AutoCloner

Multiple sequence alignment - TraesCS4B01G231600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G231600	chr4B	100.000	3053	0	0	1	3053	483516750	483513698	0.000000e+00	5638.0
1	TraesCS4B01G231600	chr4D	91.280	1766	104	24	640	2391	393360241	393358512	0.000000e+00	2362.0
2	TraesCS4B01G231600	chr4D	93.260	638	37	3	1	637	349001860	349001228	0.000000e+00	935.0
3	TraesCS4B01G231600	chr4D	88.110	656	37	11	2402	3052	393708501	393709120	0.000000e+00	741.0
4	TraesCS4B01G231600	chr4A	91.744	1187	63	10	910	2093	75260392	75259238	0.000000e+00	1616.0
5	TraesCS4B01G231600	chr4A	91.040	971	60	10	2091	3053	75259107	75258156	0.000000e+00	1286.0
6	TraesCS4B01G231600	chr4A	80.909	220	17	12	640	837	75265796	75265580	1.900000e-32	150.0
7	TraesCS4B01G231600	chr7B	97.962	638	13	0	1	638	58246292	58245655	0.000000e+00	1107.0
8	TraesCS4B01G231600	chr3D	96.860	637	20	0	1	637	30696861	30697497	0.000000e+00	1066.0
9	TraesCS4B01G231600	chr2D	96.417	642	22	1	1	642	528420397	528421037	0.000000e+00	1057.0
10	TraesCS4B01G231600	chr2D	94.662	637	22	3	1	637	314343147	314343771	0.000000e+00	977.0
11	TraesCS4B01G231600	chr2D	82.781	906	114	21	650	1519	531493094	531493993	0.000000e+00	771.0
12	TraesCS4B01G231600	chr1D	94.540	641	33	2	1	639	7758799	7758159	0.000000e+00	989.0
13	TraesCS4B01G231600	chr5D	93.271	639	41	2	1	637	414015410	414014772	0.000000e+00	941.0
14	TraesCS4B01G231600	chr3A	93.125	640	40	4	1	637	555679853	555679215	0.000000e+00	935.0
15	TraesCS4B01G231600	chr3A	90.476	42	4	0	1791	1832	696708332	696708373	4.250000e-04	56.5
16	TraesCS4B01G231600	chr2B	91.393	639	52	3	1	637	757927324	757927961	0.000000e+00	872.0
17	TraesCS4B01G231600	chr2B	83.092	899	106	24	650	1519	631370461	631371342	0.000000e+00	776.0
18	TraesCS4B01G231600	chr2B	90.323	248	24	0	2806	3053	92132	91885	2.940000e-85	326.0
19	TraesCS4B01G231600	chr2B	92.857	42	3	0	1792	1833	53468947	53468988	9.140000e-06	62.1
20	TraesCS4B01G231600	chr2A	82.851	898	110	15	650	1519	676170504	676171385	0.000000e+00	765.0
21	TraesCS4B01G231600	chr7D	92.607	257	19	0	2797	3053	617079076	617079332	1.340000e-98	370.0
22	TraesCS4B01G231600	chr7A	91.440	257	22	0	2797	3053	709808956	709809212	1.350000e-93	353.0
23	TraesCS4B01G231600	chr1B	100.000	29	0	0	1805	1833	275152859	275152831	2.000000e-03	54.7
24	TraesCS4B01G231600	chr5A	100.000	28	0	0	1805	1832	508283676	508283649	6.000000e-03	52.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G231600	chr4B	483513698	483516750	3052	True	5638	5638	100.000	1	3053	1	chr4B.!!$R1	3052
1	TraesCS4B01G231600	chr4D	393358512	393360241	1729	True	2362	2362	91.280	640	2391	1	chr4D.!!$R2	1751
2	TraesCS4B01G231600	chr4D	349001228	349001860	632	True	935	935	93.260	1	637	1	chr4D.!!$R1	636
3	TraesCS4B01G231600	chr4D	393708501	393709120	619	False	741	741	88.110	2402	3052	1	chr4D.!!$F1	650
4	TraesCS4B01G231600	chr4A	75258156	75260392	2236	True	1451	1616	91.392	910	3053	2	chr4A.!!$R2	2143
5	TraesCS4B01G231600	chr7B	58245655	58246292	637	True	1107	1107	97.962	1	638	1	chr7B.!!$R1	637
6	TraesCS4B01G231600	chr3D	30696861	30697497	636	False	1066	1066	96.860	1	637	1	chr3D.!!$F1	636
7	TraesCS4B01G231600	chr2D	528420397	528421037	640	False	1057	1057	96.417	1	642	1	chr2D.!!$F2	641
8	TraesCS4B01G231600	chr2D	314343147	314343771	624	False	977	977	94.662	1	637	1	chr2D.!!$F1	636
9	TraesCS4B01G231600	chr2D	531493094	531493993	899	False	771	771	82.781	650	1519	1	chr2D.!!$F3	869
10	TraesCS4B01G231600	chr1D	7758159	7758799	640	True	989	989	94.540	1	639	1	chr1D.!!$R1	638
11	TraesCS4B01G231600	chr5D	414014772	414015410	638	True	941	941	93.271	1	637	1	chr5D.!!$R1	636
12	TraesCS4B01G231600	chr3A	555679215	555679853	638	True	935	935	93.125	1	637	1	chr3A.!!$R1	636
13	TraesCS4B01G231600	chr2B	757927324	757927961	637	False	872	872	91.393	1	637	1	chr2B.!!$F3	636
14	TraesCS4B01G231600	chr2B	631370461	631371342	881	False	776	776	83.092	650	1519	1	chr2B.!!$F2	869
15	TraesCS4B01G231600	chr2A	676170504	676171385	881	False	765	765	82.851	650	1519	1	chr2A.!!$F1	869

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
481	488	0.03759	ACGTAGGCAAGAAATGGGCA	59.962	50.0	0.0	0.0	0.0	5.36	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2429	2661	0.609151	TTCAGGCGACGGGTTTATCA	59.391	50.0	0.0	0.0	0.0	2.15	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
298	300	3.429141	ATGGTCGTCGTCGCTCGT	61.429	61.111	0.00	0.00	40.80	4.18
434	440	8.040716	AGGACTCGTTTGTAAATTTGGAATAG	57.959	34.615	0.00	0.00	0.00	1.73
481	488	0.037590	ACGTAGGCAAGAAATGGGCA	59.962	50.000	0.00	0.00	0.00	5.36
482	489	1.340991	ACGTAGGCAAGAAATGGGCAT	60.341	47.619	0.00	0.00	0.00	4.40
695	702	4.799678	TGTTGTTTATGGTTTATGTGCCG	58.200	39.130	0.00	0.00	0.00	5.69
757	765	7.637709	CAATCCCTTGCAAAACTAAGTTTAC	57.362	36.000	0.00	0.00	34.43	2.01
779	788	1.139058	ACATAATGGTCCCTGAGCGAC	59.861	52.381	0.00	0.00	32.15	5.19
783	792	0.467474	ATGGTCCCTGAGCGACGATA	60.467	55.000	0.00	0.00	32.15	2.92
784	793	1.101635	TGGTCCCTGAGCGACGATAG	61.102	60.000	0.00	0.00	35.72	2.08
785	794	1.008309	GTCCCTGAGCGACGATAGC	60.008	63.158	0.00	0.00	42.67	2.97
788	797	0.881796	CCCTGAGCGACGATAGCATA	59.118	55.000	0.00	0.00	42.67	3.14
792	801	2.218603	TGAGCGACGATAGCATAGACA	58.781	47.619	0.00	0.00	42.67	3.41
804	813	7.363530	ACGATAGCATAGACAAGGAGTTTGTTA	60.364	37.037	0.00	0.00	45.81	2.41
830	842	8.034804	AGTTTGTTTGGGAAATTATGCAGATAC	58.965	33.333	0.00	0.00	0.00	2.24
837	849	7.715657	TGGGAAATTATGCAGATACATTGTTC	58.284	34.615	0.00	0.00	0.00	3.18
843	855	7.776933	TTATGCAGATACATTGTTCAGACTC	57.223	36.000	0.00	0.00	0.00	3.36
847	859	5.583854	GCAGATACATTGTTCAGACTCACAT	59.416	40.000	0.00	0.00	0.00	3.21
848	860	6.758416	GCAGATACATTGTTCAGACTCACATA	59.242	38.462	0.00	0.00	0.00	2.29
849	861	7.254252	GCAGATACATTGTTCAGACTCACATAC	60.254	40.741	0.00	0.00	0.00	2.39
850	862	7.978414	CAGATACATTGTTCAGACTCACATACT	59.022	37.037	0.00	0.00	0.00	2.12
851	863	7.978414	AGATACATTGTTCAGACTCACATACTG	59.022	37.037	0.00	0.00	0.00	2.74
852	864	5.858381	ACATTGTTCAGACTCACATACTGT	58.142	37.500	0.00	0.00	33.93	3.55
853	865	5.928839	ACATTGTTCAGACTCACATACTGTC	59.071	40.000	0.00	0.00	33.93	3.51
854	866	4.521130	TGTTCAGACTCACATACTGTCC	57.479	45.455	0.00	0.00	33.93	4.02
855	867	4.152647	TGTTCAGACTCACATACTGTCCT	58.847	43.478	0.00	0.00	33.93	3.85
856	868	5.321927	TGTTCAGACTCACATACTGTCCTA	58.678	41.667	0.00	0.00	33.93	2.94
857	869	5.416013	TGTTCAGACTCACATACTGTCCTAG	59.584	44.000	0.00	0.00	33.93	3.02
878	908	6.307077	CCTAGCCTAATTTTGTTTTGCGTTAC	59.693	38.462	0.00	0.00	0.00	2.50
881	911	5.611628	GCCTAATTTTGTTTTGCGTTACTGC	60.612	40.000	0.00	0.00	0.00	4.40
882	912	4.787381	AATTTTGTTTTGCGTTACTGCC	57.213	36.364	0.00	0.00	0.00	4.85
902	932	2.417924	CCGAGTCCCAGATCTCAAACTG	60.418	54.545	0.00	0.00	0.00	3.16
1035	1100	3.621268	CACCAACTTCGAAGTTCTTGACA	59.379	43.478	34.72	0.00	45.65	3.58
1045	1110	5.856986	TCGAAGTTCTTGACATCTTACGAAG	59.143	40.000	0.56	0.00	0.00	3.79
1064	1129	4.272504	CGAAGTAGAGGTGCAAAAACTGAA	59.727	41.667	0.00	0.00	0.00	3.02
1148	1213	3.144657	TGCTTGATCCAATCTGTGTGT	57.855	42.857	0.00	0.00	0.00	3.72
1165	1232	3.684788	GTGTGTTCGATAGCCTGTTGATT	59.315	43.478	0.00	0.00	0.00	2.57
1211	1280	5.491070	ACTGCTCTCATGTTTATTGCTGTA	58.509	37.500	0.00	0.00	31.41	2.74
1270	1339	1.691434	TGCAACCAAACAAGGGAATCC	59.309	47.619	0.00	0.00	0.00	3.01
1379	1448	3.944650	TGCTGATGTTTATGCGGTATTGT	59.055	39.130	0.00	0.00	0.00	2.71
1407	1477	8.054152	TGTTTATTTGCTGATCTTAAGATGCA	57.946	30.769	22.61	21.53	34.37	3.96
1413	1483	5.359756	TGCTGATCTTAAGATGCACGTTAT	58.640	37.500	22.61	0.00	34.37	1.89
1450	1532	3.825328	AGCTGAGACAAACCAAGACATT	58.175	40.909	0.00	0.00	0.00	2.71
1501	1583	8.168790	TGTGAGATCTTGAAATGAAATTGTCA	57.831	30.769	0.00	0.00	41.67	3.58
1581	1666	0.401356	TTGGCAGCTGATTGTCTGGA	59.599	50.000	20.43	0.00	0.00	3.86
1588	1673	2.373169	AGCTGATTGTCTGGACTCCAAA	59.627	45.455	0.00	0.00	30.80	3.28
1613	1698	6.403866	TTTGGCAATTCAACAGAACACTAT	57.596	33.333	0.00	0.00	0.00	2.12
1784	1870	5.308497	TGTTTATTGTTGAGTACTCCCTCCA	59.692	40.000	20.11	8.35	0.00	3.86
1833	1930	3.068307	CGGATGGAGGGAGTACTAAACTG	59.932	52.174	0.00	0.00	39.07	3.16
1920	2017	3.395941	AGGAGTGTGGGAAAAGATTCAGT	59.604	43.478	0.00	0.00	37.29	3.41
1944	2041	1.578215	ATGAGCAAGGAGGGGCACAT	61.578	55.000	0.00	0.00	36.67	3.21
2126	2357	4.994852	GCATATATTTTGTAGTGCCGAGGA	59.005	41.667	0.00	0.00	0.00	3.71
2358	2589	2.942376	CGCAGTGGCTTAATTATCACCA	59.058	45.455	9.21	4.68	38.10	4.17
2407	2639	2.609916	GAGAAAGATAGGCAACGGAAGC	59.390	50.000	0.00	0.00	46.39	3.86
2429	2661	1.651987	CGGTTGAGTATGCAATCCGT	58.348	50.000	0.00	0.00	37.51	4.69
2462	2694	1.654954	CCTGAAGCATGTGAGGCAGC	61.655	60.000	0.00	0.00	0.00	5.25
2466	2698	2.295885	GAAGCATGTGAGGCAGCTAAT	58.704	47.619	0.00	0.00	36.07	1.73
2547	2784	4.336433	CCTAACCAAATGCAGTATGGAGTG	59.664	45.833	18.88	9.37	42.42	3.51
2567	2804	6.079712	AGTGGTATCCCTAAAGCTCAAATT	57.920	37.500	0.00	0.00	0.00	1.82
2579	2816	9.565213	CCTAAAGCTCAAATTCACTCAAAATAG	57.435	33.333	0.00	0.00	0.00	1.73
2582	2819	9.688592	AAAGCTCAAATTCACTCAAAATAGAAG	57.311	29.630	0.00	0.00	0.00	2.85
2583	2820	8.401490	AGCTCAAATTCACTCAAAATAGAAGT	57.599	30.769	0.00	0.00	0.00	3.01
2584	2821	9.507329	AGCTCAAATTCACTCAAAATAGAAGTA	57.493	29.630	0.00	0.00	0.00	2.24
2604	2841	8.470805	AGAAGTAATATCCAGTGTGTAGTTCTG	58.529	37.037	0.00	0.00	32.60	3.02
2628	2878	2.166254	CCAAACAAACACTGGCAACTCT	59.834	45.455	0.00	0.00	37.61	3.24
2707	2959	5.643777	TCCAGATAAAAGCACTTCTTAGCAC	59.356	40.000	0.00	0.00	33.88	4.40
2716	2968	3.005791	GCACTTCTTAGCACCACCATTTT	59.994	43.478	0.00	0.00	0.00	1.82
2732	2984	9.425248	ACCACCATTTTTCATAATGAGATGTAT	57.575	29.630	0.00	0.00	37.65	2.29
2747	2999	6.743110	TGAGATGTATAGTCTCACATTGAGC	58.257	40.000	11.79	0.00	45.19	4.26
2770	3022	5.175673	GCATCTCCGGTTTTGAAAAAGAAAG	59.824	40.000	0.00	0.00	0.00	2.62
2790	3042	8.519526	AAGAAAGATCTACAGAGTTACAGTCTG	58.480	37.037	0.00	6.99	41.92	3.51
2986	3238	1.808411	CTGTGAATACCGGCACAAGT	58.192	50.000	12.76	0.00	43.65	3.16
3016	3268	7.493645	AGGATAAACGAACTAAGGTAATTTCCG	59.506	37.037	0.00	0.00	0.00	4.30

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
39	40	1.078497	CTCTACATTGGCCACCGCA	60.078	57.895	3.88	0.00	36.38	5.69
434	440	1.089920	ATTTCGTGCCAGATCAGTGC	58.910	50.000	0.00	0.00	0.00	4.40
481	488	7.360101	GCGTTAAGTGAGTTTATGACAGTTGAT	60.360	37.037	0.00	0.00	0.00	2.57
482	489	6.073980	GCGTTAAGTGAGTTTATGACAGTTGA	60.074	38.462	0.00	0.00	0.00	3.18
688	695	2.936498	GCTACAAGATTGTACGGCACAT	59.064	45.455	10.44	0.00	42.35	3.21
695	702	4.822026	AGTGTGGAGCTACAAGATTGTAC	58.178	43.478	0.00	0.00	42.35	2.90
757	765	2.628178	TCGCTCAGGGACCATTATGTAG	59.372	50.000	0.00	0.00	0.00	2.74
779	788	5.352284	ACAAACTCCTTGTCTATGCTATCG	58.648	41.667	0.00	0.00	45.50	2.92
792	801	5.717654	TCCCAAACAAACTAACAAACTCCTT	59.282	36.000	0.00	0.00	0.00	3.36
804	813	6.418057	TCTGCATAATTTCCCAAACAAACT	57.582	33.333	0.00	0.00	0.00	2.66
810	822	8.076910	ACAATGTATCTGCATAATTTCCCAAA	57.923	30.769	0.00	0.00	0.00	3.28
847	859	7.308951	GCAAAACAAAATTAGGCTAGGACAGTA	60.309	37.037	0.00	0.00	0.00	2.74
848	860	6.516693	GCAAAACAAAATTAGGCTAGGACAGT	60.517	38.462	0.00	0.00	0.00	3.55
849	861	5.863935	GCAAAACAAAATTAGGCTAGGACAG	59.136	40.000	0.00	0.00	0.00	3.51
850	862	5.563867	CGCAAAACAAAATTAGGCTAGGACA	60.564	40.000	0.00	0.00	0.00	4.02
851	863	4.857037	CGCAAAACAAAATTAGGCTAGGAC	59.143	41.667	0.00	0.00	0.00	3.85
852	864	4.521256	ACGCAAAACAAAATTAGGCTAGGA	59.479	37.500	0.00	0.00	0.00	2.94
853	865	4.805219	ACGCAAAACAAAATTAGGCTAGG	58.195	39.130	0.00	0.00	0.00	3.02
854	866	7.060633	CAGTAACGCAAAACAAAATTAGGCTAG	59.939	37.037	0.00	0.00	0.00	3.42
855	867	6.858993	CAGTAACGCAAAACAAAATTAGGCTA	59.141	34.615	0.00	0.00	0.00	3.93
856	868	5.689961	CAGTAACGCAAAACAAAATTAGGCT	59.310	36.000	0.00	0.00	0.00	4.58
857	869	5.611628	GCAGTAACGCAAAACAAAATTAGGC	60.612	40.000	0.00	0.00	0.00	3.93
878	908	1.039785	TGAGATCTGGGACTCGGCAG	61.040	60.000	0.00	0.00	36.11	4.85
881	911	1.827969	AGTTTGAGATCTGGGACTCGG	59.172	52.381	0.00	0.00	36.11	4.63
882	912	2.417924	CCAGTTTGAGATCTGGGACTCG	60.418	54.545	0.00	0.00	45.11	4.18
908	938	9.935682	CGAGCTTTTAAATTATTCAGCATCTAA	57.064	29.630	9.36	0.00	0.00	2.10
1045	1110	3.004419	GGGTTCAGTTTTTGCACCTCTAC	59.996	47.826	0.00	0.00	42.10	2.59
1084	1149	0.168348	CACTCTGATGCAGCAACAGC	59.832	55.000	24.32	4.62	34.87	4.40
1148	1213	3.186909	CACGAATCAACAGGCTATCGAA	58.813	45.455	0.00	0.00	34.62	3.71
1182	1251	8.526147	AGCAATAAACATGAGAGCAGTTTAATT	58.474	29.630	0.00	0.00	40.04	1.40
1183	1252	7.972277	CAGCAATAAACATGAGAGCAGTTTAAT	59.028	33.333	0.00	0.00	40.04	1.40
1270	1339	5.914635	ACATCTGTTTGCAAATTCAGTAACG	59.085	36.000	22.20	14.38	32.59	3.18
1422	1492	4.002906	TGGTTTGTCTCAGCTAACGAAT	57.997	40.909	0.00	0.00	0.00	3.34
1455	1537	8.786826	TCACAAATGGTCCAAAGTATTACTAG	57.213	34.615	0.00	0.00	0.00	2.57
1501	1583	5.067023	GCAGGCTCTAAATTCTGTAGCAAAT	59.933	40.000	0.00	0.00	34.85	2.32
1512	1595	3.259123	CCAAACCAAGCAGGCTCTAAATT	59.741	43.478	0.00	0.00	43.14	1.82
1558	1643	3.306502	CCAGACAATCAGCTGCCAATTTT	60.307	43.478	9.47	0.00	0.00	1.82
1559	1644	2.232941	CCAGACAATCAGCTGCCAATTT	59.767	45.455	9.47	0.00	0.00	1.82
1560	1645	1.822990	CCAGACAATCAGCTGCCAATT	59.177	47.619	9.47	0.42	0.00	2.32
1588	1673	5.673514	AGTGTTCTGTTGAATTGCCAAAAT	58.326	33.333	0.00	0.00	34.40	1.82
1604	1689	7.335422	CCAATAGAGCAACTTTGATAGTGTTCT	59.665	37.037	0.00	0.00	37.12	3.01
1613	1698	3.153369	TGGCCAATAGAGCAACTTTGA	57.847	42.857	0.61	0.00	0.00	2.69
1678	1764	6.472808	ACAAAATTTTGAAACATGCACATTGC	59.527	30.769	32.20	0.00	41.29	3.56
1756	1842	7.458397	AGGGAGTACTCAACAATAAACATTCA	58.542	34.615	23.91	0.00	0.00	2.57
1768	1854	1.409427	CGGATGGAGGGAGTACTCAAC	59.591	57.143	23.91	15.68	39.27	3.18
1803	1900	1.000955	CTCCCTCCATCCGGAAATACG	59.999	57.143	9.01	0.00	42.21	3.06
1920	2017	1.511613	CCCCTCCTTGCTCATCCTTA	58.488	55.000	0.00	0.00	0.00	2.69
1944	2041	3.334691	CTTGGCACGTTCCTCTTCATTA	58.665	45.455	5.66	0.00	0.00	1.90
2108	2338	2.235155	TGCTCCTCGGCACTACAAAATA	59.765	45.455	0.00	0.00	37.29	1.40
2120	2350	2.690497	TCTCAAACTAGATGCTCCTCGG	59.310	50.000	0.00	0.00	0.00	4.63
2121	2351	3.129462	TGTCTCAAACTAGATGCTCCTCG	59.871	47.826	0.00	0.00	0.00	4.63
2126	2357	5.104610	ACATGGATGTCTCAAACTAGATGCT	60.105	40.000	0.00	0.00	35.87	3.79
2343	2574	2.224314	GCGAGCTGGTGATAATTAAGCC	59.776	50.000	0.00	0.70	34.35	4.35
2358	2589	1.963338	GTTTGTGAGGCAGCGAGCT	60.963	57.895	4.24	0.00	44.79	4.09
2429	2661	0.609151	TTCAGGCGACGGGTTTATCA	59.391	50.000	0.00	0.00	0.00	2.15
2466	2698	8.627403	GTGCACAGGTAAACTATACAGTATAGA	58.373	37.037	27.76	8.56	40.43	1.98
2579	2816	8.251721	ACAGAACTACACACTGGATATTACTTC	58.748	37.037	0.00	0.00	36.17	3.01
2580	2817	8.035394	CACAGAACTACACACTGGATATTACTT	58.965	37.037	0.00	0.00	36.17	2.24
2581	2818	7.548097	CACAGAACTACACACTGGATATTACT	58.452	38.462	0.00	0.00	36.17	2.24
2582	2819	6.255887	GCACAGAACTACACACTGGATATTAC	59.744	42.308	0.00	0.00	36.17	1.89
2583	2820	6.338146	GCACAGAACTACACACTGGATATTA	58.662	40.000	0.00	0.00	36.17	0.98
2584	2821	5.178797	GCACAGAACTACACACTGGATATT	58.821	41.667	0.00	0.00	36.17	1.28
2585	2822	4.383118	GGCACAGAACTACACACTGGATAT	60.383	45.833	0.00	0.00	36.17	1.63
2586	2823	3.056107	GGCACAGAACTACACACTGGATA	60.056	47.826	0.00	0.00	36.17	2.59
2587	2824	2.289694	GGCACAGAACTACACACTGGAT	60.290	50.000	0.00	0.00	36.17	3.41
2588	2825	1.070134	GGCACAGAACTACACACTGGA	59.930	52.381	0.00	0.00	36.17	3.86
2589	2826	1.202639	TGGCACAGAACTACACACTGG	60.203	52.381	0.00	0.00	36.17	4.00
2590	2827	2.238942	TGGCACAGAACTACACACTG	57.761	50.000	0.00	0.00	37.62	3.66
2591	2828	2.943033	GTTTGGCACAGAACTACACACT	59.057	45.455	0.00	0.00	42.39	3.55
2592	2829	2.680841	TGTTTGGCACAGAACTACACAC	59.319	45.455	2.57	0.00	42.39	3.82
2628	2878	9.555727	GTTACTTCTATATTACATGGCTCCAAA	57.444	33.333	0.00	0.00	0.00	3.28
2679	2931	8.082242	GCTAAGAAGTGCTTTTATCTGGAAAAA	58.918	33.333	0.00	0.00	38.05	1.94
2700	2952	7.546358	TCATTATGAAAAATGGTGGTGCTAAG	58.454	34.615	0.00	0.00	37.44	2.18
2704	2956	5.964758	TCTCATTATGAAAAATGGTGGTGC	58.035	37.500	0.00	0.00	37.44	5.01
2747	2999	6.503524	TCTTTCTTTTTCAAAACCGGAGATG	58.496	36.000	9.46	3.27	0.00	2.90
2770	3022	5.568685	TGCAGACTGTAACTCTGTAGATC	57.431	43.478	3.99	0.00	37.96	2.75
2790	3042	5.068987	TCCTTGACCTTGGCATTATAATTGC	59.931	40.000	0.00	3.60	0.00	3.56
2986	3238	9.729281	AATTACCTTAGTTCGTTTATCCTTTCA	57.271	29.630	0.00	0.00	0.00	2.69
3016	3268	0.931005	CGCTTCTTAACATCTCGGCC	59.069	55.000	0.00	0.00	0.00	6.13

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.