Multiple sequence alignment - TraesCS4B01G231900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G231900 chr4B 100.000 8381 0 0 1 8381 483743051 483751431 0.000000e+00 15477.0
1 TraesCS4B01G231900 chr4B 89.777 2426 194 23 2779 5168 404484456 404486863 0.000000e+00 3057.0
2 TraesCS4B01G231900 chr4B 86.294 788 90 10 998 1768 404460819 404461605 0.000000e+00 841.0
3 TraesCS4B01G231900 chr4B 89.603 529 41 7 5355 5870 404486785 404487312 0.000000e+00 660.0
4 TraesCS4B01G231900 chr4B 87.544 562 64 5 6781 7337 404512177 404512737 0.000000e+00 645.0
5 TraesCS4B01G231900 chr4B 86.387 191 21 4 5977 6166 404506473 404506659 3.970000e-48 204.0
6 TraesCS4B01G231900 chr4B 98.214 56 1 0 6482 6537 482659546 482659601 1.930000e-16 99.0
7 TraesCS4B01G231900 chr4D 95.788 2469 79 10 2756 5205 394130457 394132919 0.000000e+00 3960.0
8 TraesCS4B01G231900 chr4D 89.841 2648 195 28 2569 5168 323920088 323922709 0.000000e+00 3332.0
9 TraesCS4B01G231900 chr4D 90.441 1632 107 24 209 1808 394126523 394128137 0.000000e+00 2104.0
10 TraesCS4B01G231900 chr4D 93.257 964 42 10 1807 2762 394128203 394129151 0.000000e+00 1399.0
11 TraesCS4B01G231900 chr4D 96.269 804 26 2 6540 7340 394133855 394134657 0.000000e+00 1315.0
12 TraesCS4B01G231900 chr4D 94.628 819 34 5 5355 6166 394132904 394133719 0.000000e+00 1260.0
13 TraesCS4B01G231900 chr4D 88.764 801 80 8 6540 7332 323926869 323927667 0.000000e+00 972.0
14 TraesCS4B01G231900 chr4D 86.718 783 84 14 986 1750 323917653 323918433 0.000000e+00 852.0
15 TraesCS4B01G231900 chr4D 97.906 191 4 0 8191 8381 394135183 394135373 1.740000e-86 331.0
16 TraesCS4B01G231900 chr4D 88.646 229 14 2 1 222 394126276 394126499 1.390000e-67 268.0
17 TraesCS4B01G231900 chr4D 79.125 297 31 17 5872 6166 323926470 323926737 8.650000e-40 176.0
18 TraesCS4B01G231900 chr4D 94.286 70 3 1 5099 5168 394132912 394132980 1.150000e-18 106.0
19 TraesCS4B01G231900 chr4D 95.082 61 2 1 6478 6538 367720763 367720822 2.490000e-15 95.3
20 TraesCS4B01G231900 chr4D 95.000 60 3 0 6430 6489 394133735 394133794 2.490000e-15 95.3
21 TraesCS4B01G231900 chr4D 100.000 36 0 0 8159 8194 394135199 394135164 5.430000e-07 67.6
22 TraesCS4B01G231900 chr4A 90.106 2648 188 29 2569 5168 147574834 147572213 0.000000e+00 3371.0
23 TraesCS4B01G231900 chr4A 88.820 805 80 8 6541 7337 147567863 147567061 0.000000e+00 979.0
24 TraesCS4B01G231900 chr4A 86.979 768 81 12 1001 1750 147581931 147581165 0.000000e+00 846.0
25 TraesCS4B01G231900 chr4A 89.981 529 38 7 5355 5870 147572291 147571765 0.000000e+00 669.0
26 TraesCS4B01G231900 chr4A 91.133 203 6 1 8191 8381 75418441 75418643 1.790000e-66 265.0
27 TraesCS4B01G231900 chr4A 96.026 151 5 1 5208 5357 558273826 558273676 2.340000e-60 244.0
28 TraesCS4B01G231900 chr4A 87.097 186 19 4 5977 6161 147568183 147568002 1.100000e-48 206.0
29 TraesCS4B01G231900 chr4A 93.651 63 4 0 6478 6540 91085169 91085107 2.490000e-15 95.3
30 TraesCS4B01G231900 chr4A 100.000 36 0 0 8159 8194 75418457 75418422 5.430000e-07 67.6
31 TraesCS4B01G231900 chr2A 90.864 2430 181 25 2775 5168 568275767 568278191 0.000000e+00 3219.0
32 TraesCS4B01G231900 chr2A 90.021 2425 200 23 2778 5166 547004787 547002369 0.000000e+00 3099.0
33 TraesCS4B01G231900 chr2A 89.938 2425 202 23 2778 5166 546794422 546792004 0.000000e+00 3088.0
34 TraesCS4B01G231900 chr2A 90.897 2285 168 24 2920 5168 567728933 567731213 0.000000e+00 3031.0
35 TraesCS4B01G231900 chr2A 96.954 788 5 3 7391 8160 578667853 578667067 0.000000e+00 1304.0
36 TraesCS4B01G231900 chr2A 88.571 805 79 9 6541 7337 568282642 568283441 0.000000e+00 965.0
37 TraesCS4B01G231900 chr2A 88.272 793 83 7 6541 7326 567733441 567734230 0.000000e+00 941.0
38 TraesCS4B01G231900 chr2A 87.578 805 89 8 6541 7337 546774579 546773778 0.000000e+00 922.0
39 TraesCS4B01G231900 chr2A 91.053 570 51 0 999 1568 568273051 568273620 0.000000e+00 771.0
40 TraesCS4B01G231900 chr2A 90.210 572 52 3 998 1568 567725768 567726336 0.000000e+00 743.0
41 TraesCS4B01G231900 chr2A 88.928 569 61 2 1001 1568 547036091 547035524 0.000000e+00 701.0
42 TraesCS4B01G231900 chr2A 90.548 529 37 6 5355 5870 568278113 568278641 0.000000e+00 688.0
43 TraesCS4B01G231900 chr2A 90.133 527 40 6 5355 5870 567731135 567731660 0.000000e+00 675.0
44 TraesCS4B01G231900 chr2A 82.550 298 27 14 5872 6166 568282233 568282508 1.090000e-58 239.0
45 TraesCS4B01G231900 chr2A 79.621 211 23 10 5870 6078 546775022 546774830 5.280000e-27 134.0
46 TraesCS4B01G231900 chr2A 88.350 103 8 3 6064 6166 567733127 567733225 4.110000e-23 121.0
47 TraesCS4B01G231900 chr2B 90.849 2426 180 26 2780 5168 494252746 494255166 0.000000e+00 3212.0
48 TraesCS4B01G231900 chr2B 90.531 2429 189 25 2775 5168 493981032 493983454 0.000000e+00 3173.0
49 TraesCS4B01G231900 chr2B 95.680 787 10 10 7391 8160 765484734 765485513 0.000000e+00 1243.0
50 TraesCS4B01G231900 chr2B 94.823 792 19 4 7386 8160 493262701 493261915 0.000000e+00 1216.0
51 TraesCS4B01G231900 chr2B 89.441 805 75 8 6541 7337 494259975 494260777 0.000000e+00 1007.0
52 TraesCS4B01G231900 chr2B 99.444 540 3 0 7621 8160 9093379 9092840 0.000000e+00 981.0
53 TraesCS4B01G231900 chr2B 88.323 805 84 7 6541 7337 493985706 493986508 0.000000e+00 957.0
54 TraesCS4B01G231900 chr2B 91.243 571 50 0 998 1568 493977645 493978215 0.000000e+00 778.0
55 TraesCS4B01G231900 chr2B 90.368 571 55 0 998 1568 494250883 494251453 0.000000e+00 750.0
56 TraesCS4B01G231900 chr2B 91.329 519 34 5 5360 5868 493983381 493983898 0.000000e+00 699.0
57 TraesCS4B01G231900 chr2B 90.548 529 35 8 5355 5870 494255088 494255614 0.000000e+00 686.0
58 TraesCS4B01G231900 chr2B 74.262 474 94 19 1 457 494249546 494250008 3.110000e-39 174.0
59 TraesCS4B01G231900 chr2B 80.769 208 17 11 5870 6075 494259533 494259719 3.150000e-29 141.0
60 TraesCS4B01G231900 chr2B 98.214 56 1 0 6482 6537 551551629 551551574 1.930000e-16 99.0
61 TraesCS4B01G231900 chr2B 95.745 47 1 1 6029 6075 493985326 493985371 3.240000e-09 75.0
62 TraesCS4B01G231900 chr2D 90.482 2427 184 25 2778 5168 421777213 421779628 0.000000e+00 3158.0
63 TraesCS4B01G231900 chr2D 90.357 2437 188 28 2775 5168 421471463 421473895 0.000000e+00 3155.0
64 TraesCS4B01G231900 chr2D 86.624 927 98 19 6429 7335 421791415 421792335 0.000000e+00 1002.0
65 TraesCS4B01G231900 chr2D 88.820 805 80 7 6541 7337 421476283 421477085 0.000000e+00 979.0
66 TraesCS4B01G231900 chr2D 92.119 571 45 0 998 1568 421468076 421468646 0.000000e+00 806.0
67 TraesCS4B01G231900 chr2D 91.594 571 47 1 998 1568 421774416 421774985 0.000000e+00 787.0
68 TraesCS4B01G231900 chr2D 91.115 529 33 7 5355 5870 421779550 421780077 0.000000e+00 704.0
69 TraesCS4B01G231900 chr2D 89.695 524 39 8 5355 5868 421473817 421474335 0.000000e+00 654.0
70 TraesCS4B01G231900 chr2D 97.541 244 5 1 6165 6408 220942855 220943097 4.680000e-112 416.0
71 TraesCS4B01G231900 chr2D 94.297 263 14 1 6161 6423 200212151 200212412 1.310000e-107 401.0
72 TraesCS4B01G231900 chr2D 92.941 170 9 3 5203 5370 458883763 458883931 2.340000e-60 244.0
73 TraesCS4B01G231900 chr2D 94.839 155 5 3 5197 5348 198137181 198137335 1.090000e-58 239.0
74 TraesCS4B01G231900 chr2D 74.473 474 87 21 1 457 421773139 421773595 3.110000e-39 174.0
75 TraesCS4B01G231900 chr1D 85.163 1968 227 33 3150 5092 376293896 376291969 0.000000e+00 1956.0
76 TraesCS4B01G231900 chr1D 81.678 1299 154 40 2438 3689 376322271 376321010 0.000000e+00 1003.0
77 TraesCS4B01G231900 chr1D 82.609 1150 146 28 2574 3689 376298403 376297274 0.000000e+00 966.0
78 TraesCS4B01G231900 chr1D 81.960 1153 149 32 2574 3689 376318253 376317123 0.000000e+00 922.0
79 TraesCS4B01G231900 chr1D 86.306 555 53 12 3150 3689 376291703 376291157 4.360000e-162 582.0
80 TraesCS4B01G231900 chr1D 96.761 247 7 1 6161 6407 116074698 116074943 2.180000e-110 411.0
81 TraesCS4B01G231900 chr1D 96.761 247 7 1 6161 6407 220162921 220163166 2.180000e-110 411.0
82 TraesCS4B01G231900 chr1D 83.371 445 52 9 2405 2831 376324665 376324225 7.890000e-105 392.0
83 TraesCS4B01G231900 chr1D 96.622 148 3 2 5207 5353 108648905 108649051 2.340000e-60 244.0
84 TraesCS4B01G231900 chr1D 95.588 136 6 0 3152 3287 376291933 376291798 1.420000e-52 219.0
85 TraesCS4B01G231900 chr7A 98.837 774 7 2 7387 8160 9011879 9011108 0.000000e+00 1378.0
86 TraesCS4B01G231900 chr7A 90.055 181 9 9 5175 5348 95296652 95296830 8.460000e-55 226.0
87 TraesCS4B01G231900 chr1A 96.863 797 4 5 7382 8160 23183167 23183960 0.000000e+00 1314.0
88 TraesCS4B01G231900 chr1A 81.652 1150 155 32 2574 3689 475778085 475776958 0.000000e+00 904.0
89 TraesCS4B01G231900 chr1A 80.582 1169 154 38 2574 3689 475774249 475773101 0.000000e+00 833.0
90 TraesCS4B01G231900 chr1A 84.926 544 58 13 3158 3689 475766809 475766278 5.760000e-146 529.0
91 TraesCS4B01G231900 chr1A 96.721 244 4 3 7387 7630 300941733 300941494 3.640000e-108 403.0
92 TraesCS4B01G231900 chr5B 95.726 702 12 2 7476 8160 262052205 262051505 0.000000e+00 1114.0
93 TraesCS4B01G231900 chr5B 91.786 280 17 5 7391 7666 386563019 386562742 1.320000e-102 385.0
94 TraesCS4B01G231900 chr5B 94.937 158 7 1 5206 5363 308892396 308892552 6.500000e-61 246.0
95 TraesCS4B01G231900 chr5D 92.239 786 40 14 7386 8160 56056866 56056091 0.000000e+00 1094.0
96 TraesCS4B01G231900 chr5D 97.951 244 5 0 6165 6408 301730813 301731056 2.800000e-114 424.0
97 TraesCS4B01G231900 chr5D 96.667 60 2 0 6481 6540 547057207 547057266 5.350000e-17 100.0
98 TraesCS4B01G231900 chr6B 97.436 546 12 2 7616 8160 488848035 488847491 0.000000e+00 929.0
99 TraesCS4B01G231900 chr6B 94.684 602 15 1 7576 8160 512215749 512216350 0.000000e+00 918.0
100 TraesCS4B01G231900 chr6B 78.398 412 73 14 2403 2806 129477775 129478178 3.880000e-63 254.0
101 TraesCS4B01G231900 chr6B 92.800 125 6 3 2271 2394 18951156 18951034 2.400000e-40 178.0
102 TraesCS4B01G231900 chr6B 100.000 53 0 0 6486 6538 292242 292294 1.930000e-16 99.0
103 TraesCS4B01G231900 chr6B 100.000 53 0 0 6486 6538 187836770 187836822 1.930000e-16 99.0
104 TraesCS4B01G231900 chr1B 84.144 946 114 27 2403 3327 502954249 502953319 0.000000e+00 883.0
105 TraesCS4B01G231900 chr1B 82.784 546 65 13 2403 2928 502948348 502947812 2.130000e-125 460.0
106 TraesCS4B01G231900 chr1B 83.122 237 40 0 1352 1588 502845260 502845024 5.090000e-52 217.0
107 TraesCS4B01G231900 chr1B 82.700 237 40 1 1352 1588 502935351 502935116 8.520000e-50 209.0
108 TraesCS4B01G231900 chr1B 87.407 135 16 1 5957 6090 502817029 502816895 4.050000e-33 154.0
109 TraesCS4B01G231900 chr1B 100.000 53 0 0 6486 6538 57618135 57618187 1.930000e-16 99.0
110 TraesCS4B01G231900 chr7D 97.531 243 6 0 6165 6407 131525444 131525202 4.680000e-112 416.0
111 TraesCS4B01G231900 chr7D 96.386 249 8 1 6159 6407 195276762 195277009 7.830000e-110 409.0
112 TraesCS4B01G231900 chr3D 97.166 247 5 2 6161 6407 272661326 272661570 4.680000e-112 416.0
113 TraesCS4B01G231900 chr3D 98.246 57 1 0 6482 6538 14846667 14846723 5.350000e-17 100.0
114 TraesCS4B01G231900 chr3B 96.774 248 7 1 6160 6407 371335851 371335605 6.050000e-111 412.0
115 TraesCS4B01G231900 chr3B 89.231 130 13 1 1385 1514 7246858 7246986 2.420000e-35 161.0
116 TraesCS4B01G231900 chr3A 90.385 312 10 11 7395 7689 691368771 691368463 7.890000e-105 392.0
117 TraesCS4B01G231900 chr3A 81.497 481 73 9 2794 3266 738182874 738182402 1.710000e-101 381.0
118 TraesCS4B01G231900 chr3A 95.299 234 9 1 7395 7628 725055692 725055923 3.700000e-98 370.0
119 TraesCS4B01G231900 chr3A 96.689 151 3 2 5206 5354 121379640 121379790 5.020000e-62 250.0
120 TraesCS4B01G231900 chr6D 97.241 145 4 0 5206 5350 15121104 15121248 6.500000e-61 246.0
121 TraesCS4B01G231900 chr6D 94.839 155 7 1 5205 5358 220750565 220750411 3.020000e-59 241.0
122 TraesCS4B01G231900 chrUn 79.553 313 52 10 2401 2708 37054566 37054871 6.590000e-51 213.0
123 TraesCS4B01G231900 chrUn 79.006 181 20 3 2716 2881 37054984 37055161 3.200000e-19 108.0
124 TraesCS4B01G231900 chr7B 81.091 275 45 4 2829 3102 592536628 592536896 6.590000e-51 213.0
125 TraesCS4B01G231900 chr5A 81.818 187 33 1 2794 2980 547824511 547824326 1.130000e-33 156.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G231900 chr4B 483743051 483751431 8380 False 15477.000000 15477 100.000000 1 8381 1 chr4B.!!$F5 8380
1 TraesCS4B01G231900 chr4B 404484456 404487312 2856 False 1858.500000 3057 89.690000 2779 5870 2 chr4B.!!$F6 3091
2 TraesCS4B01G231900 chr4B 404460819 404461605 786 False 841.000000 841 86.294000 998 1768 1 chr4B.!!$F1 770
3 TraesCS4B01G231900 chr4B 404512177 404512737 560 False 645.000000 645 87.544000 6781 7337 1 chr4B.!!$F3 556
4 TraesCS4B01G231900 chr4D 323917653 323927667 10014 False 1333.000000 3332 86.112000 986 7332 4 chr4D.!!$F2 6346
5 TraesCS4B01G231900 chr4D 394126276 394135373 9097 False 1204.255556 3960 94.024556 1 8381 9 chr4D.!!$F3 8380
6 TraesCS4B01G231900 chr4A 147567061 147574834 7773 True 1306.250000 3371 89.001000 2569 7337 4 chr4A.!!$R5 4768
7 TraesCS4B01G231900 chr4A 147581165 147581931 766 True 846.000000 846 86.979000 1001 1750 1 chr4A.!!$R3 749
8 TraesCS4B01G231900 chr2A 547002369 547004787 2418 True 3099.000000 3099 90.021000 2778 5166 1 chr2A.!!$R2 2388
9 TraesCS4B01G231900 chr2A 546792004 546794422 2418 True 3088.000000 3088 89.938000 2778 5166 1 chr2A.!!$R1 2388
10 TraesCS4B01G231900 chr2A 578667067 578667853 786 True 1304.000000 1304 96.954000 7391 8160 1 chr2A.!!$R4 769
11 TraesCS4B01G231900 chr2A 568273051 568283441 10390 False 1176.400000 3219 88.717200 999 7337 5 chr2A.!!$F2 6338
12 TraesCS4B01G231900 chr2A 567725768 567734230 8462 False 1102.200000 3031 89.572400 998 7326 5 chr2A.!!$F1 6328
13 TraesCS4B01G231900 chr2A 547035524 547036091 567 True 701.000000 701 88.928000 1001 1568 1 chr2A.!!$R3 567
14 TraesCS4B01G231900 chr2A 546773778 546775022 1244 True 528.000000 922 83.599500 5870 7337 2 chr2A.!!$R5 1467
15 TraesCS4B01G231900 chr2B 765484734 765485513 779 False 1243.000000 1243 95.680000 7391 8160 1 chr2B.!!$F1 769
16 TraesCS4B01G231900 chr2B 493261915 493262701 786 True 1216.000000 1216 94.823000 7386 8160 1 chr2B.!!$R2 774
17 TraesCS4B01G231900 chr2B 493977645 493986508 8863 False 1136.400000 3173 91.434200 998 7337 5 chr2B.!!$F2 6339
18 TraesCS4B01G231900 chr2B 494249546 494260777 11231 False 995.000000 3212 86.039500 1 7337 6 chr2B.!!$F3 7336
19 TraesCS4B01G231900 chr2B 9092840 9093379 539 True 981.000000 981 99.444000 7621 8160 1 chr2B.!!$R1 539
20 TraesCS4B01G231900 chr2D 421468076 421477085 9009 False 1398.500000 3155 90.247750 998 7337 4 chr2D.!!$F6 6339
21 TraesCS4B01G231900 chr2D 421773139 421780077 6938 False 1205.750000 3158 86.916000 1 5870 4 chr2D.!!$F7 5869
22 TraesCS4B01G231900 chr2D 421791415 421792335 920 False 1002.000000 1002 86.624000 6429 7335 1 chr2D.!!$F4 906
23 TraesCS4B01G231900 chr1D 376291157 376298403 7246 True 930.750000 1956 87.416500 2574 5092 4 chr1D.!!$R1 2518
24 TraesCS4B01G231900 chr1D 376317123 376324665 7542 True 772.333333 1003 82.336333 2405 3689 3 chr1D.!!$R2 1284
25 TraesCS4B01G231900 chr7A 9011108 9011879 771 True 1378.000000 1378 98.837000 7387 8160 1 chr7A.!!$R1 773
26 TraesCS4B01G231900 chr1A 23183167 23183960 793 False 1314.000000 1314 96.863000 7382 8160 1 chr1A.!!$F1 778
27 TraesCS4B01G231900 chr1A 475773101 475778085 4984 True 868.500000 904 81.117000 2574 3689 2 chr1A.!!$R3 1115
28 TraesCS4B01G231900 chr1A 475766278 475766809 531 True 529.000000 529 84.926000 3158 3689 1 chr1A.!!$R2 531
29 TraesCS4B01G231900 chr5B 262051505 262052205 700 True 1114.000000 1114 95.726000 7476 8160 1 chr5B.!!$R1 684
30 TraesCS4B01G231900 chr5D 56056091 56056866 775 True 1094.000000 1094 92.239000 7386 8160 1 chr5D.!!$R1 774
31 TraesCS4B01G231900 chr6B 488847491 488848035 544 True 929.000000 929 97.436000 7616 8160 1 chr6B.!!$R2 544
32 TraesCS4B01G231900 chr6B 512215749 512216350 601 False 918.000000 918 94.684000 7576 8160 1 chr6B.!!$F4 584
33 TraesCS4B01G231900 chr1B 502953319 502954249 930 True 883.000000 883 84.144000 2403 3327 1 chr1B.!!$R5 924
34 TraesCS4B01G231900 chr1B 502947812 502948348 536 True 460.000000 460 82.784000 2403 2928 1 chr1B.!!$R4 525

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
457 512 0.036671 CGAGGGAGTACCAAACCCAC 60.037 60.0 14.49 9.07 45.43 4.61 F
669 1100 0.179097 GCCGAACTTGCCTCCTCTAG 60.179 60.0 0.00 0.00 0.00 2.43 F
677 1108 0.478942 TGCCTCCTCTAGTCGCCTAT 59.521 55.0 0.00 0.00 0.00 2.57 F
678 1109 0.885196 GCCTCCTCTAGTCGCCTATG 59.115 60.0 0.00 0.00 0.00 2.23 F
1857 5600 0.906775 GGACCGTTGAATCTGGGGTA 59.093 55.0 0.00 0.00 0.00 3.69 F
3458 18146 0.178990 GTTCCCCTTGTTGACTGCCT 60.179 55.0 0.00 0.00 0.00 4.75 F
5295 22093 0.331278 TACCATGCCTTGAACCTGGG 59.669 55.0 0.00 0.00 0.00 4.45 F
6234 27879 0.108186 CTGCAACATAGGCCGTCTGA 60.108 55.0 8.92 0.00 0.00 3.27 F
6299 27944 0.031010 AGATACCCACACCCCTCTCC 60.031 60.0 0.00 0.00 0.00 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2369 6116 0.325602 TTACGGGCAAACAGTAGGGG 59.674 55.000 0.00 0.0 31.42 4.79 R
2630 7752 2.459555 CCCCCAAAATAGTCCAGCAT 57.540 50.000 0.00 0.0 0.00 3.79 R
2792 9243 6.974795 AGGGAGGATTTACATCTAAAGCTTT 58.025 36.000 17.30 17.3 30.35 3.51 R
2807 9258 6.465035 GCTCATGTAAGTATCAAGGGAGGATT 60.465 42.308 0.00 0.0 0.00 3.01 R
3765 18453 1.134280 CCTCAGGTCCCAAGCAGTATG 60.134 57.143 0.00 0.0 40.87 2.39 R
5315 22113 0.326238 TAGCCTAGTGGTGGGAAGGG 60.326 60.000 0.00 0.0 35.27 3.95 R
6280 27925 0.031010 GGAGAGGGGTGTGGGTATCT 60.031 60.000 0.00 0.0 0.00 1.98 R
7374 29138 0.033011 GGGGCAGGACTCTCTAGTGA 60.033 60.000 0.00 0.0 35.56 3.41 R
8163 29947 0.179111 GATGGCGTGCTGTAGCTGTA 60.179 55.000 5.38 0.0 42.66 2.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
88 89 8.084684 GCTCGATATATAGCATATTGACCATCA 58.915 37.037 3.09 0.00 38.63 3.07
129 137 6.877611 AGTCTTTTTGGTAGTGTGTAATGG 57.122 37.500 0.00 0.00 0.00 3.16
163 171 1.899142 GCATGGCCCCTTTTACTTTCA 59.101 47.619 0.00 0.00 0.00 2.69
178 186 0.519519 TTTCACCGCCATGCTTAACG 59.480 50.000 0.00 0.00 0.00 3.18
181 189 2.124901 CCGCCATGCTTAACGGGA 60.125 61.111 4.96 0.00 41.95 5.14
182 190 2.180204 CCGCCATGCTTAACGGGAG 61.180 63.158 4.96 0.00 41.95 4.30
203 211 2.368548 GGGGAGCAATTGTTTTCCAACT 59.631 45.455 20.14 3.63 35.44 3.16
204 212 3.181455 GGGGAGCAATTGTTTTCCAACTT 60.181 43.478 20.14 0.00 35.44 2.66
222 230 6.605594 TCCAACTTAAAGGCTTTCTCTTTTCA 59.394 34.615 17.13 0.00 36.12 2.69
226 271 8.237811 ACTTAAAGGCTTTCTCTTTTCAATGA 57.762 30.769 17.13 0.00 36.12 2.57
233 278 9.638176 AGGCTTTCTCTTTTCAATGACATATAT 57.362 29.630 0.00 0.00 0.00 0.86
264 309 8.500753 TGTAACATTTTAGGCTAGTTATGGTG 57.499 34.615 11.22 2.28 0.00 4.17
273 318 8.726870 TTAGGCTAGTTATGGTGATTGTTTAC 57.273 34.615 0.00 0.00 0.00 2.01
317 362 4.097892 ACTTTTCATTTTCAACGGAGTGCT 59.902 37.500 0.00 0.00 45.00 4.40
406 461 5.659440 ATACAAGCACAAAATTACAGGGG 57.341 39.130 0.00 0.00 0.00 4.79
448 503 4.643784 TCATCTTTAACCTCGAGGGAGTAC 59.356 45.833 34.04 0.00 38.70 2.73
457 512 0.036671 CGAGGGAGTACCAAACCCAC 60.037 60.000 14.49 9.07 45.43 4.61
458 513 0.036671 GAGGGAGTACCAAACCCACG 60.037 60.000 14.49 0.00 45.43 4.94
465 520 0.838608 TACCAAACCCACGACAACCT 59.161 50.000 0.00 0.00 0.00 3.50
472 527 1.064240 ACCCACGACAACCTTTTTCCT 60.064 47.619 0.00 0.00 0.00 3.36
502 557 1.940613 GGTGATAACGGTGCCATCTTC 59.059 52.381 0.00 0.00 0.00 2.87
541 611 3.505808 GTTGCTGACGAGCTTCTCT 57.494 52.632 0.00 0.00 46.39 3.10
544 614 3.318017 GTTGCTGACGAGCTTCTCTTTA 58.682 45.455 0.00 0.00 46.39 1.85
549 619 5.120830 TGCTGACGAGCTTCTCTTTATTTTC 59.879 40.000 0.00 0.00 46.39 2.29
550 620 5.120830 GCTGACGAGCTTCTCTTTATTTTCA 59.879 40.000 0.00 0.00 42.52 2.69
568 999 3.781341 TCAACTTTATTGTCGTCACGC 57.219 42.857 0.00 0.00 0.00 5.34
579 1010 2.098233 CGTCACGCCGCCTACAAAT 61.098 57.895 0.00 0.00 0.00 2.32
584 1015 2.004017 CACGCCGCCTACAAATTAGAA 58.996 47.619 0.00 0.00 0.00 2.10
589 1020 1.937899 CGCCTACAAATTAGAACGGGG 59.062 52.381 0.00 0.00 0.00 5.73
633 1064 6.828785 GGGTGTATTCAGTTCAATTCCACTAT 59.171 38.462 0.00 0.00 0.00 2.12
642 1073 5.948162 AGTTCAATTCCACTATCACTGCAAT 59.052 36.000 0.00 0.00 0.00 3.56
660 1091 3.304293 GCAATAATCTTTGCCGAACTTGC 59.696 43.478 0.00 0.00 44.94 4.01
661 1092 3.782889 ATAATCTTTGCCGAACTTGCC 57.217 42.857 0.00 0.00 0.00 4.52
663 1094 1.168714 ATCTTTGCCGAACTTGCCTC 58.831 50.000 0.00 0.00 0.00 4.70
668 1099 0.902984 TGCCGAACTTGCCTCCTCTA 60.903 55.000 0.00 0.00 0.00 2.43
669 1100 0.179097 GCCGAACTTGCCTCCTCTAG 60.179 60.000 0.00 0.00 0.00 2.43
677 1108 0.478942 TGCCTCCTCTAGTCGCCTAT 59.521 55.000 0.00 0.00 0.00 2.57
678 1109 0.885196 GCCTCCTCTAGTCGCCTATG 59.115 60.000 0.00 0.00 0.00 2.23
684 1116 3.388024 TCCTCTAGTCGCCTATGCATTTT 59.612 43.478 3.54 0.00 37.32 1.82
690 1122 1.401552 TCGCCTATGCATTTTGCTCAC 59.598 47.619 3.54 0.00 45.31 3.51
697 1129 1.573932 CATTTTGCTCACGCCGACA 59.426 52.632 0.00 0.00 34.43 4.35
734 1195 3.788766 CCTTTCTTCGCGCCACCG 61.789 66.667 0.00 0.00 37.57 4.94
750 1212 3.570559 CCACCGATGCGTTGTTAAAAAT 58.429 40.909 0.00 0.00 0.00 1.82
785 1264 8.191534 ACACTTCTACTGTTTTCTAGGTGTAT 57.808 34.615 0.00 0.00 33.37 2.29
843 1322 7.171630 AGACACTTGTACTATTTCCTAGGTG 57.828 40.000 9.08 0.00 0.00 4.00
846 1325 8.605325 ACACTTGTACTATTTCCTAGGTGTAT 57.395 34.615 9.08 3.66 30.68 2.29
888 1376 3.627577 ACAAAATCGTGCAGTGAAGACTT 59.372 39.130 0.00 0.00 0.00 3.01
978 1504 2.758737 CCCTAACCTCGCCGGAGT 60.759 66.667 5.05 0.00 38.70 3.85
979 1505 2.494918 CCTAACCTCGCCGGAGTG 59.505 66.667 5.05 1.85 38.70 3.51
1078 1630 1.511305 CCTTCCGCTGTCGCTAAGA 59.489 57.895 0.00 0.00 32.42 2.10
1522 2074 3.704100 TGCTACAAGTGCAGCTTCA 57.296 47.368 5.18 0.00 38.63 3.02
1570 5173 4.030452 GCTGCTCACCGTGTTGCC 62.030 66.667 13.64 0.68 0.00 4.52
1579 5182 1.078497 CCGTGTTGCCCTGATGCTA 60.078 57.895 0.00 0.00 0.00 3.49
1582 5185 1.134818 CGTGTTGCCCTGATGCTACTA 60.135 52.381 0.00 0.00 37.76 1.82
1589 5192 3.455910 TGCCCTGATGCTACTATTTCTGT 59.544 43.478 0.00 0.00 0.00 3.41
1642 5258 5.429130 GGTGAGGTAGAAAGTTCCATTAGG 58.571 45.833 0.00 0.00 0.00 2.69
1688 5309 4.783764 TTCGAGCAAGTGAAGTGAGATA 57.216 40.909 0.00 0.00 0.00 1.98
1696 5317 9.920133 GAGCAAGTGAAGTGAGATATGATAATA 57.080 33.333 0.00 0.00 0.00 0.98
1833 5576 4.038522 ACAAGAGATATGATGGACAGACGG 59.961 45.833 0.00 0.00 0.00 4.79
1857 5600 0.906775 GGACCGTTGAATCTGGGGTA 59.093 55.000 0.00 0.00 0.00 3.69
1880 5623 2.330440 TTGTGCTCTCTGTCAAAGCA 57.670 45.000 0.00 0.00 43.40 3.91
1882 5625 1.139654 TGTGCTCTCTGTCAAAGCAGT 59.860 47.619 4.85 0.00 45.99 4.40
1962 5705 3.008266 AGAAAAATCAACAGCCAATGGGG 59.992 43.478 0.00 0.00 40.85 4.96
1986 5729 4.020751 TGCAGGCTCAGATATTATGACTCC 60.021 45.833 0.00 0.00 0.00 3.85
2025 5768 2.564721 GCTTCAGCGGCCCTTGTTT 61.565 57.895 0.00 0.00 0.00 2.83
2030 5773 1.978617 AGCGGCCCTTGTTTCATGG 60.979 57.895 0.00 0.00 0.00 3.66
2049 5792 1.450025 GAAATCGTTTCTTCGGCCCT 58.550 50.000 0.00 0.00 36.73 5.19
2090 5833 8.818622 TCAGAGGAATGATTTGATCTTTGAAT 57.181 30.769 0.00 0.00 0.00 2.57
2138 5881 3.755378 GCACAGAAGATTGGTCAATGACT 59.245 43.478 13.53 0.00 32.47 3.41
2226 5973 9.112725 GTTTCTTAAACCTTTGGTTGACTACTA 57.887 33.333 2.49 0.00 46.20 1.82
2234 5981 9.582648 AACCTTTGGTTGACTACTATTTATGTT 57.417 29.630 0.71 0.00 45.07 2.71
2235 5982 9.582648 ACCTTTGGTTGACTACTATTTATGTTT 57.417 29.630 0.00 0.00 27.29 2.83
2325 6072 9.862149 CCCCTATGTAAATATGTAAACTCCTTT 57.138 33.333 0.00 0.00 0.00 3.11
2462 7580 5.156355 AGCTTGTTTCACAAAATGCTATCG 58.844 37.500 1.22 0.00 37.69 2.92
2484 7602 5.353123 TCGTAACTATCCAAATGGTTGCTTC 59.647 40.000 0.00 0.00 37.00 3.86
2561 7683 8.445275 TGAATAAGACTCTTGCTTTTGTTACA 57.555 30.769 1.17 0.00 0.00 2.41
2572 7694 3.972502 GCTTTTGTTACAGCAGTTTACGG 59.027 43.478 0.00 0.00 35.95 4.02
2603 7725 4.770010 TCCTGTTGGGTTAATGAATTGGAC 59.230 41.667 0.00 0.00 36.25 4.02
2606 7728 3.835395 GTTGGGTTAATGAATTGGACCCA 59.165 43.478 19.94 19.94 46.50 4.51
2630 7752 7.153985 CACCTTCTTTTTCTTTCCAATGCATA 58.846 34.615 0.00 0.00 0.00 3.14
2645 7767 5.924254 CCAATGCATATGCTGGACTATTTTG 59.076 40.000 24.83 14.75 38.28 2.44
2669 7796 4.468153 GGGGGCCATTTAGTGTCAAAATAA 59.532 41.667 4.39 0.00 0.00 1.40
2792 9243 4.594970 TGTGGGAAGAACTTTGAAACAGA 58.405 39.130 0.00 0.00 0.00 3.41
2807 9258 9.950680 CTTTGAAACAGAAAGCTTTAGATGTAA 57.049 29.630 12.68 6.49 0.00 2.41
3059 9519 8.428852 ACTTTTCTTAATTTACTGGTTGCCATT 58.571 29.630 0.00 0.00 30.82 3.16
3063 9526 7.826690 TCTTAATTTACTGGTTGCCATTCTTC 58.173 34.615 0.00 0.00 30.82 2.87
3064 9527 7.669722 TCTTAATTTACTGGTTGCCATTCTTCT 59.330 33.333 0.00 0.00 30.82 2.85
3065 9528 6.670695 AATTTACTGGTTGCCATTCTTCTT 57.329 33.333 0.00 0.00 30.82 2.52
3066 9529 7.775053 AATTTACTGGTTGCCATTCTTCTTA 57.225 32.000 0.00 0.00 30.82 2.10
3088 9551 3.097614 AGACTATTAGTTGGTCAGGCGT 58.902 45.455 0.00 0.00 32.98 5.68
3104 9567 6.537660 GGTCAGGCGTAACACTCTTTTAATAT 59.462 38.462 0.00 0.00 0.00 1.28
3203 9676 6.688385 CACCAAGAATATGCACTACAATTTCG 59.312 38.462 0.00 0.00 31.73 3.46
3458 18146 0.178990 GTTCCCCTTGTTGACTGCCT 60.179 55.000 0.00 0.00 0.00 4.75
3765 18453 7.756722 CAGAATTCACATTACTCCATCCAAAAC 59.243 37.037 8.44 0.00 0.00 2.43
3805 18493 8.239998 CCTGAGGAAGAAGTTTCAAATTATGTC 58.760 37.037 0.00 0.00 0.00 3.06
3838 18526 9.713740 CATCATAAAAAGTATGCTTCTGACTTC 57.286 33.333 0.00 0.00 32.27 3.01
3866 18554 5.522824 AGAGTTACTTTTGTTGACGAAGACC 59.477 40.000 0.00 0.00 0.00 3.85
4056 20695 4.709397 TGGAAGTTCTGTTTGGATGTTTGT 59.291 37.500 2.25 0.00 0.00 2.83
4093 20732 5.220710 TGAAGGCTGAGGATATAAGAAGC 57.779 43.478 0.00 0.00 0.00 3.86
4311 20951 3.016736 AGATGTGGCTTACGAAATTGGG 58.983 45.455 0.00 0.00 0.00 4.12
4366 21012 7.122715 TCAAATAAGGTATGGTGGCTACAAAT 58.877 34.615 1.52 0.00 0.00 2.32
4461 21107 7.865385 TCAAAGAGCACAATGTTTAACATTACC 59.135 33.333 20.94 12.74 46.22 2.85
4483 21129 2.991540 GGAGCAAACCCCAGCCAC 60.992 66.667 0.00 0.00 0.00 5.01
4533 21179 2.683362 CCTTTCGACTTTGGGGATAAGC 59.317 50.000 0.00 0.00 0.00 3.09
4982 21774 2.419713 CCATCCTGGTGACATCAGAGTG 60.420 54.545 17.61 13.84 41.51 3.51
5096 21894 5.696724 ACTGAAACTGAAAGACGACCTATTG 59.303 40.000 0.00 0.00 37.43 1.90
5105 21903 2.685897 AGACGACCTATTGAGCTCTGTC 59.314 50.000 16.19 11.93 0.00 3.51
5238 22036 3.676093 CAGAAAGACTGTAAGGGAACCC 58.324 50.000 0.94 0.94 45.84 4.11
5239 22037 3.559384 CAGAAAGACTGTAAGGGAACCCC 60.559 52.174 6.23 0.00 45.84 4.95
5241 22039 6.517826 CAGAAAGACTGTAAGGGAACCCCTA 61.518 48.000 4.76 0.00 46.34 3.53
5242 22040 7.773367 CAGAAAGACTGTAAGGGAACCCCTAT 61.773 46.154 4.76 0.00 46.34 2.57
5243 22041 8.515861 CAGAAAGACTGTAAGGGAACCCCTATA 61.516 44.444 4.76 0.00 46.34 1.31
5256 22054 6.802608 GGAACCCCTATAGTTTAATTTGTGC 58.197 40.000 0.00 0.00 0.00 4.57
5257 22055 6.378848 GGAACCCCTATAGTTTAATTTGTGCA 59.621 38.462 0.00 0.00 0.00 4.57
5258 22056 7.093684 GGAACCCCTATAGTTTAATTTGTGCAA 60.094 37.037 0.00 0.00 0.00 4.08
5259 22057 7.165460 ACCCCTATAGTTTAATTTGTGCAAC 57.835 36.000 0.00 0.00 37.35 4.17
5272 22070 2.753989 GTGCAACAAACCCAAATTGC 57.246 45.000 0.00 0.94 46.08 3.56
5275 22073 3.337301 GCAACAAACCCAAATTGCAAG 57.663 42.857 4.94 0.00 45.38 4.01
5276 22074 2.682352 GCAACAAACCCAAATTGCAAGT 59.318 40.909 4.94 0.00 45.38 3.16
5277 22075 3.873952 GCAACAAACCCAAATTGCAAGTA 59.126 39.130 4.94 0.00 45.38 2.24
5278 22076 4.260579 GCAACAAACCCAAATTGCAAGTAC 60.261 41.667 4.94 0.00 45.38 2.73
5279 22077 4.066646 ACAAACCCAAATTGCAAGTACC 57.933 40.909 4.94 0.00 0.00 3.34
5280 22078 3.452627 ACAAACCCAAATTGCAAGTACCA 59.547 39.130 4.94 0.00 0.00 3.25
5281 22079 4.102367 ACAAACCCAAATTGCAAGTACCAT 59.898 37.500 4.94 0.00 0.00 3.55
5282 22080 3.959535 ACCCAAATTGCAAGTACCATG 57.040 42.857 4.94 0.00 0.00 3.66
5283 22081 2.028203 ACCCAAATTGCAAGTACCATGC 60.028 45.455 4.94 12.96 44.08 4.06
5284 22082 2.620242 CCAAATTGCAAGTACCATGCC 58.380 47.619 16.17 2.49 43.16 4.40
5285 22083 2.234414 CCAAATTGCAAGTACCATGCCT 59.766 45.455 16.17 3.91 43.16 4.75
5286 22084 3.306919 CCAAATTGCAAGTACCATGCCTT 60.307 43.478 16.17 8.78 43.16 4.35
5287 22085 3.598019 AATTGCAAGTACCATGCCTTG 57.402 42.857 16.17 11.51 43.16 3.61
5288 22086 2.284754 TTGCAAGTACCATGCCTTGA 57.715 45.000 16.17 0.00 43.16 3.02
5289 22087 2.284754 TGCAAGTACCATGCCTTGAA 57.715 45.000 16.17 7.93 43.16 2.69
5290 22088 1.885887 TGCAAGTACCATGCCTTGAAC 59.114 47.619 16.17 5.82 43.16 3.18
5291 22089 1.202348 GCAAGTACCATGCCTTGAACC 59.798 52.381 17.22 2.20 40.36 3.62
5292 22090 2.795329 CAAGTACCATGCCTTGAACCT 58.205 47.619 10.72 0.00 40.36 3.50
5293 22091 2.489329 CAAGTACCATGCCTTGAACCTG 59.511 50.000 10.72 0.00 40.36 4.00
5294 22092 1.004745 AGTACCATGCCTTGAACCTGG 59.995 52.381 0.00 0.00 0.00 4.45
5295 22093 0.331278 TACCATGCCTTGAACCTGGG 59.669 55.000 0.00 0.00 0.00 4.45
5296 22094 1.077265 CCATGCCTTGAACCTGGGT 59.923 57.895 0.00 0.00 0.00 4.51
5297 22095 1.252904 CCATGCCTTGAACCTGGGTG 61.253 60.000 0.00 0.00 0.00 4.61
5298 22096 1.077265 ATGCCTTGAACCTGGGTGG 59.923 57.895 0.00 0.00 42.93 4.61
5299 22097 2.283173 GCCTTGAACCTGGGTGGG 60.283 66.667 0.00 0.00 41.11 4.61
5300 22098 3.146828 GCCTTGAACCTGGGTGGGT 62.147 63.158 0.00 0.00 42.05 4.51
5301 22099 1.228552 CCTTGAACCTGGGTGGGTG 60.229 63.158 0.00 0.00 39.85 4.61
5302 22100 1.228552 CTTGAACCTGGGTGGGTGG 60.229 63.158 0.00 0.00 39.85 4.61
5303 22101 2.713531 CTTGAACCTGGGTGGGTGGG 62.714 65.000 0.00 0.00 39.85 4.61
5304 22102 2.856988 GAACCTGGGTGGGTGGGA 60.857 66.667 0.00 0.00 39.85 4.37
5305 22103 2.370403 AACCTGGGTGGGTGGGAA 60.370 61.111 0.00 0.00 39.85 3.97
5306 22104 2.426305 GAACCTGGGTGGGTGGGAAG 62.426 65.000 0.00 0.00 39.85 3.46
5307 22105 3.661648 CCTGGGTGGGTGGGAAGG 61.662 72.222 0.00 0.00 0.00 3.46
5308 22106 4.366684 CTGGGTGGGTGGGAAGGC 62.367 72.222 0.00 0.00 0.00 4.35
5310 22108 3.672503 GGGTGGGTGGGAAGGCAT 61.673 66.667 0.00 0.00 0.00 4.40
5311 22109 2.043953 GGTGGGTGGGAAGGCATC 60.044 66.667 0.00 0.00 0.00 3.91
5312 22110 2.763215 GTGGGTGGGAAGGCATCA 59.237 61.111 0.00 0.00 0.00 3.07
5313 22111 1.379044 GTGGGTGGGAAGGCATCAG 60.379 63.158 0.00 0.00 0.00 2.90
5314 22112 2.440980 GGGTGGGAAGGCATCAGC 60.441 66.667 0.00 0.00 41.10 4.26
5324 22122 2.440980 GCATCAGCCCCTTCCCAC 60.441 66.667 0.00 0.00 33.58 4.61
5325 22123 2.276740 CATCAGCCCCTTCCCACC 59.723 66.667 0.00 0.00 0.00 4.61
5326 22124 2.204291 ATCAGCCCCTTCCCACCA 60.204 61.111 0.00 0.00 0.00 4.17
5327 22125 2.616458 ATCAGCCCCTTCCCACCAC 61.616 63.158 0.00 0.00 0.00 4.16
5328 22126 3.260100 CAGCCCCTTCCCACCACT 61.260 66.667 0.00 0.00 0.00 4.00
5329 22127 1.923395 CAGCCCCTTCCCACCACTA 60.923 63.158 0.00 0.00 0.00 2.74
5330 22128 1.616628 AGCCCCTTCCCACCACTAG 60.617 63.158 0.00 0.00 0.00 2.57
5331 22129 2.680370 GCCCCTTCCCACCACTAGG 61.680 68.421 0.00 0.00 42.21 3.02
5332 22130 2.680370 CCCCTTCCCACCACTAGGC 61.680 68.421 0.00 0.00 39.06 3.93
5333 22131 1.616628 CCCTTCCCACCACTAGGCT 60.617 63.158 0.00 0.00 39.06 4.58
5334 22132 0.326238 CCCTTCCCACCACTAGGCTA 60.326 60.000 0.00 0.00 39.06 3.93
5335 22133 1.695989 CCCTTCCCACCACTAGGCTAT 60.696 57.143 0.00 0.00 39.06 2.97
5336 22134 1.417890 CCTTCCCACCACTAGGCTATG 59.582 57.143 0.00 0.00 39.06 2.23
5337 22135 0.837272 TTCCCACCACTAGGCTATGC 59.163 55.000 0.00 0.00 39.06 3.14
5349 22147 1.876322 GGCTATGCCTTAGTCTGCAG 58.124 55.000 7.63 7.63 46.69 4.41
5350 22148 1.139853 GGCTATGCCTTAGTCTGCAGT 59.860 52.381 14.67 0.00 46.69 4.40
5351 22149 2.420687 GGCTATGCCTTAGTCTGCAGTT 60.421 50.000 14.67 6.17 46.69 3.16
5352 22150 3.274288 GCTATGCCTTAGTCTGCAGTTT 58.726 45.455 14.67 5.78 41.46 2.66
5353 22151 3.691609 GCTATGCCTTAGTCTGCAGTTTT 59.308 43.478 14.67 3.14 41.46 2.43
5486 22286 4.631131 TCTACCTATTGATGGATGTTGCG 58.369 43.478 0.00 0.00 0.00 4.85
5499 22299 3.989817 GGATGTTGCGAATCTTTGCTTTT 59.010 39.130 3.93 0.00 38.42 2.27
5707 22507 3.501828 GCCACGCATAATGGATCATGTTA 59.498 43.478 0.00 0.00 39.87 2.41
5727 22527 7.818997 TGTTATCACACTCGAGGTATATTCT 57.181 36.000 18.41 0.00 0.00 2.40
5770 22570 4.673968 TCTCTCTTCCTAGGTTGTTGCTA 58.326 43.478 9.08 0.00 0.00 3.49
5920 27486 9.248291 TCTTTCTAAAACATTTCTTTGCATGAC 57.752 29.630 0.00 0.00 0.00 3.06
6013 27580 1.680338 AGTGTCAAACTCAACCAGGC 58.320 50.000 0.00 0.00 31.64 4.85
6081 27688 2.121786 GCTCGCCATGCACAATTAATG 58.878 47.619 0.00 0.00 0.00 1.90
6154 27762 4.890158 TGCTGTCCTCTAATGAGAACAA 57.110 40.909 0.00 0.00 37.12 2.83
6166 27811 4.959596 ATGAGAACAACTGTGCATGATC 57.040 40.909 0.00 0.00 0.00 2.92
6167 27812 4.011966 TGAGAACAACTGTGCATGATCT 57.988 40.909 0.00 0.00 32.19 2.75
6168 27813 3.999001 TGAGAACAACTGTGCATGATCTC 59.001 43.478 14.90 14.90 42.51 2.75
6169 27814 4.252073 GAGAACAACTGTGCATGATCTCT 58.748 43.478 14.63 4.29 40.39 3.10
6170 27815 5.047092 TGAGAACAACTGTGCATGATCTCTA 60.047 40.000 19.72 8.87 42.59 2.43
6171 27816 5.174395 AGAACAACTGTGCATGATCTCTAC 58.826 41.667 0.00 0.00 0.00 2.59
6172 27817 4.815533 ACAACTGTGCATGATCTCTACT 57.184 40.909 0.00 0.00 0.00 2.57
6173 27818 4.753233 ACAACTGTGCATGATCTCTACTC 58.247 43.478 0.00 0.00 0.00 2.59
6174 27819 4.465660 ACAACTGTGCATGATCTCTACTCT 59.534 41.667 0.00 0.00 0.00 3.24
6175 27820 5.046735 ACAACTGTGCATGATCTCTACTCTT 60.047 40.000 0.00 0.00 0.00 2.85
6176 27821 6.153510 ACAACTGTGCATGATCTCTACTCTTA 59.846 38.462 0.00 0.00 0.00 2.10
6177 27822 6.975196 ACTGTGCATGATCTCTACTCTTAT 57.025 37.500 0.00 0.00 0.00 1.73
6178 27823 8.355913 CAACTGTGCATGATCTCTACTCTTATA 58.644 37.037 0.00 0.00 0.00 0.98
6179 27824 8.470657 ACTGTGCATGATCTCTACTCTTATAA 57.529 34.615 0.00 0.00 0.00 0.98
6180 27825 8.918116 ACTGTGCATGATCTCTACTCTTATAAA 58.082 33.333 0.00 0.00 0.00 1.40
6181 27826 9.755804 CTGTGCATGATCTCTACTCTTATAAAA 57.244 33.333 0.00 0.00 0.00 1.52
6201 27846 5.458041 AAAAACAGAGTTGGTGATGATGG 57.542 39.130 0.00 0.00 0.00 3.51
6202 27847 3.795688 AACAGAGTTGGTGATGATGGT 57.204 42.857 0.00 0.00 0.00 3.55
6203 27848 3.063510 ACAGAGTTGGTGATGATGGTG 57.936 47.619 0.00 0.00 0.00 4.17
6204 27849 2.373169 ACAGAGTTGGTGATGATGGTGT 59.627 45.455 0.00 0.00 0.00 4.16
6205 27850 2.745821 CAGAGTTGGTGATGATGGTGTG 59.254 50.000 0.00 0.00 0.00 3.82
6206 27851 1.470098 GAGTTGGTGATGATGGTGTGC 59.530 52.381 0.00 0.00 0.00 4.57
6207 27852 0.527565 GTTGGTGATGATGGTGTGCC 59.472 55.000 0.00 0.00 0.00 5.01
6208 27853 0.405198 TTGGTGATGATGGTGTGCCT 59.595 50.000 0.00 0.00 35.27 4.75
6209 27854 0.322726 TGGTGATGATGGTGTGCCTG 60.323 55.000 0.00 0.00 35.27 4.85
6210 27855 1.660560 GGTGATGATGGTGTGCCTGC 61.661 60.000 0.00 0.00 35.27 4.85
6211 27856 1.378911 TGATGATGGTGTGCCTGCC 60.379 57.895 0.00 0.00 35.27 4.85
6212 27857 1.378911 GATGATGGTGTGCCTGCCA 60.379 57.895 0.00 0.00 39.33 4.92
6215 27860 2.043652 ATGGTGTGCCTGCCATCC 60.044 61.111 0.00 0.00 41.24 3.51
6216 27861 2.619446 ATGGTGTGCCTGCCATCCT 61.619 57.895 0.00 0.00 41.24 3.24
6217 27862 2.753043 GGTGTGCCTGCCATCCTG 60.753 66.667 0.00 0.00 0.00 3.86
6218 27863 3.446570 GTGTGCCTGCCATCCTGC 61.447 66.667 0.00 0.00 0.00 4.85
6219 27864 3.969119 TGTGCCTGCCATCCTGCA 61.969 61.111 0.00 0.00 39.37 4.41
6220 27865 2.677524 GTGCCTGCCATCCTGCAA 60.678 61.111 0.00 0.00 41.51 4.08
6221 27866 2.677524 TGCCTGCCATCCTGCAAC 60.678 61.111 0.00 0.00 41.51 4.17
6222 27867 2.677524 GCCTGCCATCCTGCAACA 60.678 61.111 0.00 0.00 41.51 3.33
6223 27868 2.056223 GCCTGCCATCCTGCAACAT 61.056 57.895 0.00 0.00 41.51 2.71
6224 27869 0.752743 GCCTGCCATCCTGCAACATA 60.753 55.000 0.00 0.00 41.51 2.29
6225 27870 1.315690 CCTGCCATCCTGCAACATAG 58.684 55.000 0.00 0.00 41.51 2.23
6226 27871 1.315690 CTGCCATCCTGCAACATAGG 58.684 55.000 0.00 0.00 41.51 2.57
6227 27872 0.752743 TGCCATCCTGCAACATAGGC 60.753 55.000 9.23 9.23 38.56 3.93
6228 27873 1.458639 GCCATCCTGCAACATAGGCC 61.459 60.000 0.00 0.00 35.23 5.19
6229 27874 1.168407 CCATCCTGCAACATAGGCCG 61.168 60.000 0.00 0.00 35.23 6.13
6230 27875 0.464373 CATCCTGCAACATAGGCCGT 60.464 55.000 0.00 0.00 35.23 5.68
6231 27876 0.179045 ATCCTGCAACATAGGCCGTC 60.179 55.000 0.00 0.00 35.23 4.79
6232 27877 1.221840 CCTGCAACATAGGCCGTCT 59.778 57.895 0.00 0.00 0.00 4.18
6233 27878 1.091771 CCTGCAACATAGGCCGTCTG 61.092 60.000 0.00 0.00 0.00 3.51
6234 27879 0.108186 CTGCAACATAGGCCGTCTGA 60.108 55.000 8.92 0.00 0.00 3.27
6235 27880 0.541392 TGCAACATAGGCCGTCTGAT 59.459 50.000 8.92 0.00 0.00 2.90
6236 27881 1.065491 TGCAACATAGGCCGTCTGATT 60.065 47.619 8.92 0.00 0.00 2.57
6237 27882 2.017049 GCAACATAGGCCGTCTGATTT 58.983 47.619 8.92 0.00 0.00 2.17
6238 27883 3.202906 GCAACATAGGCCGTCTGATTTA 58.797 45.455 8.92 0.00 0.00 1.40
6239 27884 3.815401 GCAACATAGGCCGTCTGATTTAT 59.185 43.478 8.92 0.00 0.00 1.40
6240 27885 4.994852 GCAACATAGGCCGTCTGATTTATA 59.005 41.667 8.92 0.00 0.00 0.98
6241 27886 5.643777 GCAACATAGGCCGTCTGATTTATAT 59.356 40.000 8.92 0.00 0.00 0.86
6242 27887 6.183360 GCAACATAGGCCGTCTGATTTATATC 60.183 42.308 8.92 0.00 0.00 1.63
6243 27888 5.978814 ACATAGGCCGTCTGATTTATATCC 58.021 41.667 8.92 0.00 0.00 2.59
6244 27889 3.594603 AGGCCGTCTGATTTATATCCG 57.405 47.619 0.00 0.00 0.00 4.18
6245 27890 3.162666 AGGCCGTCTGATTTATATCCGA 58.837 45.455 0.00 0.00 0.00 4.55
6246 27891 3.056749 AGGCCGTCTGATTTATATCCGAC 60.057 47.826 0.00 7.39 39.96 4.79
6253 27898 6.496571 GTCTGATTTATATCCGACGGATAGG 58.503 44.000 33.40 19.37 46.25 2.57
6254 27899 6.318144 GTCTGATTTATATCCGACGGATAGGA 59.682 42.308 33.40 23.83 46.25 2.94
6255 27900 6.888088 TCTGATTTATATCCGACGGATAGGAA 59.112 38.462 33.40 28.72 46.25 3.36
6256 27901 7.067129 TCTGATTTATATCCGACGGATAGGAAG 59.933 40.741 33.40 24.24 46.25 3.46
6257 27902 5.909621 TTTATATCCGACGGATAGGAAGG 57.090 43.478 33.40 0.00 46.25 3.46
6258 27903 3.733883 ATATCCGACGGATAGGAAGGA 57.266 47.619 33.40 17.17 46.25 3.36
6259 27904 2.376695 ATCCGACGGATAGGAAGGAA 57.623 50.000 27.72 0.00 41.16 3.36
6260 27905 2.148446 TCCGACGGATAGGAAGGAAA 57.852 50.000 13.88 0.00 32.86 3.13
6261 27906 1.753073 TCCGACGGATAGGAAGGAAAC 59.247 52.381 13.88 0.00 32.86 2.78
6262 27907 3.944648 ATCCGACGGATAGGAAGGAAACT 60.945 47.826 27.72 0.00 41.16 2.66
6263 27908 2.954318 CCGACGGATAGGAAGGAAACTA 59.046 50.000 8.64 0.00 42.68 2.24
6264 27909 3.573110 CCGACGGATAGGAAGGAAACTAT 59.427 47.826 8.64 0.00 42.68 2.12
6265 27910 4.547532 CGACGGATAGGAAGGAAACTATG 58.452 47.826 0.00 0.00 42.68 2.23
6266 27911 4.558898 CGACGGATAGGAAGGAAACTATGG 60.559 50.000 0.00 0.00 42.68 2.74
6267 27912 4.296056 ACGGATAGGAAGGAAACTATGGT 58.704 43.478 0.00 0.00 42.68 3.55
6268 27913 5.461327 ACGGATAGGAAGGAAACTATGGTA 58.539 41.667 0.00 0.00 42.68 3.25
6269 27914 5.901276 ACGGATAGGAAGGAAACTATGGTAA 59.099 40.000 0.00 0.00 42.68 2.85
6270 27915 6.557633 ACGGATAGGAAGGAAACTATGGTAAT 59.442 38.462 0.00 0.00 42.68 1.89
6271 27916 7.072076 ACGGATAGGAAGGAAACTATGGTAATT 59.928 37.037 0.00 0.00 42.68 1.40
6272 27917 7.937394 CGGATAGGAAGGAAACTATGGTAATTT 59.063 37.037 0.00 0.00 42.68 1.82
6273 27918 9.642343 GGATAGGAAGGAAACTATGGTAATTTT 57.358 33.333 0.00 0.00 42.68 1.82
6275 27920 7.170393 AGGAAGGAAACTATGGTAATTTTGC 57.830 36.000 0.00 0.00 42.68 3.68
6276 27921 6.723977 AGGAAGGAAACTATGGTAATTTTGCA 59.276 34.615 0.00 0.00 42.68 4.08
6277 27922 7.234577 AGGAAGGAAACTATGGTAATTTTGCAA 59.765 33.333 0.00 0.00 42.68 4.08
6278 27923 7.875554 GGAAGGAAACTATGGTAATTTTGCAAA 59.124 33.333 8.05 8.05 42.68 3.68
6279 27924 9.267084 GAAGGAAACTATGGTAATTTTGCAAAA 57.733 29.630 25.76 25.76 42.68 2.44
6280 27925 9.620259 AAGGAAACTATGGTAATTTTGCAAAAA 57.380 25.926 27.10 11.87 42.68 1.94
6281 27926 9.271828 AGGAAACTATGGTAATTTTGCAAAAAG 57.728 29.630 27.10 19.40 40.61 2.27
6282 27927 9.267084 GGAAACTATGGTAATTTTGCAAAAAGA 57.733 29.630 27.10 15.55 0.00 2.52
6286 27931 9.869757 ACTATGGTAATTTTGCAAAAAGATACC 57.130 29.630 32.45 32.45 36.83 2.73
6287 27932 9.313118 CTATGGTAATTTTGCAAAAAGATACCC 57.687 33.333 33.84 25.17 36.21 3.69
6288 27933 7.067496 TGGTAATTTTGCAAAAAGATACCCA 57.933 32.000 33.84 26.55 36.21 4.51
6289 27934 6.931840 TGGTAATTTTGCAAAAAGATACCCAC 59.068 34.615 33.84 22.52 36.21 4.61
6290 27935 6.931840 GGTAATTTTGCAAAAAGATACCCACA 59.068 34.615 30.94 11.82 33.82 4.17
6291 27936 6.859420 AATTTTGCAAAAAGATACCCACAC 57.141 33.333 27.10 0.00 0.00 3.82
6292 27937 4.329462 TTTGCAAAAAGATACCCACACC 57.671 40.909 10.02 0.00 0.00 4.16
6293 27938 2.243810 TGCAAAAAGATACCCACACCC 58.756 47.619 0.00 0.00 0.00 4.61
6294 27939 1.548719 GCAAAAAGATACCCACACCCC 59.451 52.381 0.00 0.00 0.00 4.95
6295 27940 2.821625 GCAAAAAGATACCCACACCCCT 60.822 50.000 0.00 0.00 0.00 4.79
6296 27941 3.089284 CAAAAAGATACCCACACCCCTC 58.911 50.000 0.00 0.00 0.00 4.30
6297 27942 2.361085 AAAGATACCCACACCCCTCT 57.639 50.000 0.00 0.00 0.00 3.69
6298 27943 1.880941 AAGATACCCACACCCCTCTC 58.119 55.000 0.00 0.00 0.00 3.20
6299 27944 0.031010 AGATACCCACACCCCTCTCC 60.031 60.000 0.00 0.00 0.00 3.71
6300 27945 0.326238 GATACCCACACCCCTCTCCA 60.326 60.000 0.00 0.00 0.00 3.86
6301 27946 0.620700 ATACCCACACCCCTCTCCAC 60.621 60.000 0.00 0.00 0.00 4.02
6302 27947 2.038545 TACCCACACCCCTCTCCACA 62.039 60.000 0.00 0.00 0.00 4.17
6303 27948 1.925455 CCCACACCCCTCTCCACAT 60.925 63.158 0.00 0.00 0.00 3.21
6304 27949 1.500783 CCCACACCCCTCTCCACATT 61.501 60.000 0.00 0.00 0.00 2.71
6305 27950 0.405585 CCACACCCCTCTCCACATTT 59.594 55.000 0.00 0.00 0.00 2.32
6306 27951 1.538047 CACACCCCTCTCCACATTTG 58.462 55.000 0.00 0.00 0.00 2.32
6307 27952 0.251341 ACACCCCTCTCCACATTTGC 60.251 55.000 0.00 0.00 0.00 3.68
6308 27953 0.251297 CACCCCTCTCCACATTTGCA 60.251 55.000 0.00 0.00 0.00 4.08
6309 27954 0.482446 ACCCCTCTCCACATTTGCAA 59.518 50.000 0.00 0.00 0.00 4.08
6310 27955 1.133199 ACCCCTCTCCACATTTGCAAA 60.133 47.619 15.44 15.44 0.00 3.68
6311 27956 2.181975 CCCCTCTCCACATTTGCAAAT 58.818 47.619 18.99 18.99 0.00 2.32
6312 27957 3.245586 ACCCCTCTCCACATTTGCAAATA 60.246 43.478 23.69 8.18 0.00 1.40
6313 27958 3.768757 CCCCTCTCCACATTTGCAAATAA 59.231 43.478 23.69 9.41 0.00 1.40
6314 27959 4.142093 CCCCTCTCCACATTTGCAAATAAG 60.142 45.833 23.69 17.76 0.00 1.73
6315 27960 4.142093 CCCTCTCCACATTTGCAAATAAGG 60.142 45.833 23.69 24.65 0.00 2.69
6316 27961 4.427312 CTCTCCACATTTGCAAATAAGGC 58.573 43.478 23.69 0.00 0.00 4.35
6317 27962 3.195396 TCTCCACATTTGCAAATAAGGCC 59.805 43.478 23.69 0.00 0.00 5.19
6318 27963 3.172339 TCCACATTTGCAAATAAGGCCT 58.828 40.909 23.69 0.00 0.00 5.19
6319 27964 3.582208 TCCACATTTGCAAATAAGGCCTT 59.418 39.130 23.69 24.18 0.00 4.35
6320 27965 3.934579 CCACATTTGCAAATAAGGCCTTC 59.065 43.478 24.49 7.84 0.00 3.46
6321 27966 3.934579 CACATTTGCAAATAAGGCCTTCC 59.065 43.478 24.49 7.15 0.00 3.46
6322 27967 3.055167 ACATTTGCAAATAAGGCCTTCCC 60.055 43.478 24.49 7.52 0.00 3.97
6324 27969 2.143876 TGCAAATAAGGCCTTCCCTC 57.856 50.000 24.49 9.38 45.62 4.30
6325 27970 1.025041 GCAAATAAGGCCTTCCCTCG 58.975 55.000 24.49 9.34 45.62 4.63
6326 27971 1.682087 GCAAATAAGGCCTTCCCTCGT 60.682 52.381 24.49 0.00 45.62 4.18
6327 27972 2.723273 CAAATAAGGCCTTCCCTCGTT 58.277 47.619 24.49 5.37 45.62 3.85
6328 27973 2.683362 CAAATAAGGCCTTCCCTCGTTC 59.317 50.000 24.49 0.00 45.62 3.95
6329 27974 1.580059 ATAAGGCCTTCCCTCGTTCA 58.420 50.000 24.49 0.18 45.62 3.18
6330 27975 1.580059 TAAGGCCTTCCCTCGTTCAT 58.420 50.000 24.49 0.00 45.62 2.57
6331 27976 0.253327 AAGGCCTTCCCTCGTTCATC 59.747 55.000 13.78 0.00 45.62 2.92
6332 27977 1.153147 GGCCTTCCCTCGTTCATCC 60.153 63.158 0.00 0.00 0.00 3.51
6333 27978 1.627297 GGCCTTCCCTCGTTCATCCT 61.627 60.000 0.00 0.00 0.00 3.24
6334 27979 0.253327 GCCTTCCCTCGTTCATCCTT 59.747 55.000 0.00 0.00 0.00 3.36
6335 27980 1.340114 GCCTTCCCTCGTTCATCCTTT 60.340 52.381 0.00 0.00 0.00 3.11
6336 27981 2.880167 GCCTTCCCTCGTTCATCCTTTT 60.880 50.000 0.00 0.00 0.00 2.27
6337 27982 3.010420 CCTTCCCTCGTTCATCCTTTTC 58.990 50.000 0.00 0.00 0.00 2.29
6338 27983 3.307762 CCTTCCCTCGTTCATCCTTTTCT 60.308 47.826 0.00 0.00 0.00 2.52
6339 27984 3.611766 TCCCTCGTTCATCCTTTTCTC 57.388 47.619 0.00 0.00 0.00 2.87
6340 27985 2.236395 TCCCTCGTTCATCCTTTTCTCC 59.764 50.000 0.00 0.00 0.00 3.71
6341 27986 2.633488 CCTCGTTCATCCTTTTCTCCC 58.367 52.381 0.00 0.00 0.00 4.30
6342 27987 2.027192 CCTCGTTCATCCTTTTCTCCCA 60.027 50.000 0.00 0.00 0.00 4.37
6343 27988 3.003480 CTCGTTCATCCTTTTCTCCCAC 58.997 50.000 0.00 0.00 0.00 4.61
6344 27989 2.370519 TCGTTCATCCTTTTCTCCCACA 59.629 45.455 0.00 0.00 0.00 4.17
6345 27990 3.146066 CGTTCATCCTTTTCTCCCACAA 58.854 45.455 0.00 0.00 0.00 3.33
6346 27991 3.189287 CGTTCATCCTTTTCTCCCACAAG 59.811 47.826 0.00 0.00 0.00 3.16
6347 27992 4.398319 GTTCATCCTTTTCTCCCACAAGA 58.602 43.478 0.00 0.00 0.00 3.02
6348 27993 4.934797 TCATCCTTTTCTCCCACAAGAT 57.065 40.909 0.00 0.00 0.00 2.40
6349 27994 6.180472 GTTCATCCTTTTCTCCCACAAGATA 58.820 40.000 0.00 0.00 0.00 1.98
6350 27995 6.387192 TCATCCTTTTCTCCCACAAGATAA 57.613 37.500 0.00 0.00 0.00 1.75
6351 27996 6.789268 TCATCCTTTTCTCCCACAAGATAAA 58.211 36.000 0.00 0.00 0.00 1.40
6352 27997 6.659242 TCATCCTTTTCTCCCACAAGATAAAC 59.341 38.462 0.00 0.00 0.00 2.01
6353 27998 6.200878 TCCTTTTCTCCCACAAGATAAACT 57.799 37.500 0.00 0.00 0.00 2.66
6354 27999 7.324388 TCCTTTTCTCCCACAAGATAAACTA 57.676 36.000 0.00 0.00 0.00 2.24
6355 28000 7.166167 TCCTTTTCTCCCACAAGATAAACTAC 58.834 38.462 0.00 0.00 0.00 2.73
6356 28001 7.017254 TCCTTTTCTCCCACAAGATAAACTACT 59.983 37.037 0.00 0.00 0.00 2.57
6357 28002 7.334671 CCTTTTCTCCCACAAGATAAACTACTC 59.665 40.741 0.00 0.00 0.00 2.59
6358 28003 6.928348 TTCTCCCACAAGATAAACTACTCA 57.072 37.500 0.00 0.00 0.00 3.41
6359 28004 7.496346 TTCTCCCACAAGATAAACTACTCAT 57.504 36.000 0.00 0.00 0.00 2.90
6360 28005 8.603898 TTCTCCCACAAGATAAACTACTCATA 57.396 34.615 0.00 0.00 0.00 2.15
6361 28006 8.008513 TCTCCCACAAGATAAACTACTCATAC 57.991 38.462 0.00 0.00 0.00 2.39
6362 28007 7.618117 TCTCCCACAAGATAAACTACTCATACA 59.382 37.037 0.00 0.00 0.00 2.29
6363 28008 8.141298 TCCCACAAGATAAACTACTCATACAA 57.859 34.615 0.00 0.00 0.00 2.41
6364 28009 8.598916 TCCCACAAGATAAACTACTCATACAAA 58.401 33.333 0.00 0.00 0.00 2.83
6365 28010 9.396022 CCCACAAGATAAACTACTCATACAAAT 57.604 33.333 0.00 0.00 0.00 2.32
6367 28012 9.708222 CACAAGATAAACTACTCATACAAATGC 57.292 33.333 0.00 0.00 32.76 3.56
6368 28013 9.448438 ACAAGATAAACTACTCATACAAATGCA 57.552 29.630 0.00 0.00 32.76 3.96
6374 28019 8.565896 AAACTACTCATACAAATGCATCTTGA 57.434 30.769 20.96 10.81 32.76 3.02
6375 28020 8.743085 AACTACTCATACAAATGCATCTTGAT 57.257 30.769 20.96 11.48 32.76 2.57
6376 28021 8.151141 ACTACTCATACAAATGCATCTTGATG 57.849 34.615 20.96 18.39 32.76 3.07
6377 28022 7.772292 ACTACTCATACAAATGCATCTTGATGT 59.228 33.333 20.96 14.21 32.76 3.06
6378 28023 7.400599 ACTCATACAAATGCATCTTGATGTT 57.599 32.000 20.96 1.04 32.76 2.71
6379 28024 7.478322 ACTCATACAAATGCATCTTGATGTTC 58.522 34.615 20.96 0.00 32.76 3.18
6380 28025 6.798482 TCATACAAATGCATCTTGATGTTCC 58.202 36.000 20.96 0.00 32.76 3.62
6381 28026 4.100707 ACAAATGCATCTTGATGTTCCG 57.899 40.909 20.96 1.56 0.00 4.30
6382 28027 3.507233 ACAAATGCATCTTGATGTTCCGT 59.493 39.130 20.96 2.07 0.00 4.69
6383 28028 3.770263 AATGCATCTTGATGTTCCGTG 57.230 42.857 0.00 0.00 0.00 4.94
6384 28029 0.804364 TGCATCTTGATGTTCCGTGC 59.196 50.000 11.61 0.00 0.00 5.34
6385 28030 0.804364 GCATCTTGATGTTCCGTGCA 59.196 50.000 11.61 0.00 0.00 4.57
6386 28031 1.199789 GCATCTTGATGTTCCGTGCAA 59.800 47.619 11.61 0.00 0.00 4.08
6387 28032 2.855180 CATCTTGATGTTCCGTGCAAC 58.145 47.619 0.00 0.00 0.00 4.17
6398 28043 2.202650 GTGCAACGCATGGGCATC 60.203 61.111 10.10 0.00 41.91 3.91
6399 28044 2.361483 TGCAACGCATGGGCATCT 60.361 55.556 10.10 0.00 41.24 2.90
6400 28045 1.978080 TGCAACGCATGGGCATCTT 60.978 52.632 10.10 0.00 41.24 2.40
6401 28046 1.517694 GCAACGCATGGGCATCTTG 60.518 57.895 10.10 7.97 41.24 3.02
6402 28047 1.517694 CAACGCATGGGCATCTTGC 60.518 57.895 10.10 6.97 44.08 4.01
6403 28048 1.679977 AACGCATGGGCATCTTGCT 60.680 52.632 10.10 0.00 44.28 3.91
6404 28049 0.394216 AACGCATGGGCATCTTGCTA 60.394 50.000 10.10 0.00 44.28 3.49
6405 28050 0.816825 ACGCATGGGCATCTTGCTAG 60.817 55.000 10.10 0.00 44.28 3.42
6406 28051 0.816825 CGCATGGGCATCTTGCTAGT 60.817 55.000 0.00 0.00 44.28 2.57
6407 28052 1.396653 GCATGGGCATCTTGCTAGTT 58.603 50.000 0.00 0.00 44.28 2.24
6421 28067 9.173939 CATCTTGCTAGTTTGAGTTTTAAAGTG 57.826 33.333 0.00 0.00 0.00 3.16
6422 28068 7.703328 TCTTGCTAGTTTGAGTTTTAAAGTGG 58.297 34.615 0.00 0.00 0.00 4.00
6423 28069 7.338449 TCTTGCTAGTTTGAGTTTTAAAGTGGT 59.662 33.333 0.00 0.00 0.00 4.16
6424 28070 7.023197 TGCTAGTTTGAGTTTTAAAGTGGTC 57.977 36.000 0.00 0.00 0.00 4.02
6425 28071 6.826741 TGCTAGTTTGAGTTTTAAAGTGGTCT 59.173 34.615 0.00 0.00 0.00 3.85
6426 28072 7.338449 TGCTAGTTTGAGTTTTAAAGTGGTCTT 59.662 33.333 0.00 0.00 35.14 3.01
6427 28073 7.644157 GCTAGTTTGAGTTTTAAAGTGGTCTTG 59.356 37.037 0.00 0.00 33.79 3.02
6494 28160 0.108281 GGTTCGCAACTACTCCCTCC 60.108 60.000 0.00 0.00 0.00 4.30
6497 28163 1.139095 CGCAACTACTCCCTCCGTC 59.861 63.158 0.00 0.00 0.00 4.79
6499 28165 1.807886 CAACTACTCCCTCCGTCCG 59.192 63.158 0.00 0.00 0.00 4.79
6500 28166 1.379576 AACTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
6504 28170 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
6505 28171 1.218316 CTCCCTCCGTCCGGAAAAG 59.782 63.158 5.23 3.59 44.66 2.27
6507 28173 2.663196 CCTCCGTCCGGAAAAGCT 59.337 61.111 5.23 0.00 44.66 3.74
6510 28176 0.602905 CTCCGTCCGGAAAAGCTTGT 60.603 55.000 5.23 0.00 44.66 3.16
6512 28178 1.574702 CCGTCCGGAAAAGCTTGTCC 61.575 60.000 24.00 24.00 37.50 4.02
6513 28179 1.574702 CGTCCGGAAAAGCTTGTCCC 61.575 60.000 26.94 13.97 0.00 4.46
6515 28181 0.036306 TCCGGAAAAGCTTGTCCCTC 59.964 55.000 26.94 5.77 0.00 4.30
6516 28182 0.250727 CCGGAAAAGCTTGTCCCTCA 60.251 55.000 26.94 0.00 0.00 3.86
6517 28183 1.604604 CGGAAAAGCTTGTCCCTCAA 58.395 50.000 26.94 0.00 34.61 3.02
6518 28184 1.953686 CGGAAAAGCTTGTCCCTCAAA 59.046 47.619 26.94 0.00 35.48 2.69
6519 28185 2.558359 CGGAAAAGCTTGTCCCTCAAAT 59.442 45.455 26.94 0.00 35.48 2.32
6520 28186 3.612479 CGGAAAAGCTTGTCCCTCAAATG 60.612 47.826 26.94 9.69 35.48 2.32
6521 28187 3.306294 GGAAAAGCTTGTCCCTCAAATGG 60.306 47.826 23.49 0.00 35.48 3.16
6522 28188 2.978156 AAGCTTGTCCCTCAAATGGA 57.022 45.000 0.00 0.00 35.48 3.41
6523 28189 3.463048 AAGCTTGTCCCTCAAATGGAT 57.537 42.857 0.00 0.00 35.48 3.41
6524 28190 2.731572 AGCTTGTCCCTCAAATGGATG 58.268 47.619 0.00 0.00 35.48 3.51
6526 28192 3.266772 AGCTTGTCCCTCAAATGGATGTA 59.733 43.478 0.00 0.00 35.48 2.29
6527 28193 4.079558 AGCTTGTCCCTCAAATGGATGTAT 60.080 41.667 0.00 0.00 35.48 2.29
6528 28194 4.276926 GCTTGTCCCTCAAATGGATGTATC 59.723 45.833 0.00 0.00 35.48 2.24
6529 28195 5.688807 CTTGTCCCTCAAATGGATGTATCT 58.311 41.667 0.00 0.00 35.48 1.98
6530 28196 6.688922 GCTTGTCCCTCAAATGGATGTATCTA 60.689 42.308 0.00 0.00 35.48 1.98
6532 28198 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
6535 28201 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
6536 28202 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
6537 28203 6.000246 TCAAATGGATGTATCTAGCACCAA 58.000 37.500 0.00 0.00 0.00 3.67
6541 28298 4.290093 TGGATGTATCTAGCACCAACTCT 58.710 43.478 0.00 0.00 0.00 3.24
6577 28335 8.782144 ACGTTTATACCCGAAATCTTACAAAAA 58.218 29.630 0.00 0.00 0.00 1.94
6776 28537 2.033911 TCCAGCTGAAATGCCGCA 59.966 55.556 17.39 0.00 0.00 5.69
6825 28586 0.321564 TCATGGAACGCTGGGACAAG 60.322 55.000 0.00 0.00 38.70 3.16
7000 28764 1.171308 GGAGTGCTACGACCTGTACA 58.829 55.000 0.00 0.00 0.00 2.90
7296 29060 0.181350 GGAGCTTCCCGTGGATCATT 59.819 55.000 0.00 0.00 0.00 2.57
7343 29107 0.249155 TCGAATAACGGCGATGACCC 60.249 55.000 16.62 0.00 42.82 4.46
7344 29108 0.249322 CGAATAACGGCGATGACCCT 60.249 55.000 16.62 0.00 38.46 4.34
7345 29109 1.805120 CGAATAACGGCGATGACCCTT 60.805 52.381 16.62 0.00 38.46 3.95
7346 29110 2.285977 GAATAACGGCGATGACCCTTT 58.714 47.619 16.62 0.00 0.00 3.11
7349 29113 2.745884 CGGCGATGACCCTTTGCA 60.746 61.111 0.00 0.00 0.00 4.08
7350 29114 2.331893 CGGCGATGACCCTTTGCAA 61.332 57.895 0.00 0.00 0.00 4.08
7351 29115 1.861542 CGGCGATGACCCTTTGCAAA 61.862 55.000 12.14 12.14 0.00 3.68
7352 29116 0.109132 GGCGATGACCCTTTGCAAAG 60.109 55.000 28.69 28.69 35.79 2.77
7353 29117 0.598065 GCGATGACCCTTTGCAAAGT 59.402 50.000 31.67 19.13 34.20 2.66
7354 29118 1.401539 GCGATGACCCTTTGCAAAGTC 60.402 52.381 31.67 25.26 34.20 3.01
7355 29119 1.879380 CGATGACCCTTTGCAAAGTCA 59.121 47.619 31.67 29.06 34.20 3.41
7356 29120 2.489329 CGATGACCCTTTGCAAAGTCAT 59.511 45.455 31.45 31.45 35.62 3.06
7357 29121 3.057315 CGATGACCCTTTGCAAAGTCATT 60.057 43.478 31.47 21.71 34.09 2.57
7358 29122 4.559300 CGATGACCCTTTGCAAAGTCATTT 60.559 41.667 31.47 20.41 34.09 2.32
7359 29123 5.335583 CGATGACCCTTTGCAAAGTCATTTA 60.336 40.000 31.47 18.34 34.09 1.40
7360 29124 6.610075 ATGACCCTTTGCAAAGTCATTTAT 57.390 33.333 31.67 15.90 31.53 1.40
7361 29125 6.024552 TGACCCTTTGCAAAGTCATTTATC 57.975 37.500 31.67 19.25 34.20 1.75
7362 29126 5.774690 TGACCCTTTGCAAAGTCATTTATCT 59.225 36.000 31.67 8.05 34.20 1.98
7363 29127 6.029346 ACCCTTTGCAAAGTCATTTATCTG 57.971 37.500 31.67 15.62 34.20 2.90
7364 29128 5.539955 ACCCTTTGCAAAGTCATTTATCTGT 59.460 36.000 31.67 13.21 34.20 3.41
7365 29129 5.865552 CCCTTTGCAAAGTCATTTATCTGTG 59.134 40.000 31.67 15.01 34.20 3.66
7366 29130 5.865552 CCTTTGCAAAGTCATTTATCTGTGG 59.134 40.000 31.67 12.96 34.20 4.17
7367 29131 6.294675 CCTTTGCAAAGTCATTTATCTGTGGA 60.295 38.462 31.67 0.00 34.20 4.02
7368 29132 5.885230 TGCAAAGTCATTTATCTGTGGAG 57.115 39.130 0.00 0.00 0.00 3.86
7369 29133 5.559770 TGCAAAGTCATTTATCTGTGGAGA 58.440 37.500 0.00 0.00 0.00 3.71
7370 29134 6.003326 TGCAAAGTCATTTATCTGTGGAGAA 58.997 36.000 0.00 0.00 0.00 2.87
7371 29135 6.660521 TGCAAAGTCATTTATCTGTGGAGAAT 59.339 34.615 0.00 0.00 0.00 2.40
7372 29136 7.828717 TGCAAAGTCATTTATCTGTGGAGAATA 59.171 33.333 0.00 0.00 0.00 1.75
7373 29137 8.844244 GCAAAGTCATTTATCTGTGGAGAATAT 58.156 33.333 0.00 0.00 0.00 1.28
7377 29141 9.553064 AGTCATTTATCTGTGGAGAATATTCAC 57.447 33.333 17.56 11.03 0.00 3.18
7378 29142 9.553064 GTCATTTATCTGTGGAGAATATTCACT 57.447 33.333 17.56 0.00 33.04 3.41
7383 29147 9.868160 TTATCTGTGGAGAATATTCACTAGAGA 57.132 33.333 21.37 21.37 34.58 3.10
7384 29148 7.815840 TCTGTGGAGAATATTCACTAGAGAG 57.184 40.000 17.43 8.84 29.22 3.20
7385 29149 7.350382 TCTGTGGAGAATATTCACTAGAGAGT 58.650 38.462 17.43 0.00 35.80 3.24
7386 29150 7.500892 TCTGTGGAGAATATTCACTAGAGAGTC 59.499 40.741 17.43 5.00 31.73 3.36
7387 29151 6.547880 TGTGGAGAATATTCACTAGAGAGTCC 59.452 42.308 17.56 11.79 31.73 3.85
7388 29152 6.775629 GTGGAGAATATTCACTAGAGAGTCCT 59.224 42.308 17.56 0.00 31.73 3.85
7389 29153 6.775142 TGGAGAATATTCACTAGAGAGTCCTG 59.225 42.308 17.56 0.00 31.73 3.86
8161 29945 1.555477 AAATCCTTGTCGGCCGGGTA 61.555 55.000 27.83 9.23 0.00 3.69
8162 29946 1.968050 AATCCTTGTCGGCCGGGTAG 61.968 60.000 27.83 18.61 0.00 3.18
8163 29947 3.387947 CCTTGTCGGCCGGGTAGT 61.388 66.667 27.83 0.00 0.00 2.73
8165 29949 1.140375 CTTGTCGGCCGGGTAGTAC 59.860 63.158 27.83 15.70 0.00 2.73
8166 29950 1.597797 CTTGTCGGCCGGGTAGTACA 61.598 60.000 27.83 18.43 0.00 2.90
8167 29951 1.597797 TTGTCGGCCGGGTAGTACAG 61.598 60.000 27.83 0.00 0.00 2.74
8168 29952 3.142838 TCGGCCGGGTAGTACAGC 61.143 66.667 27.83 1.82 0.00 4.40
8170 29954 1.825191 CGGCCGGGTAGTACAGCTA 60.825 63.158 20.10 0.00 0.00 3.32
8178 29962 4.891566 AGTACAGCTACAGCACGC 57.108 55.556 3.70 0.00 45.16 5.34
8181 29965 0.460284 GTACAGCTACAGCACGCCAT 60.460 55.000 3.70 0.00 45.16 4.40
8182 29966 0.179111 TACAGCTACAGCACGCCATC 60.179 55.000 3.70 0.00 45.16 3.51
8183 29967 2.176273 CAGCTACAGCACGCCATCC 61.176 63.158 3.70 0.00 45.16 3.51
8184 29968 2.897350 GCTACAGCACGCCATCCC 60.897 66.667 0.00 0.00 41.59 3.85
8185 29969 2.203070 CTACAGCACGCCATCCCC 60.203 66.667 0.00 0.00 0.00 4.81
8186 29970 2.687200 TACAGCACGCCATCCCCT 60.687 61.111 0.00 0.00 0.00 4.79
8188 29972 2.252072 TACAGCACGCCATCCCCTTC 62.252 60.000 0.00 0.00 0.00 3.46
8189 29973 4.115199 AGCACGCCATCCCCTTCC 62.115 66.667 0.00 0.00 0.00 3.46
8347 30380 7.637519 CACAATACTTGTTGATTAGCTGATTCG 59.362 37.037 0.00 0.00 43.23 3.34
8352 30385 4.433615 TGTTGATTAGCTGATTCGGTCTC 58.566 43.478 0.00 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
107 108 6.628919 ACCATTACACACTACCAAAAAGAC 57.371 37.500 0.00 0.00 0.00 3.01
129 137 2.098117 GGCCATGCACTTCATAGTCAAC 59.902 50.000 0.00 0.00 33.19 3.18
163 171 2.437716 CCCGTTAAGCATGGCGGT 60.438 61.111 0.00 0.00 42.36 5.68
178 186 1.550524 GAAAACAATTGCTCCCCTCCC 59.449 52.381 5.05 0.00 0.00 4.30
179 187 1.550524 GGAAAACAATTGCTCCCCTCC 59.449 52.381 5.05 0.00 0.00 4.30
180 188 2.247358 TGGAAAACAATTGCTCCCCTC 58.753 47.619 15.59 2.09 0.00 4.30
181 189 2.368548 GTTGGAAAACAATTGCTCCCCT 59.631 45.455 15.59 0.00 41.95 4.79
182 190 2.368548 AGTTGGAAAACAATTGCTCCCC 59.631 45.455 15.59 9.12 41.95 4.81
203 211 8.006298 TGTCATTGAAAAGAGAAAGCCTTTAA 57.994 30.769 0.00 0.00 33.85 1.52
204 212 7.581213 TGTCATTGAAAAGAGAAAGCCTTTA 57.419 32.000 0.00 0.00 33.85 1.85
299 344 2.151202 GGAGCACTCCGTTGAAAATGA 58.849 47.619 0.00 0.00 40.36 2.57
317 362 5.353394 AGCTCCGTTAAGATTTACATGGA 57.647 39.130 0.00 0.00 0.00 3.41
330 375 6.870971 AAATCAAAACTACAAGCTCCGTTA 57.129 33.333 0.00 0.00 0.00 3.18
401 456 1.340114 GGAGTTTAGTCTTGCCCCCTG 60.340 57.143 0.00 0.00 0.00 4.45
406 461 2.038557 TGAGTGGGAGTTTAGTCTTGCC 59.961 50.000 0.00 0.00 0.00 4.52
448 503 1.107945 AAAGGTTGTCGTGGGTTTGG 58.892 50.000 0.00 0.00 0.00 3.28
457 512 7.169140 CCATTAAAAAGAGGAAAAAGGTTGTCG 59.831 37.037 0.00 0.00 0.00 4.35
458 513 7.985184 ACCATTAAAAAGAGGAAAAAGGTTGTC 59.015 33.333 0.00 0.00 0.00 3.18
465 520 9.685828 CGTTATCACCATTAAAAAGAGGAAAAA 57.314 29.630 0.00 0.00 0.00 1.94
472 527 5.106078 GGCACCGTTATCACCATTAAAAAGA 60.106 40.000 0.00 0.00 0.00 2.52
508 563 1.996786 GCAACGAGGGGCACATGATG 61.997 60.000 0.00 0.00 0.00 3.07
541 611 9.160576 CGTGACGACAATAAAGTTGAAAATAAA 57.839 29.630 0.00 0.00 0.00 1.40
544 614 5.623673 GCGTGACGACAATAAAGTTGAAAAT 59.376 36.000 10.10 0.00 0.00 1.82
549 619 2.720590 CGGCGTGACGACAATAAAGTTG 60.721 50.000 12.83 0.00 32.52 3.16
550 620 1.458064 CGGCGTGACGACAATAAAGTT 59.542 47.619 12.83 0.00 32.52 2.66
563 634 1.205179 TCTAATTTGTAGGCGGCGTGA 59.795 47.619 9.37 0.00 0.00 4.35
568 999 1.937899 CCCGTTCTAATTTGTAGGCGG 59.062 52.381 0.00 0.00 35.21 6.13
579 1010 1.345415 GACTTGGTCACCCCGTTCTAA 59.655 52.381 0.00 0.00 35.15 2.10
584 1015 0.250727 CATTGACTTGGTCACCCCGT 60.251 55.000 0.00 0.00 42.60 5.28
589 1020 2.353011 CCCATTGCATTGACTTGGTCAC 60.353 50.000 10.14 0.00 42.60 3.67
599 1030 4.724074 ACTGAATACACCCATTGCATTG 57.276 40.909 1.49 1.49 0.00 2.82
642 1073 2.747446 GAGGCAAGTTCGGCAAAGATTA 59.253 45.455 0.00 0.00 0.00 1.75
663 1094 6.085808 GCAAAATGCATAGGCGACTAGAGG 62.086 50.000 3.40 0.00 44.26 3.69
690 1122 3.564027 GCGGGAAGAATGTCGGCG 61.564 66.667 0.00 0.00 0.00 6.46
697 1129 1.745489 GAAGGCACGCGGGAAGAAT 60.745 57.895 15.48 0.00 0.00 2.40
820 1299 6.932947 ACACCTAGGAAATAGTACAAGTGTC 58.067 40.000 17.98 0.00 30.61 3.67
866 1354 3.206150 AGTCTTCACTGCACGATTTTGT 58.794 40.909 0.00 0.00 0.00 2.83
888 1376 7.654022 ATGTGTCTTCCTTTTGGTCTTTTTA 57.346 32.000 0.00 0.00 41.38 1.52
978 1504 4.299796 GGGCAGAGGGGTTTGGCA 62.300 66.667 0.58 0.00 41.23 4.92
1078 1630 4.438148 GAATCGAAGAAGGCTAGAAGCTT 58.562 43.478 0.00 0.00 43.58 3.74
1124 1676 2.716244 CGATCTCGCAGGCGTACT 59.284 61.111 13.83 0.00 40.74 2.73
1570 5173 9.935241 ATATAACACAGAAATAGTAGCATCAGG 57.065 33.333 0.00 0.00 0.00 3.86
1589 5192 6.288294 ACCGCAAGCTCTGAATAATATAACA 58.712 36.000 0.00 0.00 0.00 2.41
1599 5215 1.608025 CCTGTAACCGCAAGCTCTGAA 60.608 52.381 0.00 0.00 0.00 3.02
1606 5222 0.673644 CCTCACCCTGTAACCGCAAG 60.674 60.000 0.00 0.00 0.00 4.01
1642 5258 3.063861 TCATCTGTGACATGTAAATGCGC 59.936 43.478 0.00 0.00 0.00 6.09
1724 5398 6.094048 ACAACATGCATATCAAACCTACTGTC 59.906 38.462 0.00 0.00 0.00 3.51
1833 5576 1.133025 CCAGATTCAACGGTCCAATGC 59.867 52.381 0.00 0.00 0.00 3.56
1857 5600 4.098349 TGCTTTGACAGAGAGCACAATTTT 59.902 37.500 0.00 0.00 41.15 1.82
1880 5623 3.267291 TGCTCTCTAGACTCCCTAACACT 59.733 47.826 0.00 0.00 0.00 3.55
1882 5625 4.167113 AGATGCTCTCTAGACTCCCTAACA 59.833 45.833 0.00 0.00 30.26 2.41
1962 5705 4.892433 AGTCATAATATCTGAGCCTGCAC 58.108 43.478 0.00 0.00 0.00 4.57
1966 5709 5.022227 AGGGAGTCATAATATCTGAGCCT 57.978 43.478 0.00 0.00 0.00 4.58
1986 5729 2.648059 CATCCCTTGCAGACCTAAAGG 58.352 52.381 0.00 0.00 40.21 3.11
2025 5768 2.418628 GCCGAAGAAACGATTTCCATGA 59.581 45.455 0.00 0.00 40.54 3.07
2030 5773 1.450025 AGGGCCGAAGAAACGATTTC 58.550 50.000 0.00 0.00 39.96 2.17
2049 5792 6.325993 TCCTCTGATTCCAAATGTTCCATA 57.674 37.500 0.00 0.00 0.00 2.74
2058 5801 7.837689 AGATCAAATCATTCCTCTGATTCCAAA 59.162 33.333 0.00 0.00 43.37 3.28
2060 5803 6.907961 AGATCAAATCATTCCTCTGATTCCA 58.092 36.000 0.00 0.00 43.37 3.53
2065 5808 8.818622 ATTCAAAGATCAAATCATTCCTCTGA 57.181 30.769 0.00 0.00 0.00 3.27
2138 5881 5.450818 ACCCTATAAGCAATGAGGTTCAA 57.549 39.130 0.00 0.00 39.08 2.69
2234 5981 7.913821 GCGAAACTAAAAGAAGGAGAAAAAGAA 59.086 33.333 0.00 0.00 0.00 2.52
2235 5982 7.282450 AGCGAAACTAAAAGAAGGAGAAAAAGA 59.718 33.333 0.00 0.00 0.00 2.52
2236 5983 7.418408 AGCGAAACTAAAAGAAGGAGAAAAAG 58.582 34.615 0.00 0.00 0.00 2.27
2237 5984 7.329588 AGCGAAACTAAAAGAAGGAGAAAAA 57.670 32.000 0.00 0.00 0.00 1.94
2238 5985 6.937436 AGCGAAACTAAAAGAAGGAGAAAA 57.063 33.333 0.00 0.00 0.00 2.29
2239 5986 6.766467 AGAAGCGAAACTAAAAGAAGGAGAAA 59.234 34.615 0.00 0.00 0.00 2.52
2240 5987 6.289064 AGAAGCGAAACTAAAAGAAGGAGAA 58.711 36.000 0.00 0.00 0.00 2.87
2241 5988 5.855045 AGAAGCGAAACTAAAAGAAGGAGA 58.145 37.500 0.00 0.00 0.00 3.71
2242 5989 5.929415 AGAGAAGCGAAACTAAAAGAAGGAG 59.071 40.000 0.00 0.00 0.00 3.69
2243 5990 5.855045 AGAGAAGCGAAACTAAAAGAAGGA 58.145 37.500 0.00 0.00 0.00 3.36
2244 5991 5.929415 AGAGAGAAGCGAAACTAAAAGAAGG 59.071 40.000 0.00 0.00 0.00 3.46
2245 5992 7.414814 AAGAGAGAAGCGAAACTAAAAGAAG 57.585 36.000 0.00 0.00 0.00 2.85
2258 6005 5.665381 AACAGAAGAAAAAGAGAGAAGCG 57.335 39.130 0.00 0.00 0.00 4.68
2347 6094 4.577693 GGAATCCCCTACGGTGTAATTTTC 59.422 45.833 0.00 0.00 0.00 2.29
2369 6116 0.325602 TTACGGGCAAACAGTAGGGG 59.674 55.000 0.00 0.00 31.42 4.79
2423 6173 8.637986 TGAAACAAGCTTTGTATATTCAGGTTT 58.362 29.630 0.00 0.00 44.59 3.27
2462 7580 6.759497 AGAAGCAACCATTTGGATAGTTAC 57.241 37.500 3.01 0.00 38.94 2.50
2560 7682 4.023193 AGGACAAAATTCCGTAAACTGCTG 60.023 41.667 0.00 0.00 41.04 4.41
2561 7683 4.023193 CAGGACAAAATTCCGTAAACTGCT 60.023 41.667 0.00 0.00 41.04 4.24
2572 7694 6.754193 TCATTAACCCAACAGGACAAAATTC 58.246 36.000 0.00 0.00 39.89 2.17
2603 7725 5.299949 CATTGGAAAGAAAAAGAAGGTGGG 58.700 41.667 0.00 0.00 0.00 4.61
2606 7728 5.612725 TGCATTGGAAAGAAAAAGAAGGT 57.387 34.783 0.00 0.00 0.00 3.50
2630 7752 2.459555 CCCCCAAAATAGTCCAGCAT 57.540 50.000 0.00 0.00 0.00 3.79
2792 9243 6.974795 AGGGAGGATTTACATCTAAAGCTTT 58.025 36.000 17.30 17.30 30.35 3.51
2807 9258 6.465035 GCTCATGTAAGTATCAAGGGAGGATT 60.465 42.308 0.00 0.00 0.00 3.01
2808 9259 5.012561 GCTCATGTAAGTATCAAGGGAGGAT 59.987 44.000 0.00 0.00 0.00 3.24
3051 9511 9.384764 ACTAATAGTCTTAAGAAGAATGGCAAC 57.615 33.333 6.78 0.00 39.67 4.17
3059 9519 8.750298 CCTGACCAACTAATAGTCTTAAGAAGA 58.250 37.037 6.78 0.00 34.51 2.87
3063 9526 5.749109 CGCCTGACCAACTAATAGTCTTAAG 59.251 44.000 0.00 0.00 0.00 1.85
3064 9527 5.186409 ACGCCTGACCAACTAATAGTCTTAA 59.814 40.000 0.00 0.00 0.00 1.85
3065 9528 4.708421 ACGCCTGACCAACTAATAGTCTTA 59.292 41.667 0.00 0.00 0.00 2.10
3066 9529 3.514309 ACGCCTGACCAACTAATAGTCTT 59.486 43.478 0.00 0.00 0.00 3.01
3203 9676 1.478105 CTTGAATAAACTGCAGGCCCC 59.522 52.381 19.93 2.52 0.00 5.80
3458 18146 3.627395 AAGACACTGAACAACCAGTCA 57.373 42.857 0.00 0.00 44.87 3.41
3612 18300 9.595823 GGTTCATAGCATGTAAACTCTAACTTA 57.404 33.333 0.00 0.00 0.00 2.24
3662 18350 1.270252 GCTCCTCTTCCTGCTATGAGC 60.270 57.143 0.00 0.00 42.82 4.26
3765 18453 1.134280 CCTCAGGTCCCAAGCAGTATG 60.134 57.143 0.00 0.00 40.87 2.39
3838 18526 4.678287 TCGTCAACAAAAGTAACTCTAGCG 59.322 41.667 0.00 0.00 0.00 4.26
3866 18554 4.455877 AGCATCTGGAAAAAGTTTACTCCG 59.544 41.667 10.56 6.98 0.00 4.63
4056 20695 5.044919 TCAGCCTTCAGGGAATCATTAGAAA 60.045 40.000 0.00 0.00 37.23 2.52
4154 20793 1.649321 TTGTCTGGAGGAGCTGACAT 58.351 50.000 0.00 0.00 38.89 3.06
4311 20951 3.179685 AGGAGGGTTTGTAGGGTCTAAC 58.820 50.000 0.00 0.00 0.00 2.34
4323 20963 3.312736 TGAAAAGCTGAAGGAGGGTTT 57.687 42.857 0.00 0.00 35.14 3.27
4366 21012 0.531974 GGGTCGACAGCAACAACTCA 60.532 55.000 18.91 0.00 0.00 3.41
4461 21107 1.809567 GCTGGGGTTTGCTCCAACTG 61.810 60.000 0.00 0.00 46.30 3.16
4483 21129 9.295214 AGAGATAATTTCACGATTCATATAGCG 57.705 33.333 0.00 0.00 0.00 4.26
4533 21179 6.535274 TGCATCAACTCAAATATCTCATCG 57.465 37.500 0.00 0.00 0.00 3.84
4982 21774 2.977914 TGGTCATAGACAGCTTCAAGC 58.022 47.619 0.00 0.00 42.84 4.01
5096 21894 2.008329 CTGAAGGCATTGACAGAGCTC 58.992 52.381 5.27 5.27 32.90 4.09
5105 21903 1.065636 TGAGCTCCTCTGAAGGCATTG 60.066 52.381 12.15 0.00 43.02 2.82
5145 21943 3.120321 ACATGGAAACTAACGCTGACA 57.880 42.857 0.00 0.00 0.00 3.58
5215 22013 7.771544 GGGGTTCCCTTACAGTCTTTCTGTC 62.772 52.000 7.87 0.00 46.24 3.51
5217 22015 3.559384 GGGGTTCCCTTACAGTCTTTCTG 60.559 52.174 7.87 0.00 44.11 3.02
5218 22016 2.643304 GGGGTTCCCTTACAGTCTTTCT 59.357 50.000 7.87 0.00 41.34 2.52
5219 22017 3.069079 GGGGTTCCCTTACAGTCTTTC 57.931 52.381 7.87 0.00 41.34 2.62
5231 22029 6.183360 GCACAAATTAAACTATAGGGGTTCCC 60.183 42.308 4.43 0.00 45.90 3.97
5232 22030 6.378848 TGCACAAATTAAACTATAGGGGTTCC 59.621 38.462 4.43 0.00 0.00 3.62
5233 22031 7.399245 TGCACAAATTAAACTATAGGGGTTC 57.601 36.000 4.43 0.00 0.00 3.62
5234 22032 7.233757 TGTTGCACAAATTAAACTATAGGGGTT 59.766 33.333 4.43 0.00 0.00 4.11
5235 22033 6.722129 TGTTGCACAAATTAAACTATAGGGGT 59.278 34.615 4.43 0.00 0.00 4.95
5236 22034 7.164230 TGTTGCACAAATTAAACTATAGGGG 57.836 36.000 4.43 0.00 0.00 4.79
5250 22048 3.119708 GCAATTTGGGTTTGTTGCACAAA 60.120 39.130 9.46 9.46 44.91 2.83
5251 22049 2.421424 GCAATTTGGGTTTGTTGCACAA 59.579 40.909 4.26 0.00 44.63 3.33
5252 22050 2.012673 GCAATTTGGGTTTGTTGCACA 58.987 42.857 4.26 0.00 44.63 4.57
5253 22051 2.753989 GCAATTTGGGTTTGTTGCAC 57.246 45.000 4.26 0.00 44.63 4.57
5255 22053 2.682352 ACTTGCAATTTGGGTTTGTTGC 59.318 40.909 0.00 2.25 45.27 4.17
5256 22054 4.272261 GGTACTTGCAATTTGGGTTTGTTG 59.728 41.667 0.00 0.00 0.00 3.33
5257 22055 4.080863 TGGTACTTGCAATTTGGGTTTGTT 60.081 37.500 0.00 0.00 0.00 2.83
5258 22056 3.452627 TGGTACTTGCAATTTGGGTTTGT 59.547 39.130 0.00 0.00 0.00 2.83
5259 22057 4.065321 TGGTACTTGCAATTTGGGTTTG 57.935 40.909 0.00 0.00 0.00 2.93
5260 22058 4.640364 CATGGTACTTGCAATTTGGGTTT 58.360 39.130 0.00 0.00 0.00 3.27
5261 22059 3.556843 GCATGGTACTTGCAATTTGGGTT 60.557 43.478 14.01 0.00 39.90 4.11
5262 22060 2.028203 GCATGGTACTTGCAATTTGGGT 60.028 45.455 14.01 0.00 39.90 4.51
5263 22061 2.620242 GCATGGTACTTGCAATTTGGG 58.380 47.619 14.01 0.00 39.90 4.12
5264 22062 2.234414 AGGCATGGTACTTGCAATTTGG 59.766 45.455 18.60 0.00 41.95 3.28
5265 22063 3.598019 AGGCATGGTACTTGCAATTTG 57.402 42.857 18.60 0.00 41.95 2.32
5266 22064 3.577848 TCAAGGCATGGTACTTGCAATTT 59.422 39.130 18.60 9.78 42.82 1.82
5267 22065 3.164268 TCAAGGCATGGTACTTGCAATT 58.836 40.909 18.60 0.00 42.82 2.32
5268 22066 2.806434 TCAAGGCATGGTACTTGCAAT 58.194 42.857 18.60 7.66 42.82 3.56
5269 22067 2.284754 TCAAGGCATGGTACTTGCAA 57.715 45.000 18.60 0.00 42.82 4.08
5270 22068 1.885887 GTTCAAGGCATGGTACTTGCA 59.114 47.619 18.60 0.00 42.82 4.08
5271 22069 1.202348 GGTTCAAGGCATGGTACTTGC 59.798 52.381 11.43 11.43 42.82 4.01
5272 22070 2.489329 CAGGTTCAAGGCATGGTACTTG 59.511 50.000 0.00 0.00 44.09 3.16
5273 22071 2.555227 CCAGGTTCAAGGCATGGTACTT 60.555 50.000 0.00 0.00 33.58 2.24
5274 22072 1.004745 CCAGGTTCAAGGCATGGTACT 59.995 52.381 0.00 0.00 33.58 2.73
5275 22073 1.463674 CCAGGTTCAAGGCATGGTAC 58.536 55.000 0.00 0.00 33.58 3.34
5276 22074 0.331278 CCCAGGTTCAAGGCATGGTA 59.669 55.000 0.00 0.00 36.19 3.25
5277 22075 1.077265 CCCAGGTTCAAGGCATGGT 59.923 57.895 0.00 0.00 36.19 3.55
5278 22076 1.077265 ACCCAGGTTCAAGGCATGG 59.923 57.895 0.00 0.00 37.52 3.66
5279 22077 1.252904 CCACCCAGGTTCAAGGCATG 61.253 60.000 0.00 0.00 0.00 4.06
5280 22078 1.077265 CCACCCAGGTTCAAGGCAT 59.923 57.895 0.00 0.00 0.00 4.40
5281 22079 2.520458 CCACCCAGGTTCAAGGCA 59.480 61.111 0.00 0.00 0.00 4.75
5282 22080 2.283173 CCCACCCAGGTTCAAGGC 60.283 66.667 0.00 0.00 34.66 4.35
5283 22081 1.228552 CACCCACCCAGGTTCAAGG 60.229 63.158 0.00 0.00 38.39 3.61
5284 22082 1.228552 CCACCCACCCAGGTTCAAG 60.229 63.158 0.00 0.00 38.39 3.02
5285 22083 2.773527 CCCACCCACCCAGGTTCAA 61.774 63.158 0.00 0.00 38.39 2.69
5286 22084 3.182263 CCCACCCACCCAGGTTCA 61.182 66.667 0.00 0.00 38.39 3.18
5287 22085 2.426305 CTTCCCACCCACCCAGGTTC 62.426 65.000 0.00 0.00 38.39 3.62
5288 22086 2.370403 TTCCCACCCACCCAGGTT 60.370 61.111 0.00 0.00 38.39 3.50
5289 22087 2.858974 CTTCCCACCCACCCAGGT 60.859 66.667 0.00 0.00 42.40 4.00
5290 22088 3.661648 CCTTCCCACCCACCCAGG 61.662 72.222 0.00 0.00 37.03 4.45
5291 22089 4.366684 GCCTTCCCACCCACCCAG 62.367 72.222 0.00 0.00 0.00 4.45
5293 22091 3.662117 GATGCCTTCCCACCCACCC 62.662 68.421 0.00 0.00 0.00 4.61
5294 22092 2.043953 GATGCCTTCCCACCCACC 60.044 66.667 0.00 0.00 0.00 4.61
5295 22093 1.379044 CTGATGCCTTCCCACCCAC 60.379 63.158 0.00 0.00 0.00 4.61
5296 22094 3.089838 CTGATGCCTTCCCACCCA 58.910 61.111 0.00 0.00 0.00 4.51
5297 22095 2.440980 GCTGATGCCTTCCCACCC 60.441 66.667 0.00 0.00 0.00 4.61
5307 22105 2.440980 GTGGGAAGGGGCTGATGC 60.441 66.667 0.00 0.00 38.76 3.91
5308 22106 2.276740 GGTGGGAAGGGGCTGATG 59.723 66.667 0.00 0.00 0.00 3.07
5309 22107 2.204291 TGGTGGGAAGGGGCTGAT 60.204 61.111 0.00 0.00 0.00 2.90
5310 22108 2.409984 TAGTGGTGGGAAGGGGCTGA 62.410 60.000 0.00 0.00 0.00 4.26
5311 22109 1.915078 CTAGTGGTGGGAAGGGGCTG 61.915 65.000 0.00 0.00 0.00 4.85
5312 22110 1.616628 CTAGTGGTGGGAAGGGGCT 60.617 63.158 0.00 0.00 0.00 5.19
5313 22111 2.680370 CCTAGTGGTGGGAAGGGGC 61.680 68.421 0.00 0.00 0.00 5.80
5314 22112 2.680370 GCCTAGTGGTGGGAAGGGG 61.680 68.421 0.00 0.00 35.27 4.79
5315 22113 0.326238 TAGCCTAGTGGTGGGAAGGG 60.326 60.000 0.00 0.00 35.27 3.95
5316 22114 1.417890 CATAGCCTAGTGGTGGGAAGG 59.582 57.143 0.00 0.00 35.27 3.46
5317 22115 1.202698 GCATAGCCTAGTGGTGGGAAG 60.203 57.143 0.00 0.00 35.27 3.46
5318 22116 0.837272 GCATAGCCTAGTGGTGGGAA 59.163 55.000 0.00 0.00 35.27 3.97
5319 22117 1.054406 GGCATAGCCTAGTGGTGGGA 61.054 60.000 0.00 0.00 46.69 4.37
5320 22118 1.451936 GGCATAGCCTAGTGGTGGG 59.548 63.158 0.00 0.00 46.69 4.61
5331 22129 2.611225 ACTGCAGACTAAGGCATAGC 57.389 50.000 23.35 0.00 39.65 2.97
5332 22130 5.886960 AAAAACTGCAGACTAAGGCATAG 57.113 39.130 23.35 0.00 39.65 2.23
5357 22155 6.179756 TCTGAAGGCAATAACAGAGCAATAA 58.820 36.000 0.00 0.00 35.01 1.40
5707 22507 6.547880 AGTCAAGAATATACCTCGAGTGTGAT 59.452 38.462 12.31 4.90 0.00 3.06
5883 27448 4.213270 TGTTTTAGAAAGATGTGAGGTGCG 59.787 41.667 0.00 0.00 0.00 5.34
5920 27486 6.149308 GTCCTTAGGCATTTTCCCAATTTTTG 59.851 38.462 0.00 0.00 0.00 2.44
6013 27580 4.566545 TTTGTGTTGGCTGTTATGTCAG 57.433 40.909 0.00 0.00 38.35 3.51
6081 27688 5.930569 AGTACCCACATTTCTAAAGAACGTC 59.069 40.000 0.00 0.00 33.13 4.34
6149 27757 5.174395 AGTAGAGATCATGCACAGTTGTTC 58.826 41.667 0.00 0.00 0.00 3.18
6154 27762 6.975196 ATAAGAGTAGAGATCATGCACAGT 57.025 37.500 0.00 0.00 0.00 3.55
6179 27824 4.895297 ACCATCATCACCAACTCTGTTTTT 59.105 37.500 0.00 0.00 0.00 1.94
6180 27825 4.279169 CACCATCATCACCAACTCTGTTTT 59.721 41.667 0.00 0.00 0.00 2.43
6181 27826 3.822735 CACCATCATCACCAACTCTGTTT 59.177 43.478 0.00 0.00 0.00 2.83
6182 27827 3.181440 ACACCATCATCACCAACTCTGTT 60.181 43.478 0.00 0.00 0.00 3.16
6183 27828 2.373169 ACACCATCATCACCAACTCTGT 59.627 45.455 0.00 0.00 0.00 3.41
6184 27829 2.745821 CACACCATCATCACCAACTCTG 59.254 50.000 0.00 0.00 0.00 3.35
6185 27830 2.877300 GCACACCATCATCACCAACTCT 60.877 50.000 0.00 0.00 0.00 3.24
6186 27831 1.470098 GCACACCATCATCACCAACTC 59.530 52.381 0.00 0.00 0.00 3.01
6187 27832 1.538047 GCACACCATCATCACCAACT 58.462 50.000 0.00 0.00 0.00 3.16
6188 27833 0.527565 GGCACACCATCATCACCAAC 59.472 55.000 0.00 0.00 35.26 3.77
6189 27834 0.405198 AGGCACACCATCATCACCAA 59.595 50.000 0.00 0.00 39.06 3.67
6190 27835 0.322726 CAGGCACACCATCATCACCA 60.323 55.000 0.00 0.00 39.06 4.17
6191 27836 1.660560 GCAGGCACACCATCATCACC 61.661 60.000 0.00 0.00 39.06 4.02
6192 27837 1.660560 GGCAGGCACACCATCATCAC 61.661 60.000 0.00 0.00 39.06 3.06
6193 27838 1.378911 GGCAGGCACACCATCATCA 60.379 57.895 0.00 0.00 39.06 3.07
6194 27839 0.754217 ATGGCAGGCACACCATCATC 60.754 55.000 0.00 0.00 42.69 2.92
6195 27840 1.308666 ATGGCAGGCACACCATCAT 59.691 52.632 0.00 0.00 42.69 2.45
6196 27841 2.765279 ATGGCAGGCACACCATCA 59.235 55.556 0.00 0.00 42.69 3.07
6199 27844 3.259314 AGGATGGCAGGCACACCA 61.259 61.111 19.51 0.00 41.01 4.17
6200 27845 2.753043 CAGGATGGCAGGCACACC 60.753 66.667 12.37 12.37 0.00 4.16
6201 27846 3.446570 GCAGGATGGCAGGCACAC 61.447 66.667 0.00 0.00 35.86 3.82
6202 27847 3.510559 TTGCAGGATGGCAGGCACA 62.511 57.895 0.00 0.00 45.88 4.57
6203 27848 2.677524 TTGCAGGATGGCAGGCAC 60.678 61.111 0.00 0.00 45.88 5.01
6204 27849 2.677524 GTTGCAGGATGGCAGGCA 60.678 61.111 0.00 0.00 45.88 4.75
6205 27850 0.752743 TATGTTGCAGGATGGCAGGC 60.753 55.000 0.00 0.00 45.88 4.85
6206 27851 1.315690 CTATGTTGCAGGATGGCAGG 58.684 55.000 0.00 0.00 45.88 4.85
6207 27852 1.315690 CCTATGTTGCAGGATGGCAG 58.684 55.000 0.00 0.00 45.88 4.85
6208 27853 0.752743 GCCTATGTTGCAGGATGGCA 60.753 55.000 12.68 0.00 43.19 4.92
6209 27854 1.458639 GGCCTATGTTGCAGGATGGC 61.459 60.000 0.00 10.13 34.91 4.40
6210 27855 1.168407 CGGCCTATGTTGCAGGATGG 61.168 60.000 0.00 0.00 34.91 3.51
6211 27856 0.464373 ACGGCCTATGTTGCAGGATG 60.464 55.000 0.00 0.00 34.91 3.51
6212 27857 0.179045 GACGGCCTATGTTGCAGGAT 60.179 55.000 0.00 0.00 34.91 3.24
6213 27858 1.220749 GACGGCCTATGTTGCAGGA 59.779 57.895 0.00 0.00 34.91 3.86
6214 27859 1.091771 CAGACGGCCTATGTTGCAGG 61.092 60.000 0.00 0.00 36.16 4.85
6215 27860 0.108186 TCAGACGGCCTATGTTGCAG 60.108 55.000 0.00 0.00 0.00 4.41
6216 27861 0.541392 ATCAGACGGCCTATGTTGCA 59.459 50.000 0.00 0.00 0.00 4.08
6217 27862 1.668419 AATCAGACGGCCTATGTTGC 58.332 50.000 0.00 0.00 0.00 4.17
6218 27863 6.313905 GGATATAAATCAGACGGCCTATGTTG 59.686 42.308 0.00 0.00 33.41 3.33
6219 27864 6.407202 GGATATAAATCAGACGGCCTATGTT 58.593 40.000 0.00 0.00 33.41 2.71
6220 27865 5.394224 CGGATATAAATCAGACGGCCTATGT 60.394 44.000 0.00 0.00 33.41 2.29
6221 27866 5.043903 CGGATATAAATCAGACGGCCTATG 58.956 45.833 0.00 0.00 33.41 2.23
6222 27867 4.954202 TCGGATATAAATCAGACGGCCTAT 59.046 41.667 0.00 0.00 32.27 2.57
6223 27868 4.157289 GTCGGATATAAATCAGACGGCCTA 59.843 45.833 0.00 0.00 43.98 3.93
6224 27869 3.056749 GTCGGATATAAATCAGACGGCCT 60.057 47.826 0.00 0.00 43.98 5.19
6225 27870 3.251571 GTCGGATATAAATCAGACGGCC 58.748 50.000 0.00 0.00 43.98 6.13
6230 27875 6.420638 TCCTATCCGTCGGATATAAATCAGA 58.579 40.000 29.52 16.25 42.88 3.27
6231 27876 6.694877 TCCTATCCGTCGGATATAAATCAG 57.305 41.667 29.52 19.34 42.88 2.90
6232 27877 6.096423 CCTTCCTATCCGTCGGATATAAATCA 59.904 42.308 29.52 11.71 42.88 2.57
6233 27878 6.320672 TCCTTCCTATCCGTCGGATATAAATC 59.679 42.308 29.52 0.00 42.88 2.17
6234 27879 6.192773 TCCTTCCTATCCGTCGGATATAAAT 58.807 40.000 29.52 10.89 42.88 1.40
6235 27880 5.573219 TCCTTCCTATCCGTCGGATATAAA 58.427 41.667 29.52 23.71 42.88 1.40
6236 27881 5.183530 TCCTTCCTATCCGTCGGATATAA 57.816 43.478 29.52 24.01 42.88 0.98
6237 27882 4.849813 TCCTTCCTATCCGTCGGATATA 57.150 45.455 29.52 19.61 42.88 0.86
6238 27883 3.733883 TCCTTCCTATCCGTCGGATAT 57.266 47.619 29.52 13.05 42.88 1.63
6239 27884 3.513909 TTCCTTCCTATCCGTCGGATA 57.486 47.619 28.00 28.00 41.16 2.59
6240 27885 2.364647 GTTTCCTTCCTATCCGTCGGAT 59.635 50.000 28.79 28.79 45.40 4.18
6241 27886 1.753073 GTTTCCTTCCTATCCGTCGGA 59.247 52.381 18.01 18.01 35.55 4.55
6242 27887 1.755380 AGTTTCCTTCCTATCCGTCGG 59.245 52.381 4.39 4.39 0.00 4.79
6243 27888 4.547532 CATAGTTTCCTTCCTATCCGTCG 58.452 47.826 0.00 0.00 0.00 5.12
6244 27889 4.344390 ACCATAGTTTCCTTCCTATCCGTC 59.656 45.833 0.00 0.00 0.00 4.79
6245 27890 4.296056 ACCATAGTTTCCTTCCTATCCGT 58.704 43.478 0.00 0.00 0.00 4.69
6246 27891 4.957684 ACCATAGTTTCCTTCCTATCCG 57.042 45.455 0.00 0.00 0.00 4.18
6247 27892 9.642343 AAAATTACCATAGTTTCCTTCCTATCC 57.358 33.333 0.00 0.00 0.00 2.59
6249 27894 8.914011 GCAAAATTACCATAGTTTCCTTCCTAT 58.086 33.333 0.00 0.00 0.00 2.57
6250 27895 7.891183 TGCAAAATTACCATAGTTTCCTTCCTA 59.109 33.333 0.00 0.00 0.00 2.94
6251 27896 6.723977 TGCAAAATTACCATAGTTTCCTTCCT 59.276 34.615 0.00 0.00 0.00 3.36
6252 27897 6.930731 TGCAAAATTACCATAGTTTCCTTCC 58.069 36.000 0.00 0.00 0.00 3.46
6253 27898 8.825667 TTTGCAAAATTACCATAGTTTCCTTC 57.174 30.769 10.02 0.00 0.00 3.46
6254 27899 9.620259 TTTTTGCAAAATTACCATAGTTTCCTT 57.380 25.926 24.39 0.00 0.00 3.36
6255 27900 9.271828 CTTTTTGCAAAATTACCATAGTTTCCT 57.728 29.630 24.39 0.00 0.00 3.36
6256 27901 9.267084 TCTTTTTGCAAAATTACCATAGTTTCC 57.733 29.630 24.39 0.00 0.00 3.13
6260 27905 9.869757 GGTATCTTTTTGCAAAATTACCATAGT 57.130 29.630 30.61 17.31 33.29 2.12
6261 27906 9.313118 GGGTATCTTTTTGCAAAATTACCATAG 57.687 33.333 33.01 24.07 33.95 2.23
6262 27907 8.816894 TGGGTATCTTTTTGCAAAATTACCATA 58.183 29.630 33.01 25.83 33.95 2.74
6263 27908 7.606073 GTGGGTATCTTTTTGCAAAATTACCAT 59.394 33.333 33.01 21.69 33.95 3.55
6264 27909 6.931840 GTGGGTATCTTTTTGCAAAATTACCA 59.068 34.615 33.01 26.62 33.95 3.25
6265 27910 6.931840 TGTGGGTATCTTTTTGCAAAATTACC 59.068 34.615 29.31 29.31 32.83 2.85
6266 27911 7.095397 GGTGTGGGTATCTTTTTGCAAAATTAC 60.095 37.037 24.39 22.13 0.00 1.89
6267 27912 6.931840 GGTGTGGGTATCTTTTTGCAAAATTA 59.068 34.615 24.39 15.75 0.00 1.40
6268 27913 5.762711 GGTGTGGGTATCTTTTTGCAAAATT 59.237 36.000 24.39 14.72 0.00 1.82
6269 27914 5.304778 GGTGTGGGTATCTTTTTGCAAAAT 58.695 37.500 24.39 12.94 0.00 1.82
6270 27915 4.443598 GGGTGTGGGTATCTTTTTGCAAAA 60.444 41.667 20.46 20.46 0.00 2.44
6271 27916 3.070302 GGGTGTGGGTATCTTTTTGCAAA 59.930 43.478 8.05 8.05 0.00 3.68
6272 27917 2.630580 GGGTGTGGGTATCTTTTTGCAA 59.369 45.455 0.00 0.00 0.00 4.08
6273 27918 2.243810 GGGTGTGGGTATCTTTTTGCA 58.756 47.619 0.00 0.00 0.00 4.08
6274 27919 1.548719 GGGGTGTGGGTATCTTTTTGC 59.451 52.381 0.00 0.00 0.00 3.68
6275 27920 3.089284 GAGGGGTGTGGGTATCTTTTTG 58.911 50.000 0.00 0.00 0.00 2.44
6276 27921 2.993863 AGAGGGGTGTGGGTATCTTTTT 59.006 45.455 0.00 0.00 0.00 1.94
6277 27922 2.576648 GAGAGGGGTGTGGGTATCTTTT 59.423 50.000 0.00 0.00 0.00 2.27
6278 27923 2.197465 GAGAGGGGTGTGGGTATCTTT 58.803 52.381 0.00 0.00 0.00 2.52
6279 27924 1.625508 GGAGAGGGGTGTGGGTATCTT 60.626 57.143 0.00 0.00 0.00 2.40
6280 27925 0.031010 GGAGAGGGGTGTGGGTATCT 60.031 60.000 0.00 0.00 0.00 1.98
6281 27926 0.326238 TGGAGAGGGGTGTGGGTATC 60.326 60.000 0.00 0.00 0.00 2.24
6282 27927 0.620700 GTGGAGAGGGGTGTGGGTAT 60.621 60.000 0.00 0.00 0.00 2.73
6283 27928 1.229400 GTGGAGAGGGGTGTGGGTA 60.229 63.158 0.00 0.00 0.00 3.69
6284 27929 2.529389 GTGGAGAGGGGTGTGGGT 60.529 66.667 0.00 0.00 0.00 4.51
6285 27930 1.500783 AATGTGGAGAGGGGTGTGGG 61.501 60.000 0.00 0.00 0.00 4.61
6286 27931 0.405585 AAATGTGGAGAGGGGTGTGG 59.594 55.000 0.00 0.00 0.00 4.17
6287 27932 1.538047 CAAATGTGGAGAGGGGTGTG 58.462 55.000 0.00 0.00 0.00 3.82
6288 27933 0.251341 GCAAATGTGGAGAGGGGTGT 60.251 55.000 0.00 0.00 0.00 4.16
6289 27934 0.251297 TGCAAATGTGGAGAGGGGTG 60.251 55.000 0.00 0.00 0.00 4.61
6290 27935 0.482446 TTGCAAATGTGGAGAGGGGT 59.518 50.000 0.00 0.00 0.00 4.95
6291 27936 1.631405 TTTGCAAATGTGGAGAGGGG 58.369 50.000 8.05 0.00 0.00 4.79
6292 27937 4.142093 CCTTATTTGCAAATGTGGAGAGGG 60.142 45.833 30.43 17.11 0.00 4.30
6293 27938 4.678840 GCCTTATTTGCAAATGTGGAGAGG 60.679 45.833 31.67 25.73 0.00 3.69
6294 27939 4.427312 GCCTTATTTGCAAATGTGGAGAG 58.573 43.478 31.67 20.39 0.00 3.20
6295 27940 3.195396 GGCCTTATTTGCAAATGTGGAGA 59.805 43.478 31.67 14.88 0.00 3.71
6296 27941 3.196254 AGGCCTTATTTGCAAATGTGGAG 59.804 43.478 31.67 23.26 0.00 3.86
6297 27942 3.172339 AGGCCTTATTTGCAAATGTGGA 58.828 40.909 31.67 15.77 0.00 4.02
6298 27943 3.615224 AGGCCTTATTTGCAAATGTGG 57.385 42.857 30.43 28.46 0.00 4.17
6299 27944 3.934579 GGAAGGCCTTATTTGCAAATGTG 59.065 43.478 30.43 21.90 0.00 3.21
6300 27945 3.055167 GGGAAGGCCTTATTTGCAAATGT 60.055 43.478 30.43 12.33 0.00 2.71
6301 27946 3.198417 AGGGAAGGCCTTATTTGCAAATG 59.802 43.478 30.43 17.22 0.00 2.32
6302 27947 3.452264 GAGGGAAGGCCTTATTTGCAAAT 59.548 43.478 26.72 26.72 0.00 2.32
6303 27948 2.831526 GAGGGAAGGCCTTATTTGCAAA 59.168 45.455 20.54 15.44 0.00 3.68
6304 27949 2.456577 GAGGGAAGGCCTTATTTGCAA 58.543 47.619 20.54 0.00 0.00 4.08
6305 27950 1.681780 CGAGGGAAGGCCTTATTTGCA 60.682 52.381 20.54 0.00 0.00 4.08
6306 27951 1.025041 CGAGGGAAGGCCTTATTTGC 58.975 55.000 20.54 5.12 0.00 3.68
6307 27952 2.420058 ACGAGGGAAGGCCTTATTTG 57.580 50.000 20.54 12.94 0.00 2.32
6308 27953 2.307686 TGAACGAGGGAAGGCCTTATTT 59.692 45.455 20.54 6.38 0.00 1.40
6309 27954 1.913419 TGAACGAGGGAAGGCCTTATT 59.087 47.619 20.54 6.79 0.00 1.40
6310 27955 1.580059 TGAACGAGGGAAGGCCTTAT 58.420 50.000 20.54 7.60 0.00 1.73
6311 27956 1.485066 GATGAACGAGGGAAGGCCTTA 59.515 52.381 20.54 0.00 0.00 2.69
6312 27957 0.253327 GATGAACGAGGGAAGGCCTT 59.747 55.000 20.65 20.65 0.00 4.35
6313 27958 1.627297 GGATGAACGAGGGAAGGCCT 61.627 60.000 0.00 0.00 0.00 5.19
6314 27959 1.153147 GGATGAACGAGGGAAGGCC 60.153 63.158 0.00 0.00 0.00 5.19
6315 27960 0.253327 AAGGATGAACGAGGGAAGGC 59.747 55.000 0.00 0.00 0.00 4.35
6316 27961 2.789409 AAAGGATGAACGAGGGAAGG 57.211 50.000 0.00 0.00 0.00 3.46
6317 27962 3.935828 GAGAAAAGGATGAACGAGGGAAG 59.064 47.826 0.00 0.00 0.00 3.46
6318 27963 3.307480 GGAGAAAAGGATGAACGAGGGAA 60.307 47.826 0.00 0.00 0.00 3.97
6319 27964 2.236395 GGAGAAAAGGATGAACGAGGGA 59.764 50.000 0.00 0.00 0.00 4.20
6320 27965 2.633488 GGAGAAAAGGATGAACGAGGG 58.367 52.381 0.00 0.00 0.00 4.30
6321 27966 2.027192 TGGGAGAAAAGGATGAACGAGG 60.027 50.000 0.00 0.00 0.00 4.63
6322 27967 3.003480 GTGGGAGAAAAGGATGAACGAG 58.997 50.000 0.00 0.00 0.00 4.18
6323 27968 2.370519 TGTGGGAGAAAAGGATGAACGA 59.629 45.455 0.00 0.00 0.00 3.85
6324 27969 2.778299 TGTGGGAGAAAAGGATGAACG 58.222 47.619 0.00 0.00 0.00 3.95
6325 27970 4.398319 TCTTGTGGGAGAAAAGGATGAAC 58.602 43.478 0.00 0.00 0.00 3.18
6326 27971 4.722526 TCTTGTGGGAGAAAAGGATGAA 57.277 40.909 0.00 0.00 0.00 2.57
6327 27972 4.934797 ATCTTGTGGGAGAAAAGGATGA 57.065 40.909 0.00 0.00 0.00 2.92
6328 27973 6.660949 AGTTTATCTTGTGGGAGAAAAGGATG 59.339 38.462 0.00 0.00 29.99 3.51
6329 27974 6.794534 AGTTTATCTTGTGGGAGAAAAGGAT 58.205 36.000 0.00 0.00 29.99 3.24
6330 27975 6.200878 AGTTTATCTTGTGGGAGAAAAGGA 57.799 37.500 0.00 0.00 29.99 3.36
6331 27976 7.168905 AGTAGTTTATCTTGTGGGAGAAAAGG 58.831 38.462 0.00 0.00 29.99 3.11
6332 27977 7.878127 TGAGTAGTTTATCTTGTGGGAGAAAAG 59.122 37.037 0.00 0.00 29.99 2.27
6333 27978 7.741785 TGAGTAGTTTATCTTGTGGGAGAAAA 58.258 34.615 0.00 0.00 29.99 2.29
6334 27979 7.311092 TGAGTAGTTTATCTTGTGGGAGAAA 57.689 36.000 0.00 0.00 0.00 2.52
6335 27980 6.928348 TGAGTAGTTTATCTTGTGGGAGAA 57.072 37.500 0.00 0.00 0.00 2.87
6336 27981 7.618117 TGTATGAGTAGTTTATCTTGTGGGAGA 59.382 37.037 0.00 0.00 0.00 3.71
6337 27982 7.782049 TGTATGAGTAGTTTATCTTGTGGGAG 58.218 38.462 0.00 0.00 0.00 4.30
6338 27983 7.727578 TGTATGAGTAGTTTATCTTGTGGGA 57.272 36.000 0.00 0.00 0.00 4.37
6339 27984 8.786826 TTTGTATGAGTAGTTTATCTTGTGGG 57.213 34.615 0.00 0.00 0.00 4.61
6341 27986 9.708222 GCATTTGTATGAGTAGTTTATCTTGTG 57.292 33.333 0.00 0.00 33.37 3.33
6342 27987 9.448438 TGCATTTGTATGAGTAGTTTATCTTGT 57.552 29.630 0.00 0.00 33.37 3.16
6348 27993 9.665719 TCAAGATGCATTTGTATGAGTAGTTTA 57.334 29.630 0.00 0.00 33.37 2.01
6349 27994 8.565896 TCAAGATGCATTTGTATGAGTAGTTT 57.434 30.769 0.00 0.00 33.37 2.66
6350 27995 8.618677 CATCAAGATGCATTTGTATGAGTAGTT 58.381 33.333 0.00 0.00 33.37 2.24
6351 27996 7.772292 ACATCAAGATGCATTTGTATGAGTAGT 59.228 33.333 22.17 13.08 42.39 2.73
6352 27997 8.151141 ACATCAAGATGCATTTGTATGAGTAG 57.849 34.615 22.17 12.72 42.39 2.57
6353 27998 8.510243 AACATCAAGATGCATTTGTATGAGTA 57.490 30.769 22.17 8.59 42.39 2.59
6354 27999 7.400599 AACATCAAGATGCATTTGTATGAGT 57.599 32.000 22.17 12.92 42.39 3.41
6355 28000 6.916387 GGAACATCAAGATGCATTTGTATGAG 59.084 38.462 22.17 12.56 42.39 2.90
6356 28001 6.458615 CGGAACATCAAGATGCATTTGTATGA 60.459 38.462 22.17 15.31 42.39 2.15
6357 28002 5.684184 CGGAACATCAAGATGCATTTGTATG 59.316 40.000 9.85 13.57 42.39 2.39
6358 28003 5.357878 ACGGAACATCAAGATGCATTTGTAT 59.642 36.000 9.85 1.80 42.39 2.29
6359 28004 4.699735 ACGGAACATCAAGATGCATTTGTA 59.300 37.500 9.85 0.00 42.39 2.41
6360 28005 3.507233 ACGGAACATCAAGATGCATTTGT 59.493 39.130 9.85 0.00 42.39 2.83
6361 28006 3.855379 CACGGAACATCAAGATGCATTTG 59.145 43.478 9.85 7.88 42.39 2.32
6362 28007 3.674138 GCACGGAACATCAAGATGCATTT 60.674 43.478 9.85 0.00 42.39 2.32
6363 28008 2.159338 GCACGGAACATCAAGATGCATT 60.159 45.455 9.85 0.00 42.39 3.56
6364 28009 1.402968 GCACGGAACATCAAGATGCAT 59.597 47.619 9.85 0.00 42.39 3.96
6365 28010 0.804364 GCACGGAACATCAAGATGCA 59.196 50.000 9.85 0.00 42.39 3.96
6366 28011 0.804364 TGCACGGAACATCAAGATGC 59.196 50.000 9.85 0.00 42.39 3.91
6367 28012 2.725759 CGTTGCACGGAACATCAAGATG 60.726 50.000 8.45 8.45 40.19 2.90
6368 28013 1.464608 CGTTGCACGGAACATCAAGAT 59.535 47.619 2.31 0.00 38.08 2.40
6369 28014 0.865111 CGTTGCACGGAACATCAAGA 59.135 50.000 2.31 0.00 38.08 3.02
6370 28015 0.725784 GCGTTGCACGGAACATCAAG 60.726 55.000 10.02 0.00 42.82 3.02
6371 28016 1.281353 GCGTTGCACGGAACATCAA 59.719 52.632 10.02 0.00 42.82 2.57
6372 28017 1.233950 ATGCGTTGCACGGAACATCA 61.234 50.000 6.93 0.00 46.78 3.07
6373 28018 0.794229 CATGCGTTGCACGGAACATC 60.794 55.000 6.93 0.00 46.78 3.06
6374 28019 1.209898 CATGCGTTGCACGGAACAT 59.790 52.632 6.93 2.04 46.78 2.71
6375 28020 2.636462 CATGCGTTGCACGGAACA 59.364 55.556 6.93 0.00 46.78 3.18
6376 28021 2.126888 CCATGCGTTGCACGGAAC 60.127 61.111 0.00 0.00 45.44 3.62
6377 28022 3.361158 CCCATGCGTTGCACGGAA 61.361 61.111 5.32 0.00 45.44 4.30
6380 28025 4.118995 ATGCCCATGCGTTGCACG 62.119 61.111 2.13 4.61 43.04 5.34
6381 28026 2.202650 GATGCCCATGCGTTGCAC 60.203 61.111 2.13 0.00 43.04 4.57
6382 28027 1.978080 AAGATGCCCATGCGTTGCA 60.978 52.632 2.57 2.57 44.86 4.08
6383 28028 1.517694 CAAGATGCCCATGCGTTGC 60.518 57.895 0.00 0.00 41.78 4.17
6384 28029 1.517694 GCAAGATGCCCATGCGTTG 60.518 57.895 0.00 0.00 41.78 4.10
6385 28030 0.394216 TAGCAAGATGCCCATGCGTT 60.394 50.000 0.00 0.00 46.52 4.84
6386 28031 0.816825 CTAGCAAGATGCCCATGCGT 60.817 55.000 0.00 0.00 46.52 5.24
6387 28032 0.816825 ACTAGCAAGATGCCCATGCG 60.817 55.000 0.00 0.00 46.52 4.73
6388 28033 1.396653 AACTAGCAAGATGCCCATGC 58.603 50.000 0.00 0.00 46.52 4.06
6389 28034 3.018856 TCAAACTAGCAAGATGCCCATG 58.981 45.455 0.00 0.00 46.52 3.66
6390 28035 3.285484 CTCAAACTAGCAAGATGCCCAT 58.715 45.455 0.00 0.00 46.52 4.00
6391 28036 2.040278 ACTCAAACTAGCAAGATGCCCA 59.960 45.455 0.00 0.00 46.52 5.36
6392 28037 2.716217 ACTCAAACTAGCAAGATGCCC 58.284 47.619 0.00 0.00 46.52 5.36
6393 28038 4.773323 AAACTCAAACTAGCAAGATGCC 57.227 40.909 0.00 0.00 46.52 4.40
6394 28039 7.862873 ACTTTAAAACTCAAACTAGCAAGATGC 59.137 33.333 0.00 0.00 45.46 3.91
6395 28040 9.173939 CACTTTAAAACTCAAACTAGCAAGATG 57.826 33.333 0.00 0.00 0.00 2.90
6396 28041 8.352942 CCACTTTAAAACTCAAACTAGCAAGAT 58.647 33.333 0.00 0.00 0.00 2.40
6397 28042 7.338449 ACCACTTTAAAACTCAAACTAGCAAGA 59.662 33.333 0.00 0.00 0.00 3.02
6398 28043 7.480810 ACCACTTTAAAACTCAAACTAGCAAG 58.519 34.615 0.00 0.00 0.00 4.01
6399 28044 7.338449 AGACCACTTTAAAACTCAAACTAGCAA 59.662 33.333 0.00 0.00 0.00 3.91
6400 28045 6.826741 AGACCACTTTAAAACTCAAACTAGCA 59.173 34.615 0.00 0.00 0.00 3.49
6401 28046 7.260558 AGACCACTTTAAAACTCAAACTAGC 57.739 36.000 0.00 0.00 0.00 3.42
6402 28047 8.129211 CCAAGACCACTTTAAAACTCAAACTAG 58.871 37.037 0.00 0.00 33.70 2.57
6403 28048 7.067737 CCCAAGACCACTTTAAAACTCAAACTA 59.932 37.037 0.00 0.00 33.70 2.24
6404 28049 6.127451 CCCAAGACCACTTTAAAACTCAAACT 60.127 38.462 0.00 0.00 33.70 2.66
6405 28050 6.040247 CCCAAGACCACTTTAAAACTCAAAC 58.960 40.000 0.00 0.00 33.70 2.93
6406 28051 5.717654 ACCCAAGACCACTTTAAAACTCAAA 59.282 36.000 0.00 0.00 33.70 2.69
6407 28052 5.265989 ACCCAAGACCACTTTAAAACTCAA 58.734 37.500 0.00 0.00 33.70 3.02
6421 28067 4.409718 TTTAAAGCCAAAACCCAAGACC 57.590 40.909 0.00 0.00 0.00 3.85
6422 28068 5.820423 ACATTTTAAAGCCAAAACCCAAGAC 59.180 36.000 0.00 0.00 30.57 3.01
6423 28069 5.995446 ACATTTTAAAGCCAAAACCCAAGA 58.005 33.333 0.00 0.00 30.57 3.02
6424 28070 6.542005 AGAACATTTTAAAGCCAAAACCCAAG 59.458 34.615 0.00 0.00 30.57 3.61
6425 28071 6.418946 AGAACATTTTAAAGCCAAAACCCAA 58.581 32.000 0.00 0.00 30.57 4.12
6426 28072 5.995446 AGAACATTTTAAAGCCAAAACCCA 58.005 33.333 0.00 0.00 30.57 4.51
6427 28073 6.540551 TCAAGAACATTTTAAAGCCAAAACCC 59.459 34.615 0.00 0.00 30.57 4.11
6494 28160 1.574702 GGGACAAGCTTTTCCGGACG 61.575 60.000 22.30 0.00 32.00 4.79
6497 28163 0.250727 TGAGGGACAAGCTTTTCCGG 60.251 55.000 22.30 0.00 32.00 5.14
6499 28165 3.306294 CCATTTGAGGGACAAGCTTTTCC 60.306 47.826 21.34 21.34 39.77 3.13
6500 28166 3.573967 TCCATTTGAGGGACAAGCTTTTC 59.426 43.478 3.91 3.91 39.77 2.29
6504 28170 2.042162 ACATCCATTTGAGGGACAAGCT 59.958 45.455 0.00 0.00 39.77 3.74
6505 28171 2.450476 ACATCCATTTGAGGGACAAGC 58.550 47.619 0.00 0.00 39.77 4.01
6507 28173 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
6510 28176 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
6512 28178 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
6513 28179 5.614308 TGGTGCTAGATACATCCATTTGAG 58.386 41.667 0.00 0.00 0.00 3.02
6515 28181 5.824624 AGTTGGTGCTAGATACATCCATTTG 59.175 40.000 0.00 0.00 0.00 2.32
6516 28182 6.006275 AGTTGGTGCTAGATACATCCATTT 57.994 37.500 0.00 0.00 0.00 2.32
6517 28183 5.367937 AGAGTTGGTGCTAGATACATCCATT 59.632 40.000 0.00 0.00 0.00 3.16
6518 28184 4.904251 AGAGTTGGTGCTAGATACATCCAT 59.096 41.667 0.00 0.00 0.00 3.41
6519 28185 4.290093 AGAGTTGGTGCTAGATACATCCA 58.710 43.478 0.00 0.00 0.00 3.41
6520 28186 4.946478 AGAGTTGGTGCTAGATACATCC 57.054 45.455 0.00 0.00 0.00 3.51
6521 28187 4.979197 CGAAGAGTTGGTGCTAGATACATC 59.021 45.833 0.00 0.00 0.00 3.06
6522 28188 4.737946 GCGAAGAGTTGGTGCTAGATACAT 60.738 45.833 0.00 0.00 0.00 2.29
6523 28189 3.428999 GCGAAGAGTTGGTGCTAGATACA 60.429 47.826 0.00 0.00 0.00 2.29
6524 28190 3.117046 GCGAAGAGTTGGTGCTAGATAC 58.883 50.000 0.00 0.00 0.00 2.24
6526 28192 1.134670 GGCGAAGAGTTGGTGCTAGAT 60.135 52.381 0.00 0.00 0.00 1.98
6527 28193 0.246635 GGCGAAGAGTTGGTGCTAGA 59.753 55.000 0.00 0.00 0.00 2.43
6528 28194 0.247736 AGGCGAAGAGTTGGTGCTAG 59.752 55.000 0.00 0.00 0.00 3.42
6529 28195 0.037326 CAGGCGAAGAGTTGGTGCTA 60.037 55.000 0.00 0.00 0.00 3.49
6530 28196 1.302033 CAGGCGAAGAGTTGGTGCT 60.302 57.895 0.00 0.00 0.00 4.40
6532 28198 0.249868 TGTCAGGCGAAGAGTTGGTG 60.250 55.000 0.00 0.00 0.00 4.17
6535 28201 0.597637 ACGTGTCAGGCGAAGAGTTG 60.598 55.000 0.00 0.00 0.00 3.16
6536 28202 0.104304 AACGTGTCAGGCGAAGAGTT 59.896 50.000 0.00 0.00 0.00 3.01
6537 28203 0.104304 AAACGTGTCAGGCGAAGAGT 59.896 50.000 0.00 0.00 0.00 3.24
6541 28298 2.609350 GGTATAAACGTGTCAGGCGAA 58.391 47.619 0.00 0.00 0.00 4.70
6577 28335 5.533903 GGATTTCCTGCAGTTCATCACATAT 59.466 40.000 13.81 0.00 0.00 1.78
6776 28537 1.133009 ACTCCCTTGGTCTCAGTGACT 60.133 52.381 2.72 0.00 44.74 3.41
6825 28586 3.554934 TCCATTGGAGATGTACATTGGC 58.445 45.455 10.30 2.61 37.79 4.52
7037 28801 1.066858 GGATCTTGTCTTCGTGCTCCA 60.067 52.381 0.00 0.00 0.00 3.86
7051 28815 0.620556 ATGTTGCCGGTCAGGATCTT 59.379 50.000 1.90 0.00 45.00 2.40
7233 28997 0.979187 GGTGGTCGGGGTGATAGGAA 60.979 60.000 0.00 0.00 0.00 3.36
7234 28998 1.382146 GGTGGTCGGGGTGATAGGA 60.382 63.158 0.00 0.00 0.00 2.94
7296 29060 0.313987 TCTTCAGAAGCTCGTCGCAA 59.686 50.000 5.15 0.00 42.61 4.85
7308 29072 6.565234 GTTATTCGACTCCTTGATCTTCAGA 58.435 40.000 0.00 0.00 0.00 3.27
7340 29104 5.539955 ACAGATAAATGACTTTGCAAAGGGT 59.460 36.000 35.65 21.45 40.31 4.34
7341 29105 5.865552 CACAGATAAATGACTTTGCAAAGGG 59.134 40.000 35.65 18.53 40.31 3.95
7343 29107 6.680810 TCCACAGATAAATGACTTTGCAAAG 58.319 36.000 32.53 32.53 41.73 2.77
7344 29108 6.489700 TCTCCACAGATAAATGACTTTGCAAA 59.510 34.615 12.14 12.14 0.00 3.68
7345 29109 6.003326 TCTCCACAGATAAATGACTTTGCAA 58.997 36.000 0.00 0.00 0.00 4.08
7346 29110 5.559770 TCTCCACAGATAAATGACTTTGCA 58.440 37.500 0.00 0.00 0.00 4.08
7351 29115 9.553064 GTGAATATTCTCCACAGATAAATGACT 57.447 33.333 16.24 0.00 0.00 3.41
7352 29116 9.553064 AGTGAATATTCTCCACAGATAAATGAC 57.447 33.333 16.24 0.94 33.53 3.06
7357 29121 9.868160 TCTCTAGTGAATATTCTCCACAGATAA 57.132 33.333 16.24 5.33 33.53 1.75
7358 29122 9.513906 CTCTCTAGTGAATATTCTCCACAGATA 57.486 37.037 16.24 7.70 33.53 1.98
7359 29123 8.004215 ACTCTCTAGTGAATATTCTCCACAGAT 58.996 37.037 16.24 0.00 33.57 2.90
7360 29124 7.350382 ACTCTCTAGTGAATATTCTCCACAGA 58.650 38.462 16.24 12.98 33.57 3.41
7361 29125 7.255451 GGACTCTCTAGTGAATATTCTCCACAG 60.255 44.444 16.24 9.98 35.56 3.66
7362 29126 6.547880 GGACTCTCTAGTGAATATTCTCCACA 59.452 42.308 16.24 1.48 35.56 4.17
7363 29127 6.775629 AGGACTCTCTAGTGAATATTCTCCAC 59.224 42.308 16.24 7.26 35.56 4.02
7364 29128 6.775142 CAGGACTCTCTAGTGAATATTCTCCA 59.225 42.308 16.24 1.55 35.56 3.86
7365 29129 6.294508 GCAGGACTCTCTAGTGAATATTCTCC 60.295 46.154 16.24 10.84 35.56 3.71
7366 29130 6.294508 GGCAGGACTCTCTAGTGAATATTCTC 60.295 46.154 16.24 12.58 35.56 2.87
7367 29131 5.538433 GGCAGGACTCTCTAGTGAATATTCT 59.462 44.000 16.24 0.00 35.56 2.40
7368 29132 5.279256 GGGCAGGACTCTCTAGTGAATATTC 60.279 48.000 8.60 8.60 35.56 1.75
7369 29133 4.591072 GGGCAGGACTCTCTAGTGAATATT 59.409 45.833 0.00 0.00 35.56 1.28
7370 29134 4.156477 GGGCAGGACTCTCTAGTGAATAT 58.844 47.826 0.00 0.00 35.56 1.28
7371 29135 3.567397 GGGCAGGACTCTCTAGTGAATA 58.433 50.000 0.00 0.00 35.56 1.75
7372 29136 2.393646 GGGCAGGACTCTCTAGTGAAT 58.606 52.381 0.00 0.00 35.56 2.57
7373 29137 1.619977 GGGGCAGGACTCTCTAGTGAA 60.620 57.143 0.00 0.00 35.56 3.18
7374 29138 0.033011 GGGGCAGGACTCTCTAGTGA 60.033 60.000 0.00 0.00 35.56 3.41
7375 29139 1.045911 GGGGGCAGGACTCTCTAGTG 61.046 65.000 0.00 0.00 35.56 2.74
7376 29140 1.225403 AGGGGGCAGGACTCTCTAGT 61.225 60.000 0.00 0.00 39.21 2.57
7377 29141 0.469144 GAGGGGGCAGGACTCTCTAG 60.469 65.000 0.00 0.00 0.00 2.43
7378 29142 1.621377 GAGGGGGCAGGACTCTCTA 59.379 63.158 0.00 0.00 0.00 2.43
7379 29143 2.366570 GAGGGGGCAGGACTCTCT 59.633 66.667 0.00 0.00 0.00 3.10
7380 29144 2.766229 GGAGGGGGCAGGACTCTC 60.766 72.222 0.00 0.00 0.00 3.20
7381 29145 3.288381 AGGAGGGGGCAGGACTCT 61.288 66.667 0.00 0.00 0.00 3.24
7382 29146 2.766229 GAGGAGGGGGCAGGACTC 60.766 72.222 0.00 0.00 0.00 3.36
7383 29147 4.423209 GGAGGAGGGGGCAGGACT 62.423 72.222 0.00 0.00 0.00 3.85
8161 29945 1.215647 GGCGTGCTGTAGCTGTACT 59.784 57.895 5.38 0.00 42.66 2.73
8162 29946 0.460284 ATGGCGTGCTGTAGCTGTAC 60.460 55.000 5.38 0.00 42.66 2.90
8163 29947 0.179111 GATGGCGTGCTGTAGCTGTA 60.179 55.000 5.38 0.00 42.66 2.74
8165 29949 2.176273 GGATGGCGTGCTGTAGCTG 61.176 63.158 5.38 0.00 42.66 4.24
8166 29950 2.187946 GGATGGCGTGCTGTAGCT 59.812 61.111 5.38 0.00 42.66 3.32
8167 29951 2.897350 GGGATGGCGTGCTGTAGC 60.897 66.667 0.00 0.00 42.50 3.58
8168 29952 2.203070 GGGGATGGCGTGCTGTAG 60.203 66.667 0.00 0.00 0.00 2.74
8170 29954 3.628646 GAAGGGGATGGCGTGCTGT 62.629 63.158 0.00 0.00 0.00 4.40
8171 29955 2.825836 GAAGGGGATGGCGTGCTG 60.826 66.667 0.00 0.00 0.00 4.41
8177 29961 2.666596 CTACAGCGGAAGGGGATGGC 62.667 65.000 0.00 0.00 0.00 4.40
8178 29962 1.447643 CTACAGCGGAAGGGGATGG 59.552 63.158 0.00 0.00 0.00 3.51
8210 30243 4.667262 CGTAGAACTCTGGAATGTCTCTG 58.333 47.826 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.