCGTCACCACCGGTAAAATCA 60.609 52.381 6.87 0.00 40.59 2.57
5425 8274 2.144730 CGTCACCACCGGTAAAATCAA 58.855 47.619 6.87 0.00 32.11 2.57
5426 8275 2.745281 CGTCACCACCGGTAAAATCAAT 59.255 45.455 6.87 0.00 32.11 2.57
5453 8652 9.739276 ATCAATTTGATGAGTAAGTAGACCAAA 57.261 29.630 11.06 0.00 35.43 3.28
5454 8653 9.739276 TCAATTTGATGAGTAAGTAGACCAAAT 57.261 29.630 0.00 0.00 35.34 2.32
5455 8654 9.994432 CAATTTGATGAGTAAGTAGACCAAATC 57.006 33.333 0.00 0.00 33.50 2.17
5457 8656 9.911788 ATTTGATGAGTAAGTAGACCAAATCAT 57.088 29.630 0.00 0.00 30.09 2.45
5468 8667 7.989826 AGTAGACCAAATCATAAAGAACATGC 58.010 34.615 0.00 0.00 0.00 4.06
5469 8668 7.831193 AGTAGACCAAATCATAAAGAACATGCT 59.169 33.333 0.00 0.00 0.00 3.79
5471 8670 7.542025 AGACCAAATCATAAAGAACATGCTTC 58.458 34.615 0.00 0.00 0.00 3.86
5472 8671 7.395489 AGACCAAATCATAAAGAACATGCTTCT 59.605 33.333 0.00 0.00 0.00 2.85
5473 8672 7.899973 ACCAAATCATAAAGAACATGCTTCTT 58.100 30.769 13.96 13.96 40.20 2.52
5482 8681 7.681939 AAAGAACATGCTTCTTTAATACCGA 57.318 32.000 23.09 0.00 44.29 4.69
5483 8682 6.663944 AGAACATGCTTCTTTAATACCGAC 57.336 37.500 0.00 0.00 0.00 4.79
5485 8684 4.501071 ACATGCTTCTTTAATACCGACGT 58.499 39.130 0.00 0.00 0.00 4.34
5486 8685 4.328983 ACATGCTTCTTTAATACCGACGTG 59.671 41.667 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.621377 GAGGGGGCAGGACTCTCTA 59.379 63.158 0.00 0.00 0.00 2.43
3 4 2.366570 GAGGGGGCAGGACTCTCT 59.633 66.667 0.00 0.00 0.00 3.10
4 5 2.766229 GGAGGGGGCAGGACTCTC 60.766 72.222 0.00 0.00 0.00 3.20
5 6 3.288381 AGGAGGGGGCAGGACTCT 61.288 66.667 0.00 0.00 0.00 3.24
6 7 2.766229 GAGGAGGGGGCAGGACTC 60.766 72.222 0.00 0.00 0.00 3.36
7 8 4.423209 GGAGGAGGGGGCAGGACT 62.423 72.222 0.00 0.00 0.00 3.85
654 679 2.225791 CTCCATCGCCGTCTCACCAA 62.226 60.000 0.00 0.00 0.00 3.67
784 809 0.454600 GGCGTGCTGTAGCTGTACTA 59.545 55.000 5.38 0.00 42.66 1.82
785 810 1.215647 GGCGTGCTGTAGCTGTACT 59.784 57.895 5.38 0.00 42.66 2.73
786 811 0.460284 ATGGCGTGCTGTAGCTGTAC 60.460 55.000 5.38 0.00 42.66 2.90
787 812 0.179111 GATGGCGTGCTGTAGCTGTA 60.179 55.000 5.38 0.00 42.66 2.74
788 813 1.448540 GATGGCGTGCTGTAGCTGT 60.449 57.895 5.38 0.00 42.66 4.40
789 814 2.176273 GGATGGCGTGCTGTAGCTG 61.176 63.158 5.38 0.00 42.66 4.24
790 815 2.187946 GGATGGCGTGCTGTAGCT 59.812 61.111 5.38 0.00 42.66 3.32
791 816 2.897350 GGGATGGCGTGCTGTAGC 60.897 66.667 0.00 0.00 42.50 3.58
792 817 2.203070 GGGGATGGCGTGCTGTAG 60.203 66.667 0.00 0.00 0.00 2.74
793 818 2.252072 GAAGGGGATGGCGTGCTGTA 62.252 60.000 0.00 0.00 0.00 2.74
794 819 3.628646 GAAGGGGATGGCGTGCTGT 62.629 63.158 0.00 0.00 0.00 4.40
795 820 2.825836 GAAGGGGATGGCGTGCTG 60.826 66.667 0.00 0.00 0.00 4.41
796 821 4.115199 GGAAGGGGATGGCGTGCT 62.115 66.667 0.00 0.00 0.00 4.40
801 826 2.666596 CTACAGCGGAAGGGGATGGC 62.667 65.000 0.00 0.00 0.00 4.40
802 827 1.447643 CTACAGCGGAAGGGGATGG 59.552 63.158 0.00 0.00 0.00 3.51
803 828 1.227674 GCTACAGCGGAAGGGGATG 60.228 63.158 0.00 0.00 0.00 3.51
804 829 3.231298 GCTACAGCGGAAGGGGAT 58.769 61.111 0.00 0.00 0.00 3.85
1024 1061 0.464013 CCATCCTCTTGGAGCAGCAG 60.464 60.000 0.00 0.00 46.91 4.24
1092 1135 8.240267 ACCTAGGATGAACTTTATACACTCTC 57.760 38.462 17.98 0.00 0.00 3.20
1094 1137 9.134055 ACTACCTAGGATGAACTTTATACACTC 57.866 37.037 17.98 0.00 0.00 3.51
1096 1139 9.530633 CAACTACCTAGGATGAACTTTATACAC 57.469 37.037 17.98 0.00 0.00 2.90
1103 1146 5.128991 GCCTACAACTACCTAGGATGAACTT 59.871 44.000 17.98 0.00 32.46 2.66
1155 1205 1.893801 GGGGACGACCAGATACATAGG 59.106 57.143 6.20 0.00 42.91 2.57
1184 1242 3.160269 TCAGCTCACTCTTGTCTCATGA 58.840 45.455 0.00 0.00 0.00 3.07
1186 1244 5.929058 TTATCAGCTCACTCTTGTCTCAT 57.071 39.130 0.00 0.00 0.00 2.90
1210 1277 1.196012 GACCCAAGAGGACGAAGGAT 58.804 55.000 0.00 0.00 39.89 3.24
1211 1278 0.903454 GGACCCAAGAGGACGAAGGA 60.903 60.000 0.00 0.00 39.89 3.36
1213 1280 0.685097 TTGGACCCAAGAGGACGAAG 59.315 55.000 0.00 0.00 39.89 3.79
1215 1282 0.395312 GTTTGGACCCAAGAGGACGA 59.605 55.000 1.42 0.00 39.89 4.20
1217 1284 1.420138 TCAGTTTGGACCCAAGAGGAC 59.580 52.381 1.42 0.00 39.89 3.85
1218 1285 1.814429 TCAGTTTGGACCCAAGAGGA 58.186 50.000 1.42 0.00 39.89 3.71
1246 1320 1.895707 CCGATCCCCATCTTGCTGC 60.896 63.158 0.00 0.00 0.00 5.25
1259 1334 0.972134 TCAGGAGATGGCATCCGATC 59.028 55.000 23.33 14.36 42.02 3.69
1262 1337 1.301558 GCTCAGGAGATGGCATCCG 60.302 63.158 23.33 10.22 42.02 4.18
1269 1344 0.531090 GCAGCAGAGCTCAGGAGATG 60.531 60.000 17.77 12.31 36.40 2.90
1279 1354 2.558378 TCAATATCACTGCAGCAGAGC 58.442 47.619 29.70 0.00 35.18 4.09
1287 1362 6.251376 GTCGGTCAAATTTTCAATATCACTGC 59.749 38.462 0.00 0.00 0.00 4.40
1309 1384 0.597637 AGAGAAAGTGGTGTGCGTCG 60.598 55.000 0.00 0.00 0.00 5.12
1318 1393 9.988815 ATTACTACTATGCATTAGAGAAAGTGG 57.011 33.333 3.54 4.88 0.00 4.00
1352 1427 5.404395 AGAAACCTGAACTCCTACTAAGGT 58.596 41.667 0.00 0.00 44.09 3.50
1360 1435 2.370189 CCTGTGAGAAACCTGAACTCCT 59.630 50.000 0.00 0.00 0.00 3.69
1367 1442 4.392940 ACTCAATTCCTGTGAGAAACCTG 58.607 43.478 8.36 0.00 44.44 4.00
1369 1444 4.389077 CGTACTCAATTCCTGTGAGAAACC 59.611 45.833 8.36 0.00 44.44 3.27
1398 1474 6.011362 TGGACGGGTAGAAGGGATTATATAGA 60.011 42.308 0.00 0.00 0.00 1.98
1416 1497 5.067283 CCTTAATTTTCCTAACATGGACGGG 59.933 44.000 0.00 0.00 35.58 5.28
1417 1498 5.650703 ACCTTAATTTTCCTAACATGGACGG 59.349 40.000 0.00 0.00 35.58 4.79
1418 1499 6.753107 ACCTTAATTTTCCTAACATGGACG 57.247 37.500 0.00 0.00 35.58 4.79
1436 1517 2.194201 GGTACCAAGCTGCAACCTTA 57.806 50.000 7.15 0.00 0.00 2.69
1453 1535 5.189934 CCTAGAGACATACTGAAAAAGGGGT 59.810 44.000 0.00 0.00 0.00 4.95
1472 1559 4.956700 CAGATCCAGTCTTAACCACCTAGA 59.043 45.833 0.00 0.00 34.00 2.43
1473 1560 4.956700 TCAGATCCAGTCTTAACCACCTAG 59.043 45.833 0.00 0.00 34.00 3.02
1490 1577 7.727331 ATTAAGAAATAGCAGCACTCAGATC 57.273 36.000 0.00 0.00 0.00 2.75
1491 1578 9.270640 CTAATTAAGAAATAGCAGCACTCAGAT 57.729 33.333 0.00 0.00 0.00 2.90
1566 1653 2.904866 GTGCCTTGTTGCGGGACA 60.905 61.111 0.00 0.00 41.87 4.02
1582 1669 2.616330 CGCCAATTGCCTGTGTCGT 61.616 57.895 0.00 0.00 36.24 4.34
1693 1801 7.487822 TTTGGCACCCAATTTGATTATTCTA 57.512 32.000 0.00 0.00 43.55 2.10
1709 1817 4.506758 ACATAATGAAGCAATTTGGCACC 58.493 39.130 0.00 0.00 35.83 5.01
1725 1833 4.532834 ACCATGTAAAAGGCCGACATAAT 58.467 39.130 13.14 4.67 32.58 1.28
1773 1881 2.926778 TTGCCAAAATTTGTGGGAGG 57.073 45.000 7.72 4.46 37.81 4.30
1838 1946 2.122783 TGGCCTGCTGGTACAATAAC 57.877 50.000 11.69 0.00 38.70 1.89
1856 1964 6.542821 TGGGGATATGCTTACTAAGGAAATG 58.457 40.000 0.00 0.00 30.69 2.32
1953 2067 1.068610 TCAAATTTCAAGAAGCCGGCG 60.069 47.619 23.20 6.32 0.00 6.46
2689 2808 2.949447 AGCTTGGTTCTGGACAAACAT 58.051 42.857 0.00 0.00 0.00 2.71
2819 2938 1.819288 TGCTTTACTCTCTCTGTCGGG 59.181 52.381 0.00 0.00 0.00 5.14
2879 2998 2.300433 GTGCCTGATATGAATGCACCA 58.700 47.619 5.51 0.00 44.89 4.17
3003 3122 6.316390 CCACCAGGTTTCTGAAATCTATACAC 59.684 42.308 15.10 0.00 43.49 2.90
3097 3216 7.602517 ACTTCATATAAAAGAGCAGTGTCAC 57.397 36.000 0.00 0.00 0.00 3.67
3128 3247 5.680665 GCTTCCCTCTATTGCTGAATTTTGG 60.681 44.000 0.00 0.00 0.00 3.28
3224 3343 8.229137 CCTTTTGTTGTTGCATTAATACATTGG 58.771 33.333 0.00 0.00 0.00 3.16
3399 3519 1.445582 CCACGCGGGAACTACTGTC 60.446 63.158 11.66 0.00 40.01 3.51
3580 3711 9.396022 CCTACAGAAACAATACACTGGATAAAT 57.604 33.333 0.00 0.00 35.08 1.40
3793 4118 6.220930 GTTGAATATGATAGTAGTCGCCCAA 58.779 40.000 0.00 0.00 0.00 4.12
3817 4142 0.458543 AGTTCTGAGCATACACCGCG 60.459 55.000 0.00 0.00 0.00 6.46
3826 4151 1.649321 ACATGGAGGAGTTCTGAGCA 58.351 50.000 0.00 0.00 0.00 4.26
3848 4173 3.587061 TCAAGAACCATTCCCTGCTCTAA 59.413 43.478 0.00 0.00 0.00 2.10
3868 4193 3.998672 GACCCGACCCGCTTGTCA 61.999 66.667 3.78 0.00 34.88 3.58
3905 4230 0.317479 ACGTCAAAACTCGAGAGGGG 59.683 55.000 21.68 6.02 34.16 4.79
3916 4241 6.873605 AGATCATGACACTGATTACGTCAAAA 59.126 34.615 0.00 0.00 42.53 2.44
4273 4598 0.456221 CCGCTGAGACCGTAATGAGT 59.544 55.000 0.00 0.00 0.00 3.41
4277 4602 1.380785 TCCCCGCTGAGACCGTAAT 60.381 57.895 0.00 0.00 0.00 1.89
4279 4604 2.439701 CTCCCCGCTGAGACCGTA 60.440 66.667 0.00 0.00 34.11 4.02
4322 4647 4.946445 TGAGTTGTAATGTACGACACCAA 58.054 39.130 8.20 0.00 43.95 3.67
4579 4904 5.976534 CAGCTCATGTGATGTCTTAGTCTAC 59.023 44.000 4.89 0.00 0.00 2.59
4767 5106 6.920569 AACAAATCTTTACGATCGCCTTAT 57.079 33.333 16.60 0.00 0.00 1.73
4771 5110 5.957796 CAGTAAACAAATCTTTACGATCGCC 59.042 40.000 16.60 0.00 40.26 5.54
4867 5215 5.535406 ACAAGTGAACGGAGGGAGTATATAG 59.465 44.000 0.00 0.00 0.00 1.31
4881 5229 6.415702 TCGAAAAACATCTTACAAGTGAACG 58.584 36.000 0.00 0.00 0.00 3.95
4928 5280 5.147330 TGTTCACTCATTTCAGTCCGTAT 57.853 39.130 0.00 0.00 0.00 3.06
4929 5281 4.594123 TGTTCACTCATTTCAGTCCGTA 57.406 40.909 0.00 0.00 0.00 4.02
4930 5282 3.469008 TGTTCACTCATTTCAGTCCGT 57.531 42.857 0.00 0.00 0.00 4.69
4931 5283 3.364366 GCTTGTTCACTCATTTCAGTCCG 60.364 47.826 0.00 0.00 0.00 4.79
4946 5298 3.628017 ACGCATTTTAGTGTGCTTGTTC 58.372 40.909 0.00 0.00 39.16 3.18
4952 5304 7.402811 TGTATATAGACGCATTTTAGTGTGC 57.597 36.000 0.00 0.00 37.97 4.57
5008 5360 2.063979 CCTGGGTCCGCCACTGATA 61.064 63.158 0.00 0.00 36.17 2.15
5009 5361 3.402681 CCTGGGTCCGCCACTGAT 61.403 66.667 0.00 0.00 36.17 2.90
5011 5363 2.690653 TTTTCCTGGGTCCGCCACTG 62.691 60.000 0.00 0.00 36.17 3.66
5012 5364 2.002018 TTTTTCCTGGGTCCGCCACT 62.002 55.000 0.00 0.00 36.17 4.00
5013 5365 1.529713 TTTTTCCTGGGTCCGCCAC 60.530 57.895 0.00 0.00 36.17 5.01
5014 5366 2.927864 TTTTTCCTGGGTCCGCCA 59.072 55.556 0.00 0.00 36.17 5.69
5029 5381 3.177997 GTGTGCACACCCTTCATTTTT 57.822 42.857 34.94 0.00 40.85 1.94
5056 5408 5.393866 ACACATTGAGTAGGTGGGAATTTT 58.606 37.500 0.00 0.00 36.87 1.82
5057 5409 4.998051 ACACATTGAGTAGGTGGGAATTT 58.002 39.130 0.00 0.00 36.87 1.82
5059 5411 3.587061 TGACACATTGAGTAGGTGGGAAT 59.413 43.478 0.00 0.00 36.87 3.01
5063 5415 3.006859 TGTCTGACACATTGAGTAGGTGG 59.993 47.826 6.36 0.00 36.87 4.61
5064 5416 4.257267 TGTCTGACACATTGAGTAGGTG 57.743 45.455 6.36 0.00 38.47 4.00
5065 5417 4.955811 TTGTCTGACACATTGAGTAGGT 57.044 40.909 10.56 0.00 33.90 3.08
5067 5419 8.393366 CCATATTTTGTCTGACACATTGAGTAG 58.607 37.037 10.56 0.00 33.90 2.57
5068 5420 7.148255 GCCATATTTTGTCTGACACATTGAGTA 60.148 37.037 10.56 0.00 33.90 2.59
5074 5426 5.981088 TTGCCATATTTTGTCTGACACAT 57.019 34.783 10.56 8.30 33.90 3.21
5103 5455 8.834465 GTGAGATTTGCATTAAGATACTCATGT 58.166 33.333 0.00 0.00 35.06 3.21
5104 5456 8.833493 TGTGAGATTTGCATTAAGATACTCATG 58.167 33.333 0.00 0.00 35.06 3.07
5105 5457 8.969260 TGTGAGATTTGCATTAAGATACTCAT 57.031 30.769 0.00 0.00 35.06 2.90
5106 5458 8.668353 GTTGTGAGATTTGCATTAAGATACTCA 58.332 33.333 0.00 0.00 0.00 3.41
5107 5459 8.668353 TGTTGTGAGATTTGCATTAAGATACTC 58.332 33.333 0.00 0.00 0.00 2.59
5108 5460 8.565896 TGTTGTGAGATTTGCATTAAGATACT 57.434 30.769 0.00 0.00 0.00 2.12
5114 5466 9.979578 ACTAAATTGTTGTGAGATTTGCATTAA 57.020 25.926 0.00 0.00 0.00 1.40
5115 5467 9.624697 GACTAAATTGTTGTGAGATTTGCATTA 57.375 29.630 0.00 0.00 0.00 1.90
5118 5470 6.040278 TGGACTAAATTGTTGTGAGATTTGCA 59.960 34.615 0.00 0.00 0.00 4.08
5119 5471 6.363357 GTGGACTAAATTGTTGTGAGATTTGC 59.637 38.462 0.00 0.00 0.00 3.68
5120 5472 7.424803 TGTGGACTAAATTGTTGTGAGATTTG 58.575 34.615 0.00 0.00 0.00 2.32
5123 5475 7.581213 TTTGTGGACTAAATTGTTGTGAGAT 57.419 32.000 0.00 0.00 0.00 2.75
5124 5476 7.397892 TTTTGTGGACTAAATTGTTGTGAGA 57.602 32.000 0.00 0.00 0.00 3.27
5138 5490 8.408601 GCACATTTGAGATATATTTTGTGGACT 58.591 33.333 7.52 0.00 35.08 3.85
5139 5491 8.408601 AGCACATTTGAGATATATTTTGTGGAC 58.591 33.333 7.52 0.00 35.08 4.02
5141 5493 8.407832 TGAGCACATTTGAGATATATTTTGTGG 58.592 33.333 7.52 0.00 35.08 4.17
5142 5494 9.791820 TTGAGCACATTTGAGATATATTTTGTG 57.208 29.630 0.00 0.00 37.02 3.33
5152 6686 8.959548 TGTATTGTAATTGAGCACATTTGAGAT 58.040 29.630 2.11 0.00 0.00 2.75
5160 6694 8.094548 AGACTACTTGTATTGTAATTGAGCACA 58.905 33.333 0.00 0.00 0.00 4.57
5161 6695 8.480643 AGACTACTTGTATTGTAATTGAGCAC 57.519 34.615 0.00 0.00 0.00 4.40
5177 6711 8.988934 TGTGCTTCTTTAATGTAAGACTACTTG 58.011 33.333 0.00 0.00 37.53 3.16
5178 6712 9.555727 TTGTGCTTCTTTAATGTAAGACTACTT 57.444 29.630 0.00 0.00 39.81 2.24
5180 6714 8.989980 ACTTGTGCTTCTTTAATGTAAGACTAC 58.010 33.333 0.00 0.00 34.04 2.73
5182 6716 9.209175 CTACTTGTGCTTCTTTAATGTAAGACT 57.791 33.333 0.00 0.00 34.04 3.24
5183 6717 9.204570 TCTACTTGTGCTTCTTTAATGTAAGAC 57.795 33.333 0.00 0.00 34.04 3.01
5194 7164 9.066892 TGATGTAATTTTCTACTTGTGCTTCTT 57.933 29.630 0.00 0.00 0.00 2.52
5200 7170 9.436957 ACCTAGTGATGTAATTTTCTACTTGTG 57.563 33.333 0.00 0.00 0.00 3.33
5210 7180 8.964772 ACGTAGAGTTACCTAGTGATGTAATTT 58.035 33.333 0.00 0.00 30.35 1.82
5213 7183 7.928307 AACGTAGAGTTACCTAGTGATGTAA 57.072 36.000 0.00 0.00 42.14 2.41
5215 7185 6.830873 AAACGTAGAGTTACCTAGTGATGT 57.169 37.500 0.00 0.00 43.37 3.06
5217 7187 6.589139 GCAAAAACGTAGAGTTACCTAGTGAT 59.411 38.462 0.00 0.00 43.37 3.06
5218 7188 5.922544 GCAAAAACGTAGAGTTACCTAGTGA 59.077 40.000 0.00 0.00 43.37 3.41
5222 7192 6.347888 GCAATGCAAAAACGTAGAGTTACCTA 60.348 38.462 0.00 0.00 43.37 3.08
5223 7193 5.562113 GCAATGCAAAAACGTAGAGTTACCT 60.562 40.000 0.00 0.00 43.37 3.08
5224 7194 4.615541 GCAATGCAAAAACGTAGAGTTACC 59.384 41.667 0.00 0.00 43.37 2.85
5225 7195 4.615541 GGCAATGCAAAAACGTAGAGTTAC 59.384 41.667 7.79 0.00 43.37 2.50
5226 7196 4.276183 TGGCAATGCAAAAACGTAGAGTTA 59.724 37.500 7.79 0.00 43.37 2.24
5227 7197 3.067461 TGGCAATGCAAAAACGTAGAGTT 59.933 39.130 7.79 0.00 46.76 3.01
5228 7198 2.621055 TGGCAATGCAAAAACGTAGAGT 59.379 40.909 7.79 0.00 0.00 3.24
5229 7199 3.281341 TGGCAATGCAAAAACGTAGAG 57.719 42.857 7.79 0.00 0.00 2.43
5230 7200 3.254411 TCATGGCAATGCAAAAACGTAGA 59.746 39.130 7.79 0.00 33.47 2.59
5231 7201 3.573598 TCATGGCAATGCAAAAACGTAG 58.426 40.909 7.79 0.00 33.47 3.51
5233 7203 2.522836 TCATGGCAATGCAAAAACGT 57.477 40.000 7.79 0.00 33.47 3.99
5234 7204 3.801293 CTTTCATGGCAATGCAAAAACG 58.199 40.909 7.79 0.00 33.47 3.60
5235 7205 3.003482 TGCTTTCATGGCAATGCAAAAAC 59.997 39.130 7.79 0.00 36.71 2.43
5236 7206 3.211865 TGCTTTCATGGCAATGCAAAAA 58.788 36.364 7.79 0.78 36.71 1.94
5237 7207 2.847441 TGCTTTCATGGCAATGCAAAA 58.153 38.095 7.79 1.14 36.71 2.44
5239 7209 2.028020 TGATGCTTTCATGGCAATGCAA 60.028 40.909 7.79 0.00 43.14 4.08
5240 7210 1.550976 TGATGCTTTCATGGCAATGCA 59.449 42.857 7.79 9.28 43.14 3.96
5241 7211 2.303163 TGATGCTTTCATGGCAATGC 57.697 45.000 0.00 0.00 43.14 3.56
5242 7212 3.857052 AGTTGATGCTTTCATGGCAATG 58.143 40.909 0.00 0.00 43.14 2.82
5243 7213 5.128171 ACATAGTTGATGCTTTCATGGCAAT 59.872 36.000 0.00 0.00 43.14 3.56
5245 7215 4.018490 ACATAGTTGATGCTTTCATGGCA 58.982 39.130 0.00 0.00 44.05 4.92
5247 7217 5.823209 TGACATAGTTGATGCTTTCATGG 57.177 39.130 0.00 0.00 39.39 3.66
5248 7218 7.260558 AGATGACATAGTTGATGCTTTCATG 57.739 36.000 0.00 0.00 39.39 3.07
5250 7220 6.036408 CGAAGATGACATAGTTGATGCTTTCA 59.964 38.462 0.00 0.00 39.39 2.69
5251 7221 6.417327 CGAAGATGACATAGTTGATGCTTTC 58.583 40.000 0.00 0.00 39.39 2.62
5252 7222 5.220739 GCGAAGATGACATAGTTGATGCTTT 60.221 40.000 0.00 0.00 39.39 3.51
5253 7223 4.272018 GCGAAGATGACATAGTTGATGCTT 59.728 41.667 0.00 0.00 39.39 3.91
5254 7224 3.806521 GCGAAGATGACATAGTTGATGCT 59.193 43.478 0.00 0.00 39.39 3.79
5255 7225 3.806521 AGCGAAGATGACATAGTTGATGC 59.193 43.478 0.00 0.00 39.39 3.91
5256 7226 5.980698 AAGCGAAGATGACATAGTTGATG 57.019 39.130 0.00 0.00 41.79 3.07
5258 7228 6.208988 AGTAAGCGAAGATGACATAGTTGA 57.791 37.500 0.00 0.00 0.00 3.18
5259 7229 6.019479 GGAAGTAAGCGAAGATGACATAGTTG 60.019 42.308 0.00 0.00 0.00 3.16
5260 7230 6.043411 GGAAGTAAGCGAAGATGACATAGTT 58.957 40.000 0.00 0.00 0.00 2.24
5261 7231 5.127194 TGGAAGTAAGCGAAGATGACATAGT 59.873 40.000 0.00 0.00 0.00 2.12
5263 7233 5.592104 TGGAAGTAAGCGAAGATGACATA 57.408 39.130 0.00 0.00 0.00 2.29
5264 7234 4.471904 TGGAAGTAAGCGAAGATGACAT 57.528 40.909 0.00 0.00 0.00 3.06
5265 7235 3.953712 TGGAAGTAAGCGAAGATGACA 57.046 42.857 0.00 0.00 0.00 3.58
5266 7236 4.433615 TCATGGAAGTAAGCGAAGATGAC 58.566 43.478 0.00 0.00 0.00 3.06
5267 7237 4.736126 TCATGGAAGTAAGCGAAGATGA 57.264 40.909 0.00 0.00 0.00 2.92
5268 7238 4.631377 TGTTCATGGAAGTAAGCGAAGATG 59.369 41.667 0.00 0.00 0.00 2.90
5269 7239 4.631813 GTGTTCATGGAAGTAAGCGAAGAT 59.368 41.667 0.00 0.00 0.00 2.40
5271 7241 3.745975 TGTGTTCATGGAAGTAAGCGAAG 59.254 43.478 0.00 0.00 0.00 3.79
5272 7242 3.734463 TGTGTTCATGGAAGTAAGCGAA 58.266 40.909 0.00 0.00 0.00 4.70
5273 7243 3.394674 TGTGTTCATGGAAGTAAGCGA 57.605 42.857 0.00 0.00 0.00 4.93
5277 7247 3.008594 ACGGGATGTGTTCATGGAAGTAA 59.991 43.478 0.00 0.00 34.06 2.24
5278 7248 2.569853 ACGGGATGTGTTCATGGAAGTA 59.430 45.455 0.00 0.00 34.06 2.24
5279 7249 1.351017 ACGGGATGTGTTCATGGAAGT 59.649 47.619 0.00 0.00 34.06 3.01
5280 7250 2.113860 ACGGGATGTGTTCATGGAAG 57.886 50.000 0.00 0.00 34.06 3.46
5281 7251 2.577606 AACGGGATGTGTTCATGGAA 57.422 45.000 0.00 0.00 34.06 3.53
5282 7252 2.577606 AAACGGGATGTGTTCATGGA 57.422 45.000 0.00 0.00 34.06 3.41
5283 7253 4.981806 ATTAAACGGGATGTGTTCATGG 57.018 40.909 0.00 0.00 34.06 3.66
5286 7256 7.175119 TGACATTTATTAAACGGGATGTGTTCA 59.825 33.333 0.00 0.00 0.00 3.18
5287 7257 7.483691 GTGACATTTATTAAACGGGATGTGTTC 59.516 37.037 0.00 0.00 0.00 3.18
5288 7258 7.309920 GTGACATTTATTAAACGGGATGTGTT 58.690 34.615 0.00 0.00 0.00 3.32
5289 7259 6.127842 GGTGACATTTATTAAACGGGATGTGT 60.128 38.462 0.00 0.00 0.00 3.72
5291 7261 5.946972 TGGTGACATTTATTAAACGGGATGT 59.053 36.000 0.00 0.00 33.40 3.06
5292 7262 6.443934 TGGTGACATTTATTAAACGGGATG 57.556 37.500 0.00 0.00 33.40 3.51
5293 7263 6.405397 GCTTGGTGACATTTATTAAACGGGAT 60.405 38.462 0.00 0.00 42.32 3.85
5294 7264 5.106078 GCTTGGTGACATTTATTAAACGGGA 60.106 40.000 0.00 0.00 42.32 5.14
5295 7265 5.099575 GCTTGGTGACATTTATTAAACGGG 58.900 41.667 0.00 0.00 42.32 5.28
5296 7266 5.704888 TGCTTGGTGACATTTATTAAACGG 58.295 37.500 0.00 0.00 42.32 4.44
5297 7267 7.540400 TGATTGCTTGGTGACATTTATTAAACG 59.460 33.333 0.00 0.00 42.32 3.60
5299 7269 9.941325 AATGATTGCTTGGTGACATTTATTAAA 57.059 25.926 0.00 0.00 42.32 1.52
5301 7271 8.747471 TGAATGATTGCTTGGTGACATTTATTA 58.253 29.630 0.00 0.00 42.32 0.98
5302 7272 7.613585 TGAATGATTGCTTGGTGACATTTATT 58.386 30.769 0.00 0.00 42.32 1.40
5303 7273 7.172868 TGAATGATTGCTTGGTGACATTTAT 57.827 32.000 0.00 0.00 42.32 1.40
5310 7853 2.095110 CGCTTGAATGATTGCTTGGTGA 60.095 45.455 0.00 0.00 0.00 4.02
5311 7854 2.095110 TCGCTTGAATGATTGCTTGGTG 60.095 45.455 0.00 0.00 0.00 4.17
5317 7860 3.973135 GTGATGATCGCTTGAATGATTGC 59.027 43.478 0.00 0.00 0.00 3.56
5322 7865 5.695363 ACTATGAGTGATGATCGCTTGAATG 59.305 40.000 10.18 3.30 37.35 2.67
5323 7866 5.851720 ACTATGAGTGATGATCGCTTGAAT 58.148 37.500 10.18 7.34 37.35 2.57
5325 7868 4.926140 ACTATGAGTGATGATCGCTTGA 57.074 40.909 10.18 0.74 37.35 3.02
5326 7869 5.767269 ACTACTATGAGTGATGATCGCTTG 58.233 41.667 10.18 4.26 37.35 4.01
5327 7870 5.767665 AGACTACTATGAGTGATGATCGCTT 59.232 40.000 10.18 0.00 37.35 4.68
5328 7871 5.312895 AGACTACTATGAGTGATGATCGCT 58.687 41.667 8.45 8.45 40.41 4.93
5329 7872 5.621197 AGACTACTATGAGTGATGATCGC 57.379 43.478 0.00 0.00 0.00 4.58
5330 7873 7.195839 TGAAGACTACTATGAGTGATGATCG 57.804 40.000 0.00 0.00 0.00 3.69
5331 7874 8.629158 AGTTGAAGACTACTATGAGTGATGATC 58.371 37.037 0.00 0.00 36.65 2.92
5332 7875 8.532186 AGTTGAAGACTACTATGAGTGATGAT 57.468 34.615 0.00 0.00 36.65 2.45
5360 8209 9.814899 TTTTTCAGCAATGAATCTAGTGAAAAA 57.185 25.926 15.33 15.33 44.21 1.94
5366 8215 7.446625 AGAGTGTTTTTCAGCAATGAATCTAGT 59.553 33.333 0.00 0.00 0.00 2.57
5369 8218 6.645790 AGAGTGTTTTTCAGCAATGAATCT 57.354 33.333 0.00 0.00 0.00 2.40
5370 8219 7.436080 TGAAAGAGTGTTTTTCAGCAATGAATC 59.564 33.333 0.00 0.00 39.05 2.52
5371 8220 7.267128 TGAAAGAGTGTTTTTCAGCAATGAAT 58.733 30.769 0.00 0.00 39.05 2.57
5373 8222 6.206395 TGAAAGAGTGTTTTTCAGCAATGA 57.794 33.333 0.00 0.00 39.05 2.57
5375 8224 6.397272 TGTTGAAAGAGTGTTTTTCAGCAAT 58.603 32.000 12.63 0.00 45.97 3.56
5379 8228 5.734498 CGAGTGTTGAAAGAGTGTTTTTCAG 59.266 40.000 1.37 0.00 43.22 3.02
5381 8230 4.495828 GCGAGTGTTGAAAGAGTGTTTTTC 59.504 41.667 0.00 0.00 35.59 2.29
5382 8231 4.412207 GCGAGTGTTGAAAGAGTGTTTTT 58.588 39.130 0.00 0.00 0.00 1.94
5384 8233 2.354821 GGCGAGTGTTGAAAGAGTGTTT 59.645 45.455 0.00 0.00 0.00 2.83
5387 8236 0.508641 CGGCGAGTGTTGAAAGAGTG 59.491 55.000 0.00 0.00 0.00 3.51
5388 8237 0.104304 ACGGCGAGTGTTGAAAGAGT 59.896 50.000 16.62 0.00 0.00 3.24
5393 8242 1.593209 GGTGACGGCGAGTGTTGAA 60.593 57.895 16.62 0.00 0.00 2.69
5396 8245 2.279918 GTGGTGACGGCGAGTGTT 60.280 61.111 16.62 0.00 0.00 3.32
5397 8246 4.295119 GGTGGTGACGGCGAGTGT 62.295 66.667 16.62 0.00 0.00 3.55
5405 8254 1.798283 TGATTTTACCGGTGGTGACG 58.202 50.000 19.93 0.00 36.19 4.35
5406 8255 5.587043 TGATATTGATTTTACCGGTGGTGAC 59.413 40.000 19.93 6.66 36.19 3.67
5407 8256 5.746284 TGATATTGATTTTACCGGTGGTGA 58.254 37.500 19.93 0.11 36.19 4.02
5408 8257 6.443934 TTGATATTGATTTTACCGGTGGTG 57.556 37.500 19.93 0.00 36.19 4.17
5442 8641 8.462016 GCATGTTCTTTATGATTTGGTCTACTT 58.538 33.333 0.00 0.00 0.00 2.24
5443 8642 7.831193 AGCATGTTCTTTATGATTTGGTCTACT 59.169 33.333 0.00 0.00 0.00 2.57
5445 8644 8.579850 AAGCATGTTCTTTATGATTTGGTCTA 57.420 30.769 0.00 0.00 30.69 2.59
5446 8645 7.395489 AGAAGCATGTTCTTTATGATTTGGTCT 59.605 33.333 0.00 0.00 34.62 3.85
5447 8646 7.542025 AGAAGCATGTTCTTTATGATTTGGTC 58.458 34.615 0.00 0.00 34.62 4.02
5448 8647 7.472334 AGAAGCATGTTCTTTATGATTTGGT 57.528 32.000 0.00 0.00 34.62 3.67
5449 8648 8.767478 AAAGAAGCATGTTCTTTATGATTTGG 57.233 30.769 23.09 0.00 44.29 3.28
5455 8654 9.438291 CGGTATTAAAGAAGCATGTTCTTTATG 57.562 33.333 26.21 17.23 45.14 1.90
5457 8656 8.662141 GTCGGTATTAAAGAAGCATGTTCTTTA 58.338 33.333 24.14 24.14 44.29 1.85
5459 8658 6.183360 CGTCGGTATTAAAGAAGCATGTTCTT 60.183 38.462 13.96 13.96 40.20 2.52
5460 8659 5.291128 CGTCGGTATTAAAGAAGCATGTTCT 59.709 40.000 0.00 0.00 0.00 3.01
5461 8660 5.063060 ACGTCGGTATTAAAGAAGCATGTTC 59.937 40.000 0.00 0.00 0.00 3.18
5464 8663 4.822107 CACGTCGGTATTAAAGAAGCATG 58.178 43.478 0.00 0.00 0.00 4.06


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.