AutoCloner

Multiple sequence alignment - TraesCS4B01G231500

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BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G231500	chr4B	100.000	6943	0	0	1	6943	483507990	483514932	0.000000e+00	12822.0
1	TraesCS4B01G231500	chr4B	92.553	94	5	2	3730	3822	586248540	586248448	4.370000e-27	134.0
2	TraesCS4B01G231500	chr4B	87.654	81	9	1	2401	2481	530009211	530009290	7.410000e-15	93.5
3	TraesCS4B01G231500	chr4D	93.262	2538	117	19	3831	6360	393710992	393708501	0.000000e+00	3690.0
4	TraesCS4B01G231500	chr4D	95.144	659	23	7	2507	3157	393720260	393719603	0.000000e+00	1031.0
5	TraesCS4B01G231500	chr4D	96.684	573	19	0	6371	6943	393358512	393359084	0.000000e+00	953.0
6	TraesCS4B01G231500	chr4D	92.841	447	26	5	3274	3714	393719494	393719048	1.630000e-180	643.0
7	TraesCS4B01G231500	chr4D	84.406	699	32	30	814	1480	393721536	393720883	3.560000e-172	616.0
8	TraesCS4B01G231500	chr4D	83.654	624	94	7	46	665	8133792	8133173	1.300000e-161	580.0
9	TraesCS4B01G231500	chr4D	91.736	363	15	3	1640	1987	393720888	393720526	2.250000e-134	490.0
10	TraesCS4B01G231500	chr4D	78.333	480	73	19	60	522	439701824	439701359	1.470000e-71	281.0
11	TraesCS4B01G231500	chr4D	93.694	111	4	1	3142	3252	393719584	393719477	5.570000e-36	163.0
12	TraesCS4B01G231500	chr4D	94.382	89	5	0	3735	3823	64347361	64347449	3.380000e-28	137.0
13	TraesCS4B01G231500	chr4D	94.444	90	4	1	3731	3819	320593824	320593735	3.380000e-28	137.0
14	TraesCS4B01G231500	chr4D	89.320	103	8	3	3727	3826	320593724	320593826	7.310000e-25	126.0
15	TraesCS4B01G231500	chr4A	92.652	1674	93	11	5006	6671	75257456	75259107	0.000000e+00	2383.0
16	TraesCS4B01G231500	chr4A	96.082	1021	32	8	4091	5108	75256475	75257490	0.000000e+00	1657.0
17	TraesCS4B01G231500	chr4A	93.910	312	19	0	3356	3667	75256179	75256490	8.150000e-129	472.0
18	TraesCS4B01G231500	chr4A	96.324	272	10	0	6669	6940	75259238	75259509	1.370000e-121	448.0
19	TraesCS4B01G231500	chr4A	84.440	482	32	23	888	1341	75247066	75247532	1.070000e-117	435.0
20	TraesCS4B01G231500	chr4A	86.528	386	29	6	1646	2008	75247673	75248058	3.020000e-108	403.0
21	TraesCS4B01G231500	chr4A	83.041	342	42	10	2914	3252	75255804	75256132	5.270000e-76	296.0
22	TraesCS4B01G231500	chr4A	90.789	152	13	1	2189	2339	460230648	460230799	1.180000e-47	202.0
23	TraesCS4B01G231500	chr4A	91.919	99	6	2	3735	3831	682798972	682798874	3.380000e-28	137.0
24	TraesCS4B01G231500	chr4A	93.478	92	6	0	3735	3826	736987873	736987782	3.380000e-28	137.0
25	TraesCS4B01G231500	chr4A	93.478	92	6	0	3735	3826	737015442	737015351	3.380000e-28	137.0
26	TraesCS4B01G231500	chr4A	85.185	54	4	3	2377	2428	698264134	698264185	1.300000e-02	52.8
27	TraesCS4B01G231500	chr7D	90.849	907	83	0	5059	5965	617079982	617079076	0.000000e+00	1216.0
28	TraesCS4B01G231500	chr7D	84.803	1145	137	22	3893	5007	617081127	617079990	0.000000e+00	1116.0
29	TraesCS4B01G231500	chr7D	86.623	456	46	9	3275	3721	617081641	617081192	2.250000e-134	490.0
30	TraesCS4B01G231500	chr7D	92.391	92	7	0	3735	3826	270505959	270505868	1.570000e-26	132.0
31	TraesCS4B01G231500	chr7D	86.607	112	11	4	3729	3839	87228029	87228137	3.400000e-23	121.0
32	TraesCS4B01G231500	chr7A	90.518	907	86	0	5059	5965	709809862	709808956	0.000000e+00	1199.0
33	TraesCS4B01G231500	chr7A	84.629	1145	137	25	3893	5007	709811005	709809870	0.000000e+00	1103.0
34	TraesCS4B01G231500	chr7A	87.500	392	46	3	3275	3665	709812281	709811892	3.820000e-122	449.0
35	TraesCS4B01G231500	chr7A	96.000	175	7	0	1478	1652	493942301	493942127	1.140000e-72	285.0
36	TraesCS4B01G231500	chr7A	92.784	97	6	1	3734	3829	581850993	581850897	9.390000e-29	139.0
37	TraesCS4B01G231500	chr2B	86.897	954	108	13	4063	5007	90344	91289	0.000000e+00	1053.0
38	TraesCS4B01G231500	chr2B	90.714	560	52	0	5397	5956	91573	92132	0.000000e+00	747.0
39	TraesCS4B01G231500	chr2B	85.651	453	53	7	3278	3721	87669	88118	3.790000e-127	466.0
40	TraesCS4B01G231500	chr2B	79.161	715	117	18	1	686	11220315	11219604	3.790000e-127	466.0
41	TraesCS4B01G231500	chr2B	91.209	273	23	1	5059	5331	91297	91568	3.060000e-98	370.0
42	TraesCS4B01G231500	chr2B	97.059	170	5	0	1475	1644	357152327	357152496	3.170000e-73	287.0
43	TraesCS4B01G231500	chr2B	82.482	274	38	5	2914	3184	86786	87052	1.510000e-56	231.0
44	TraesCS4B01G231500	chr2B	90.604	149	13	1	2192	2339	190023041	190022893	5.490000e-46	196.0
45	TraesCS4B01G231500	chr2B	93.617	94	5	1	3730	3823	28631625	28631533	9.390000e-29	139.0
46	TraesCS4B01G231500	chr6A	83.133	664	103	8	46	703	610789848	610789188	1.290000e-166	597.0
47	TraesCS4B01G231500	chr6A	89.796	147	14	1	2194	2339	538097683	538097829	3.310000e-43	187.0
48	TraesCS4B01G231500	chr6A	93.478	92	6	0	3735	3826	148527200	148527109	3.380000e-28	137.0
49	TraesCS4B01G231500	chr6A	93.333	90	6	0	3731	3820	349779824	349779913	4.370000e-27	134.0
50	TraesCS4B01G231500	chr6A	92.391	92	7	0	3735	3826	407093153	407093062	1.570000e-26	132.0
51	TraesCS4B01G231500	chr6D	83.912	634	89	3	1	625	308782944	308782315	1.670000e-165	593.0
52	TraesCS4B01G231500	chr6D	89.933	149	14	1	2192	2339	392273076	392273224	2.560000e-44	191.0
53	TraesCS4B01G231500	chr6D	91.209	91	8	0	3730	3820	443958609	443958519	2.630000e-24	124.0
54	TraesCS4B01G231500	chr6D	91.954	87	6	1	3735	3820	462439582	462439496	3.400000e-23	121.0
55	TraesCS4B01G231500	chr6D	91.011	89	7	1	3735	3822	34809007	34808919	1.220000e-22	119.0
56	TraesCS4B01G231500	chr6D	89.247	93	10	0	3728	3820	316625862	316625954	4.400000e-22	117.0
57	TraesCS4B01G231500	chr6D	90.588	85	8	0	3735	3819	3377964	3378048	5.690000e-21	113.0
58	TraesCS4B01G231500	chr6D	87.129	101	11	2	3723	3822	422026900	422026999	5.690000e-21	113.0
59	TraesCS4B01G231500	chr6D	91.358	81	7	0	3734	3814	464971083	464971003	2.050000e-20	111.0
60	TraesCS4B01G231500	chr6D	89.412	85	9	0	3735	3819	234694930	234694846	2.650000e-19	108.0
61	TraesCS4B01G231500	chr6D	89.412	85	9	0	3735	3819	431050442	431050526	2.650000e-19	108.0
62	TraesCS4B01G231500	chr6D	86.735	98	12	1	3726	3822	440409494	440409591	2.650000e-19	108.0
63	TraesCS4B01G231500	chr2A	82.011	706	111	9	1	694	765870653	765871354	2.790000e-163	586.0
64	TraesCS4B01G231500	chr2A	96.491	171	6	0	1472	1642	609646321	609646491	4.100000e-72	283.0
65	TraesCS4B01G231500	chr2A	90.604	149	13	1	2192	2339	141506468	141506320	5.490000e-46	196.0
66	TraesCS4B01G231500	chr2A	94.624	93	4	1	3735	3826	539325662	539325570	7.260000e-30	143.0
67	TraesCS4B01G231500	chr2A	91.398	93	6	2	2402	2494	125206094	125206184	7.310000e-25	126.0
68	TraesCS4B01G231500	chr2A	88.889	81	9	0	2401	2481	125206174	125206094	4.430000e-17	100.0
69	TraesCS4B01G231500	chr2A	85.938	64	8	1	2438	2500	711546605	711546668	4.490000e-07	67.6
70	TraesCS4B01G231500	chr5B	82.870	648	103	7	47	689	590241805	590241161	6.040000e-160	575.0
71	TraesCS4B01G231500	chr5B	94.944	178	9	0	1471	1648	656461946	656461769	5.300000e-71	279.0
72	TraesCS4B01G231500	chr5B	83.077	65	7	4	2453	2517	65773603	65773543	1.000000e-03	56.5
73	TraesCS4B01G231500	chr3D	81.276	721	111	16	1	703	576318572	576319286	4.700000e-156	562.0
74	TraesCS4B01G231500	chr3D	79.248	612	117	10	62	667	495217750	495217143	1.080000e-112	418.0
75	TraesCS4B01G231500	chr3D	78.547	578	108	10	61	625	598071464	598072038	3.960000e-97	366.0
76	TraesCS4B01G231500	chr3D	92.617	149	10	1	2192	2339	322435294	322435442	5.460000e-51	213.0
77	TraesCS4B01G231500	chr3D	95.294	85	4	0	3735	3819	406162505	406162589	1.210000e-27	135.0
78	TraesCS4B01G231500	chr3D	93.258	89	6	0	3734	3822	560936473	560936385	1.570000e-26	132.0
79	TraesCS4B01G231500	chr3D	93.182	88	6	0	3735	3822	144072022	144071935	5.650000e-26	130.0
80	TraesCS4B01G231500	chr3D	93.258	89	5	1	3735	3822	400683943	400684031	5.650000e-26	130.0
81	TraesCS4B01G231500	chr3D	94.118	85	5	0	3735	3819	481970959	481970875	5.650000e-26	130.0
82	TraesCS4B01G231500	chr3D	90.426	94	9	0	3726	3819	51118672	51118765	2.630000e-24	124.0
83	TraesCS4B01G231500	chr3D	87.273	110	11	3	3727	3833	124616849	124616740	9.460000e-24	122.0
84	TraesCS4B01G231500	chr7B	82.148	661	102	14	51	703	592179540	592180192	2.830000e-153	553.0
85	TraesCS4B01G231500	chr7B	94.444	90	5	0	3730	3819	740996151	740996240	9.390000e-29	139.0
86	TraesCS4B01G231500	chr7B	88.136	59	3	3	2455	2510	23655453	23655510	4.490000e-07	67.6
87	TraesCS4B01G231500	chr7B	89.286	56	3	3	2451	2505	428838024	428838077	4.490000e-07	67.6
88	TraesCS4B01G231500	chr7B	86.154	65	5	4	2387	2449	493529184	493529122	4.490000e-07	67.6
89	TraesCS4B01G231500	chr3B	81.639	659	107	13	46	697	20748070	20747419	1.030000e-147	534.0
90	TraesCS4B01G231500	chr3B	97.041	169	5	0	1473	1641	821839955	821840123	1.140000e-72	285.0
91	TraesCS4B01G231500	chr3B	92.617	149	10	1	2192	2339	396271881	396272029	5.460000e-51	213.0
92	TraesCS4B01G231500	chr3B	94.505	91	5	0	3729	3819	551513882	551513972	2.610000e-29	141.0
93	TraesCS4B01G231500	chr3B	93.478	92	6	0	3732	3823	554699837	554699746	3.380000e-28	137.0
94	TraesCS4B01G231500	chr3B	92.632	95	5	2	3735	3828	53239889	53239796	1.210000e-27	135.0
95	TraesCS4B01G231500	chr3B	87.952	83	8	1	2401	2481	173115964	173116046	5.730000e-16	97.1
96	TraesCS4B01G231500	chr3B	87.805	82	7	2	2398	2479	702846726	702846804	7.410000e-15	93.5
97	TraesCS4B01G231500	chr3B	91.667	48	2	2	2451	2497	790719148	790719194	1.620000e-06	65.8
98	TraesCS4B01G231500	chr5A	81.385	650	108	13	47	689	451255940	451255297	1.030000e-142	518.0
99	TraesCS4B01G231500	chr5A	95.455	176	7	1	1474	1649	361454797	361454623	5.300000e-71	279.0
100	TraesCS4B01G231500	chr5A	94.915	177	8	1	1478	1653	703668361	703668185	6.860000e-70	276.0
101	TraesCS4B01G231500	chr5A	88.889	153	15	2	2188	2339	35260375	35260224	3.310000e-43	187.0
102	TraesCS4B01G231500	chr5D	79.888	716	105	14	1	703	373953944	373954633	8.090000e-134	488.0
103	TraesCS4B01G231500	chr5D	76.569	717	121	17	1	686	470050763	470050063	3.990000e-92	350.0
104	TraesCS4B01G231500	chr5D	94.318	88	5	0	3735	3822	452219481	452219394	1.210000e-27	135.0
105	TraesCS4B01G231500	chr5D	91.358	81	6	1	2402	2481	413492680	413492600	7.360000e-20	110.0
106	TraesCS4B01G231500	chr5D	87.059	85	9	2	2398	2481	413492597	413492680	2.060000e-15	95.3
107	TraesCS4B01G231500	chr5D	86.047	86	10	1	2402	2487	352731625	352731542	2.670000e-14	91.6
108	TraesCS4B01G231500	chr2D	80.122	654	100	12	1	627	8476017	8475367	1.760000e-125	460.0
109	TraesCS4B01G231500	chr2D	90.385	104	8	2	3731	3833	10985440	10985542	1.210000e-27	135.0
110	TraesCS4B01G231500	chr2D	91.667	96	8	0	3735	3830	490677428	490677523	4.370000e-27	134.0
111	TraesCS4B01G231500	chr1A	96.491	171	6	0	1478	1648	219372628	219372798	4.100000e-72	283.0
112	TraesCS4B01G231500	chr1A	93.333	90	6	0	3731	3820	527084019	527083930	4.370000e-27	134.0
113	TraesCS4B01G231500	chr1A	90.099	101	8	2	3729	3827	464797002	464796902	5.650000e-26	130.0
114	TraesCS4B01G231500	chr1A	88.571	105	10	2	3731	3835	563757862	563757760	7.310000e-25	126.0
115	TraesCS4B01G231500	chr1A	90.000	50	4	1	2451	2499	396102685	396102636	5.810000e-06	63.9
116	TraesCS4B01G231500	chr3A	94.118	187	7	4	1471	1657	80489272	80489090	1.470000e-71	281.0
117	TraesCS4B01G231500	chr3A	87.879	165	16	3	2178	2338	602017717	602017881	2.560000e-44	191.0
118	TraesCS4B01G231500	chr3A	97.674	43	1	0	1	43	60835913	60835871	2.690000e-09	75.0
119	TraesCS4B01G231500	chr1B	94.444	90	5	0	3731	3820	466926247	466926158	9.390000e-29	139.0
120	TraesCS4B01G231500	chr1B	86.905	84	4	4	2402	2485	162082355	162082279	3.450000e-13	87.9
121	TraesCS4B01G231500	chr1B	81.944	72	7	5	2450	2516	632159414	632159344	1.000000e-03	56.5
122	TraesCS4B01G231500	chrUn	94.382	89	5	0	3735	3823	362464954	362465042	3.380000e-28	137.0
123	TraesCS4B01G231500	chrUn	92.308	91	6	1	3733	3822	202630607	202630517	2.030000e-25	128.0
124	TraesCS4B01G231500	chrUn	92.135	89	7	0	3732	3820	8111447	8111535	7.310000e-25	126.0
125	TraesCS4B01G231500	chrUn	91.209	91	7	1	3733	3822	361640287	361640197	9.460000e-24	122.0
126	TraesCS4B01G231500	chr1D	93.023	86	6	0	3735	3820	211494670	211494755	7.310000e-25	126.0
127	TraesCS4B01G231500	chr1D	93.023	86	6	0	3735	3820	274944012	274943927	7.310000e-25	126.0
128	TraesCS4B01G231500	chr1D	92.941	85	6	0	3735	3819	87661036	87661120	2.630000e-24	124.0
129	TraesCS4B01G231500	chr1D	90.426	94	7	2	3735	3827	406665063	406664971	9.460000e-24	122.0
130	TraesCS4B01G231500	chr1D	97.674	43	1	0	1	43	362571724	362571766	2.690000e-09	75.0
131	TraesCS4B01G231500	chr6B	90.000	50	3	2	2451	2499	565636396	565636348	5.810000e-06	63.9
132	TraesCS4B01G231500	chr6B	85.246	61	7	2	2377	2436	222584619	222584560	2.090000e-05	62.1

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G231500	chr4B	483507990	483514932	6942	False	12822.000000	12822	100.0000	1	6943	1	chr4B.!!$F1	6942
1	TraesCS4B01G231500	chr4D	393708501	393710992	2491	True	3690.000000	3690	93.2620	3831	6360	1	chr4D.!!$R3	2529
2	TraesCS4B01G231500	chr4D	393358512	393359084	572	False	953.000000	953	96.6840	6371	6943	1	chr4D.!!$F3	572
3	TraesCS4B01G231500	chr4D	393719048	393721536	2488	True	588.600000	1031	91.5642	814	3714	5	chr4D.!!$R5	2900
4	TraesCS4B01G231500	chr4D	8133173	8133792	619	True	580.000000	580	83.6540	46	665	1	chr4D.!!$R1	619
5	TraesCS4B01G231500	chr4A	75255804	75259509	3705	False	1051.200000	2383	92.4018	2914	6940	5	chr4A.!!$F4	4026
6	TraesCS4B01G231500	chr4A	75247066	75248058	992	False	419.000000	435	85.4840	888	2008	2	chr4A.!!$F3	1120
7	TraesCS4B01G231500	chr7D	617079076	617081641	2565	True	940.666667	1216	87.4250	3275	5965	3	chr7D.!!$R2	2690
8	TraesCS4B01G231500	chr7A	709808956	709812281	3325	True	917.000000	1199	87.5490	3275	5965	3	chr7A.!!$R3	2690
9	TraesCS4B01G231500	chr2B	86786	92132	5346	False	573.400000	1053	87.3906	2914	5956	5	chr2B.!!$F2	3042
10	TraesCS4B01G231500	chr2B	11219604	11220315	711	True	466.000000	466	79.1610	1	686	1	chr2B.!!$R1	685
11	TraesCS4B01G231500	chr6A	610789188	610789848	660	True	597.000000	597	83.1330	46	703	1	chr6A.!!$R3	657
12	TraesCS4B01G231500	chr6D	308782315	308782944	629	True	593.000000	593	83.9120	1	625	1	chr6D.!!$R3	624
13	TraesCS4B01G231500	chr2A	765870653	765871354	701	False	586.000000	586	82.0110	1	694	1	chr2A.!!$F4	693
14	TraesCS4B01G231500	chr5B	590241161	590241805	644	True	575.000000	575	82.8700	47	689	1	chr5B.!!$R2	642
15	TraesCS4B01G231500	chr3D	576318572	576319286	714	False	562.000000	562	81.2760	1	703	1	chr3D.!!$F5	702
16	TraesCS4B01G231500	chr3D	495217143	495217750	607	True	418.000000	418	79.2480	62	667	1	chr3D.!!$R4	605
17	TraesCS4B01G231500	chr3D	598071464	598072038	574	False	366.000000	366	78.5470	61	625	1	chr3D.!!$F6	564
18	TraesCS4B01G231500	chr7B	592179540	592180192	652	False	553.000000	553	82.1480	51	703	1	chr7B.!!$F3	652
19	TraesCS4B01G231500	chr3B	20747419	20748070	651	True	534.000000	534	81.6390	46	697	1	chr3B.!!$R1	651
20	TraesCS4B01G231500	chr5A	451255297	451255940	643	True	518.000000	518	81.3850	47	689	1	chr5A.!!$R3	642
21	TraesCS4B01G231500	chr5D	373953944	373954633	689	False	488.000000	488	79.8880	1	703	1	chr5D.!!$F1	702
22	TraesCS4B01G231500	chr5D	470050063	470050763	700	True	350.000000	350	76.5690	1	686	1	chr5D.!!$R4	685
23	TraesCS4B01G231500	chr2D	8475367	8476017	650	True	460.000000	460	80.1220	1	627	1	chr2D.!!$R1	626

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
738	801	0.034670	AAGCCTCTGCCAACTGGATC	60.035	55.0	0.00	0.00	38.69	3.36	F
2420	2665	0.032813	TACTCCCTCCGTCCGGAAAT	60.033	55.0	5.23	0.00	44.66	2.17	F
2421	2666	0.032813	ACTCCCTCCGTCCGGAAATA	60.033	55.0	5.23	0.00	44.66	1.40	F
2477	2722	0.032813	AGTATTTCCGGACGGAGGGA	60.033	55.0	13.64	4.95	46.06	4.20	F
2480	2725	0.032813	ATTTCCGGACGGAGGGAGTA	60.033	55.0	13.64	0.00	46.06	2.59	F
2484	2729	0.107017	CCGGACGGAGGGAGTACTTA	60.107	60.0	4.40	0.00	37.50	2.24	F
3867	5372	0.175760	ACGATGCGAATGCCACTAGT	59.824	50.0	0.00	0.00	41.78	2.57	F
4256	7743	0.962489	ATAATCTCAGCCGGTCCTCG	59.038	55.0	1.90	0.00	38.88	4.63	F
4525	8012	1.826385	CTGGCTCTGGGGTTTTACAG	58.174	55.0	0.00	0.00	36.07	2.74	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2401	2646	0.032813	ATTTCCGGACGGAGGGAGTA	60.033	55.000	13.64	0.00	46.06	2.59	R
4237	7724	0.962489	CGAGGACCGGCTGAGATTAT	59.038	55.000	0.00	0.00	33.91	1.28	R
4256	7743	2.038557	TCTACCCAAAGAGTCCAAGCAC	59.961	50.000	0.00	0.00	0.00	4.40	R
4392	7879	3.510459	TCTGGTCTTCTCCACTTCATCA	58.490	45.455	0.00	0.00	33.55	3.07	R
4896	8387	6.172630	GTGCAATATTGTTTCCCCTTTTCAT	58.827	36.000	16.61	0.00	0.00	2.57	R
4934	8426	6.039717	GCACATCCATTTGTACCAACATAGAT	59.960	38.462	0.00	0.00	34.97	1.98	R
5584	9146	0.379669	GATGCTCATTGGAACAGCCG	59.620	55.000	0.00	0.00	42.39	5.52	R
5681	9243	1.064946	GGCGTCTGGAGACTCATCG	59.935	63.158	4.53	4.42	42.66	3.84	R
6816	10524	1.578215	ATGAGCAAGGAGGGGCACAT	61.578	55.000	0.00	0.00	36.67	3.21	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	61	3.393970	CTTCCTCCTCTGCGGCCA	61.394	66.667	2.24	0.00	0.00	5.36
89	113	2.808206	CGGCGGCCCTTATCCTCTT	61.808	63.158	14.55	0.00	0.00	2.85
94	118	1.762957	CGGCCCTTATCCTCTTCTTCA	59.237	52.381	0.00	0.00	0.00	3.02
99	123	3.447586	CCCTTATCCTCTTCTTCACACGA	59.552	47.826	0.00	0.00	0.00	4.35
223	248	4.082523	CGCCCGGTGAGTGGACAT	62.083	66.667	0.00	0.00	0.00	3.06
281	307	4.689549	TTGTCCTCCCGGGAGCGA	62.690	66.667	40.60	33.60	46.10	4.93
319	345	1.750399	CCATTGCCTCCTCCAACCG	60.750	63.158	0.00	0.00	0.00	4.44
427	463	2.680352	ATGAGCTCGGGTGACGGT	60.680	61.111	9.64	0.00	44.45	4.83
456	503	4.282703	GTGGAGTGAAGTGACTAGGGTTTA	59.717	45.833	0.00	0.00	0.00	2.01
470	517	0.387750	GGTTTACTCCGACGAGCGTT	60.388	55.000	0.00	0.00	40.03	4.84
494	542	2.356330	GGGACGAACATAAATGGGGTCA	60.356	50.000	0.00	0.00	31.45	4.02
497	545	2.574369	ACGAACATAAATGGGGTCAGGA	59.426	45.455	0.00	0.00	0.00	3.86
523	571	3.777910	ATGGCCCGGGTACGACAC	61.778	66.667	24.63	2.30	44.60	3.67
563	623	3.623703	GCCCCATATCCGCCACATATTTA	60.624	47.826	0.00	0.00	0.00	1.40
587	647	3.883744	GATATGAGGGGTGCCGGCG	62.884	68.421	23.90	0.00	0.00	6.46
616	676	3.694566	GACATTTGAGGCCCGTTTAAGAT	59.305	43.478	0.00	0.00	0.00	2.40
629	689	5.240183	CCCGTTTAAGATGTCCGTCTAGATA	59.760	44.000	0.00	0.00	0.00	1.98
636	696	9.798994	TTAAGATGTCCGTCTAGATAAAAAGAC	57.201	33.333	0.00	0.00	39.00	3.01
637	697	7.406031	AGATGTCCGTCTAGATAAAAAGACA	57.594	36.000	0.00	4.08	41.83	3.41
638	698	8.012957	AGATGTCCGTCTAGATAAAAAGACAT	57.987	34.615	15.81	15.81	44.16	3.06
639	699	9.132923	AGATGTCCGTCTAGATAAAAAGACATA	57.867	33.333	15.83	0.00	42.19	2.29
640	700	9.915629	GATGTCCGTCTAGATAAAAAGACATAT	57.084	33.333	15.83	3.94	42.19	1.78
643	703	9.400638	GTCCGTCTAGATAAAAAGACATATGAG	57.599	37.037	10.38	0.00	41.83	2.90
654	714	5.965033	AAGACATATGAGGGTCAGTGATT	57.035	39.130	10.38	0.00	36.50	2.57
675	737	2.279517	CGGCCCGTCTGAGCATAC	60.280	66.667	0.00	0.00	0.00	2.39
694	757	3.358076	GAGGCGGGTTGAGAGGTCG	62.358	68.421	0.00	0.00	0.00	4.79
697	760	2.995574	CGGGTTGAGAGGTCGGGT	60.996	66.667	0.00	0.00	0.00	5.28
698	761	2.663196	GGGTTGAGAGGTCGGGTG	59.337	66.667	0.00	0.00	0.00	4.61
699	762	2.214920	GGGTTGAGAGGTCGGGTGT	61.215	63.158	0.00	0.00	0.00	4.16
700	763	0.901580	GGGTTGAGAGGTCGGGTGTA	60.902	60.000	0.00	0.00	0.00	2.90
701	764	0.531200	GGTTGAGAGGTCGGGTGTAG	59.469	60.000	0.00	0.00	0.00	2.74
702	765	1.542492	GTTGAGAGGTCGGGTGTAGA	58.458	55.000	0.00	0.00	0.00	2.59
704	767	2.297698	TGAGAGGTCGGGTGTAGAAA	57.702	50.000	0.00	0.00	0.00	2.52
705	768	2.600790	TGAGAGGTCGGGTGTAGAAAA	58.399	47.619	0.00	0.00	0.00	2.29
706	769	2.967201	TGAGAGGTCGGGTGTAGAAAAA	59.033	45.455	0.00	0.00	0.00	1.94
728	791	2.618442	AAGATGCTCTAAGCCTCTGC	57.382	50.000	7.38	0.00	43.80	4.26
729	792	0.758123	AGATGCTCTAAGCCTCTGCC	59.242	55.000	6.03	0.00	43.12	4.85
730	793	0.467384	GATGCTCTAAGCCTCTGCCA	59.533	55.000	0.00	0.00	41.51	4.92
731	794	0.914644	ATGCTCTAAGCCTCTGCCAA	59.085	50.000	0.00	0.00	41.51	4.52
732	795	0.036010	TGCTCTAAGCCTCTGCCAAC	60.036	55.000	0.00	0.00	41.51	3.77
733	796	0.251634	GCTCTAAGCCTCTGCCAACT	59.748	55.000	0.00	0.00	38.69	3.16
734	797	2.011046	GCTCTAAGCCTCTGCCAACTG	61.011	57.143	0.00	0.00	38.69	3.16
735	798	0.615331	TCTAAGCCTCTGCCAACTGG	59.385	55.000	0.00	0.00	38.69	4.00
736	799	0.615331	CTAAGCCTCTGCCAACTGGA	59.385	55.000	0.00	0.00	38.69	3.86
737	800	1.211457	CTAAGCCTCTGCCAACTGGAT	59.789	52.381	0.00	0.00	38.69	3.41
738	801	0.034670	AAGCCTCTGCCAACTGGATC	60.035	55.000	0.00	0.00	38.69	3.36
739	802	1.817099	GCCTCTGCCAACTGGATCG	60.817	63.158	0.00	0.00	37.39	3.69
740	803	1.599047	CCTCTGCCAACTGGATCGT	59.401	57.895	0.00	0.00	37.39	3.73
741	804	0.742281	CCTCTGCCAACTGGATCGTG	60.742	60.000	0.00	0.00	37.39	4.35
742	805	1.364626	CTCTGCCAACTGGATCGTGC	61.365	60.000	0.00	0.00	37.39	5.34
743	806	1.376424	CTGCCAACTGGATCGTGCT	60.376	57.895	0.00	0.00	37.39	4.40
744	807	1.642037	CTGCCAACTGGATCGTGCTG	61.642	60.000	0.00	0.00	37.39	4.41
745	808	1.672356	GCCAACTGGATCGTGCTGT	60.672	57.895	0.00	0.00	37.39	4.40
746	809	1.639298	GCCAACTGGATCGTGCTGTC	61.639	60.000	0.00	0.00	37.39	3.51
747	810	1.021390	CCAACTGGATCGTGCTGTCC	61.021	60.000	0.00	0.00	37.39	4.02
748	811	0.320683	CAACTGGATCGTGCTGTCCA	60.321	55.000	0.00	0.00	42.03	4.02
750	813	2.981302	TGGATCGTGCTGTCCAGG	59.019	61.111	0.00	0.00	39.51	4.45
751	814	1.913262	TGGATCGTGCTGTCCAGGT	60.913	57.895	0.00	0.00	39.51	4.00
752	815	1.296715	GGATCGTGCTGTCCAGGTT	59.703	57.895	0.00	0.00	34.57	3.50
753	816	1.021390	GGATCGTGCTGTCCAGGTTG	61.021	60.000	0.00	0.00	34.57	3.77
754	817	0.037326	GATCGTGCTGTCCAGGTTGA	60.037	55.000	0.00	0.00	0.00	3.18
755	818	0.396435	ATCGTGCTGTCCAGGTTGAA	59.604	50.000	0.00	0.00	0.00	2.69
756	819	0.179234	TCGTGCTGTCCAGGTTGAAA	59.821	50.000	0.00	0.00	0.00	2.69
757	820	1.021202	CGTGCTGTCCAGGTTGAAAA	58.979	50.000	0.00	0.00	0.00	2.29
758	821	1.403679	CGTGCTGTCCAGGTTGAAAAA	59.596	47.619	0.00	0.00	0.00	1.94
759	822	2.794631	CGTGCTGTCCAGGTTGAAAAAC	60.795	50.000	0.00	0.00	0.00	2.43
760	823	1.403679	TGCTGTCCAGGTTGAAAAACG	59.596	47.619	0.00	0.00	39.71	3.60
761	824	1.673920	GCTGTCCAGGTTGAAAAACGA	59.326	47.619	0.00	0.00	39.71	3.85
762	825	2.098443	GCTGTCCAGGTTGAAAAACGAA	59.902	45.455	0.00	0.00	39.71	3.85
763	826	3.428316	GCTGTCCAGGTTGAAAAACGAAA	60.428	43.478	0.00	0.00	39.71	3.46
764	827	4.351192	CTGTCCAGGTTGAAAAACGAAAG	58.649	43.478	0.00	0.00	39.71	2.62
807	870	2.432628	GGAGAGCCGTTCCACGTG	60.433	66.667	9.08	9.08	40.58	4.49
808	871	2.338984	GAGAGCCGTTCCACGTGT	59.661	61.111	15.65	0.00	40.58	4.49
809	872	2.022129	GAGAGCCGTTCCACGTGTG	61.022	63.158	15.65	6.24	40.58	3.82
810	873	3.712881	GAGCCGTTCCACGTGTGC	61.713	66.667	15.65	8.77	40.58	4.57
829	892	1.005748	GCTCCAAGCCACCAAAAGC	60.006	57.895	0.00	0.00	34.48	3.51
853	916	2.572104	ACCACTGGATTTCTCCTACCAC	59.428	50.000	0.71	0.00	42.59	4.16
854	917	2.840651	CCACTGGATTTCTCCTACCACT	59.159	50.000	0.00	0.00	42.59	4.00
855	918	4.030913	CCACTGGATTTCTCCTACCACTA	58.969	47.826	0.00	0.00	42.59	2.74
856	919	4.141914	CCACTGGATTTCTCCTACCACTAC	60.142	50.000	0.00	0.00	42.59	2.73
857	920	4.031611	ACTGGATTTCTCCTACCACTACC	58.968	47.826	0.00	0.00	42.59	3.18
858	921	4.030913	CTGGATTTCTCCTACCACTACCA	58.969	47.826	0.00	0.00	42.59	3.25
859	922	3.773119	TGGATTTCTCCTACCACTACCAC	59.227	47.826	0.00	0.00	42.59	4.16
860	923	4.031611	GGATTTCTCCTACCACTACCACT	58.968	47.826	0.00	0.00	38.65	4.00
861	924	4.141914	GGATTTCTCCTACCACTACCACTG	60.142	50.000	0.00	0.00	38.65	3.66
906	976	2.222027	GCAACAGATATTTCGGGGGAG	58.778	52.381	0.00	0.00	0.00	4.30
952	1022	3.432588	CGTGTCCGGTCTCGCTCT	61.433	66.667	10.00	0.00	34.56	4.09
953	1023	2.486042	GTGTCCGGTCTCGCTCTC	59.514	66.667	0.00	0.00	34.56	3.20
955	1025	3.878519	GTCCGGTCTCGCTCTCCG	61.879	72.222	0.00	0.00	43.30	4.63
958	1028	4.180946	CGGTCTCGCTCTCCGGTG	62.181	72.222	0.00	0.00	40.49	4.94
1002	1097	1.361668	CCGCTCAACCCAGTTCGATG	61.362	60.000	0.00	0.00	0.00	3.84
1003	1098	1.796796	GCTCAACCCAGTTCGATGC	59.203	57.895	0.00	0.00	0.00	3.91
1006	1101	0.955428	TCAACCCAGTTCGATGCTGC	60.955	55.000	10.84	0.00	32.93	5.25
1007	1102	2.034879	AACCCAGTTCGATGCTGCG	61.035	57.895	10.84	6.37	32.93	5.18
1008	1103	3.869272	CCCAGTTCGATGCTGCGC	61.869	66.667	0.00	0.00	32.93	6.09
1009	1104	4.214383	CCAGTTCGATGCTGCGCG	62.214	66.667	0.00	0.00	32.93	6.86
1010	1105	4.858200	CAGTTCGATGCTGCGCGC	62.858	66.667	27.26	27.26	39.77	6.86
1047	1142	2.464157	ACTCACCAAGCTTCTAGCAC	57.536	50.000	0.00	0.00	45.56	4.40
1070	1172	5.066246	ACTTCTTCTCCGAGTACTATTTCCG	59.934	44.000	0.00	0.00	0.00	4.30
1102	1204	0.112995	TTGATCTGGCAAGGCAAGGT	59.887	50.000	0.00	0.00	29.11	3.50
1118	1220	2.338785	GGTTCTTCCAGCTGCTGCC	61.339	63.158	23.86	14.29	40.80	4.85
1119	1221	2.359107	TTCTTCCAGCTGCTGCCG	60.359	61.111	23.86	11.60	40.80	5.69
1174	1280	2.003196	CTGCTCTTCTTCCTCGGTTC	57.997	55.000	0.00	0.00	0.00	3.62
1220	1326	3.425758	GCCGTAATTTCCCTTTCGAAGTG	60.426	47.826	0.00	0.00	0.00	3.16
1221	1327	3.998341	CCGTAATTTCCCTTTCGAAGTGA	59.002	43.478	0.00	0.00	0.00	3.41
1222	1328	4.092968	CCGTAATTTCCCTTTCGAAGTGAG	59.907	45.833	0.00	0.00	0.00	3.51
1223	1329	4.689345	CGTAATTTCCCTTTCGAAGTGAGT	59.311	41.667	0.00	0.00	0.00	3.41
1224	1330	5.865552	CGTAATTTCCCTTTCGAAGTGAGTA	59.134	40.000	0.00	0.00	0.00	2.59
1225	1331	6.183360	CGTAATTTCCCTTTCGAAGTGAGTAC	60.183	42.308	0.00	0.00	0.00	2.73
1263	1377	1.214062	CAGCTGACTCGTGAGACCC	59.786	63.158	8.42	0.00	35.39	4.46
1264	1378	1.228583	AGCTGACTCGTGAGACCCA	60.229	57.895	3.44	0.00	35.39	4.51
1265	1379	1.080434	GCTGACTCGTGAGACCCAC	60.080	63.158	3.44	0.00	42.30	4.61
1266	1380	1.587054	CTGACTCGTGAGACCCACC	59.413	63.158	3.44	0.00	42.76	4.61
1267	1381	1.152631	TGACTCGTGAGACCCACCA	60.153	57.895	3.44	0.00	42.76	4.17
1291	1405	2.366435	GATGGGGTTCGAGGGGGA	60.366	66.667	0.00	0.00	0.00	4.81
1292	1406	2.366972	ATGGGGTTCGAGGGGGAG	60.367	66.667	0.00	0.00	0.00	4.30
1293	1407	2.891307	GATGGGGTTCGAGGGGGAGA	62.891	65.000	0.00	0.00	0.00	3.71
1358	1474	5.764686	GCCCCTTTTTCATGTCAAAAGAAAT	59.235	36.000	23.38	0.00	41.81	2.17
1372	1490	7.147742	TGTCAAAAGAAATAAATGATAGCCCCC	60.148	37.037	0.00	0.00	0.00	5.40
1385	1503	9.533831	AAATGATAGCCCCCTTTTAATAGTATG	57.466	33.333	0.00	0.00	0.00	2.39
1407	1528	9.508567	GTATGAAAAGAAAAATGAGCTCCATAC	57.491	33.333	12.15	12.32	34.45	2.39
1460	1603	7.865706	ATCCGAAGCAGTTGTATTTTATTCT	57.134	32.000	0.00	0.00	0.00	2.40
1483	1626	9.702253	TTCTCCATATCTTCATATAGTACTCCC	57.298	37.037	0.00	0.00	0.00	4.30
1485	1628	9.349713	CTCCATATCTTCATATAGTACTCCCTC	57.650	40.741	0.00	0.00	0.00	4.30
1486	1629	8.282982	TCCATATCTTCATATAGTACTCCCTCC	58.717	40.741	0.00	0.00	0.00	4.30
1487	1630	7.229707	CCATATCTTCATATAGTACTCCCTCCG	59.770	44.444	0.00	0.00	0.00	4.63
1488	1631	5.579753	TCTTCATATAGTACTCCCTCCGT	57.420	43.478	0.00	0.00	0.00	4.69
1489	1632	5.950023	TCTTCATATAGTACTCCCTCCGTT	58.050	41.667	0.00	0.00	0.00	4.44
1490	1633	6.002704	TCTTCATATAGTACTCCCTCCGTTC	58.997	44.000	0.00	0.00	0.00	3.95
1491	1634	4.660168	TCATATAGTACTCCCTCCGTTCC	58.340	47.826	0.00	0.00	0.00	3.62
1492	1635	4.353191	TCATATAGTACTCCCTCCGTTCCT	59.647	45.833	0.00	0.00	0.00	3.36
1493	1636	5.549228	TCATATAGTACTCCCTCCGTTCCTA	59.451	44.000	0.00	0.00	0.00	2.94
1494	1637	4.803329	ATAGTACTCCCTCCGTTCCTAA	57.197	45.455	0.00	0.00	0.00	2.69
1495	1638	3.463048	AGTACTCCCTCCGTTCCTAAA	57.537	47.619	0.00	0.00	0.00	1.85
1496	1639	3.991683	AGTACTCCCTCCGTTCCTAAAT	58.008	45.455	0.00	0.00	0.00	1.40
1497	1640	5.134725	AGTACTCCCTCCGTTCCTAAATA	57.865	43.478	0.00	0.00	0.00	1.40
1498	1641	4.892345	AGTACTCCCTCCGTTCCTAAATAC	59.108	45.833	0.00	0.00	0.00	1.89
1499	1642	3.991683	ACTCCCTCCGTTCCTAAATACT	58.008	45.455	0.00	0.00	0.00	2.12
1500	1643	4.359996	ACTCCCTCCGTTCCTAAATACTT	58.640	43.478	0.00	0.00	0.00	2.24
1501	1644	4.161754	ACTCCCTCCGTTCCTAAATACTTG	59.838	45.833	0.00	0.00	0.00	3.16
1502	1645	4.098894	TCCCTCCGTTCCTAAATACTTGT	58.901	43.478	0.00	0.00	0.00	3.16
1503	1646	4.161001	TCCCTCCGTTCCTAAATACTTGTC	59.839	45.833	0.00	0.00	0.00	3.18
1504	1647	4.161754	CCCTCCGTTCCTAAATACTTGTCT	59.838	45.833	0.00	0.00	0.00	3.41
1505	1648	5.338137	CCCTCCGTTCCTAAATACTTGTCTT	60.338	44.000	0.00	0.00	0.00	3.01
1506	1649	6.171213	CCTCCGTTCCTAAATACTTGTCTTT	58.829	40.000	0.00	0.00	0.00	2.52
1507	1650	6.653740	CCTCCGTTCCTAAATACTTGTCTTTT	59.346	38.462	0.00	0.00	0.00	2.27
1508	1651	7.174426	CCTCCGTTCCTAAATACTTGTCTTTTT	59.826	37.037	0.00	0.00	0.00	1.94
1509	1652	9.211485	CTCCGTTCCTAAATACTTGTCTTTTTA	57.789	33.333	0.00	0.00	0.00	1.52
1510	1653	9.211485	TCCGTTCCTAAATACTTGTCTTTTTAG	57.789	33.333	0.00	0.00	33.47	1.85
1511	1654	8.448615	CCGTTCCTAAATACTTGTCTTTTTAGG	58.551	37.037	12.11	12.11	46.30	2.69
1512	1655	7.961283	CGTTCCTAAATACTTGTCTTTTTAGGC	59.039	37.037	13.09	3.06	45.31	3.93
1513	1656	8.789762	GTTCCTAAATACTTGTCTTTTTAGGCA	58.210	33.333	13.09	2.93	45.31	4.75
1514	1657	9.528489	TTCCTAAATACTTGTCTTTTTAGGCAT	57.472	29.630	13.09	0.00	45.31	4.40
1515	1658	9.528489	TCCTAAATACTTGTCTTTTTAGGCATT	57.472	29.630	13.09	0.00	45.31	3.56
1520	1663	9.476202	AATACTTGTCTTTTTAGGCATTTCAAC	57.524	29.630	0.00	0.00	0.00	3.18
1521	1664	6.872920	ACTTGTCTTTTTAGGCATTTCAACA	58.127	32.000	0.00	0.00	0.00	3.33
1522	1665	7.327214	ACTTGTCTTTTTAGGCATTTCAACAA	58.673	30.769	0.00	0.00	0.00	2.83
1523	1666	7.492344	ACTTGTCTTTTTAGGCATTTCAACAAG	59.508	33.333	0.00	0.00	43.26	3.16
1524	1667	6.872920	TGTCTTTTTAGGCATTTCAACAAGT	58.127	32.000	0.00	0.00	0.00	3.16
1525	1668	6.756074	TGTCTTTTTAGGCATTTCAACAAGTG	59.244	34.615	0.00	0.00	0.00	3.16
1526	1669	6.978080	GTCTTTTTAGGCATTTCAACAAGTGA	59.022	34.615	0.00	0.00	0.00	3.41
1527	1670	6.978080	TCTTTTTAGGCATTTCAACAAGTGAC	59.022	34.615	0.00	0.00	35.39	3.67
1528	1671	6.463995	TTTTAGGCATTTCAACAAGTGACT	57.536	33.333	0.00	0.00	40.60	3.41
1529	1672	7.575414	TTTTAGGCATTTCAACAAGTGACTA	57.425	32.000	0.00	0.00	38.51	2.59
1530	1673	6.554334	TTAGGCATTTCAACAAGTGACTAC	57.446	37.500	0.00	0.00	39.07	2.73
1531	1674	4.460263	AGGCATTTCAACAAGTGACTACA	58.540	39.130	0.00	0.00	35.84	2.74
1532	1675	5.072741	AGGCATTTCAACAAGTGACTACAT	58.927	37.500	0.00	0.00	35.84	2.29
1533	1676	6.237901	AGGCATTTCAACAAGTGACTACATA	58.762	36.000	0.00	0.00	35.84	2.29
1534	1677	6.149474	AGGCATTTCAACAAGTGACTACATAC	59.851	38.462	0.00	0.00	35.84	2.39
1535	1678	6.015504	GCATTTCAACAAGTGACTACATACG	58.984	40.000	0.00	0.00	35.39	3.06
1536	1679	6.534059	CATTTCAACAAGTGACTACATACGG	58.466	40.000	0.00	0.00	35.39	4.02
1537	1680	5.456548	TTCAACAAGTGACTACATACGGA	57.543	39.130	0.00	0.00	35.39	4.69
1538	1681	5.055642	TCAACAAGTGACTACATACGGAG	57.944	43.478	0.00	0.00	0.00	4.63
1539	1682	3.505464	ACAAGTGACTACATACGGAGC	57.495	47.619	0.00	0.00	0.00	4.70
1540	1683	2.823747	ACAAGTGACTACATACGGAGCA	59.176	45.455	0.00	0.00	0.00	4.26
1541	1684	3.257375	ACAAGTGACTACATACGGAGCAA	59.743	43.478	0.00	0.00	0.00	3.91
1542	1685	4.242475	CAAGTGACTACATACGGAGCAAA	58.758	43.478	0.00	0.00	0.00	3.68
1543	1686	4.530710	AGTGACTACATACGGAGCAAAA	57.469	40.909	0.00	0.00	0.00	2.44
1544	1687	5.086104	AGTGACTACATACGGAGCAAAAT	57.914	39.130	0.00	0.00	0.00	1.82
1545	1688	4.870426	AGTGACTACATACGGAGCAAAATG	59.130	41.667	0.00	0.00	0.00	2.32
1546	1689	4.868171	GTGACTACATACGGAGCAAAATGA	59.132	41.667	0.00	0.00	0.00	2.57
1547	1690	5.005779	GTGACTACATACGGAGCAAAATGAG	59.994	44.000	0.00	0.00	0.00	2.90
1548	1691	5.086104	ACTACATACGGAGCAAAATGAGT	57.914	39.130	0.00	0.00	0.00	3.41
1549	1692	4.870426	ACTACATACGGAGCAAAATGAGTG	59.130	41.667	0.00	0.00	0.00	3.51
1550	1693	3.937814	ACATACGGAGCAAAATGAGTGA	58.062	40.909	0.00	0.00	0.00	3.41
1551	1694	4.323417	ACATACGGAGCAAAATGAGTGAA	58.677	39.130	0.00	0.00	0.00	3.18
1552	1695	4.943705	ACATACGGAGCAAAATGAGTGAAT	59.056	37.500	0.00	0.00	0.00	2.57
1553	1696	5.415701	ACATACGGAGCAAAATGAGTGAATT	59.584	36.000	0.00	0.00	0.00	2.17
1554	1697	4.853924	ACGGAGCAAAATGAGTGAATTT	57.146	36.364	0.00	0.00	0.00	1.82
1555	1698	5.957842	ACGGAGCAAAATGAGTGAATTTA	57.042	34.783	0.00	0.00	0.00	1.40
1556	1699	6.515272	ACGGAGCAAAATGAGTGAATTTAT	57.485	33.333	0.00	0.00	0.00	1.40
1557	1700	7.624360	ACGGAGCAAAATGAGTGAATTTATA	57.376	32.000	0.00	0.00	0.00	0.98
1558	1701	7.472543	ACGGAGCAAAATGAGTGAATTTATAC	58.527	34.615	0.00	0.00	0.00	1.47
1559	1702	7.336931	ACGGAGCAAAATGAGTGAATTTATACT	59.663	33.333	0.00	0.00	0.00	2.12
1560	1703	8.184192	CGGAGCAAAATGAGTGAATTTATACTT	58.816	33.333	0.00	0.00	0.00	2.24
1561	1704	9.860898	GGAGCAAAATGAGTGAATTTATACTTT	57.139	29.630	0.00	0.00	0.00	2.66
1632	1775	9.595823	TCTAGAAAGACAAATATTTAGGAACGG	57.404	33.333	0.00	0.00	0.00	4.44
1633	1776	9.595823	CTAGAAAGACAAATATTTAGGAACGGA	57.404	33.333	0.00	0.00	0.00	4.69
1634	1777	8.494016	AGAAAGACAAATATTTAGGAACGGAG	57.506	34.615	0.00	0.00	0.00	4.63
1635	1778	7.553044	AGAAAGACAAATATTTAGGAACGGAGG	59.447	37.037	0.00	0.00	0.00	4.30
1636	1779	5.681639	AGACAAATATTTAGGAACGGAGGG	58.318	41.667	0.00	0.00	0.00	4.30
1637	1780	5.427481	AGACAAATATTTAGGAACGGAGGGA	59.573	40.000	0.00	0.00	0.00	4.20
1638	1781	5.681639	ACAAATATTTAGGAACGGAGGGAG	58.318	41.667	0.00	0.00	0.00	4.30
1639	1782	5.191124	ACAAATATTTAGGAACGGAGGGAGT	59.809	40.000	0.00	0.00	0.00	3.85
1640	1783	6.384886	ACAAATATTTAGGAACGGAGGGAGTA	59.615	38.462	0.00	0.00	0.00	2.59
1641	1784	6.667558	AATATTTAGGAACGGAGGGAGTAG	57.332	41.667	0.00	0.00	0.00	2.57
1642	1785	3.463048	TTTAGGAACGGAGGGAGTAGT	57.537	47.619	0.00	0.00	0.00	2.73
1643	1786	4.591321	TTTAGGAACGGAGGGAGTAGTA	57.409	45.455	0.00	0.00	0.00	1.82
1644	1787	2.433662	AGGAACGGAGGGAGTAGTAC	57.566	55.000	0.00	0.00	0.00	2.73
1695	1843	4.268644	CGTTTGTCTATGCTCGATGATTGT	59.731	41.667	0.00	0.00	0.00	2.71
1706	1854	4.108336	CTCGATGATTGTGACGTCTGAAT	58.892	43.478	17.92	13.95	0.00	2.57
1853	2005	1.202382	GCAGCTCCATCCTTTTCATGC	60.202	52.381	0.00	0.00	0.00	4.06
1931	2097	0.105039	GTCATGGACTCCACGGATCC	59.895	60.000	0.00	0.00	35.80	3.36
1935	2101	0.541392	TGGACTCCACGGATCCATTG	59.459	55.000	13.41	7.98	37.60	2.82
1971	2137	2.279120	GACGGAGGCAGCTCATCG	60.279	66.667	0.00	0.00	0.00	3.84
1987	2153	0.957395	ATCGCAGGAGGTTTGTGCTG	60.957	55.000	0.00	0.00	38.84	4.41
1992	2158	1.062488	AGGAGGTTTGTGCTGTCCCT	61.062	55.000	0.00	0.00	0.00	4.20
1996	2162	0.606673	GGTTTGTGCTGTCCCTCTCC	60.607	60.000	0.00	0.00	0.00	3.71
2002	2168	1.925972	GCTGTCCCTCTCCCCCTTT	60.926	63.158	0.00	0.00	0.00	3.11
2008	2174	0.341609	CCCTCTCCCCCTTTCTCTCT	59.658	60.000	0.00	0.00	0.00	3.10
2009	2175	1.691163	CCCTCTCCCCCTTTCTCTCTC	60.691	61.905	0.00	0.00	0.00	3.20
2010	2176	1.398692	CTCTCCCCCTTTCTCTCTCG	58.601	60.000	0.00	0.00	0.00	4.04
2011	2177	0.684805	TCTCCCCCTTTCTCTCTCGC	60.685	60.000	0.00	0.00	0.00	5.03
2012	2178	0.972983	CTCCCCCTTTCTCTCTCGCA	60.973	60.000	0.00	0.00	0.00	5.10
2013	2179	1.219393	CCCCCTTTCTCTCTCGCAC	59.781	63.158	0.00	0.00	0.00	5.34
2014	2180	1.153745	CCCCTTTCTCTCTCGCACG	60.154	63.158	0.00	0.00	0.00	5.34
2015	2181	1.807573	CCCTTTCTCTCTCGCACGC	60.808	63.158	0.00	0.00	0.00	5.34
2016	2182	2.155194	CCTTTCTCTCTCGCACGCG	61.155	63.158	3.53	3.53	41.35	6.01
2017	2183	1.154207	CTTTCTCTCTCGCACGCGA	60.154	57.895	15.93	14.15	46.87	5.87
2029	2195	4.496670	ACGCGAGTATCACCTTGC	57.503	55.556	15.93	0.00	46.88	4.01
2042	2208	2.263741	CCTTGCGAGGCTTGCTTGT	61.264	57.895	26.25	0.00	35.94	3.16
2055	2221	0.657312	TGCTTGTGCGAACTCTGTTG	59.343	50.000	0.00	0.00	43.34	3.33
2059	2225	1.570813	TGTGCGAACTCTGTTGTCAG	58.429	50.000	0.00	0.00	42.54	3.51
2090	2264	9.334693	GTATTCAGATTTTGCTCTTTGTAGTTG	57.665	33.333	0.00	0.00	0.00	3.16
2095	2269	8.077991	CAGATTTTGCTCTTTGTAGTTGATTCA	58.922	33.333	0.00	0.00	0.00	2.57
2130	2353	0.953727	TGTTGGTGCTGTCTTGCATC	59.046	50.000	0.00	0.00	45.23	3.91
2150	2373	4.537135	TCCTTCTAAACAGCTCGACAAT	57.463	40.909	0.00	0.00	0.00	2.71
2151	2374	4.894784	TCCTTCTAAACAGCTCGACAATT	58.105	39.130	0.00	0.00	0.00	2.32
2152	2375	5.305585	TCCTTCTAAACAGCTCGACAATTT	58.694	37.500	0.00	0.00	0.00	1.82
2153	2376	5.408604	TCCTTCTAAACAGCTCGACAATTTC	59.591	40.000	0.00	0.00	0.00	2.17
2154	2377	5.390991	CCTTCTAAACAGCTCGACAATTTCC	60.391	44.000	0.00	0.00	0.00	3.13
2155	2378	4.637276	TCTAAACAGCTCGACAATTTCCA	58.363	39.130	0.00	0.00	0.00	3.53
2156	2379	5.245531	TCTAAACAGCTCGACAATTTCCAT	58.754	37.500	0.00	0.00	0.00	3.41
2157	2380	3.837213	AACAGCTCGACAATTTCCATG	57.163	42.857	0.00	0.00	0.00	3.66
2158	2381	1.470098	ACAGCTCGACAATTTCCATGC	59.530	47.619	0.00	0.00	0.00	4.06
2159	2382	1.741706	CAGCTCGACAATTTCCATGCT	59.258	47.619	0.00	0.00	0.00	3.79
2160	2383	2.163010	CAGCTCGACAATTTCCATGCTT	59.837	45.455	0.00	0.00	0.00	3.91
2161	2384	3.374988	CAGCTCGACAATTTCCATGCTTA	59.625	43.478	0.00	0.00	0.00	3.09
2162	2385	3.624861	AGCTCGACAATTTCCATGCTTAG	59.375	43.478	0.00	0.00	0.00	2.18
2163	2386	3.375299	GCTCGACAATTTCCATGCTTAGT	59.625	43.478	0.00	0.00	0.00	2.24
2164	2387	4.142600	GCTCGACAATTTCCATGCTTAGTT	60.143	41.667	0.00	0.00	0.00	2.24
2165	2388	5.064707	GCTCGACAATTTCCATGCTTAGTTA	59.935	40.000	0.00	0.00	0.00	2.24
2166	2389	6.238484	GCTCGACAATTTCCATGCTTAGTTAT	60.238	38.462	0.00	0.00	0.00	1.89
2167	2390	7.246674	TCGACAATTTCCATGCTTAGTTATC	57.753	36.000	0.00	0.00	0.00	1.75
2168	2391	6.019075	TCGACAATTTCCATGCTTAGTTATCG	60.019	38.462	0.00	0.00	0.00	2.92
2169	2392	6.019075	CGACAATTTCCATGCTTAGTTATCGA	60.019	38.462	0.00	0.00	0.00	3.59
2170	2393	7.465379	CGACAATTTCCATGCTTAGTTATCGAA	60.465	37.037	0.00	0.00	0.00	3.71
2171	2394	7.697691	ACAATTTCCATGCTTAGTTATCGAAG	58.302	34.615	0.00	0.00	0.00	3.79
2179	2402	5.975410	GCTTAGTTATCGAAGCATGAAGT	57.025	39.130	12.20	0.00	46.41	3.01
2181	2404	7.644986	GCTTAGTTATCGAAGCATGAAGTAT	57.355	36.000	12.20	0.00	46.41	2.12
2182	2405	8.077836	GCTTAGTTATCGAAGCATGAAGTATT	57.922	34.615	12.20	0.00	46.41	1.89
2183	2406	8.006590	GCTTAGTTATCGAAGCATGAAGTATTG	58.993	37.037	12.20	0.00	46.41	1.90
2184	2407	9.249457	CTTAGTTATCGAAGCATGAAGTATTGA	57.751	33.333	0.00	0.00	0.00	2.57
2185	2408	7.706281	AGTTATCGAAGCATGAAGTATTGAG	57.294	36.000	0.00	0.00	0.00	3.02
2186	2409	7.492524	AGTTATCGAAGCATGAAGTATTGAGA	58.507	34.615	0.00	0.00	0.00	3.27
2187	2410	7.436673	AGTTATCGAAGCATGAAGTATTGAGAC	59.563	37.037	0.00	0.00	0.00	3.36
2188	2411	5.330455	TCGAAGCATGAAGTATTGAGACT	57.670	39.130	0.00	0.00	0.00	3.24
2189	2412	5.724328	TCGAAGCATGAAGTATTGAGACTT	58.276	37.500	0.00	0.00	42.42	3.01
2190	2413	5.578336	TCGAAGCATGAAGTATTGAGACTTG	59.422	40.000	0.00	0.00	39.79	3.16
2191	2414	5.557891	AAGCATGAAGTATTGAGACTTGC	57.442	39.130	0.00	0.00	39.79	4.01
2192	2415	4.841422	AGCATGAAGTATTGAGACTTGCT	58.159	39.130	0.00	0.00	39.79	3.91
2193	2416	4.874966	AGCATGAAGTATTGAGACTTGCTC	59.125	41.667	0.00	0.00	39.79	4.26
2194	2417	4.034975	GCATGAAGTATTGAGACTTGCTCC	59.965	45.833	0.00	0.00	43.26	4.70
2195	2418	4.207891	TGAAGTATTGAGACTTGCTCCC	57.792	45.455	0.00	0.00	43.26	4.30
2196	2419	3.840666	TGAAGTATTGAGACTTGCTCCCT	59.159	43.478	0.00	0.00	43.26	4.20
2197	2420	4.081420	TGAAGTATTGAGACTTGCTCCCTC	60.081	45.833	0.00	0.00	43.26	4.30
2198	2421	2.769095	AGTATTGAGACTTGCTCCCTCC	59.231	50.000	0.00	0.00	43.26	4.30
2199	2422	0.539051	ATTGAGACTTGCTCCCTCCG	59.461	55.000	0.00	0.00	43.26	4.63
2200	2423	0.832135	TTGAGACTTGCTCCCTCCGT	60.832	55.000	0.00	0.00	43.26	4.69
2201	2424	0.832135	TGAGACTTGCTCCCTCCGTT	60.832	55.000	0.00	0.00	43.26	4.44
2202	2425	0.108567	GAGACTTGCTCCCTCCGTTC	60.109	60.000	0.00	0.00	37.69	3.95
2203	2426	0.832135	AGACTTGCTCCCTCCGTTCA	60.832	55.000	0.00	0.00	0.00	3.18
2204	2427	0.670854	GACTTGCTCCCTCCGTTCAC	60.671	60.000	0.00	0.00	0.00	3.18
2205	2428	1.371183	CTTGCTCCCTCCGTTCACA	59.629	57.895	0.00	0.00	0.00	3.58
2206	2429	0.250295	CTTGCTCCCTCCGTTCACAA	60.250	55.000	0.00	0.00	0.00	3.33
2207	2430	0.181587	TTGCTCCCTCCGTTCACAAA	59.818	50.000	0.00	0.00	0.00	2.83
2208	2431	0.400213	TGCTCCCTCCGTTCACAAAT	59.600	50.000	0.00	0.00	0.00	2.32
2209	2432	1.626321	TGCTCCCTCCGTTCACAAATA	59.374	47.619	0.00	0.00	0.00	1.40
2210	2433	2.238646	TGCTCCCTCCGTTCACAAATAT	59.761	45.455	0.00	0.00	0.00	1.28
2211	2434	3.452990	TGCTCCCTCCGTTCACAAATATA	59.547	43.478	0.00	0.00	0.00	0.86
2212	2435	4.080807	TGCTCCCTCCGTTCACAAATATAA	60.081	41.667	0.00	0.00	0.00	0.98
2213	2436	4.511826	GCTCCCTCCGTTCACAAATATAAG	59.488	45.833	0.00	0.00	0.00	1.73
2214	2437	5.684030	GCTCCCTCCGTTCACAAATATAAGA	60.684	44.000	0.00	0.00	0.00	2.10
2215	2438	6.494666	TCCCTCCGTTCACAAATATAAGAT	57.505	37.500	0.00	0.00	0.00	2.40
2216	2439	6.288294	TCCCTCCGTTCACAAATATAAGATG	58.712	40.000	0.00	0.00	0.00	2.90
2217	2440	6.055588	CCCTCCGTTCACAAATATAAGATGT	58.944	40.000	0.00	0.00	0.00	3.06
2218	2441	7.070198	TCCCTCCGTTCACAAATATAAGATGTA	59.930	37.037	0.00	0.00	0.00	2.29
2219	2442	7.713507	CCCTCCGTTCACAAATATAAGATGTAA	59.286	37.037	0.00	0.00	0.00	2.41
2220	2443	8.548721	CCTCCGTTCACAAATATAAGATGTAAC	58.451	37.037	0.00	0.00	0.00	2.50
2221	2444	9.093970	CTCCGTTCACAAATATAAGATGTAACA	57.906	33.333	0.00	0.00	0.00	2.41
2222	2445	9.438228	TCCGTTCACAAATATAAGATGTAACAA	57.562	29.630	0.00	0.00	0.00	2.83
2223	2446	9.485591	CCGTTCACAAATATAAGATGTAACAAC	57.514	33.333	0.00	0.00	0.00	3.32
2269	2492	5.835113	AGACATGTTTTAGTGTGTTTGCT	57.165	34.783	0.00	0.00	0.00	3.91
2270	2493	5.821204	AGACATGTTTTAGTGTGTTTGCTC	58.179	37.500	0.00	0.00	0.00	4.26
2271	2494	5.356751	AGACATGTTTTAGTGTGTTTGCTCA	59.643	36.000	0.00	0.00	0.00	4.26
2272	2495	5.339990	ACATGTTTTAGTGTGTTTGCTCAC	58.660	37.500	0.00	0.00	38.85	3.51
2273	2496	5.125417	ACATGTTTTAGTGTGTTTGCTCACT	59.875	36.000	0.00	7.34	46.94	3.41
2274	2497	5.229921	TGTTTTAGTGTGTTTGCTCACTC	57.770	39.130	5.73	5.46	45.03	3.51
2275	2498	4.697828	TGTTTTAGTGTGTTTGCTCACTCA	59.302	37.500	5.73	0.00	45.03	3.41
2276	2499	5.356751	TGTTTTAGTGTGTTTGCTCACTCAT	59.643	36.000	5.73	0.00	45.03	2.90
2277	2500	6.127758	TGTTTTAGTGTGTTTGCTCACTCATT	60.128	34.615	5.73	1.68	45.03	2.57
2278	2501	6.449635	TTTAGTGTGTTTGCTCACTCATTT	57.550	33.333	5.73	0.00	45.03	2.32
2279	2502	4.558538	AGTGTGTTTGCTCACTCATTTC	57.441	40.909	8.22	0.00	43.46	2.17
2280	2503	3.947196	AGTGTGTTTGCTCACTCATTTCA	59.053	39.130	8.22	0.00	43.46	2.69
2281	2504	4.036027	AGTGTGTTTGCTCACTCATTTCAG	59.964	41.667	8.22	0.00	43.46	3.02
2282	2505	3.947196	TGTGTTTGCTCACTCATTTCAGT	59.053	39.130	8.22	0.00	38.90	3.41
2283	2506	4.035558	TGTGTTTGCTCACTCATTTCAGTC	59.964	41.667	8.22	0.00	38.90	3.51
2284	2507	3.565482	TGTTTGCTCACTCATTTCAGTCC	59.435	43.478	0.00	0.00	0.00	3.85
2285	2508	2.084610	TGCTCACTCATTTCAGTCCG	57.915	50.000	0.00	0.00	0.00	4.79
2286	2509	1.344438	TGCTCACTCATTTCAGTCCGT	59.656	47.619	0.00	0.00	0.00	4.69
2287	2510	2.560981	TGCTCACTCATTTCAGTCCGTA	59.439	45.455	0.00	0.00	0.00	4.02
2288	2511	3.195610	TGCTCACTCATTTCAGTCCGTAT	59.804	43.478	0.00	0.00	0.00	3.06
2289	2512	3.553511	GCTCACTCATTTCAGTCCGTATG	59.446	47.826	0.00	0.00	0.00	2.39
2290	2513	4.748892	CTCACTCATTTCAGTCCGTATGT	58.251	43.478	0.00	0.00	0.00	2.29
2291	2514	5.678871	GCTCACTCATTTCAGTCCGTATGTA	60.679	44.000	0.00	0.00	0.00	2.29
2292	2515	5.647589	TCACTCATTTCAGTCCGTATGTAC	58.352	41.667	0.00	0.00	0.00	2.90
2293	2516	5.417894	TCACTCATTTCAGTCCGTATGTACT	59.582	40.000	0.00	0.00	0.00	2.73
2294	2517	5.744345	CACTCATTTCAGTCCGTATGTACTC	59.256	44.000	0.00	0.00	0.00	2.59
2295	2518	5.163540	ACTCATTTCAGTCCGTATGTACTCC	60.164	44.000	0.00	0.00	0.00	3.85
2296	2519	4.707934	TCATTTCAGTCCGTATGTACTCCA	59.292	41.667	0.00	0.00	0.00	3.86
2297	2520	5.362717	TCATTTCAGTCCGTATGTACTCCAT	59.637	40.000	0.00	0.00	37.58	3.41
2298	2521	6.548251	TCATTTCAGTCCGTATGTACTCCATA	59.452	38.462	0.00	0.00	34.86	2.74
2299	2522	6.971726	TTTCAGTCCGTATGTACTCCATAT	57.028	37.500	0.00	0.00	38.29	1.78
2300	2523	6.971726	TTCAGTCCGTATGTACTCCATATT	57.028	37.500	0.00	0.00	38.29	1.28
2301	2524	8.467963	TTTCAGTCCGTATGTACTCCATATTA	57.532	34.615	0.00	0.00	38.29	0.98
2302	2525	8.467963	TTCAGTCCGTATGTACTCCATATTAA	57.532	34.615	0.00	0.00	38.29	1.40
2303	2526	8.467963	TCAGTCCGTATGTACTCCATATTAAA	57.532	34.615	0.00	0.00	38.29	1.52
2304	2527	9.085645	TCAGTCCGTATGTACTCCATATTAAAT	57.914	33.333	0.00	0.00	38.29	1.40
2339	2562	9.160496	CATCTTATATTTATGAACAGAGGGAGC	57.840	37.037	0.00	0.00	0.00	4.70
2340	2563	8.262601	TCTTATATTTATGAACAGAGGGAGCA	57.737	34.615	0.00	0.00	0.00	4.26
2341	2564	8.713971	TCTTATATTTATGAACAGAGGGAGCAA	58.286	33.333	0.00	0.00	0.00	3.91
2342	2565	9.512588	CTTATATTTATGAACAGAGGGAGCAAT	57.487	33.333	0.00	0.00	0.00	3.56
2343	2566	9.866655	TTATATTTATGAACAGAGGGAGCAATT	57.133	29.630	0.00	0.00	0.00	2.32
2345	2568	9.866655	ATATTTATGAACAGAGGGAGCAATTAA	57.133	29.630	0.00	0.00	0.00	1.40
2346	2569	8.593945	ATTTATGAACAGAGGGAGCAATTAAA	57.406	30.769	0.00	0.00	0.00	1.52
2347	2570	8.593945	TTTATGAACAGAGGGAGCAATTAAAT	57.406	30.769	0.00	0.00	0.00	1.40
2348	2571	8.593945	TTATGAACAGAGGGAGCAATTAAATT	57.406	30.769	0.00	0.00	0.00	1.82
2349	2572	6.916360	TGAACAGAGGGAGCAATTAAATTT	57.084	33.333	0.00	0.00	0.00	1.82
2350	2573	6.924111	TGAACAGAGGGAGCAATTAAATTTC	58.076	36.000	0.00	0.00	0.00	2.17
2351	2574	6.493115	TGAACAGAGGGAGCAATTAAATTTCA	59.507	34.615	0.00	0.00	0.00	2.69
2352	2575	6.916360	ACAGAGGGAGCAATTAAATTTCAA	57.084	33.333	0.00	0.00	0.00	2.69
2353	2576	7.301868	ACAGAGGGAGCAATTAAATTTCAAA	57.698	32.000	0.00	0.00	0.00	2.69
2354	2577	7.381323	ACAGAGGGAGCAATTAAATTTCAAAG	58.619	34.615	0.00	0.00	0.00	2.77
2355	2578	7.233348	ACAGAGGGAGCAATTAAATTTCAAAGA	59.767	33.333	0.00	0.00	0.00	2.52
2356	2579	8.090214	CAGAGGGAGCAATTAAATTTCAAAGAA	58.910	33.333	0.00	0.00	0.00	2.52
2357	2580	8.650490	AGAGGGAGCAATTAAATTTCAAAGAAA	58.350	29.630	0.00	0.00	0.00	2.52
2400	2645	4.839668	TTTTAACCATGAACCCTGTTCG	57.160	40.909	0.00	0.00	0.00	3.95
2401	2646	3.495434	TTAACCATGAACCCTGTTCGT	57.505	42.857	0.00	0.00	0.00	3.85
2402	2647	4.620589	TTAACCATGAACCCTGTTCGTA	57.379	40.909	0.00	0.00	0.00	3.43
2403	2648	2.467566	ACCATGAACCCTGTTCGTAC	57.532	50.000	0.00	0.00	0.00	3.67
2404	2649	1.975680	ACCATGAACCCTGTTCGTACT	59.024	47.619	0.00	0.00	0.00	2.73
2405	2650	2.028385	ACCATGAACCCTGTTCGTACTC	60.028	50.000	0.00	0.00	0.00	2.59
2406	2651	2.618053	CATGAACCCTGTTCGTACTCC	58.382	52.381	1.65	0.00	0.00	3.85
2407	2652	0.971386	TGAACCCTGTTCGTACTCCC	59.029	55.000	2.84	0.00	0.00	4.30
2409	2654	1.204231	GAACCCTGTTCGTACTCCCTC	59.796	57.143	0.00	0.00	0.00	4.30
2410	2655	0.614134	ACCCTGTTCGTACTCCCTCC	60.614	60.000	0.00	0.00	0.00	4.30
2411	2656	1.664321	CCCTGTTCGTACTCCCTCCG	61.664	65.000	0.00	0.00	0.00	4.63
2412	2657	0.964358	CCTGTTCGTACTCCCTCCGT	60.964	60.000	0.00	0.00	0.00	4.69
2413	2658	0.450983	CTGTTCGTACTCCCTCCGTC	59.549	60.000	0.00	0.00	0.00	4.79
2414	2659	0.962356	TGTTCGTACTCCCTCCGTCC	60.962	60.000	0.00	0.00	0.00	4.79
2415	2660	1.746615	TTCGTACTCCCTCCGTCCG	60.747	63.158	0.00	0.00	0.00	4.79
2416	2661	3.207669	CGTACTCCCTCCGTCCGG	61.208	72.222	0.00	0.00	0.00	5.14
2417	2662	2.273449	GTACTCCCTCCGTCCGGA	59.727	66.667	0.00	0.00	42.90	5.14
2418	2663	1.379044	GTACTCCCTCCGTCCGGAA	60.379	63.158	5.23	0.00	44.66	4.30
2419	2664	0.967380	GTACTCCCTCCGTCCGGAAA	60.967	60.000	5.23	0.00	44.66	3.13
2420	2665	0.032813	TACTCCCTCCGTCCGGAAAT	60.033	55.000	5.23	0.00	44.66	2.17
2421	2666	0.032813	ACTCCCTCCGTCCGGAAATA	60.033	55.000	5.23	0.00	44.66	1.40
2422	2667	0.388294	CTCCCTCCGTCCGGAAATAC	59.612	60.000	5.23	0.00	44.66	1.89
2423	2668	0.032813	TCCCTCCGTCCGGAAATACT	60.033	55.000	5.23	0.00	44.66	2.12
2424	2669	0.828677	CCCTCCGTCCGGAAATACTT	59.171	55.000	5.23	0.00	44.66	2.24
2425	2670	1.472728	CCCTCCGTCCGGAAATACTTG	60.473	57.143	5.23	0.00	44.66	3.16
2426	2671	1.206371	CCTCCGTCCGGAAATACTTGT	59.794	52.381	5.23	0.00	44.66	3.16
2427	2672	2.537401	CTCCGTCCGGAAATACTTGTC	58.463	52.381	5.23	0.00	44.66	3.18
2428	2673	1.205417	TCCGTCCGGAAATACTTGTCC	59.795	52.381	5.23	0.00	42.05	4.02
2429	2674	1.206371	CCGTCCGGAAATACTTGTCCT	59.794	52.381	5.23	0.00	37.50	3.85
2430	2675	2.428171	CCGTCCGGAAATACTTGTCCTA	59.572	50.000	5.23	0.00	37.50	2.94
2431	2676	3.490419	CCGTCCGGAAATACTTGTCCTAG	60.490	52.174	5.23	0.00	37.50	3.02
2432	2677	3.379372	CGTCCGGAAATACTTGTCCTAGA	59.621	47.826	5.23	0.00	0.00	2.43
2433	2678	4.142315	CGTCCGGAAATACTTGTCCTAGAA	60.142	45.833	5.23	0.00	0.00	2.10
2434	2679	5.622914	CGTCCGGAAATACTTGTCCTAGAAA	60.623	44.000	5.23	0.00	0.00	2.52
2435	2680	6.346896	GTCCGGAAATACTTGTCCTAGAAAT	58.653	40.000	5.23	0.00	0.00	2.17
2436	2681	6.258068	GTCCGGAAATACTTGTCCTAGAAATG	59.742	42.308	5.23	0.00	0.00	2.32
2437	2682	6.155565	TCCGGAAATACTTGTCCTAGAAATGA	59.844	38.462	0.00	0.00	0.00	2.57
2438	2683	6.992715	CCGGAAATACTTGTCCTAGAAATGAT	59.007	38.462	0.00	0.00	0.00	2.45
2439	2684	7.499232	CCGGAAATACTTGTCCTAGAAATGATT	59.501	37.037	0.00	0.00	0.00	2.57
2440	2685	8.338259	CGGAAATACTTGTCCTAGAAATGATTG	58.662	37.037	0.00	0.00	0.00	2.67
2441	2686	9.178758	GGAAATACTTGTCCTAGAAATGATTGT	57.821	33.333	0.00	0.00	0.00	2.71
2450	2695	8.861086	TGTCCTAGAAATGATTGTATCTAGACC	58.139	37.037	11.93	4.98	42.48	3.85
2451	2696	9.084533	GTCCTAGAAATGATTGTATCTAGACCT	57.915	37.037	11.93	0.00	42.48	3.85
2456	2701	9.084533	AGAAATGATTGTATCTAGACCTAGGAC	57.915	37.037	17.98	9.98	34.06	3.85
2457	2702	8.783660	AAATGATTGTATCTAGACCTAGGACA	57.216	34.615	17.98	4.23	34.06	4.02
2458	2703	8.783660	AATGATTGTATCTAGACCTAGGACAA	57.216	34.615	17.98	13.82	40.35	3.18
2459	2704	7.825331	TGATTGTATCTAGACCTAGGACAAG	57.175	40.000	17.98	9.13	39.91	3.16
2460	2705	7.355101	TGATTGTATCTAGACCTAGGACAAGT	58.645	38.462	17.98	4.21	39.91	3.16
2461	2706	8.500238	TGATTGTATCTAGACCTAGGACAAGTA	58.500	37.037	17.98	4.25	39.91	2.24
2462	2707	9.523168	GATTGTATCTAGACCTAGGACAAGTAT	57.477	37.037	17.98	4.86	39.91	2.12
2463	2708	9.884814	ATTGTATCTAGACCTAGGACAAGTATT	57.115	33.333	17.98	0.00	39.91	1.89
2464	2709	9.710818	TTGTATCTAGACCTAGGACAAGTATTT	57.289	33.333	17.98	0.00	35.98	1.40
2465	2710	9.352191	TGTATCTAGACCTAGGACAAGTATTTC	57.648	37.037	17.98	0.00	34.06	2.17
2466	2711	7.842887	ATCTAGACCTAGGACAAGTATTTCC	57.157	40.000	17.98	0.00	34.06	3.13
2467	2712	5.826737	TCTAGACCTAGGACAAGTATTTCCG	59.173	44.000	17.98	0.00	36.95	4.30
2468	2713	3.705072	AGACCTAGGACAAGTATTTCCGG	59.295	47.826	17.98	0.00	36.95	5.14
2469	2714	3.703052	GACCTAGGACAAGTATTTCCGGA	59.297	47.826	17.98	0.00	36.95	5.14
2470	2715	3.450096	ACCTAGGACAAGTATTTCCGGAC	59.550	47.826	17.98	0.00	36.95	4.79
2471	2716	2.667473	AGGACAAGTATTTCCGGACG	57.333	50.000	1.83	0.00	36.95	4.79
2472	2717	1.206371	AGGACAAGTATTTCCGGACGG	59.794	52.381	1.83	3.96	36.95	4.79
2473	2718	1.205417	GGACAAGTATTTCCGGACGGA	59.795	52.381	1.83	9.76	43.52	4.69
2474	2719	2.537401	GACAAGTATTTCCGGACGGAG	58.463	52.381	13.64	3.15	46.06	4.63
2475	2720	1.206371	ACAAGTATTTCCGGACGGAGG	59.794	52.381	13.64	0.00	46.06	4.30
2476	2721	0.828677	AAGTATTTCCGGACGGAGGG	59.171	55.000	13.64	0.00	46.06	4.30
2477	2722	0.032813	AGTATTTCCGGACGGAGGGA	60.033	55.000	13.64	4.95	46.06	4.20
2478	2723	0.388294	GTATTTCCGGACGGAGGGAG	59.612	60.000	13.64	0.00	46.06	4.30
2479	2724	0.032813	TATTTCCGGACGGAGGGAGT	60.033	55.000	13.64	0.00	46.06	3.85
2480	2725	0.032813	ATTTCCGGACGGAGGGAGTA	60.033	55.000	13.64	0.00	46.06	2.59
2481	2726	0.967380	TTTCCGGACGGAGGGAGTAC	60.967	60.000	13.64	0.00	46.06	2.73
2482	2727	1.856539	TTCCGGACGGAGGGAGTACT	61.857	60.000	13.64	0.00	46.06	2.73
2483	2728	1.379576	CCGGACGGAGGGAGTACTT	60.380	63.158	4.40	0.00	37.50	2.24
2484	2729	0.107017	CCGGACGGAGGGAGTACTTA	60.107	60.000	4.40	0.00	37.50	2.24
2485	2730	1.683011	CCGGACGGAGGGAGTACTTAA	60.683	57.143	4.40	0.00	37.50	1.85
2486	2731	2.305009	CGGACGGAGGGAGTACTTAAT	58.695	52.381	0.00	0.00	0.00	1.40
2487	2732	3.480470	CGGACGGAGGGAGTACTTAATA	58.520	50.000	0.00	0.00	0.00	0.98
2488	2733	3.885297	CGGACGGAGGGAGTACTTAATAA	59.115	47.826	0.00	0.00	0.00	1.40
2489	2734	4.261363	CGGACGGAGGGAGTACTTAATAAC	60.261	50.000	0.00	0.00	0.00	1.89
2490	2735	4.646492	GGACGGAGGGAGTACTTAATAACA	59.354	45.833	0.00	0.00	0.00	2.41
2491	2736	5.451103	GGACGGAGGGAGTACTTAATAACAC	60.451	48.000	0.00	0.00	0.00	3.32
2492	2737	5.018809	ACGGAGGGAGTACTTAATAACACA	58.981	41.667	0.00	0.00	0.00	3.72
2493	2738	5.126707	ACGGAGGGAGTACTTAATAACACAG	59.873	44.000	0.00	0.00	0.00	3.66
2494	2739	5.359009	CGGAGGGAGTACTTAATAACACAGA	59.641	44.000	0.00	0.00	0.00	3.41
2495	2740	6.040616	CGGAGGGAGTACTTAATAACACAGAT	59.959	42.308	0.00	0.00	0.00	2.90
2496	2741	7.230108	CGGAGGGAGTACTTAATAACACAGATA	59.770	40.741	0.00	0.00	0.00	1.98
2497	2742	8.921205	GGAGGGAGTACTTAATAACACAGATAA	58.079	37.037	0.00	0.00	0.00	1.75
2612	2860	5.591643	ATGCTGTGAAAGTACTGTTTACG	57.408	39.130	0.00	0.00	0.00	3.18
2624	2872	0.752054	TGTTTACGGTCGGTGTCCTT	59.248	50.000	0.00	0.00	0.00	3.36
2626	2874	0.752054	TTTACGGTCGGTGTCCTTGT	59.248	50.000	0.00	0.00	0.00	3.16
2723	2971	6.332504	AGTATTGCGTACTCGATTCTTTTG	57.667	37.500	0.00	0.00	39.46	2.44
2832	3080	3.557054	GCTAACTGTTCCCATGTCAGTCA	60.557	47.826	0.00	0.00	40.81	3.41
2838	3089	3.511540	TGTTCCCATGTCAGTCAGAGTAG	59.488	47.826	0.00	0.00	0.00	2.57
2900	3151	3.045601	ACCTGTCAGCGCCATTATATC	57.954	47.619	2.29	0.00	0.00	1.63
2903	3154	3.555795	CCTGTCAGCGCCATTATATCACT	60.556	47.826	2.29	0.00	0.00	3.41
2906	3157	4.511454	TGTCAGCGCCATTATATCACTTTC	59.489	41.667	2.29	0.00	0.00	2.62
2944	3195	6.037830	TGGTTACTTCTGCTTTACTGTGAAAC	59.962	38.462	0.00	0.00	37.35	2.78
2979	3230	5.186021	ACGGAATATACAGGTGATGGATCTC	59.814	44.000	0.00	0.00	33.19	2.75
3009	3260	0.907486	TGGTCATCCTGCTTCCAGAG	59.093	55.000	0.00	0.00	41.77	3.35
3058	3309	5.395768	CCTCCTTAACCATAGGTCAGTTCAG	60.396	48.000	0.00	0.00	33.12	3.02
3161	3453	7.736031	TCTGTCGAGAATAAATACTTGAACG	57.264	36.000	0.00	0.00	0.00	3.95
3191	3484	8.922676	ACACTTATATTTCACACTCTTAACGTG	58.077	33.333	0.00	0.00	38.32	4.49
3257	3692	9.922305	GTGAATATATTTGGTCTCTTCTTTTCG	57.078	33.333	0.00	0.00	0.00	3.46
3305	4124	2.554462	TCTCTTCAGACACTGAACCGAG	59.446	50.000	17.11	17.11	44.27	4.63
3352	4171	6.892658	ATTTTATGGCCGCATTCTGTATTA	57.107	33.333	0.00	0.00	0.00	0.98
3463	4282	7.233757	ACCTAGTCAGTTATCTCACAAAAGTCT	59.766	37.037	0.00	0.00	0.00	3.24
3489	4308	3.058450	TGAAACAAATTTGGATGCTGCG	58.942	40.909	21.74	0.00	0.00	5.18
3528	4347	2.293677	GCAAGGTACTAGCTATCTCGCA	59.706	50.000	0.00	0.00	38.49	5.10
3558	4377	0.371645	GAGCCTTCGTTGCTGATTCG	59.628	55.000	1.08	0.00	39.69	3.34
3625	4445	8.439993	TTTCATTATGGTAAGCGCTACAAATA	57.560	30.769	12.05	4.44	31.45	1.40
3630	4450	5.080969	TGGTAAGCGCTACAAATAACTCT	57.919	39.130	12.05	0.00	31.45	3.24
3634	4454	3.600388	AGCGCTACAAATAACTCTTGCT	58.400	40.909	8.99	0.00	0.00	3.91
3667	4487	8.375506	TGATTCAGAATAACCACAAAGAGTACT	58.624	33.333	0.00	0.00	0.00	2.73
3668	4488	8.779354	ATTCAGAATAACCACAAAGAGTACTC	57.221	34.615	15.41	15.41	0.00	2.59
3669	4489	7.540474	TCAGAATAACCACAAAGAGTACTCT	57.460	36.000	20.00	20.00	42.75	3.24
3671	4491	9.256228	TCAGAATAACCACAAAGAGTACTCTAT	57.744	33.333	25.42	12.87	39.39	1.98
3748	4575	9.743581	AAAAATCTTTATTACTCCCTCCGTAAA	57.256	29.630	0.00	0.00	31.36	2.01
3749	4576	9.916360	AAAATCTTTATTACTCCCTCCGTAAAT	57.084	29.630	0.00	0.00	31.36	1.40
3761	4588	8.312564	ACTCCCTCCGTAAATAAATATAAGAGC	58.687	37.037	0.00	0.00	0.00	4.09
3762	4589	7.318141	TCCCTCCGTAAATAAATATAAGAGCG	58.682	38.462	0.00	0.00	0.00	5.03
3763	4590	7.039504	TCCCTCCGTAAATAAATATAAGAGCGT	60.040	37.037	0.00	0.00	0.00	5.07
3764	4591	7.601508	CCCTCCGTAAATAAATATAAGAGCGTT	59.398	37.037	0.00	0.00	0.00	4.84
3814	4641	9.449719	AATGCTCTTATATTTATTTACGGAGGG	57.550	33.333	0.00	0.00	0.00	4.30
3853	5358	4.186926	ACTGTTCTGATGGATGAACGATG	58.813	43.478	0.00	0.00	43.73	3.84
3855	5360	1.856802	TCTGATGGATGAACGATGCG	58.143	50.000	0.00	0.00	0.00	4.73
3865	5370	1.286501	GAACGATGCGAATGCCACTA	58.713	50.000	0.00	0.00	41.78	2.74
3867	5372	0.175760	ACGATGCGAATGCCACTAGT	59.824	50.000	0.00	0.00	41.78	2.57
3887	6012	8.926710	CACTAGTTTCTGGTGTTAAGTATTCAG	58.073	37.037	0.00	0.00	38.01	3.02
3890	6015	7.736893	AGTTTCTGGTGTTAAGTATTCAGACT	58.263	34.615	0.00	0.00	31.97	3.24
3891	6016	7.873505	AGTTTCTGGTGTTAAGTATTCAGACTC	59.126	37.037	0.00	0.00	31.97	3.36
3932	6070	2.159653	GCATCCAACACATCTCGAACAC	60.160	50.000	0.00	0.00	0.00	3.32
3987	7461	6.273071	AGAACAACCTAAAAATTGCACAGAC	58.727	36.000	0.00	0.00	0.00	3.51
3993	7467	8.686334	CAACCTAAAAATTGCACAGACCTATAT	58.314	33.333	0.00	0.00	0.00	0.86
3994	7468	9.914834	AACCTAAAAATTGCACAGACCTATATA	57.085	29.630	0.00	0.00	0.00	0.86
4020	7505	6.158695	ACACCTGAGAATACATTGACCCTTAT	59.841	38.462	0.00	0.00	0.00	1.73
4024	7509	7.443575	CCTGAGAATACATTGACCCTTATCAAG	59.556	40.741	0.00	0.00	41.76	3.02
4035	7520	8.477419	TTGACCCTTATCAAGACAAAAGAAAT	57.523	30.769	0.00	0.00	33.62	2.17
4038	7523	8.655935	ACCCTTATCAAGACAAAAGAAATGAT	57.344	30.769	0.00	0.00	0.00	2.45
4046	7532	8.950210	TCAAGACAAAAGAAATGATAAGCTAGG	58.050	33.333	0.00	0.00	0.00	3.02
4074	7560	4.165779	CAAATAGCCCAACAAAACTAGCG	58.834	43.478	0.00	0.00	0.00	4.26
4158	7644	7.699812	GCATTCAATATCTGAACTCTGTTTTCC	59.300	37.037	3.46	0.00	46.80	3.13
4237	7724	3.603532	CTTCTATCAGCAGCACTTCCAA	58.396	45.455	0.00	0.00	0.00	3.53
4256	7743	0.962489	ATAATCTCAGCCGGTCCTCG	59.038	55.000	1.90	0.00	38.88	4.63
4298	7785	5.942961	AGATCCTATCTCTTCTCGGTACAA	58.057	41.667	0.00	0.00	33.42	2.41
4392	7879	3.614092	AGCCGATCAATTTGATGACACT	58.386	40.909	16.41	5.94	37.20	3.55
4525	8012	1.826385	CTGGCTCTGGGGTTTTACAG	58.174	55.000	0.00	0.00	36.07	2.74
5080	8642	7.604164	TGAAACAGTCTGATCAAGTAGATTTCC	59.396	37.037	6.91	0.00	37.00	3.13
5138	8700	3.436704	TCAGGTTCTTTGATAAAGCTGCG	59.563	43.478	8.91	0.00	45.83	5.18
5334	8896	3.469008	TGACAATGGAGAAACACGTCT	57.531	42.857	0.00	0.00	31.10	4.18
5379	8941	6.043590	TGCATCCTTTCAGTCCATAGATACAT	59.956	38.462	0.00	0.00	0.00	2.29
5449	9011	7.601856	CCAGTAATTAGAAAATTCACTGGCAA	58.398	34.615	13.45	0.00	43.50	4.52
5594	9156	4.269523	AGCAAGGCGGCTGTTCCA	62.270	61.111	14.21	0.00	43.89	3.53
5681	9243	7.602753	ACATTGGGCTAACTGAATTTTTCTAC	58.397	34.615	0.00	0.00	0.00	2.59
5744	9306	0.931005	CGCTTCTTAACATCTCGGCC	59.069	55.000	0.00	0.00	0.00	6.13
5774	9336	9.729281	AATTACCTTAGTTCGTTTATCCTTTCA	57.271	29.630	0.00	0.00	0.00	2.69
5970	9532	5.068987	TCCTTGACCTTGGCATTATAATTGC	59.931	40.000	0.00	3.60	0.00	3.56
5990	9552	5.568685	TGCAGACTGTAACTCTGTAGATC	57.431	43.478	3.99	0.00	37.96	2.75
6013	9575	6.503524	TCTTTCTTTTTCAAAACCGGAGATG	58.496	36.000	9.46	3.27	0.00	2.90
6056	9618	5.964758	TCTCATTATGAAAAATGGTGGTGC	58.035	37.500	0.00	0.00	37.44	5.01
6060	9622	7.546358	TCATTATGAAAAATGGTGGTGCTAAG	58.454	34.615	0.00	0.00	37.44	2.18
6081	9643	8.082242	GCTAAGAAGTGCTTTTATCTGGAAAAA	58.918	33.333	0.00	0.00	38.05	1.94
6132	9696	9.555727	GTTACTTCTATATTACATGGCTCCAAA	57.444	33.333	0.00	0.00	0.00	3.28
6168	9736	2.680841	TGTTTGGCACAGAACTACACAC	59.319	45.455	2.57	0.00	42.39	3.82
6169	9737	2.943033	GTTTGGCACAGAACTACACACT	59.057	45.455	0.00	0.00	42.39	3.55
6170	9738	2.238942	TGGCACAGAACTACACACTG	57.761	50.000	0.00	0.00	37.62	3.66
6171	9739	1.202639	TGGCACAGAACTACACACTGG	60.203	52.381	0.00	0.00	36.17	4.00
6172	9740	1.070134	GGCACAGAACTACACACTGGA	59.930	52.381	0.00	0.00	36.17	3.86
6173	9741	2.289694	GGCACAGAACTACACACTGGAT	60.290	50.000	0.00	0.00	36.17	3.41
6174	9742	3.056107	GGCACAGAACTACACACTGGATA	60.056	47.826	0.00	0.00	36.17	2.59
6175	9743	4.383118	GGCACAGAACTACACACTGGATAT	60.383	45.833	0.00	0.00	36.17	1.63
6176	9744	5.178797	GCACAGAACTACACACTGGATATT	58.821	41.667	0.00	0.00	36.17	1.28
6177	9745	6.338146	GCACAGAACTACACACTGGATATTA	58.662	40.000	0.00	0.00	36.17	0.98
6178	9746	6.255887	GCACAGAACTACACACTGGATATTAC	59.744	42.308	0.00	0.00	36.17	1.89
6179	9747	7.548097	CACAGAACTACACACTGGATATTACT	58.452	38.462	0.00	0.00	36.17	2.24
6180	9748	8.035394	CACAGAACTACACACTGGATATTACTT	58.965	37.037	0.00	0.00	36.17	2.24
6181	9749	8.251721	ACAGAACTACACACTGGATATTACTTC	58.748	37.037	0.00	0.00	36.17	3.01
6294	9867	8.627403	GTGCACAGGTAAACTATACAGTATAGA	58.373	37.037	27.76	8.56	40.43	1.98
6331	9904	0.609151	TTCAGGCGACGGGTTTATCA	59.391	50.000	0.00	0.00	0.00	2.15
6402	9975	1.963338	GTTTGTGAGGCAGCGAGCT	60.963	57.895	4.24	0.00	44.79	4.09
6417	9991	2.224314	GCGAGCTGGTGATAATTAAGCC	59.776	50.000	0.00	0.70	34.35	4.35
6634	10208	5.104610	ACATGGATGTCTCAAACTAGATGCT	60.105	40.000	0.00	0.00	35.87	3.79
6639	10213	3.129462	TGTCTCAAACTAGATGCTCCTCG	59.871	47.826	0.00	0.00	0.00	4.63
6640	10214	2.690497	TCTCAAACTAGATGCTCCTCGG	59.310	50.000	0.00	0.00	0.00	4.63
6652	10227	2.235155	TGCTCCTCGGCACTACAAAATA	59.765	45.455	0.00	0.00	37.29	1.40
6816	10524	3.334691	CTTGGCACGTTCCTCTTCATTA	58.665	45.455	5.66	0.00	0.00	1.90
6840	10548	1.511613	CCCCTCCTTGCTCATCCTTA	58.488	55.000	0.00	0.00	0.00	2.69

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	61	2.940890	ATCGTGGCGGAAATGGCGAT	62.941	55.000	0.00	0.00	37.19	4.58
89	113	4.351938	CGGCCCGTCGTGTGAAGA	62.352	66.667	0.00	0.00	0.00	2.87
218	243	1.772063	GCCACGACGCCATAATGTCC	61.772	60.000	0.00	0.00	0.00	4.02
223	248	3.083848	ATCCGCCACGACGCCATAA	62.084	57.895	0.00	0.00	0.00	1.90
281	307	0.884704	AAGTCCGCATTGCACTTCGT	60.885	50.000	9.69	0.00	0.00	3.85
300	326	1.691219	GGTTGGAGGAGGCAATGGA	59.309	57.895	0.00	0.00	0.00	3.41
402	428	2.490148	CCCGAGCTCATCTACGGCA	61.490	63.158	15.40	0.00	43.37	5.69
427	463	0.105194	TCACTTCACTCCACTCCCCA	60.105	55.000	0.00	0.00	0.00	4.96
456	503	2.049433	CCAAACGCTCGTCGGAGT	60.049	61.111	5.25	0.00	42.53	3.85
470	517	2.621929	CCCCATTTATGTTCGTCCCCAA	60.622	50.000	0.00	0.00	0.00	4.12
481	528	1.479389	GCCCTCCTGACCCCATTTATG	60.479	57.143	0.00	0.00	0.00	1.90
517	565	2.669569	GCATGCCAGTGGTGTCGT	60.670	61.111	11.74	0.00	0.00	4.34
563	623	1.422161	GCACCCCTCATATCCAGCCT	61.422	60.000	0.00	0.00	0.00	4.58
587	647	2.115291	GCCTCAAATGTCCGGGCTC	61.115	63.158	7.97	0.00	39.68	4.70
616	676	8.909923	TCATATGTCTTTTTATCTAGACGGACA	58.090	33.333	1.90	4.40	42.88	4.02
629	689	6.126863	TCACTGACCCTCATATGTCTTTTT	57.873	37.500	1.90	0.00	32.67	1.94
634	694	4.384056	CCAATCACTGACCCTCATATGTC	58.616	47.826	1.90	0.00	0.00	3.06
636	696	3.748083	CCCAATCACTGACCCTCATATG	58.252	50.000	0.00	0.00	0.00	1.78
637	697	2.107204	GCCCAATCACTGACCCTCATAT	59.893	50.000	0.00	0.00	0.00	1.78
638	698	1.490490	GCCCAATCACTGACCCTCATA	59.510	52.381	0.00	0.00	0.00	2.15
639	699	0.257039	GCCCAATCACTGACCCTCAT	59.743	55.000	0.00	0.00	0.00	2.90
640	700	1.685224	GCCCAATCACTGACCCTCA	59.315	57.895	0.00	0.00	0.00	3.86
643	703	2.438434	CCGCCCAATCACTGACCC	60.438	66.667	0.00	0.00	0.00	4.46
675	737	3.358076	GACCTCTCAACCCGCCTCG	62.358	68.421	0.00	0.00	0.00	4.63
712	775	0.914644	TTGGCAGAGGCTTAGAGCAT	59.085	50.000	2.04	0.00	44.75	3.79
713	776	0.036010	GTTGGCAGAGGCTTAGAGCA	60.036	55.000	2.04	0.00	44.75	4.26
714	777	0.251634	AGTTGGCAGAGGCTTAGAGC	59.748	55.000	0.00	0.00	41.46	4.09
715	778	1.406614	CCAGTTGGCAGAGGCTTAGAG	60.407	57.143	0.00	0.00	40.87	2.43
716	779	0.615331	CCAGTTGGCAGAGGCTTAGA	59.385	55.000	0.00	0.00	40.87	2.10
717	780	0.615331	TCCAGTTGGCAGAGGCTTAG	59.385	55.000	0.00	0.00	40.87	2.18
718	781	1.210478	GATCCAGTTGGCAGAGGCTTA	59.790	52.381	0.00	0.00	40.87	3.09
719	782	0.034670	GATCCAGTTGGCAGAGGCTT	60.035	55.000	0.00	0.00	40.87	4.35
720	783	1.606531	GATCCAGTTGGCAGAGGCT	59.393	57.895	0.00	0.00	40.87	4.58
721	784	1.817099	CGATCCAGTTGGCAGAGGC	60.817	63.158	0.00	0.00	40.13	4.70
722	785	0.742281	CACGATCCAGTTGGCAGAGG	60.742	60.000	0.00	0.00	34.44	3.69
723	786	1.364626	GCACGATCCAGTTGGCAGAG	61.365	60.000	0.00	0.00	34.44	3.35
724	787	1.375908	GCACGATCCAGTTGGCAGA	60.376	57.895	0.00	0.00	34.44	4.26
725	788	1.376424	AGCACGATCCAGTTGGCAG	60.376	57.895	0.00	0.00	34.44	4.85
726	789	1.672030	CAGCACGATCCAGTTGGCA	60.672	57.895	0.00	0.00	34.44	4.92
727	790	1.639298	GACAGCACGATCCAGTTGGC	61.639	60.000	0.00	0.00	34.44	4.52
728	791	1.021390	GGACAGCACGATCCAGTTGG	61.021	60.000	0.00	0.00	34.87	3.77
729	792	0.320683	TGGACAGCACGATCCAGTTG	60.321	55.000	0.00	0.00	40.17	3.16
730	793	2.057830	TGGACAGCACGATCCAGTT	58.942	52.632	0.00	0.00	40.17	3.16
731	794	3.791640	TGGACAGCACGATCCAGT	58.208	55.556	0.00	0.00	40.17	4.00
733	796	1.480212	AACCTGGACAGCACGATCCA	61.480	55.000	0.00	0.00	42.88	3.41
734	797	1.021390	CAACCTGGACAGCACGATCC	61.021	60.000	0.00	0.00	35.37	3.36
735	798	0.037326	TCAACCTGGACAGCACGATC	60.037	55.000	0.00	0.00	0.00	3.69
736	799	0.396435	TTCAACCTGGACAGCACGAT	59.604	50.000	0.00	0.00	0.00	3.73
737	800	0.179234	TTTCAACCTGGACAGCACGA	59.821	50.000	0.00	0.00	0.00	4.35
738	801	1.021202	TTTTCAACCTGGACAGCACG	58.979	50.000	0.00	0.00	0.00	5.34
739	802	2.794631	CGTTTTTCAACCTGGACAGCAC	60.795	50.000	0.00	0.00	0.00	4.40
740	803	1.403679	CGTTTTTCAACCTGGACAGCA	59.596	47.619	0.00	0.00	0.00	4.41
741	804	1.673920	TCGTTTTTCAACCTGGACAGC	59.326	47.619	0.00	0.00	0.00	4.40
742	805	4.142469	ACTTTCGTTTTTCAACCTGGACAG	60.142	41.667	0.00	0.00	0.00	3.51
743	806	3.759618	ACTTTCGTTTTTCAACCTGGACA	59.240	39.130	0.00	0.00	0.00	4.02
744	807	4.365899	ACTTTCGTTTTTCAACCTGGAC	57.634	40.909	0.00	0.00	0.00	4.02
745	808	5.394224	AAACTTTCGTTTTTCAACCTGGA	57.606	34.783	0.00	0.00	40.30	3.86
798	861	3.712881	GGAGCGCACACGTGGAAC	61.713	66.667	21.57	7.58	42.83	3.62
799	862	3.741830	TTGGAGCGCACACGTGGAA	62.742	57.895	21.57	0.00	42.83	3.53
800	863	4.228567	TTGGAGCGCACACGTGGA	62.229	61.111	21.57	0.00	42.83	4.02
801	864	3.716006	CTTGGAGCGCACACGTGG	61.716	66.667	21.57	10.05	42.83	4.94
802	865	4.374702	GCTTGGAGCGCACACGTG	62.375	66.667	15.48	15.48	42.83	4.49
805	868	4.030452	GTGGCTTGGAGCGCACAC	62.030	66.667	11.47	0.00	43.62	3.82
808	871	4.577677	TTGGTGGCTTGGAGCGCA	62.578	61.111	11.47	0.00	43.62	6.09
809	872	2.753931	CTTTTGGTGGCTTGGAGCGC	62.754	60.000	0.00	0.00	43.62	5.92
810	873	1.286880	CTTTTGGTGGCTTGGAGCG	59.713	57.895	0.00	0.00	43.62	5.03
811	874	1.005748	GCTTTTGGTGGCTTGGAGC	60.006	57.895	0.00	0.00	41.46	4.70
812	875	1.286880	CGCTTTTGGTGGCTTGGAG	59.713	57.895	0.00	0.00	0.00	3.86
829	892	3.181478	GGTAGGAGAAATCCAGTGGTACG	60.181	52.174	9.54	0.00	0.00	3.67
937	1007	2.750637	GGAGAGCGAGACCGGACA	60.751	66.667	9.46	0.00	36.06	4.02
938	1008	3.878519	CGGAGAGCGAGACCGGAC	61.879	72.222	9.46	0.10	42.48	4.79
942	1012	3.053849	GACACCGGAGAGCGAGACC	62.054	68.421	9.46	0.00	0.00	3.85
943	1013	2.486042	GACACCGGAGAGCGAGAC	59.514	66.667	9.46	0.00	0.00	3.36
945	1015	4.180946	CGGACACCGGAGAGCGAG	62.181	72.222	9.46	0.00	44.15	5.03
1047	1142	5.066246	ACGGAAATAGTACTCGGAGAAGAAG	59.934	44.000	12.86	0.00	34.09	2.85
1070	1172	2.158449	CCAGATCAACGAAGAAGCACAC	59.842	50.000	0.00	0.00	0.00	3.82
1102	1204	2.359107	CGGCAGCAGCTGGAAGAA	60.359	61.111	24.13	0.00	43.60	2.52
1208	1314	5.388408	AACTAGTACTCACTTCGAAAGGG	57.612	43.478	0.00	0.00	36.14	3.95
1220	1326	3.124976	AGACGAGCAACGAACTAGTACTC	59.875	47.826	0.00	0.00	45.77	2.59
1221	1327	3.072944	AGACGAGCAACGAACTAGTACT	58.927	45.455	0.00	0.00	45.77	2.73
1222	1328	3.124976	AGAGACGAGCAACGAACTAGTAC	59.875	47.826	10.05	0.00	45.77	2.73
1223	1329	3.332919	AGAGACGAGCAACGAACTAGTA	58.667	45.455	10.05	0.00	45.77	1.82
1224	1330	2.152830	AGAGACGAGCAACGAACTAGT	58.847	47.619	10.05	0.00	45.77	2.57
1225	1331	2.159824	TGAGAGACGAGCAACGAACTAG	59.840	50.000	10.05	0.00	45.77	2.57
1263	1377	2.359850	CCCCATCGTGGTGTGGTG	60.360	66.667	3.82	0.00	35.17	4.17
1264	1378	2.406002	GAACCCCATCGTGGTGTGGT	62.406	60.000	3.82	1.81	35.17	4.16
1265	1379	1.674322	GAACCCCATCGTGGTGTGG	60.674	63.158	3.82	0.00	35.17	4.17
1266	1380	2.032634	CGAACCCCATCGTGGTGTG	61.033	63.158	3.82	0.00	38.01	3.82
1267	1381	2.167398	CTCGAACCCCATCGTGGTGT	62.167	60.000	3.82	0.00	43.19	4.16
1291	1405	2.113986	GTGCCAGTGCCAACCTCT	59.886	61.111	0.00	0.00	36.33	3.69
1292	1406	2.203337	TGTGCCAGTGCCAACCTC	60.203	61.111	0.00	0.00	36.33	3.85
1293	1407	2.519302	GTGTGCCAGTGCCAACCT	60.519	61.111	0.00	0.00	36.33	3.50
1384	1502	6.206634	ACGTATGGAGCTCATTTTTCTTTTCA	59.793	34.615	17.19	0.00	37.30	2.69
1385	1503	6.612306	ACGTATGGAGCTCATTTTTCTTTTC	58.388	36.000	17.19	0.00	37.30	2.29
1460	1603	8.282982	GGAGGGAGTACTATATGAAGATATGGA	58.717	40.741	0.00	0.00	29.71	3.41
1481	1624	4.161754	AGACAAGTATTTAGGAACGGAGGG	59.838	45.833	0.00	0.00	0.00	4.30
1483	1626	7.668525	AAAAGACAAGTATTTAGGAACGGAG	57.331	36.000	0.00	0.00	0.00	4.63
1494	1637	9.476202	GTTGAAATGCCTAAAAAGACAAGTATT	57.524	29.630	0.00	0.00	0.00	1.89
1495	1638	8.637986	TGTTGAAATGCCTAAAAAGACAAGTAT	58.362	29.630	0.00	0.00	0.00	2.12
1496	1639	8.001881	TGTTGAAATGCCTAAAAAGACAAGTA	57.998	30.769	0.00	0.00	0.00	2.24
1497	1640	6.872920	TGTTGAAATGCCTAAAAAGACAAGT	58.127	32.000	0.00	0.00	0.00	3.16
1498	1641	7.492344	ACTTGTTGAAATGCCTAAAAAGACAAG	59.508	33.333	0.00	0.00	43.36	3.16
1499	1642	7.277539	CACTTGTTGAAATGCCTAAAAAGACAA	59.722	33.333	0.00	0.00	0.00	3.18
1500	1643	6.756074	CACTTGTTGAAATGCCTAAAAAGACA	59.244	34.615	0.00	0.00	0.00	3.41
1501	1644	6.978080	TCACTTGTTGAAATGCCTAAAAAGAC	59.022	34.615	0.00	0.00	0.00	3.01
1502	1645	6.978080	GTCACTTGTTGAAATGCCTAAAAAGA	59.022	34.615	0.00	0.00	35.39	2.52
1503	1646	6.980397	AGTCACTTGTTGAAATGCCTAAAAAG	59.020	34.615	0.00	0.00	35.39	2.27
1504	1647	6.872920	AGTCACTTGTTGAAATGCCTAAAAA	58.127	32.000	0.00	0.00	35.39	1.94
1505	1648	6.463995	AGTCACTTGTTGAAATGCCTAAAA	57.536	33.333	0.00	0.00	35.39	1.52
1506	1649	6.544197	TGTAGTCACTTGTTGAAATGCCTAAA	59.456	34.615	0.00	0.00	35.39	1.85
1507	1650	6.058833	TGTAGTCACTTGTTGAAATGCCTAA	58.941	36.000	0.00	0.00	35.39	2.69
1508	1651	5.616270	TGTAGTCACTTGTTGAAATGCCTA	58.384	37.500	0.00	0.00	35.39	3.93
1509	1652	4.460263	TGTAGTCACTTGTTGAAATGCCT	58.540	39.130	0.00	0.00	35.39	4.75
1510	1653	4.829064	TGTAGTCACTTGTTGAAATGCC	57.171	40.909	0.00	0.00	35.39	4.40
1511	1654	6.015504	CGTATGTAGTCACTTGTTGAAATGC	58.984	40.000	0.00	0.00	35.39	3.56
1512	1655	6.367695	TCCGTATGTAGTCACTTGTTGAAATG	59.632	38.462	0.00	0.00	35.39	2.32
1513	1656	6.460781	TCCGTATGTAGTCACTTGTTGAAAT	58.539	36.000	0.00	0.00	35.39	2.17
1514	1657	5.845103	TCCGTATGTAGTCACTTGTTGAAA	58.155	37.500	0.00	0.00	35.39	2.69
1515	1658	5.456548	TCCGTATGTAGTCACTTGTTGAA	57.543	39.130	0.00	0.00	35.39	2.69
1516	1659	4.617530	GCTCCGTATGTAGTCACTTGTTGA	60.618	45.833	0.00	0.00	0.00	3.18
1517	1660	3.612860	GCTCCGTATGTAGTCACTTGTTG	59.387	47.826	0.00	0.00	0.00	3.33
1518	1661	3.257375	TGCTCCGTATGTAGTCACTTGTT	59.743	43.478	0.00	0.00	0.00	2.83
1519	1662	2.823747	TGCTCCGTATGTAGTCACTTGT	59.176	45.455	0.00	0.00	0.00	3.16
1520	1663	3.503827	TGCTCCGTATGTAGTCACTTG	57.496	47.619	0.00	0.00	0.00	3.16
1521	1664	4.530710	TTTGCTCCGTATGTAGTCACTT	57.469	40.909	0.00	0.00	0.00	3.16
1522	1665	4.530710	TTTTGCTCCGTATGTAGTCACT	57.469	40.909	0.00	0.00	0.00	3.41
1523	1666	4.868171	TCATTTTGCTCCGTATGTAGTCAC	59.132	41.667	0.00	0.00	0.00	3.67
1524	1667	5.079689	TCATTTTGCTCCGTATGTAGTCA	57.920	39.130	0.00	0.00	0.00	3.41
1525	1668	5.005779	CACTCATTTTGCTCCGTATGTAGTC	59.994	44.000	0.00	0.00	0.00	2.59
1526	1669	4.870426	CACTCATTTTGCTCCGTATGTAGT	59.130	41.667	0.00	0.00	0.00	2.73
1527	1670	5.109210	TCACTCATTTTGCTCCGTATGTAG	58.891	41.667	0.00	0.00	0.00	2.74
1528	1671	5.079689	TCACTCATTTTGCTCCGTATGTA	57.920	39.130	0.00	0.00	0.00	2.29
1529	1672	3.937814	TCACTCATTTTGCTCCGTATGT	58.062	40.909	0.00	0.00	0.00	2.29
1530	1673	4.944962	TTCACTCATTTTGCTCCGTATG	57.055	40.909	0.00	0.00	0.00	2.39
1531	1674	6.515272	AAATTCACTCATTTTGCTCCGTAT	57.485	33.333	0.00	0.00	0.00	3.06
1532	1675	5.957842	AAATTCACTCATTTTGCTCCGTA	57.042	34.783	0.00	0.00	0.00	4.02
1533	1676	4.853924	AAATTCACTCATTTTGCTCCGT	57.146	36.364	0.00	0.00	0.00	4.69
1534	1677	7.697691	AGTATAAATTCACTCATTTTGCTCCG	58.302	34.615	0.00	0.00	0.00	4.63
1535	1678	9.860898	AAAGTATAAATTCACTCATTTTGCTCC	57.139	29.630	0.00	0.00	0.00	4.70
1606	1749	9.595823	CCGTTCCTAAATATTTGTCTTTCTAGA	57.404	33.333	11.05	0.00	0.00	2.43
1607	1750	9.595823	TCCGTTCCTAAATATTTGTCTTTCTAG	57.404	33.333	11.05	0.00	0.00	2.43
1608	1751	9.595823	CTCCGTTCCTAAATATTTGTCTTTCTA	57.404	33.333	11.05	0.00	0.00	2.10
1609	1752	7.553044	CCTCCGTTCCTAAATATTTGTCTTTCT	59.447	37.037	11.05	0.00	0.00	2.52
1610	1753	7.201705	CCCTCCGTTCCTAAATATTTGTCTTTC	60.202	40.741	11.05	0.00	0.00	2.62
1611	1754	6.602009	CCCTCCGTTCCTAAATATTTGTCTTT	59.398	38.462	11.05	0.00	0.00	2.52
1612	1755	6.069847	TCCCTCCGTTCCTAAATATTTGTCTT	60.070	38.462	11.05	0.00	0.00	3.01
1613	1756	5.427481	TCCCTCCGTTCCTAAATATTTGTCT	59.573	40.000	11.05	0.00	0.00	3.41
1614	1757	5.677567	TCCCTCCGTTCCTAAATATTTGTC	58.322	41.667	11.05	0.00	0.00	3.18
1615	1758	5.191124	ACTCCCTCCGTTCCTAAATATTTGT	59.809	40.000	11.05	0.00	0.00	2.83
1616	1759	5.681639	ACTCCCTCCGTTCCTAAATATTTG	58.318	41.667	11.05	1.40	0.00	2.32
1617	1760	5.970501	ACTCCCTCCGTTCCTAAATATTT	57.029	39.130	5.89	5.89	0.00	1.40
1618	1761	6.141790	ACTACTCCCTCCGTTCCTAAATATT	58.858	40.000	0.00	0.00	0.00	1.28
1619	1762	5.713807	ACTACTCCCTCCGTTCCTAAATAT	58.286	41.667	0.00	0.00	0.00	1.28
1620	1763	5.134725	ACTACTCCCTCCGTTCCTAAATA	57.865	43.478	0.00	0.00	0.00	1.40
1621	1764	3.991683	ACTACTCCCTCCGTTCCTAAAT	58.008	45.455	0.00	0.00	0.00	1.40
1622	1765	3.463048	ACTACTCCCTCCGTTCCTAAA	57.537	47.619	0.00	0.00	0.00	1.85
1623	1766	3.266772	TGTACTACTCCCTCCGTTCCTAA	59.733	47.826	0.00	0.00	0.00	2.69
1624	1767	2.846206	TGTACTACTCCCTCCGTTCCTA	59.154	50.000	0.00	0.00	0.00	2.94
1625	1768	1.637553	TGTACTACTCCCTCCGTTCCT	59.362	52.381	0.00	0.00	0.00	3.36
1626	1769	2.134789	TGTACTACTCCCTCCGTTCC	57.865	55.000	0.00	0.00	0.00	3.62
1627	1770	5.301298	ACATAATGTACTACTCCCTCCGTTC	59.699	44.000	0.00	0.00	0.00	3.95
1628	1771	5.206587	ACATAATGTACTACTCCCTCCGTT	58.793	41.667	0.00	0.00	0.00	4.44
1629	1772	4.801164	ACATAATGTACTACTCCCTCCGT	58.199	43.478	0.00	0.00	0.00	4.69
1630	1773	6.853720	CATACATAATGTACTACTCCCTCCG	58.146	44.000	0.00	0.00	35.42	4.63
1644	1787	7.272299	GCTACAGATCGTGAGACATACATAATG	59.728	40.741	1.23	0.00	46.97	1.90
1695	1843	0.963225	TCCAACCGATTCAGACGTCA	59.037	50.000	19.50	0.00	0.00	4.35
1706	1854	0.911769	AGGATGCTCATTCCAACCGA	59.088	50.000	0.00	0.00	31.17	4.69
1761	1909	6.092122	CCGAAATAGAGTAAGCACAAATGACA	59.908	38.462	0.00	0.00	0.00	3.58
1762	1910	6.092259	ACCGAAATAGAGTAAGCACAAATGAC	59.908	38.462	0.00	0.00	0.00	3.06
1853	2005	3.054508	AGAAAGCAAGAGGAAGGAGATGG	60.055	47.826	0.00	0.00	0.00	3.51
1911	2077	1.115467	GATCCGTGGAGTCCATGACT	58.885	55.000	29.69	17.19	46.42	3.41
1931	2097	1.747709	CAGAGGGCTCTTGTCCAATG	58.252	55.000	0.00	0.00	41.31	2.82
1971	2137	1.518903	GGACAGCACAAACCTCCTGC	61.519	60.000	0.00	0.00	0.00	4.85
1987	2153	0.043485	AGAGAAAGGGGGAGAGGGAC	59.957	60.000	0.00	0.00	0.00	4.46
1992	2158	0.684805	GCGAGAGAGAAAGGGGGAGA	60.685	60.000	0.00	0.00	0.00	3.71
1996	2162	1.153745	CGTGCGAGAGAGAAAGGGG	60.154	63.158	0.00	0.00	0.00	4.79
2008	2174	1.929806	AAGGTGATACTCGCGTGCGA	61.930	55.000	16.78	16.78	46.87	5.10
2009	2175	1.516386	AAGGTGATACTCGCGTGCG	60.516	57.895	5.77	8.14	41.35	5.34
2010	2176	1.999051	CAAGGTGATACTCGCGTGC	59.001	57.895	5.77	0.00	0.00	5.34
2011	2177	1.742900	CGCAAGGTGATACTCGCGTG	61.743	60.000	5.77	6.24	38.03	5.34
2012	2178	1.516386	CGCAAGGTGATACTCGCGT	60.516	57.895	5.77	0.00	38.03	6.01
2013	2179	1.202973	CTCGCAAGGTGATACTCGCG	61.203	60.000	0.00	0.00	43.80	5.87
2014	2180	0.872021	CCTCGCAAGGTGATACTCGC	60.872	60.000	0.00	0.00	37.94	5.03
2015	2181	0.872021	GCCTCGCAAGGTGATACTCG	60.872	60.000	0.00	0.00	45.34	4.18
2016	2182	0.461961	AGCCTCGCAAGGTGATACTC	59.538	55.000	0.00	0.00	45.34	2.59
2017	2183	0.905357	AAGCCTCGCAAGGTGATACT	59.095	50.000	0.00	0.00	45.34	2.12
2018	2184	1.009829	CAAGCCTCGCAAGGTGATAC	58.990	55.000	0.00	0.00	45.34	2.24
2019	2185	0.744414	GCAAGCCTCGCAAGGTGATA	60.744	55.000	0.00	0.00	45.34	2.15
2020	2186	2.042831	GCAAGCCTCGCAAGGTGAT	61.043	57.895	0.00	0.00	45.34	3.06
2021	2187	2.669569	GCAAGCCTCGCAAGGTGA	60.670	61.111	0.00	0.00	45.34	4.02
2022	2188	2.263741	AAGCAAGCCTCGCAAGGTG	61.264	57.895	0.00	0.00	45.34	4.00
2023	2189	2.113986	AAGCAAGCCTCGCAAGGT	59.886	55.556	0.00	0.00	45.34	3.50
2024	2190	2.263741	ACAAGCAAGCCTCGCAAGG	61.264	57.895	0.00	0.00	46.44	3.61
2025	2191	1.081641	CACAAGCAAGCCTCGCAAG	60.082	57.895	0.00	0.00	0.00	4.01
2026	2192	3.033184	CACAAGCAAGCCTCGCAA	58.967	55.556	0.00	0.00	0.00	4.85
2027	2193	3.663176	GCACAAGCAAGCCTCGCA	61.663	61.111	0.00	0.00	41.58	5.10
2028	2194	4.748679	CGCACAAGCAAGCCTCGC	62.749	66.667	0.00	0.00	42.27	5.03
2029	2195	2.606961	TTCGCACAAGCAAGCCTCG	61.607	57.895	0.00	0.00	42.27	4.63
2030	2196	1.081840	GTTCGCACAAGCAAGCCTC	60.082	57.895	0.00	0.00	42.27	4.70
2038	2204	1.933181	TGACAACAGAGTTCGCACAAG	59.067	47.619	0.00	0.00	0.00	3.16
2055	2221	9.270640	AGAGCAAAATCTGAATACATATCTGAC	57.729	33.333	0.00	0.00	0.00	3.51
2130	2353	5.390991	GGAAATTGTCGAGCTGTTTAGAAGG	60.391	44.000	0.00	0.00	0.00	3.46
2150	2373	5.734855	GCTTCGATAACTAAGCATGGAAA	57.265	39.130	4.62	0.00	45.89	3.13
2157	2380	5.975410	ACTTCATGCTTCGATAACTAAGC	57.025	39.130	2.70	2.70	46.60	3.09
2158	2381	9.249457	TCAATACTTCATGCTTCGATAACTAAG	57.751	33.333	0.00	0.00	0.00	2.18
2159	2382	9.249457	CTCAATACTTCATGCTTCGATAACTAA	57.751	33.333	0.00	0.00	0.00	2.24
2160	2383	8.630037	TCTCAATACTTCATGCTTCGATAACTA	58.370	33.333	0.00	0.00	0.00	2.24
2161	2384	7.436673	GTCTCAATACTTCATGCTTCGATAACT	59.563	37.037	0.00	0.00	0.00	2.24
2162	2385	7.436673	AGTCTCAATACTTCATGCTTCGATAAC	59.563	37.037	0.00	0.00	0.00	1.89
2163	2386	7.492524	AGTCTCAATACTTCATGCTTCGATAA	58.507	34.615	0.00	0.00	0.00	1.75
2164	2387	7.043961	AGTCTCAATACTTCATGCTTCGATA	57.956	36.000	0.00	0.00	0.00	2.92
2165	2388	5.911752	AGTCTCAATACTTCATGCTTCGAT	58.088	37.500	0.00	0.00	0.00	3.59
2166	2389	5.330455	AGTCTCAATACTTCATGCTTCGA	57.670	39.130	0.00	0.00	0.00	3.71
2167	2390	5.726138	GCAAGTCTCAATACTTCATGCTTCG	60.726	44.000	0.00	0.00	37.61	3.79
2168	2391	5.353678	AGCAAGTCTCAATACTTCATGCTTC	59.646	40.000	0.00	0.00	37.66	3.86
2169	2392	5.251764	AGCAAGTCTCAATACTTCATGCTT	58.748	37.500	0.00	0.00	37.66	3.91
2170	2393	4.841422	AGCAAGTCTCAATACTTCATGCT	58.159	39.130	0.00	0.00	37.61	3.79
2171	2394	4.034975	GGAGCAAGTCTCAATACTTCATGC	59.965	45.833	0.00	0.00	43.70	4.06
2172	2395	4.574013	GGGAGCAAGTCTCAATACTTCATG	59.426	45.833	0.00	0.00	43.70	3.07
2173	2396	4.472833	AGGGAGCAAGTCTCAATACTTCAT	59.527	41.667	0.00	0.00	43.70	2.57
2174	2397	3.840666	AGGGAGCAAGTCTCAATACTTCA	59.159	43.478	0.00	0.00	43.70	3.02
2175	2398	4.438148	GAGGGAGCAAGTCTCAATACTTC	58.562	47.826	0.00	0.00	43.70	3.01
2176	2399	3.198853	GGAGGGAGCAAGTCTCAATACTT	59.801	47.826	0.00	0.00	43.70	2.24
2177	2400	2.769095	GGAGGGAGCAAGTCTCAATACT	59.231	50.000	0.00	0.00	43.70	2.12
2178	2401	2.482142	CGGAGGGAGCAAGTCTCAATAC	60.482	54.545	0.00	0.00	43.70	1.89
2179	2402	1.757118	CGGAGGGAGCAAGTCTCAATA	59.243	52.381	0.00	0.00	43.70	1.90
2180	2403	0.539051	CGGAGGGAGCAAGTCTCAAT	59.461	55.000	0.00	0.00	43.70	2.57
2181	2404	0.832135	ACGGAGGGAGCAAGTCTCAA	60.832	55.000	0.00	0.00	43.70	3.02
2182	2405	0.832135	AACGGAGGGAGCAAGTCTCA	60.832	55.000	0.00	0.00	43.70	3.27
2183	2406	0.108567	GAACGGAGGGAGCAAGTCTC	60.109	60.000	0.00	0.00	41.15	3.36
2184	2407	0.832135	TGAACGGAGGGAGCAAGTCT	60.832	55.000	0.00	0.00	0.00	3.24
2185	2408	0.670854	GTGAACGGAGGGAGCAAGTC	60.671	60.000	0.00	0.00	0.00	3.01
2186	2409	1.371558	GTGAACGGAGGGAGCAAGT	59.628	57.895	0.00	0.00	0.00	3.16
2187	2410	0.250295	TTGTGAACGGAGGGAGCAAG	60.250	55.000	0.00	0.00	0.00	4.01
2188	2411	0.181587	TTTGTGAACGGAGGGAGCAA	59.818	50.000	0.00	0.00	0.00	3.91
2189	2412	0.400213	ATTTGTGAACGGAGGGAGCA	59.600	50.000	0.00	0.00	0.00	4.26
2190	2413	2.396590	TATTTGTGAACGGAGGGAGC	57.603	50.000	0.00	0.00	0.00	4.70
2191	2414	5.914033	TCTTATATTTGTGAACGGAGGGAG	58.086	41.667	0.00	0.00	0.00	4.30
2192	2415	5.943349	TCTTATATTTGTGAACGGAGGGA	57.057	39.130	0.00	0.00	0.00	4.20
2193	2416	6.055588	ACATCTTATATTTGTGAACGGAGGG	58.944	40.000	0.00	0.00	0.00	4.30
2194	2417	8.548721	GTTACATCTTATATTTGTGAACGGAGG	58.451	37.037	0.00	0.00	0.00	4.30
2195	2418	9.093970	TGTTACATCTTATATTTGTGAACGGAG	57.906	33.333	0.00	0.00	0.00	4.63
2196	2419	9.438228	TTGTTACATCTTATATTTGTGAACGGA	57.562	29.630	0.00	0.00	0.00	4.69
2197	2420	9.485591	GTTGTTACATCTTATATTTGTGAACGG	57.514	33.333	0.00	0.00	0.00	4.44
2243	2466	9.231297	AGCAAACACACTAAAACATGTCTATAT	57.769	29.630	0.00	0.00	0.00	0.86
2244	2467	8.615878	AGCAAACACACTAAAACATGTCTATA	57.384	30.769	0.00	0.00	0.00	1.31
2245	2468	7.228507	TGAGCAAACACACTAAAACATGTCTAT	59.771	33.333	0.00	0.00	0.00	1.98
2246	2469	6.540551	TGAGCAAACACACTAAAACATGTCTA	59.459	34.615	0.00	0.00	0.00	2.59
2247	2470	5.356751	TGAGCAAACACACTAAAACATGTCT	59.643	36.000	0.00	0.00	0.00	3.41
2248	2471	5.455525	GTGAGCAAACACACTAAAACATGTC	59.544	40.000	0.00	0.00	40.11	3.06
2249	2472	5.125417	AGTGAGCAAACACACTAAAACATGT	59.875	36.000	0.00	0.00	44.60	3.21
2250	2473	5.581605	AGTGAGCAAACACACTAAAACATG	58.418	37.500	0.00	0.00	44.60	3.21
2251	2474	5.356751	TGAGTGAGCAAACACACTAAAACAT	59.643	36.000	0.00	0.00	46.12	2.71
2252	2475	4.697828	TGAGTGAGCAAACACACTAAAACA	59.302	37.500	0.00	0.00	46.12	2.83
2253	2476	5.229921	TGAGTGAGCAAACACACTAAAAC	57.770	39.130	0.00	0.00	46.12	2.43
2254	2477	6.449635	AATGAGTGAGCAAACACACTAAAA	57.550	33.333	0.00	0.00	46.12	1.52
2255	2478	6.094742	TGAAATGAGTGAGCAAACACACTAAA	59.905	34.615	0.00	0.00	46.12	1.85
2256	2479	5.588246	TGAAATGAGTGAGCAAACACACTAA	59.412	36.000	0.00	0.00	46.12	2.24
2257	2480	5.122519	TGAAATGAGTGAGCAAACACACTA	58.877	37.500	0.00	0.00	46.12	2.74
2259	2482	4.201950	ACTGAAATGAGTGAGCAAACACAC	60.202	41.667	10.34	0.00	42.45	3.82
2260	2483	3.947196	ACTGAAATGAGTGAGCAAACACA	59.053	39.130	10.34	2.21	42.45	3.72
2261	2484	4.531332	GACTGAAATGAGTGAGCAAACAC	58.469	43.478	0.00	0.00	40.60	3.32
2262	2485	3.565482	GGACTGAAATGAGTGAGCAAACA	59.435	43.478	0.00	0.00	0.00	2.83
2263	2486	3.364366	CGGACTGAAATGAGTGAGCAAAC	60.364	47.826	0.00	0.00	0.00	2.93
2264	2487	2.807967	CGGACTGAAATGAGTGAGCAAA	59.192	45.455	0.00	0.00	0.00	3.68
2265	2488	2.224281	ACGGACTGAAATGAGTGAGCAA	60.224	45.455	0.00	0.00	0.00	3.91
2266	2489	1.344438	ACGGACTGAAATGAGTGAGCA	59.656	47.619	0.00	0.00	0.00	4.26
2267	2490	2.086054	ACGGACTGAAATGAGTGAGC	57.914	50.000	0.00	0.00	0.00	4.26
2268	2491	4.748892	ACATACGGACTGAAATGAGTGAG	58.251	43.478	7.93	0.00	0.00	3.51
2269	2492	4.801330	ACATACGGACTGAAATGAGTGA	57.199	40.909	7.93	0.00	0.00	3.41
2270	2493	5.651530	AGTACATACGGACTGAAATGAGTG	58.348	41.667	0.00	0.00	0.00	3.51
2271	2494	5.163540	GGAGTACATACGGACTGAAATGAGT	60.164	44.000	0.00	0.00	0.00	3.41
2272	2495	5.163550	TGGAGTACATACGGACTGAAATGAG	60.164	44.000	0.00	0.00	0.00	2.90
2273	2496	4.707934	TGGAGTACATACGGACTGAAATGA	59.292	41.667	0.00	0.00	0.00	2.57
2274	2497	5.006153	TGGAGTACATACGGACTGAAATG	57.994	43.478	0.00	0.00	0.00	2.32
2275	2498	5.871396	ATGGAGTACATACGGACTGAAAT	57.129	39.130	0.00	0.00	38.26	2.17
2276	2499	6.971726	ATATGGAGTACATACGGACTGAAA	57.028	37.500	0.00	0.00	44.41	2.69
2277	2500	6.971726	AATATGGAGTACATACGGACTGAA	57.028	37.500	0.00	0.00	44.41	3.02
2278	2501	8.467963	TTTAATATGGAGTACATACGGACTGA	57.532	34.615	0.00	0.00	44.41	3.41
2313	2536	9.160496	GCTCCCTCTGTTCATAAATATAAGATG	57.840	37.037	0.00	0.00	0.00	2.90
2314	2537	8.884323	TGCTCCCTCTGTTCATAAATATAAGAT	58.116	33.333	0.00	0.00	0.00	2.40
2315	2538	8.262601	TGCTCCCTCTGTTCATAAATATAAGA	57.737	34.615	0.00	0.00	0.00	2.10
2316	2539	8.908786	TTGCTCCCTCTGTTCATAAATATAAG	57.091	34.615	0.00	0.00	0.00	1.73
2317	2540	9.866655	AATTGCTCCCTCTGTTCATAAATATAA	57.133	29.630	0.00	0.00	0.00	0.98
2319	2542	9.866655	TTAATTGCTCCCTCTGTTCATAAATAT	57.133	29.630	0.00	0.00	0.00	1.28
2320	2543	9.693739	TTTAATTGCTCCCTCTGTTCATAAATA	57.306	29.630	0.00	0.00	0.00	1.40
2321	2544	8.593945	TTTAATTGCTCCCTCTGTTCATAAAT	57.406	30.769	0.00	0.00	0.00	1.40
2322	2545	8.593945	ATTTAATTGCTCCCTCTGTTCATAAA	57.406	30.769	0.00	0.00	0.00	1.40
2323	2546	8.593945	AATTTAATTGCTCCCTCTGTTCATAA	57.406	30.769	0.00	0.00	0.00	1.90
2324	2547	8.593945	AAATTTAATTGCTCCCTCTGTTCATA	57.406	30.769	0.00	0.00	0.00	2.15
2325	2548	7.178983	TGAAATTTAATTGCTCCCTCTGTTCAT	59.821	33.333	0.00	0.00	0.00	2.57
2326	2549	6.493115	TGAAATTTAATTGCTCCCTCTGTTCA	59.507	34.615	0.00	0.00	0.00	3.18
2327	2550	6.924111	TGAAATTTAATTGCTCCCTCTGTTC	58.076	36.000	0.00	0.00	0.00	3.18
2328	2551	6.916360	TGAAATTTAATTGCTCCCTCTGTT	57.084	33.333	0.00	0.00	0.00	3.16
2329	2552	6.916360	TTGAAATTTAATTGCTCCCTCTGT	57.084	33.333	0.00	0.00	0.00	3.41
2330	2553	7.605449	TCTTTGAAATTTAATTGCTCCCTCTG	58.395	34.615	0.00	0.00	0.00	3.35
2331	2554	7.781324	TCTTTGAAATTTAATTGCTCCCTCT	57.219	32.000	0.00	0.00	0.00	3.69
2332	2555	8.831715	TTTCTTTGAAATTTAATTGCTCCCTC	57.168	30.769	0.00	0.00	0.00	4.30
2333	2556	9.056005	GTTTTCTTTGAAATTTAATTGCTCCCT	57.944	29.630	0.00	0.00	0.00	4.20
2334	2557	9.056005	AGTTTTCTTTGAAATTTAATTGCTCCC	57.944	29.630	0.00	0.00	0.00	4.30
2388	2633	0.971386	GGGAGTACGAACAGGGTTCA	59.029	55.000	9.50	0.00	0.00	3.18
2394	2639	0.450983	GACGGAGGGAGTACGAACAG	59.549	60.000	0.00	0.00	0.00	3.16
2395	2640	0.962356	GGACGGAGGGAGTACGAACA	60.962	60.000	0.00	0.00	0.00	3.18
2396	2641	1.805910	GGACGGAGGGAGTACGAAC	59.194	63.158	0.00	0.00	0.00	3.95
2399	2644	3.207669	CCGGACGGAGGGAGTACG	61.208	72.222	4.40	0.00	44.88	3.67
2400	2645	0.967380	TTTCCGGACGGAGGGAGTAC	60.967	60.000	13.64	0.00	46.06	2.73
2401	2646	0.032813	ATTTCCGGACGGAGGGAGTA	60.033	55.000	13.64	0.00	46.06	2.59
2402	2647	0.032813	TATTTCCGGACGGAGGGAGT	60.033	55.000	13.64	0.00	46.06	3.85
2403	2648	0.388294	GTATTTCCGGACGGAGGGAG	59.612	60.000	13.64	0.00	46.06	4.30
2404	2649	0.032813	AGTATTTCCGGACGGAGGGA	60.033	55.000	13.64	4.95	46.06	4.20
2405	2650	0.828677	AAGTATTTCCGGACGGAGGG	59.171	55.000	13.64	0.00	46.06	4.30
2406	2651	1.206371	ACAAGTATTTCCGGACGGAGG	59.794	52.381	13.64	0.00	46.06	4.30
2407	2652	2.537401	GACAAGTATTTCCGGACGGAG	58.463	52.381	13.64	3.15	46.06	4.63
2409	2654	1.206371	AGGACAAGTATTTCCGGACGG	59.794	52.381	1.83	3.96	36.95	4.79
2410	2655	2.667473	AGGACAAGTATTTCCGGACG	57.333	50.000	1.83	0.00	36.95	4.79
2411	2656	4.996788	TCTAGGACAAGTATTTCCGGAC	57.003	45.455	1.83	0.00	36.95	4.79
2412	2657	6.155565	TCATTTCTAGGACAAGTATTTCCGGA	59.844	38.462	0.00	0.00	36.95	5.14
2413	2658	6.346096	TCATTTCTAGGACAAGTATTTCCGG	58.654	40.000	0.00	0.00	36.95	5.14
2414	2659	8.338259	CAATCATTTCTAGGACAAGTATTTCCG	58.662	37.037	0.00	0.00	36.95	4.30
2415	2660	9.178758	ACAATCATTTCTAGGACAAGTATTTCC	57.821	33.333	0.00	0.00	0.00	3.13
2424	2669	8.861086	GGTCTAGATACAATCATTTCTAGGACA	58.139	37.037	0.00	0.00	38.67	4.02
2425	2670	9.084533	AGGTCTAGATACAATCATTTCTAGGAC	57.915	37.037	0.00	3.38	38.67	3.85
2430	2675	9.084533	GTCCTAGGTCTAGATACAATCATTTCT	57.915	37.037	9.08	0.00	35.21	2.52
2431	2676	8.861086	TGTCCTAGGTCTAGATACAATCATTTC	58.139	37.037	9.08	0.00	35.21	2.17
2432	2677	8.783660	TGTCCTAGGTCTAGATACAATCATTT	57.216	34.615	9.08	0.00	35.21	2.32
2433	2678	8.783660	TTGTCCTAGGTCTAGATACAATCATT	57.216	34.615	9.08	0.00	35.70	2.57
2434	2679	8.007742	ACTTGTCCTAGGTCTAGATACAATCAT	58.992	37.037	20.46	4.48	37.76	2.45
2435	2680	7.355101	ACTTGTCCTAGGTCTAGATACAATCA	58.645	38.462	20.46	0.00	37.76	2.57
2436	2681	7.826918	ACTTGTCCTAGGTCTAGATACAATC	57.173	40.000	20.46	0.00	37.76	2.67
2437	2682	9.884814	AATACTTGTCCTAGGTCTAGATACAAT	57.115	33.333	20.46	9.55	37.76	2.71
2438	2683	9.710818	AAATACTTGTCCTAGGTCTAGATACAA	57.289	33.333	20.46	14.68	36.95	2.41
2439	2684	9.352191	GAAATACTTGTCCTAGGTCTAGATACA	57.648	37.037	20.46	8.51	35.21	2.29
2440	2685	8.795513	GGAAATACTTGTCCTAGGTCTAGATAC	58.204	40.741	20.46	6.10	35.21	2.24
2441	2686	7.664731	CGGAAATACTTGTCCTAGGTCTAGATA	59.335	40.741	20.46	11.27	35.21	1.98
2442	2687	6.490721	CGGAAATACTTGTCCTAGGTCTAGAT	59.509	42.308	20.46	9.39	35.21	1.98
2443	2688	5.826737	CGGAAATACTTGTCCTAGGTCTAGA	59.173	44.000	20.46	7.84	35.21	2.43
2444	2689	5.009811	CCGGAAATACTTGTCCTAGGTCTAG	59.990	48.000	9.08	12.06	0.00	2.43
2445	2690	4.891756	CCGGAAATACTTGTCCTAGGTCTA	59.108	45.833	9.08	0.00	0.00	2.59
2446	2691	3.705072	CCGGAAATACTTGTCCTAGGTCT	59.295	47.826	9.08	0.00	0.00	3.85
2447	2692	3.703052	TCCGGAAATACTTGTCCTAGGTC	59.297	47.826	9.08	3.43	0.00	3.85
2448	2693	3.450096	GTCCGGAAATACTTGTCCTAGGT	59.550	47.826	5.23	0.00	0.00	3.08
2449	2694	3.490419	CGTCCGGAAATACTTGTCCTAGG	60.490	52.174	5.23	0.82	0.00	3.02
2450	2695	3.490419	CCGTCCGGAAATACTTGTCCTAG	60.490	52.174	5.23	0.00	37.50	3.02
2451	2696	2.428171	CCGTCCGGAAATACTTGTCCTA	59.572	50.000	5.23	0.00	37.50	2.94
2452	2697	1.206371	CCGTCCGGAAATACTTGTCCT	59.794	52.381	5.23	0.00	37.50	3.85
2453	2698	1.205417	TCCGTCCGGAAATACTTGTCC	59.795	52.381	5.23	0.00	42.05	4.02
2454	2699	2.537401	CTCCGTCCGGAAATACTTGTC	58.463	52.381	5.23	0.00	44.66	3.18
2455	2700	1.206371	CCTCCGTCCGGAAATACTTGT	59.794	52.381	5.23	0.00	44.66	3.16
2456	2701	1.472728	CCCTCCGTCCGGAAATACTTG	60.473	57.143	5.23	0.00	44.66	3.16
2457	2702	0.828677	CCCTCCGTCCGGAAATACTT	59.171	55.000	5.23	0.00	44.66	2.24
2458	2703	0.032813	TCCCTCCGTCCGGAAATACT	60.033	55.000	5.23	0.00	44.66	2.12
2459	2704	0.388294	CTCCCTCCGTCCGGAAATAC	59.612	60.000	5.23	0.00	44.66	1.89
2460	2705	0.032813	ACTCCCTCCGTCCGGAAATA	60.033	55.000	5.23	0.00	44.66	1.40
2461	2706	0.032813	TACTCCCTCCGTCCGGAAAT	60.033	55.000	5.23	0.00	44.66	2.17
2462	2707	0.967380	GTACTCCCTCCGTCCGGAAA	60.967	60.000	5.23	0.00	44.66	3.13
2463	2708	1.379044	GTACTCCCTCCGTCCGGAA	60.379	63.158	5.23	0.00	44.66	4.30
2464	2709	1.856539	AAGTACTCCCTCCGTCCGGA	61.857	60.000	0.00	0.00	42.90	5.14
2465	2710	0.107017	TAAGTACTCCCTCCGTCCGG	60.107	60.000	0.00	0.00	0.00	5.14
2466	2711	1.755179	TTAAGTACTCCCTCCGTCCG	58.245	55.000	0.00	0.00	0.00	4.79
2467	2712	4.646492	TGTTATTAAGTACTCCCTCCGTCC	59.354	45.833	0.00	0.00	0.00	4.79
2468	2713	5.126061	TGTGTTATTAAGTACTCCCTCCGTC	59.874	44.000	0.00	0.00	0.00	4.79
2469	2714	5.018809	TGTGTTATTAAGTACTCCCTCCGT	58.981	41.667	0.00	0.00	0.00	4.69
2470	2715	5.359009	TCTGTGTTATTAAGTACTCCCTCCG	59.641	44.000	0.00	0.00	0.00	4.63
2471	2716	6.786967	TCTGTGTTATTAAGTACTCCCTCC	57.213	41.667	0.00	0.00	0.00	4.30
2538	2783	7.916450	GCGTATAATAAGTATGGCTAAGGAGAG	59.084	40.741	0.00	0.00	0.00	3.20
2539	2784	7.395206	TGCGTATAATAAGTATGGCTAAGGAGA	59.605	37.037	0.00	0.00	0.00	3.71
2540	2785	7.544622	TGCGTATAATAAGTATGGCTAAGGAG	58.455	38.462	0.00	0.00	0.00	3.69
2541	2786	7.470935	TGCGTATAATAAGTATGGCTAAGGA	57.529	36.000	0.00	0.00	0.00	3.36
2562	2810	3.484649	GCAGTCAGAATAAATTGCATGCG	59.515	43.478	14.09	0.00	0.00	4.73
2594	2842	4.043750	CGACCGTAAACAGTACTTTCACA	58.956	43.478	0.00	0.00	0.00	3.58
2612	2860	4.276431	TCAAAATTAACAAGGACACCGACC	59.724	41.667	0.00	0.00	0.00	4.79
2705	2953	3.427528	GTCACAAAAGAATCGAGTACGCA	59.572	43.478	0.00	0.00	39.58	5.24
2723	2971	5.699915	GGTAAGTAGAACCAAAGAAGGTCAC	59.300	44.000	0.00	0.00	42.25	3.67
2900	3151	8.950210	AGTAACCATAATGAACATGAGAAAGTG	58.050	33.333	0.00	0.00	0.00	3.16
2903	3154	9.739276	AGAAGTAACCATAATGAACATGAGAAA	57.261	29.630	0.00	0.00	0.00	2.52
2906	3157	7.281774	AGCAGAAGTAACCATAATGAACATGAG	59.718	37.037	0.00	0.00	0.00	2.90
2944	3195	4.055360	TGTATATTCCGTGGAATTCTGCG	58.945	43.478	18.62	9.87	41.55	5.18
2979	3230	3.338249	CAGGATGACCACTGGTACAAAG	58.662	50.000	0.00	0.00	39.69	2.77
3009	3260	3.610911	CCTTCCAGTTCCCTGTATGTTC	58.389	50.000	0.00	0.00	36.95	3.18
3161	3453	7.907214	AAGAGTGTGAAATATAAGTGTCACC	57.093	36.000	0.00	0.00	39.72	4.02
3191	3484	8.356657	GGACTCTGGATGTATATCAGTATATGC	58.643	40.741	1.63	0.00	34.90	3.14
3305	4124	7.435068	TTCTAGTGTCAAATTAACCAAGAGC	57.565	36.000	0.00	0.00	0.00	4.09
3352	4171	6.688578	TCGCTTTCTGTTAGATCTTACAGTT	58.311	36.000	30.77	0.00	41.87	3.16
3463	4282	6.147492	GCAGCATCCAAATTTGTTTCATGTAA	59.853	34.615	16.73	0.00	0.00	2.41
3489	4308	1.337703	TGCCAAGTTGCAACATGTCTC	59.662	47.619	30.11	18.55	38.56	3.36
3528	4347	1.831652	CGAAGGCTCCAACCAGAGGT	61.832	60.000	0.00	0.00	37.65	3.85
3558	4377	1.685517	GTCCGGTACTTCCCCAGATAC	59.314	57.143	0.00	0.00	0.00	2.24
3625	4445	8.571461	TTCTGAATCATAAATGAGCAAGAGTT	57.429	30.769	0.00	0.00	40.64	3.01
3630	4450	9.187996	TGGTTATTCTGAATCATAAATGAGCAA	57.812	29.630	6.10	0.00	40.64	3.91
3675	4495	9.178758	GGATCTCCACTGACAGTAATTATTTTT	57.821	33.333	8.02	0.00	35.64	1.94
3676	4496	8.552296	AGGATCTCCACTGACAGTAATTATTTT	58.448	33.333	8.02	0.00	38.89	1.82
3684	4511	4.864483	AGTAGGATCTCCACTGACAGTA	57.136	45.455	8.02	0.00	38.89	2.74
3692	4519	2.573369	TCAGCGTAGTAGGATCTCCAC	58.427	52.381	0.00	0.00	38.89	4.02
3693	4520	3.292492	TTCAGCGTAGTAGGATCTCCA	57.708	47.619	0.00	0.00	38.89	3.86
3723	4550	9.916360	ATTTACGGAGGGAGTAATAAAGATTTT	57.084	29.630	0.00	0.00	34.50	1.82
3735	4562	8.312564	GCTCTTATATTTATTTACGGAGGGAGT	58.687	37.037	0.00	0.00	0.00	3.85
3736	4563	7.488471	CGCTCTTATATTTATTTACGGAGGGAG	59.512	40.741	0.00	0.00	34.63	4.30
3737	4564	7.039504	ACGCTCTTATATTTATTTACGGAGGGA	60.040	37.037	0.00	0.00	35.94	4.20
3738	4565	7.095270	ACGCTCTTATATTTATTTACGGAGGG	58.905	38.462	0.00	0.00	37.30	4.30
3739	4566	8.530269	AACGCTCTTATATTTATTTACGGAGG	57.470	34.615	0.00	0.00	0.00	4.30
3790	4617	8.197592	TCCCTCCGTAAATAAATATAAGAGCA	57.802	34.615	0.00	0.00	0.00	4.26
3791	4618	8.312564	ACTCCCTCCGTAAATAAATATAAGAGC	58.687	37.037	0.00	0.00	0.00	4.09
3797	4624	9.096823	TCATGTACTCCCTCCGTAAATAAATAT	57.903	33.333	0.00	0.00	0.00	1.28
3798	4625	8.481492	TCATGTACTCCCTCCGTAAATAAATA	57.519	34.615	0.00	0.00	0.00	1.40
3799	4626	7.369551	TCATGTACTCCCTCCGTAAATAAAT	57.630	36.000	0.00	0.00	0.00	1.40
3802	4629	7.891712	TGATATCATGTACTCCCTCCGTAAATA	59.108	37.037	0.00	0.00	0.00	1.40
3804	4631	6.072649	TGATATCATGTACTCCCTCCGTAAA	58.927	40.000	0.00	0.00	0.00	2.01
3805	4632	5.637127	TGATATCATGTACTCCCTCCGTAA	58.363	41.667	0.00	0.00	0.00	3.18
3806	4633	5.251182	TGATATCATGTACTCCCTCCGTA	57.749	43.478	0.00	0.00	0.00	4.02
3807	4634	4.114015	TGATATCATGTACTCCCTCCGT	57.886	45.455	0.00	0.00	0.00	4.69
3808	4635	5.003692	CATGATATCATGTACTCCCTCCG	57.996	47.826	29.90	7.10	46.40	4.63
3853	5358	1.398390	CCAGAAACTAGTGGCATTCGC	59.602	52.381	0.00	0.00	37.44	4.70
3855	5360	3.412386	ACACCAGAAACTAGTGGCATTC	58.588	45.455	0.00	0.00	37.34	2.67
3865	5370	7.736893	AGTCTGAATACTTAACACCAGAAACT	58.263	34.615	0.00	0.00	33.20	2.66
3867	5372	7.963532	AGAGTCTGAATACTTAACACCAGAAA	58.036	34.615	0.00	0.00	33.20	2.52
3887	6012	8.131731	TGCGCATATCATATCATAACTAGAGTC	58.868	37.037	5.66	0.00	0.00	3.36
3890	6015	8.084684	GGATGCGCATATCATATCATAACTAGA	58.915	37.037	25.40	0.00	0.00	2.43
3891	6016	7.869429	TGGATGCGCATATCATATCATAACTAG	59.131	37.037	25.40	0.00	0.00	2.57
3957	6095	5.465390	GCAATTTTTAGGTTGTTCTTCCACC	59.535	40.000	0.00	0.00	0.00	4.61
3993	7467	5.487488	AGGGTCAATGTATTCTCAGGTGTTA	59.513	40.000	0.00	0.00	0.00	2.41
3994	7468	4.289672	AGGGTCAATGTATTCTCAGGTGTT	59.710	41.667	0.00	0.00	0.00	3.32
4013	7498	8.655935	ATCATTTCTTTTGTCTTGATAAGGGT	57.344	30.769	0.00	0.00	0.00	4.34
4020	7505	8.950210	CCTAGCTTATCATTTCTTTTGTCTTGA	58.050	33.333	0.00	0.00	0.00	3.02
4035	7520	6.546034	GGCTATTTGGTTTTCCTAGCTTATCA	59.454	38.462	0.00	0.00	39.61	2.15
4038	7523	5.198207	GGGCTATTTGGTTTTCCTAGCTTA	58.802	41.667	0.00	0.00	39.61	3.09
4045	7530	4.344359	TTGTTGGGCTATTTGGTTTTCC	57.656	40.909	0.00	0.00	41.14	3.13
4046	7532	5.820423	AGTTTTGTTGGGCTATTTGGTTTTC	59.180	36.000	0.00	0.00	0.00	2.29
4074	7560	6.726490	TGTCATTAGGTCTATAGGTTGGTC	57.274	41.667	0.00	0.00	0.00	4.02
4237	7724	0.962489	CGAGGACCGGCTGAGATTAT	59.038	55.000	0.00	0.00	33.91	1.28
4256	7743	2.038557	TCTACCCAAAGAGTCCAAGCAC	59.961	50.000	0.00	0.00	0.00	4.40
4298	7785	7.505585	CCATGTACAACCCAACCAAGAATATAT	59.494	37.037	0.00	0.00	0.00	0.86
4392	7879	3.510459	TCTGGTCTTCTCCACTTCATCA	58.490	45.455	0.00	0.00	33.55	3.07
4894	8385	7.821846	GTGCAATATTGTTTCCCCTTTTCATTA	59.178	33.333	16.61	0.00	0.00	1.90
4896	8387	6.172630	GTGCAATATTGTTTCCCCTTTTCAT	58.827	36.000	16.61	0.00	0.00	2.57
4934	8426	6.039717	GCACATCCATTTGTACCAACATAGAT	59.960	38.462	0.00	0.00	34.97	1.98
5043	8540	8.593679	TGATCAGACTGTTTCAGGTTCTTTATA	58.406	33.333	1.59	0.00	35.51	0.98
5138	8700	3.990469	CACAGTCAGGTAGTGTCACAATC	59.010	47.826	5.62	0.00	39.88	2.67
5379	8941	5.565509	TGGAACCAGCATAATGACAGTAAA	58.434	37.500	0.00	0.00	0.00	2.01
5584	9146	0.379669	GATGCTCATTGGAACAGCCG	59.620	55.000	0.00	0.00	42.39	5.52
5594	9156	1.471119	CTTGCCACAGGATGCTCATT	58.529	50.000	0.00	0.00	42.53	2.57
5681	9243	1.064946	GGCGTCTGGAGACTCATCG	59.935	63.158	4.53	4.42	42.66	3.84
5744	9306	7.493645	AGGATAAACGAACTAAGGTAATTTCCG	59.506	37.037	0.00	0.00	0.00	4.30
5774	9336	1.808411	CTGTGAATACCGGCACAAGT	58.192	50.000	12.76	0.00	43.65	3.16
5970	9532	8.519526	AAGAAAGATCTACAGAGTTACAGTCTG	58.480	37.037	0.00	6.99	41.92	3.51
5990	9552	5.175673	GCATCTCCGGTTTTGAAAAAGAAAG	59.824	40.000	0.00	0.00	0.00	2.62
6013	9575	6.743110	TGAGATGTATAGTCTCACATTGAGC	58.257	40.000	11.79	0.00	45.19	4.26
6028	9590	9.425248	ACCACCATTTTTCATAATGAGATGTAT	57.575	29.630	0.00	0.00	37.65	2.29
6044	9606	3.005791	GCACTTCTTAGCACCACCATTTT	59.994	43.478	0.00	0.00	0.00	1.82
6053	9615	5.643777	TCCAGATAAAAGCACTTCTTAGCAC	59.356	40.000	0.00	0.00	33.88	4.40
6132	9696	2.166254	CCAAACAAACACTGGCAACTCT	59.834	45.455	0.00	0.00	37.61	3.24
6156	9724	8.470805	AGAAGTAATATCCAGTGTGTAGTTCTG	58.529	37.037	0.00	0.00	32.60	3.02
6176	9744	9.507329	AGCTCAAATTCACTCAAAATAGAAGTA	57.493	29.630	0.00	0.00	0.00	2.24
6177	9745	8.401490	AGCTCAAATTCACTCAAAATAGAAGT	57.599	30.769	0.00	0.00	0.00	3.01
6178	9746	9.688592	AAAGCTCAAATTCACTCAAAATAGAAG	57.311	29.630	0.00	0.00	0.00	2.85
6181	9749	9.565213	CCTAAAGCTCAAATTCACTCAAAATAG	57.435	33.333	0.00	0.00	0.00	1.73
6193	9761	6.079712	AGTGGTATCCCTAAAGCTCAAATT	57.920	37.500	0.00	0.00	0.00	1.82
6213	9781	4.336433	CCTAACCAAATGCAGTATGGAGTG	59.664	45.833	18.88	9.37	42.42	3.51
6294	9867	2.295885	GAAGCATGTGAGGCAGCTAAT	58.704	47.619	0.00	0.00	36.07	1.73
6298	9871	1.654954	CCTGAAGCATGTGAGGCAGC	61.655	60.000	0.00	0.00	0.00	5.25
6331	9904	1.651987	CGGTTGAGTATGCAATCCGT	58.348	50.000	0.00	0.00	37.51	4.69
6353	9926	2.609916	GAGAAAGATAGGCAACGGAAGC	59.390	50.000	0.00	0.00	46.39	3.86
6402	9975	2.942376	CGCAGTGGCTTAATTATCACCA	59.058	45.455	9.21	4.68	38.10	4.17
6634	10208	4.994852	GCATATATTTTGTAGTGCCGAGGA	59.005	41.667	0.00	0.00	0.00	3.71
6816	10524	1.578215	ATGAGCAAGGAGGGGCACAT	61.578	55.000	0.00	0.00	36.67	3.21
6840	10548	3.395941	AGGAGTGTGGGAAAAGATTCAGT	59.604	43.478	0.00	0.00	37.29	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.