Multiple sequence alignment - TraesCS4B01G231100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G231100 chr4B 100.000 2630 0 0 1 2630 482781200 482778571 0.000000e+00 4857.0
1 TraesCS4B01G231100 chr4B 81.600 125 22 1 209 332 213490017 213489893 4.630000e-18 102.0
2 TraesCS4B01G231100 chr4A 86.971 1819 162 39 357 2133 74578982 74577197 0.000000e+00 1977.0
3 TraesCS4B01G231100 chr4A 94.737 475 25 0 2156 2630 74577123 74576649 0.000000e+00 739.0
4 TraesCS4B01G231100 chr4D 86.201 1819 151 43 357 2128 393124659 393122894 0.000000e+00 1877.0
5 TraesCS4B01G231100 chr4D 96.211 475 18 0 2156 2630 393122815 393122341 0.000000e+00 778.0
6 TraesCS4B01G231100 chr4D 88.542 96 9 2 236 330 310858806 310858712 5.950000e-22 115.0
7 TraesCS4B01G231100 chr6A 82.222 135 21 3 190 322 158337442 158337309 2.140000e-21 113.0
8 TraesCS4B01G231100 chr6A 92.537 67 3 2 1 66 609431553 609431488 7.750000e-16 95.3
9 TraesCS4B01G231100 chr3D 74.503 302 45 16 45 330 239589665 239589380 4.630000e-18 102.0
10 TraesCS4B01G231100 chr3D 89.189 74 5 3 1 72 498229756 498229684 3.610000e-14 89.8
11 TraesCS4B01G231100 chr5B 96.667 60 0 2 1 59 24691348 24691290 5.990000e-17 99.0
12 TraesCS4B01G231100 chr3B 77.714 175 27 5 156 330 341212584 341212422 2.150000e-16 97.1
13 TraesCS4B01G231100 chr3B 87.500 80 6 3 1 78 242320631 242320554 3.610000e-14 89.8
14 TraesCS4B01G231100 chr3A 92.647 68 1 4 1 66 626688330 626688265 7.750000e-16 95.3
15 TraesCS4B01G231100 chr3A 92.537 67 3 1 1 65 687071087 687071153 7.750000e-16 95.3
16 TraesCS4B01G231100 chr3A 77.273 176 29 3 156 331 340270730 340270566 2.790000e-15 93.5
17 TraesCS4B01G231100 chr6D 90.278 72 3 4 1 72 448447237 448447304 1.000000e-14 91.6
18 TraesCS4B01G231100 chr7B 82.524 103 16 2 232 333 285178914 285178813 3.610000e-14 89.8
19 TraesCS4B01G231100 chr1A 88.312 77 6 3 1 75 542026305 542026380 3.610000e-14 89.8
20 TraesCS4B01G231100 chr5A 100.000 45 0 0 1 45 107548974 107549018 1.680000e-12 84.2
21 TraesCS4B01G231100 chr2B 85.897 78 11 0 253 330 334389267 334389344 1.680000e-12 84.2
22 TraesCS4B01G231100 chr6B 84.286 70 11 0 253 322 311383795 311383864 4.700000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G231100 chr4B 482778571 482781200 2629 True 4857.0 4857 100.000 1 2630 1 chr4B.!!$R2 2629
1 TraesCS4B01G231100 chr4A 74576649 74578982 2333 True 1358.0 1977 90.854 357 2630 2 chr4A.!!$R1 2273
2 TraesCS4B01G231100 chr4D 393122341 393124659 2318 True 1327.5 1877 91.206 357 2630 2 chr4D.!!$R2 2273

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
918 931 0.034089 GCTTACAACCAGGAGCCCAT 60.034 55.0 0.0 0.0 0.0 4.0 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 1861 1.068588 GTGTGCTACAGCCATATCGGA 59.931 52.381 0.0 0.0 41.18 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
43 44 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
44 45 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
45 46 4.349342 CCTCTAGGGCATATTTCCTTCAGT 59.651 45.833 0.00 0.00 34.75 3.41
46 47 5.512232 CCTCTAGGGCATATTTCCTTCAGTC 60.512 48.000 0.00 0.00 34.75 3.51
47 48 4.968719 TCTAGGGCATATTTCCTTCAGTCA 59.031 41.667 0.00 0.00 34.75 3.41
48 49 3.891049 AGGGCATATTTCCTTCAGTCAC 58.109 45.455 0.00 0.00 0.00 3.67
49 50 2.952310 GGGCATATTTCCTTCAGTCACC 59.048 50.000 0.00 0.00 0.00 4.02
50 51 3.372025 GGGCATATTTCCTTCAGTCACCT 60.372 47.826 0.00 0.00 0.00 4.00
51 52 3.629398 GGCATATTTCCTTCAGTCACCTG 59.371 47.826 0.00 0.00 40.25 4.00
52 53 3.065925 GCATATTTCCTTCAGTCACCTGC 59.934 47.826 0.00 0.00 38.66 4.85
53 54 2.206576 ATTTCCTTCAGTCACCTGCC 57.793 50.000 0.00 0.00 38.66 4.85
54 55 0.250295 TTTCCTTCAGTCACCTGCCG 60.250 55.000 0.00 0.00 38.66 5.69
55 56 2.731691 TTCCTTCAGTCACCTGCCGC 62.732 60.000 0.00 0.00 38.66 6.53
56 57 2.031012 CTTCAGTCACCTGCCGCA 59.969 61.111 0.00 0.00 38.66 5.69
57 58 2.031012 TTCAGTCACCTGCCGCAG 59.969 61.111 13.82 13.82 38.66 5.18
58 59 2.721971 CTTCAGTCACCTGCCGCAGT 62.722 60.000 18.98 4.76 38.66 4.40
59 60 2.994387 TTCAGTCACCTGCCGCAGTG 62.994 60.000 18.98 15.89 38.66 3.66
60 61 3.233980 AGTCACCTGCCGCAGTGA 61.234 61.111 18.98 17.68 0.00 3.41
61 62 3.044305 GTCACCTGCCGCAGTGAC 61.044 66.667 26.14 26.14 36.36 3.67
62 63 4.662961 TCACCTGCCGCAGTGACG 62.663 66.667 18.98 6.25 0.00 4.35
63 64 4.969196 CACCTGCCGCAGTGACGT 62.969 66.667 18.98 6.89 0.00 4.34
64 65 4.664677 ACCTGCCGCAGTGACGTC 62.665 66.667 18.98 9.11 0.00 4.34
65 66 4.662961 CCTGCCGCAGTGACGTCA 62.663 66.667 15.76 15.76 0.00 4.35
66 67 2.433145 CTGCCGCAGTGACGTCAT 60.433 61.111 23.12 8.09 0.00 3.06
67 68 2.432456 TGCCGCAGTGACGTCATC 60.432 61.111 23.12 15.04 0.00 2.92
68 69 3.188786 GCCGCAGTGACGTCATCC 61.189 66.667 23.12 9.96 0.00 3.51
69 70 2.261361 CCGCAGTGACGTCATCCA 59.739 61.111 23.12 0.00 0.00 3.41
70 71 2.094659 CCGCAGTGACGTCATCCAC 61.095 63.158 23.12 9.39 0.00 4.02
89 90 4.594854 TGGTGGGCACGCAACCAT 62.595 61.111 0.02 0.00 39.30 3.55
90 91 4.054825 GGTGGGCACGCAACCATG 62.055 66.667 0.02 0.00 39.30 3.66
91 92 3.294493 GTGGGCACGCAACCATGT 61.294 61.111 0.00 0.00 39.30 3.21
92 93 3.293714 TGGGCACGCAACCATGTG 61.294 61.111 0.00 0.00 42.84 3.21
93 94 2.983030 GGGCACGCAACCATGTGA 60.983 61.111 0.00 0.00 39.48 3.58
94 95 2.255252 GGCACGCAACCATGTGAC 59.745 61.111 0.00 0.00 39.48 3.67
95 96 2.255252 GCACGCAACCATGTGACC 59.745 61.111 0.00 0.00 39.48 4.02
96 97 2.260869 GCACGCAACCATGTGACCT 61.261 57.895 0.00 0.00 39.48 3.85
97 98 1.575922 CACGCAACCATGTGACCTG 59.424 57.895 0.00 0.00 39.48 4.00
98 99 2.260869 ACGCAACCATGTGACCTGC 61.261 57.895 0.00 0.00 39.48 4.85
99 100 2.562912 GCAACCATGTGACCTGCG 59.437 61.111 0.00 0.00 0.00 5.18
100 101 2.562912 CAACCATGTGACCTGCGC 59.437 61.111 0.00 0.00 0.00 6.09
101 102 2.672996 AACCATGTGACCTGCGCC 60.673 61.111 4.18 0.00 0.00 6.53
102 103 3.490031 AACCATGTGACCTGCGCCA 62.490 57.895 4.18 0.00 0.00 5.69
103 104 3.434319 CCATGTGACCTGCGCCAC 61.434 66.667 4.18 6.22 0.00 5.01
104 105 3.792047 CATGTGACCTGCGCCACG 61.792 66.667 4.18 0.00 36.15 4.94
127 128 3.003173 CCTTCGAGTGGGAGGGCA 61.003 66.667 0.00 0.00 0.00 5.36
128 129 2.266055 CTTCGAGTGGGAGGGCAC 59.734 66.667 0.00 0.00 0.00 5.01
146 147 4.268687 CTCGCGAGGATAATGGCC 57.731 61.111 28.40 0.00 0.00 5.36
147 148 1.734477 CTCGCGAGGATAATGGCCG 60.734 63.158 28.40 0.00 0.00 6.13
148 149 3.414700 CGCGAGGATAATGGCCGC 61.415 66.667 0.00 0.00 42.11 6.53
149 150 2.280797 GCGAGGATAATGGCCGCA 60.281 61.111 0.00 0.00 44.55 5.69
150 151 2.320587 GCGAGGATAATGGCCGCAG 61.321 63.158 0.00 0.00 44.55 5.18
151 152 1.367471 CGAGGATAATGGCCGCAGA 59.633 57.895 0.00 0.00 0.00 4.26
152 153 0.036952 CGAGGATAATGGCCGCAGAT 60.037 55.000 0.00 0.00 0.00 2.90
153 154 1.446907 GAGGATAATGGCCGCAGATG 58.553 55.000 0.00 0.00 0.00 2.90
154 155 0.037303 AGGATAATGGCCGCAGATGG 59.963 55.000 0.00 0.00 0.00 3.51
155 156 0.250901 GGATAATGGCCGCAGATGGT 60.251 55.000 0.00 0.00 0.00 3.55
156 157 0.877071 GATAATGGCCGCAGATGGTG 59.123 55.000 0.00 0.00 0.00 4.17
162 163 2.436646 CCGCAGATGGTGGTGGTC 60.437 66.667 0.00 0.00 42.49 4.02
163 164 2.436646 CGCAGATGGTGGTGGTCC 60.437 66.667 0.00 0.00 0.00 4.46
164 165 2.959484 CGCAGATGGTGGTGGTCCT 61.959 63.158 0.00 0.00 34.23 3.85
165 166 1.380302 GCAGATGGTGGTGGTCCTT 59.620 57.895 0.00 0.00 34.23 3.36
166 167 0.618458 GCAGATGGTGGTGGTCCTTA 59.382 55.000 0.00 0.00 34.23 2.69
167 168 1.407437 GCAGATGGTGGTGGTCCTTAG 60.407 57.143 0.00 0.00 34.23 2.18
168 169 1.909302 CAGATGGTGGTGGTCCTTAGT 59.091 52.381 0.00 0.00 34.23 2.24
169 170 1.909302 AGATGGTGGTGGTCCTTAGTG 59.091 52.381 0.00 0.00 34.23 2.74
170 171 1.906574 GATGGTGGTGGTCCTTAGTGA 59.093 52.381 0.00 0.00 34.23 3.41
171 172 1.809133 TGGTGGTGGTCCTTAGTGAA 58.191 50.000 0.00 0.00 34.23 3.18
172 173 1.697432 TGGTGGTGGTCCTTAGTGAAG 59.303 52.381 0.00 0.00 34.23 3.02
173 174 1.697982 GGTGGTGGTCCTTAGTGAAGT 59.302 52.381 0.00 0.00 34.23 3.01
174 175 2.289506 GGTGGTGGTCCTTAGTGAAGTC 60.290 54.545 0.00 0.00 34.23 3.01
175 176 1.975680 TGGTGGTCCTTAGTGAAGTCC 59.024 52.381 0.00 0.00 34.23 3.85
176 177 2.258109 GGTGGTCCTTAGTGAAGTCCT 58.742 52.381 0.00 0.00 0.00 3.85
177 178 2.234168 GGTGGTCCTTAGTGAAGTCCTC 59.766 54.545 0.00 0.00 0.00 3.71
178 179 2.234168 GTGGTCCTTAGTGAAGTCCTCC 59.766 54.545 0.00 0.00 0.00 4.30
179 180 2.111972 TGGTCCTTAGTGAAGTCCTCCT 59.888 50.000 0.00 0.00 0.00 3.69
180 181 2.761767 GGTCCTTAGTGAAGTCCTCCTC 59.238 54.545 0.00 0.00 0.00 3.71
181 182 2.761767 GTCCTTAGTGAAGTCCTCCTCC 59.238 54.545 0.00 0.00 0.00 4.30
182 183 1.751924 CCTTAGTGAAGTCCTCCTCCG 59.248 57.143 0.00 0.00 0.00 4.63
183 184 2.448453 CTTAGTGAAGTCCTCCTCCGT 58.552 52.381 0.00 0.00 0.00 4.69
184 185 2.125773 TAGTGAAGTCCTCCTCCGTC 57.874 55.000 0.00 0.00 0.00 4.79
185 186 0.112606 AGTGAAGTCCTCCTCCGTCA 59.887 55.000 0.00 0.00 0.00 4.35
186 187 0.966920 GTGAAGTCCTCCTCCGTCAA 59.033 55.000 0.00 0.00 0.00 3.18
187 188 1.067495 GTGAAGTCCTCCTCCGTCAAG 60.067 57.143 0.00 0.00 0.00 3.02
188 189 1.203013 TGAAGTCCTCCTCCGTCAAGA 60.203 52.381 0.00 0.00 0.00 3.02
189 190 1.474879 GAAGTCCTCCTCCGTCAAGAG 59.525 57.143 0.00 0.00 0.00 2.85
197 198 0.171455 CTCCGTCAAGAGGGTCTTCG 59.829 60.000 8.50 0.00 33.78 3.79
198 199 0.538977 TCCGTCAAGAGGGTCTTCGT 60.539 55.000 8.50 0.00 33.78 3.85
199 200 0.388649 CCGTCAAGAGGGTCTTCGTG 60.389 60.000 0.73 0.00 33.78 4.35
200 201 0.596577 CGTCAAGAGGGTCTTCGTGA 59.403 55.000 0.00 0.00 33.78 4.35
201 202 1.401670 CGTCAAGAGGGTCTTCGTGAG 60.402 57.143 0.00 0.00 36.49 3.51
202 203 1.067495 GTCAAGAGGGTCTTCGTGAGG 60.067 57.143 0.00 0.00 36.49 3.86
203 204 0.390472 CAAGAGGGTCTTCGTGAGGC 60.390 60.000 0.00 0.00 33.78 4.70
204 205 1.878656 AAGAGGGTCTTCGTGAGGCG 61.879 60.000 0.00 0.00 43.01 5.52
226 227 3.267860 CCTCGCGAGGCATCTTGC 61.268 66.667 39.83 0.00 44.91 4.01
253 254 2.281761 CCCACTGCTGAGCCGTTT 60.282 61.111 0.23 0.00 0.00 3.60
254 255 2.328099 CCCACTGCTGAGCCGTTTC 61.328 63.158 0.23 0.00 0.00 2.78
255 256 1.302033 CCACTGCTGAGCCGTTTCT 60.302 57.895 0.23 0.00 0.00 2.52
256 257 0.886490 CCACTGCTGAGCCGTTTCTT 60.886 55.000 0.23 0.00 0.00 2.52
257 258 0.236711 CACTGCTGAGCCGTTTCTTG 59.763 55.000 0.23 0.00 0.00 3.02
258 259 0.106708 ACTGCTGAGCCGTTTCTTGA 59.893 50.000 0.23 0.00 0.00 3.02
259 260 0.795085 CTGCTGAGCCGTTTCTTGAG 59.205 55.000 0.23 0.00 0.00 3.02
260 261 0.106708 TGCTGAGCCGTTTCTTGAGT 59.893 50.000 0.23 0.00 0.00 3.41
261 262 1.230324 GCTGAGCCGTTTCTTGAGTT 58.770 50.000 0.00 0.00 0.00 3.01
262 263 1.069636 GCTGAGCCGTTTCTTGAGTTG 60.070 52.381 0.00 0.00 0.00 3.16
263 264 1.532868 CTGAGCCGTTTCTTGAGTTGG 59.467 52.381 0.00 0.00 0.00 3.77
264 265 0.875059 GAGCCGTTTCTTGAGTTGGG 59.125 55.000 0.00 0.00 0.00 4.12
265 266 1.172812 AGCCGTTTCTTGAGTTGGGC 61.173 55.000 0.00 0.00 39.33 5.36
266 267 1.956802 CCGTTTCTTGAGTTGGGCC 59.043 57.895 0.00 0.00 0.00 5.80
267 268 0.821711 CCGTTTCTTGAGTTGGGCCA 60.822 55.000 0.00 0.00 0.00 5.36
268 269 0.593128 CGTTTCTTGAGTTGGGCCAG 59.407 55.000 6.23 0.00 0.00 4.85
269 270 0.961753 GTTTCTTGAGTTGGGCCAGG 59.038 55.000 6.23 0.00 0.00 4.45
270 271 0.178964 TTTCTTGAGTTGGGCCAGGG 60.179 55.000 6.23 0.00 0.00 4.45
271 272 2.036256 CTTGAGTTGGGCCAGGGG 59.964 66.667 6.23 0.00 0.00 4.79
272 273 2.780924 TTGAGTTGGGCCAGGGGT 60.781 61.111 6.23 0.00 0.00 4.95
273 274 2.371897 CTTGAGTTGGGCCAGGGGTT 62.372 60.000 6.23 0.00 0.00 4.11
274 275 2.283173 GAGTTGGGCCAGGGGTTG 60.283 66.667 6.23 0.00 0.00 3.77
275 276 4.621087 AGTTGGGCCAGGGGTTGC 62.621 66.667 6.23 0.00 0.00 4.17
276 277 4.621087 GTTGGGCCAGGGGTTGCT 62.621 66.667 6.23 0.00 0.00 3.91
277 278 3.843800 TTGGGCCAGGGGTTGCTT 61.844 61.111 6.23 0.00 0.00 3.91
278 279 3.826265 TTGGGCCAGGGGTTGCTTC 62.826 63.158 6.23 0.00 0.00 3.86
280 281 3.984732 GGCCAGGGGTTGCTTCCT 61.985 66.667 0.00 0.00 0.00 3.36
283 284 2.036256 CAGGGGTTGCTTCCTGGG 59.964 66.667 0.00 0.00 44.99 4.45
284 285 2.452491 AGGGGTTGCTTCCTGGGT 60.452 61.111 0.00 0.00 31.11 4.51
285 286 2.035783 GGGGTTGCTTCCTGGGTC 59.964 66.667 0.00 0.00 0.00 4.46
286 287 2.359975 GGGTTGCTTCCTGGGTCG 60.360 66.667 0.00 0.00 0.00 4.79
287 288 2.430367 GGTTGCTTCCTGGGTCGT 59.570 61.111 0.00 0.00 0.00 4.34
288 289 1.675219 GGTTGCTTCCTGGGTCGTA 59.325 57.895 0.00 0.00 0.00 3.43
289 290 0.391263 GGTTGCTTCCTGGGTCGTAG 60.391 60.000 0.00 0.00 0.00 3.51
290 291 0.391263 GTTGCTTCCTGGGTCGTAGG 60.391 60.000 0.00 0.00 36.63 3.18
291 292 2.180159 TTGCTTCCTGGGTCGTAGGC 62.180 60.000 0.00 0.00 35.23 3.93
292 293 2.656069 GCTTCCTGGGTCGTAGGCA 61.656 63.158 0.00 0.00 35.23 4.75
293 294 1.517832 CTTCCTGGGTCGTAGGCAG 59.482 63.158 0.00 0.00 35.23 4.85
294 295 0.970937 CTTCCTGGGTCGTAGGCAGA 60.971 60.000 0.00 0.00 31.24 4.26
295 296 0.325296 TTCCTGGGTCGTAGGCAGAT 60.325 55.000 0.00 0.00 35.23 2.90
296 297 1.043116 TCCTGGGTCGTAGGCAGATG 61.043 60.000 0.00 0.00 35.23 2.90
297 298 1.443407 CTGGGTCGTAGGCAGATGG 59.557 63.158 0.00 0.00 0.00 3.51
298 299 2.109181 GGGTCGTAGGCAGATGGC 59.891 66.667 0.00 0.00 43.74 4.40
307 308 2.513897 GCAGATGGCCCGTGGTAC 60.514 66.667 0.00 0.00 36.11 3.34
308 309 2.189521 CAGATGGCCCGTGGTACC 59.810 66.667 4.43 4.43 0.00 3.34
309 310 3.087906 AGATGGCCCGTGGTACCC 61.088 66.667 10.07 0.00 0.00 3.69
310 311 3.087906 GATGGCCCGTGGTACCCT 61.088 66.667 10.07 0.00 0.00 4.34
311 312 3.400599 GATGGCCCGTGGTACCCTG 62.401 68.421 10.07 0.95 0.00 4.45
314 315 3.643554 GCCCGTGGTACCCTGGTT 61.644 66.667 10.07 0.00 0.00 3.67
315 316 2.666812 CCCGTGGTACCCTGGTTC 59.333 66.667 10.07 0.00 0.00 3.62
316 317 2.666812 CCGTGGTACCCTGGTTCC 59.333 66.667 10.07 5.11 36.31 3.62
317 318 2.666812 CGTGGTACCCTGGTTCCC 59.333 66.667 10.07 4.05 35.12 3.97
318 319 2.218454 CGTGGTACCCTGGTTCCCA 61.218 63.158 10.07 6.45 35.12 4.37
319 320 1.377612 GTGGTACCCTGGTTCCCAC 59.622 63.158 10.07 17.10 39.73 4.61
320 321 1.131928 GTGGTACCCTGGTTCCCACT 61.132 60.000 21.57 0.00 41.55 4.00
321 322 1.131303 TGGTACCCTGGTTCCCACTG 61.131 60.000 10.07 0.00 35.12 3.66
322 323 0.838987 GGTACCCTGGTTCCCACTGA 60.839 60.000 0.00 0.00 30.61 3.41
323 324 1.061546 GTACCCTGGTTCCCACTGAA 58.938 55.000 0.00 0.00 0.00 3.02
330 331 3.390003 GTTCCCACTGAACCGACAA 57.610 52.632 0.00 0.00 46.35 3.18
331 332 1.892209 GTTCCCACTGAACCGACAAT 58.108 50.000 0.00 0.00 46.35 2.71
332 333 3.048337 GTTCCCACTGAACCGACAATA 57.952 47.619 0.00 0.00 46.35 1.90
333 334 3.000727 GTTCCCACTGAACCGACAATAG 58.999 50.000 0.00 0.00 46.35 1.73
334 335 1.553248 TCCCACTGAACCGACAATAGG 59.447 52.381 0.00 0.00 0.00 2.57
335 336 1.406887 CCCACTGAACCGACAATAGGG 60.407 57.143 0.00 0.00 0.00 3.53
336 337 1.406887 CCACTGAACCGACAATAGGGG 60.407 57.143 0.00 0.00 0.00 4.79
337 338 1.553248 CACTGAACCGACAATAGGGGA 59.447 52.381 0.00 0.00 0.00 4.81
338 339 1.831736 ACTGAACCGACAATAGGGGAG 59.168 52.381 0.00 0.00 0.00 4.30
339 340 2.108168 CTGAACCGACAATAGGGGAGA 58.892 52.381 0.00 0.00 0.00 3.71
340 341 2.101582 CTGAACCGACAATAGGGGAGAG 59.898 54.545 0.00 0.00 0.00 3.20
341 342 0.831307 AACCGACAATAGGGGAGAGC 59.169 55.000 0.00 0.00 0.00 4.09
342 343 0.325296 ACCGACAATAGGGGAGAGCA 60.325 55.000 0.00 0.00 0.00 4.26
343 344 0.830648 CCGACAATAGGGGAGAGCAA 59.169 55.000 0.00 0.00 0.00 3.91
344 345 1.473434 CCGACAATAGGGGAGAGCAAC 60.473 57.143 0.00 0.00 0.00 4.17
345 346 1.207089 CGACAATAGGGGAGAGCAACA 59.793 52.381 0.00 0.00 0.00 3.33
346 347 2.633488 GACAATAGGGGAGAGCAACAC 58.367 52.381 0.00 0.00 0.00 3.32
347 348 2.237392 GACAATAGGGGAGAGCAACACT 59.763 50.000 0.00 0.00 0.00 3.55
348 349 2.026822 ACAATAGGGGAGAGCAACACTG 60.027 50.000 0.00 0.00 0.00 3.66
349 350 1.958288 ATAGGGGAGAGCAACACTGT 58.042 50.000 0.00 0.00 0.00 3.55
350 351 1.267121 TAGGGGAGAGCAACACTGTC 58.733 55.000 0.00 0.00 37.96 3.51
351 352 0.472734 AGGGGAGAGCAACACTGTCT 60.473 55.000 0.00 0.00 38.72 3.41
352 353 0.398318 GGGGAGAGCAACACTGTCTT 59.602 55.000 0.00 0.00 38.72 3.01
353 354 1.609320 GGGGAGAGCAACACTGTCTTC 60.609 57.143 0.00 0.00 38.72 2.87
354 355 1.346068 GGGAGAGCAACACTGTCTTCT 59.654 52.381 0.00 0.00 38.72 2.85
355 356 2.224402 GGGAGAGCAACACTGTCTTCTT 60.224 50.000 0.00 0.00 38.72 2.52
363 364 1.963338 ACTGTCTTCTTGCAGCGGC 60.963 57.895 0.31 0.31 41.68 6.53
380 381 1.810031 CGGCATGCGAGGGAGATTTTA 60.810 52.381 12.44 0.00 0.00 1.52
381 382 2.508526 GGCATGCGAGGGAGATTTTAT 58.491 47.619 12.44 0.00 0.00 1.40
395 396 2.027003 TTTTATTGCGGGGTAGACGG 57.973 50.000 0.00 0.00 0.00 4.79
421 422 2.445085 TCCGGTGAGGTGTGGTGT 60.445 61.111 0.00 0.00 41.99 4.16
427 428 0.180406 GTGAGGTGTGGTGTGAGGTT 59.820 55.000 0.00 0.00 0.00 3.50
433 434 0.986019 TGTGGTGTGAGGTTGGGAGT 60.986 55.000 0.00 0.00 0.00 3.85
456 457 0.719015 AGGAGGTGGAAGATGGGAGA 59.281 55.000 0.00 0.00 0.00 3.71
458 459 2.131023 GGAGGTGGAAGATGGGAGATT 58.869 52.381 0.00 0.00 0.00 2.40
459 460 2.158696 GGAGGTGGAAGATGGGAGATTG 60.159 54.545 0.00 0.00 0.00 2.67
462 463 0.181114 TGGAAGATGGGAGATTGGCG 59.819 55.000 0.00 0.00 0.00 5.69
492 493 5.006649 CGCGTGAATGGATAAGAATGAGAAA 59.993 40.000 0.00 0.00 0.00 2.52
500 502 9.705103 AATGGATAAGAATGAGAAAAATGAGGA 57.295 29.630 0.00 0.00 0.00 3.71
512 518 3.556038 ATGAGGACGGTGGGTGGGA 62.556 63.158 0.00 0.00 0.00 4.37
557 563 0.389817 CGTCCAATCTCGCTTGGTCA 60.390 55.000 9.95 0.00 44.99 4.02
596 602 1.135199 TGGTGCGAGATTAGAACGGTC 60.135 52.381 0.00 0.00 0.00 4.79
597 603 1.189403 GTGCGAGATTAGAACGGTCG 58.811 55.000 0.00 0.00 0.00 4.79
631 637 2.619646 TGTTTCCCTTCTAACAAACGGC 59.380 45.455 0.00 0.00 32.41 5.68
634 640 2.500229 TCCCTTCTAACAAACGGCAAG 58.500 47.619 0.00 0.00 0.00 4.01
649 655 8.472413 ACAAACGGCAAGTCTTAACTCTATATA 58.528 33.333 0.00 0.00 33.48 0.86
650 656 9.477484 CAAACGGCAAGTCTTAACTCTATATAT 57.523 33.333 0.00 0.00 33.48 0.86
653 659 8.305317 ACGGCAAGTCTTAACTCTATATATTCC 58.695 37.037 0.00 0.00 33.48 3.01
691 699 6.765989 ACCATATATTGTATGTGTCAAGCGTT 59.234 34.615 0.54 0.00 0.00 4.84
710 723 9.937577 CAAGCGTTAAAATAAAATAACTTCAGC 57.062 29.630 0.00 0.00 31.37 4.26
721 734 4.773323 ATAACTTCAGCTGCCAGTTTTC 57.227 40.909 26.68 0.00 32.88 2.29
724 737 2.961062 ACTTCAGCTGCCAGTTTTCAAT 59.039 40.909 9.47 0.00 0.00 2.57
726 739 4.217118 ACTTCAGCTGCCAGTTTTCAATAG 59.783 41.667 9.47 0.00 0.00 1.73
736 749 8.537049 TGCCAGTTTTCAATAGATCAAAATTG 57.463 30.769 0.00 2.45 34.96 2.32
745 758 7.028962 TCAATAGATCAAAATTGAACGGCAAG 58.971 34.615 12.91 0.00 41.13 4.01
749 762 3.911868 TCAAAATTGAACGGCAAGGATG 58.088 40.909 0.00 0.00 40.42 3.51
757 770 5.029807 TGAACGGCAAGGATGATACATTA 57.970 39.130 0.00 0.00 0.00 1.90
796 809 7.569639 TTTTTACTTTTGGGGTTTTAATGGC 57.430 32.000 0.00 0.00 0.00 4.40
797 810 3.780804 ACTTTTGGGGTTTTAATGGCC 57.219 42.857 0.00 0.00 0.00 5.36
798 811 2.373836 ACTTTTGGGGTTTTAATGGCCC 59.626 45.455 0.00 0.00 41.62 5.80
806 819 4.020573 GGGGTTTTAATGGCCCTATAATGC 60.021 45.833 0.00 0.00 42.01 3.56
822 835 7.141363 CCTATAATGCATTTCCTTGCTTGTAC 58.859 38.462 18.75 0.00 43.18 2.90
833 846 6.554334 TCCTTGCTTGTACAAGTGTAAATC 57.446 37.500 30.90 16.25 44.55 2.17
877 890 1.812571 CGTTCATAGCAACTTGCCCTT 59.187 47.619 10.25 0.00 46.52 3.95
891 904 5.010282 ACTTGCCCTTTGTATGAAGGTTAG 58.990 41.667 3.26 0.83 43.84 2.34
897 910 6.238648 CCCTTTGTATGAAGGTTAGACACTT 58.761 40.000 3.26 0.00 43.84 3.16
913 926 3.214328 ACACTTTGCTTACAACCAGGAG 58.786 45.455 0.00 0.00 34.87 3.69
914 927 2.030805 CACTTTGCTTACAACCAGGAGC 60.031 50.000 0.00 0.00 34.87 4.70
915 928 1.541588 CTTTGCTTACAACCAGGAGCC 59.458 52.381 0.00 0.00 34.87 4.70
916 929 0.251165 TTGCTTACAACCAGGAGCCC 60.251 55.000 0.00 0.00 34.30 5.19
917 930 1.378762 GCTTACAACCAGGAGCCCA 59.621 57.895 0.00 0.00 0.00 5.36
918 931 0.034089 GCTTACAACCAGGAGCCCAT 60.034 55.000 0.00 0.00 0.00 4.00
919 932 1.755179 CTTACAACCAGGAGCCCATG 58.245 55.000 0.00 0.00 0.00 3.66
920 933 1.281867 CTTACAACCAGGAGCCCATGA 59.718 52.381 0.00 0.00 0.00 3.07
924 937 2.301346 CAACCAGGAGCCCATGATTAC 58.699 52.381 0.00 0.00 0.00 1.89
933 946 7.419057 CCAGGAGCCCATGATTACGTTATATAT 60.419 40.741 0.00 0.00 0.00 0.86
935 948 8.639761 AGGAGCCCATGATTACGTTATATATAC 58.360 37.037 0.00 0.00 0.00 1.47
937 950 9.464714 GAGCCCATGATTACGTTATATATACAG 57.535 37.037 0.00 0.00 0.00 2.74
938 951 9.197306 AGCCCATGATTACGTTATATATACAGA 57.803 33.333 0.00 0.00 0.00 3.41
939 952 9.464714 GCCCATGATTACGTTATATATACAGAG 57.535 37.037 0.00 0.00 0.00 3.35
960 973 9.606631 ACAGAGAACTATTGAACTATTTCCATC 57.393 33.333 0.00 0.00 0.00 3.51
991 1010 2.020720 ACACGCCAACATTCTCAAACA 58.979 42.857 0.00 0.00 0.00 2.83
992 1011 2.622942 ACACGCCAACATTCTCAAACAT 59.377 40.909 0.00 0.00 0.00 2.71
993 1012 3.068024 ACACGCCAACATTCTCAAACATT 59.932 39.130 0.00 0.00 0.00 2.71
994 1013 3.670055 CACGCCAACATTCTCAAACATTC 59.330 43.478 0.00 0.00 0.00 2.67
995 1014 3.569701 ACGCCAACATTCTCAAACATTCT 59.430 39.130 0.00 0.00 0.00 2.40
996 1015 4.161333 CGCCAACATTCTCAAACATTCTC 58.839 43.478 0.00 0.00 0.00 2.87
997 1016 4.320421 CGCCAACATTCTCAAACATTCTCA 60.320 41.667 0.00 0.00 0.00 3.27
998 1017 5.531634 GCCAACATTCTCAAACATTCTCAA 58.468 37.500 0.00 0.00 0.00 3.02
999 1018 5.984926 GCCAACATTCTCAAACATTCTCAAA 59.015 36.000 0.00 0.00 0.00 2.69
1027 1046 0.179189 GGTTTTCGCAGCTTCCATCG 60.179 55.000 0.00 0.00 0.00 3.84
1033 1052 1.742900 CGCAGCTTCCATCGTGTACG 61.743 60.000 0.00 0.00 41.45 3.67
1037 1056 2.478894 CAGCTTCCATCGTGTACGTTTT 59.521 45.455 0.00 0.00 40.80 2.43
1044 1063 3.491356 CATCGTGTACGTTTTCCTCGTA 58.509 45.455 0.00 0.00 41.72 3.43
1045 1064 3.829886 TCGTGTACGTTTTCCTCGTAT 57.170 42.857 0.00 0.00 43.73 3.06
1065 1084 1.531423 TCCACGTCGTTCTCTTAGCT 58.469 50.000 0.00 0.00 0.00 3.32
1107 1126 3.239253 ACGCCCTTCCCAACGTCT 61.239 61.111 0.00 0.00 32.37 4.18
1166 1185 4.712425 AAACGGCGTCGAGTCCCG 62.712 66.667 20.03 14.59 46.97 5.14
1207 1226 1.300481 CAGCTCGGATCAGTACTCGA 58.700 55.000 0.00 0.00 0.00 4.04
1339 1358 3.954981 ACCCCCAGCTGTACCCCT 61.955 66.667 13.81 0.00 0.00 4.79
1425 1444 3.131223 ACTGCTACGTCATGAAGCTGTAT 59.869 43.478 21.84 5.67 43.73 2.29
1437 1456 0.760567 AGCTGTATCCGGATGGCAGA 60.761 55.000 35.06 15.36 34.14 4.26
1473 1492 3.426568 GTCAGCTGCAAGGCGGTC 61.427 66.667 9.47 0.00 37.24 4.79
1488 1507 4.452733 GTCGCGGGCTGCTACCTT 62.453 66.667 17.54 0.00 43.27 3.50
1498 1517 0.886043 CTGCTACCTTGTGTGCAGCA 60.886 55.000 0.00 0.00 40.03 4.41
1510 1529 4.527157 GCAGCAATGGAGACGCGC 62.527 66.667 5.73 0.00 0.00 6.86
1596 1615 2.746277 GAATTCCAGCGGTGCGGT 60.746 61.111 9.63 0.00 38.40 5.68
1646 1680 3.056107 GTCTAGCCACGGCCATATGATTA 60.056 47.826 2.24 0.00 43.17 1.75
1647 1681 2.949177 AGCCACGGCCATATGATTAA 57.051 45.000 2.24 0.00 43.17 1.40
1648 1682 3.439857 AGCCACGGCCATATGATTAAT 57.560 42.857 2.24 0.00 43.17 1.40
1649 1683 3.766545 AGCCACGGCCATATGATTAATT 58.233 40.909 2.24 0.00 43.17 1.40
1656 1690 5.048991 ACGGCCATATGATTAATTCGGTTTC 60.049 40.000 2.24 0.00 0.00 2.78
1688 1722 6.509656 TCTATCGGCTTAAGCGAGATTTAAA 58.490 36.000 29.41 17.35 43.26 1.52
1690 1724 3.619929 TCGGCTTAAGCGAGATTTAAACC 59.380 43.478 20.80 1.92 43.26 3.27
1692 1726 4.094442 CGGCTTAAGCGAGATTTAAACCTT 59.906 41.667 20.80 0.00 43.26 3.50
1693 1727 5.391629 CGGCTTAAGCGAGATTTAAACCTTT 60.392 40.000 20.80 0.00 43.26 3.11
1703 1737 7.519970 GCGAGATTTAAACCTTTCAGTTTCTCA 60.520 37.037 8.19 0.00 40.38 3.27
1719 1753 1.613925 TCTCACGGGACAGACAAGAAG 59.386 52.381 0.00 0.00 0.00 2.85
1741 1775 8.164058 GAAGAATTCTTCCATCCCAATCTTAG 57.836 38.462 30.16 0.00 44.93 2.18
1787 1821 0.592754 CGATCGCCTCTCCTCGTTTC 60.593 60.000 0.26 0.00 0.00 2.78
1812 1846 1.197721 CAGAAAGCAACTCGGCGATTT 59.802 47.619 11.27 8.70 39.27 2.17
1818 1861 2.124122 GCAACTCGGCGATTTGTTTTT 58.876 42.857 31.39 7.79 0.00 1.94
1820 1863 2.699251 ACTCGGCGATTTGTTTTTCC 57.301 45.000 11.27 0.00 0.00 3.13
1832 1875 6.457663 CGATTTGTTTTTCCGATATGGCTGTA 60.458 38.462 0.00 0.00 37.80 2.74
1850 1893 4.318831 GCTGTAGCACACACTGTTTAAGTC 60.319 45.833 0.00 0.00 37.84 3.01
1895 1946 2.754552 GCTAAGGTGACCATGCATGAAA 59.245 45.455 28.31 9.90 0.00 2.69
1928 1979 3.904136 ACTGCTTGGAATTTTCTCACG 57.096 42.857 0.00 0.00 0.00 4.35
1929 1980 3.476552 ACTGCTTGGAATTTTCTCACGA 58.523 40.909 0.00 0.00 0.00 4.35
1942 1993 0.673956 CTCACGAGTCTCCTGGTCGA 60.674 60.000 10.88 0.00 37.16 4.20
1958 2009 2.294791 GGTCGATCGATTCAGATCCACT 59.705 50.000 22.50 0.00 42.94 4.00
1959 2010 3.243569 GGTCGATCGATTCAGATCCACTT 60.244 47.826 22.50 0.00 42.94 3.16
1994 2045 1.173913 ATTTCGCCAAGCTGTAACCC 58.826 50.000 0.00 0.00 0.00 4.11
1995 2046 1.231958 TTTCGCCAAGCTGTAACCCG 61.232 55.000 0.00 0.00 0.00 5.28
2008 2059 2.548904 TGTAACCCGAACACCATTTTCG 59.451 45.455 0.00 0.00 44.40 3.46
2017 2068 1.732259 ACACCATTTTCGCGAGATGAC 59.268 47.619 26.45 0.00 41.60 3.06
2026 2077 4.895224 TTCGCGAGATGACAGTACTTAT 57.105 40.909 9.59 0.00 41.60 1.73
2027 2078 4.469625 TCGCGAGATGACAGTACTTATC 57.530 45.455 3.71 0.00 33.31 1.75
2028 2079 3.250280 TCGCGAGATGACAGTACTTATCC 59.750 47.826 3.71 0.00 33.31 2.59
2030 2081 4.497507 CGCGAGATGACAGTACTTATCCAA 60.498 45.833 0.00 0.00 0.00 3.53
2031 2082 5.348986 GCGAGATGACAGTACTTATCCAAA 58.651 41.667 0.00 0.00 0.00 3.28
2032 2083 5.810587 GCGAGATGACAGTACTTATCCAAAA 59.189 40.000 0.00 0.00 0.00 2.44
2034 2085 7.011482 GCGAGATGACAGTACTTATCCAAAAAT 59.989 37.037 0.00 0.00 0.00 1.82
2035 2086 8.331022 CGAGATGACAGTACTTATCCAAAAATG 58.669 37.037 0.00 0.00 0.00 2.32
2036 2087 7.989826 AGATGACAGTACTTATCCAAAAATGC 58.010 34.615 0.00 0.00 0.00 3.56
2063 2116 1.135139 TCATCTGCTGTCTCTTACCGC 59.865 52.381 0.00 0.00 38.68 5.68
2098 2151 3.132863 CAAATTCTTGGGCTGCTGC 57.867 52.632 7.10 7.10 38.76 5.25
2113 2168 2.877168 CTGCTGCACACTTTTTCTCTCT 59.123 45.455 0.00 0.00 0.00 3.10
2129 2184 5.291905 TCTCTCTTTTTCTTCTTTCCCGT 57.708 39.130 0.00 0.00 0.00 5.28
2133 2188 4.070009 TCTTTTTCTTCTTTCCCGTAGCC 58.930 43.478 0.00 0.00 0.00 3.93
2134 2189 2.088950 TTTCTTCTTTCCCGTAGCCG 57.911 50.000 0.00 0.00 0.00 5.52
2135 2190 0.971386 TTCTTCTTTCCCGTAGCCGT 59.029 50.000 0.00 0.00 0.00 5.68
2138 2193 3.554934 TCTTCTTTCCCGTAGCCGTATA 58.445 45.455 0.00 0.00 0.00 1.47
2140 2195 5.316167 TCTTCTTTCCCGTAGCCGTATATA 58.684 41.667 0.00 0.00 0.00 0.86
2141 2196 5.182001 TCTTCTTTCCCGTAGCCGTATATAC 59.818 44.000 2.53 2.53 0.00 1.47
2142 2197 4.397420 TCTTTCCCGTAGCCGTATATACA 58.603 43.478 13.22 0.00 0.00 2.29
2143 2198 4.216257 TCTTTCCCGTAGCCGTATATACAC 59.784 45.833 13.22 4.45 0.00 2.90
2145 2200 2.813754 TCCCGTAGCCGTATATACACAC 59.186 50.000 13.22 1.72 0.00 3.82
2146 2201 2.553602 CCCGTAGCCGTATATACACACA 59.446 50.000 13.22 0.00 0.00 3.72
2147 2202 3.558505 CCGTAGCCGTATATACACACAC 58.441 50.000 13.22 4.59 0.00 3.82
2148 2203 3.558505 CGTAGCCGTATATACACACACC 58.441 50.000 13.22 0.00 0.00 4.16
2150 2205 4.497842 CGTAGCCGTATATACACACACCAA 60.498 45.833 13.22 0.00 0.00 3.67
2151 2206 4.475051 AGCCGTATATACACACACCAAA 57.525 40.909 13.22 0.00 0.00 3.28
2152 2207 4.439057 AGCCGTATATACACACACCAAAG 58.561 43.478 13.22 0.00 0.00 2.77
2153 2208 3.001939 GCCGTATATACACACACCAAAGC 59.998 47.826 13.22 0.00 0.00 3.51
2154 2209 3.244345 CCGTATATACACACACCAAAGCG 59.756 47.826 13.22 0.00 0.00 4.68
2178 2284 1.134699 GCTCGATCACATCACTCCCAA 60.135 52.381 0.00 0.00 0.00 4.12
2205 2311 2.945984 CAACGCACGCACCATCTT 59.054 55.556 0.00 0.00 0.00 2.40
2440 2546 4.394712 GGGACTGGTGCCACCTCG 62.395 72.222 16.23 8.74 41.16 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.349342 ACTGAAGGAAATATGCCCTAGAGG 59.651 45.833 0.00 0.00 39.47 3.69
23 24 5.070981 TGACTGAAGGAAATATGCCCTAGAG 59.929 44.000 0.00 0.46 31.36 2.43
24 25 4.968719 TGACTGAAGGAAATATGCCCTAGA 59.031 41.667 0.00 0.00 31.36 2.43
25 26 5.059833 GTGACTGAAGGAAATATGCCCTAG 58.940 45.833 0.00 0.00 31.36 3.02
26 27 4.141482 GGTGACTGAAGGAAATATGCCCTA 60.141 45.833 0.00 0.00 31.36 3.53
27 28 3.372025 GGTGACTGAAGGAAATATGCCCT 60.372 47.826 0.00 0.00 0.00 5.19
28 29 2.952310 GGTGACTGAAGGAAATATGCCC 59.048 50.000 0.00 0.00 0.00 5.36
29 30 3.891049 AGGTGACTGAAGGAAATATGCC 58.109 45.455 0.00 0.00 41.13 4.40
43 44 3.233980 TCACTGCGGCAGGTGACT 61.234 61.111 31.38 9.54 46.44 3.41
44 45 3.044305 GTCACTGCGGCAGGTGAC 61.044 66.667 30.75 30.75 36.36 3.67
45 46 4.662961 CGTCACTGCGGCAGGTGA 62.663 66.667 31.38 26.31 35.51 4.02
46 47 4.969196 ACGTCACTGCGGCAGGTG 62.969 66.667 31.38 24.76 35.51 4.00
47 48 4.664677 GACGTCACTGCGGCAGGT 62.665 66.667 31.38 20.16 40.13 4.00
48 49 4.662961 TGACGTCACTGCGGCAGG 62.663 66.667 31.38 20.58 45.85 4.85
51 52 3.188786 GGATGACGTCACTGCGGC 61.189 66.667 22.71 6.14 40.92 6.53
52 53 2.094659 GTGGATGACGTCACTGCGG 61.095 63.158 22.71 0.00 35.98 5.69
53 54 2.436539 CGTGGATGACGTCACTGCG 61.437 63.158 22.71 18.18 43.50 5.18
54 55 3.463505 CGTGGATGACGTCACTGC 58.536 61.111 22.71 15.37 43.50 4.40
72 73 4.594854 ATGGTTGCGTGCCCACCA 62.595 61.111 13.58 13.58 32.49 4.17
73 74 4.054825 CATGGTTGCGTGCCCACC 62.055 66.667 3.86 3.86 32.49 4.61
74 75 3.294493 ACATGGTTGCGTGCCCAC 61.294 61.111 0.00 0.00 32.49 4.61
75 76 3.293714 CACATGGTTGCGTGCCCA 61.294 61.111 0.00 0.00 34.66 5.36
76 77 2.983030 TCACATGGTTGCGTGCCC 60.983 61.111 0.00 0.00 33.03 5.36
77 78 2.255252 GTCACATGGTTGCGTGCC 59.745 61.111 0.00 0.00 33.03 5.01
78 79 2.255252 GGTCACATGGTTGCGTGC 59.745 61.111 0.00 0.00 33.03 5.34
79 80 1.575922 CAGGTCACATGGTTGCGTG 59.424 57.895 0.00 0.00 34.34 5.34
80 81 2.260869 GCAGGTCACATGGTTGCGT 61.261 57.895 0.00 0.00 0.00 5.24
81 82 2.562912 GCAGGTCACATGGTTGCG 59.437 61.111 0.00 0.00 0.00 4.85
82 83 2.562912 CGCAGGTCACATGGTTGC 59.437 61.111 0.00 0.00 0.00 4.17
83 84 2.562912 GCGCAGGTCACATGGTTG 59.437 61.111 0.30 0.00 0.00 3.77
84 85 2.672996 GGCGCAGGTCACATGGTT 60.673 61.111 10.83 0.00 0.00 3.67
85 86 3.952508 TGGCGCAGGTCACATGGT 61.953 61.111 10.83 0.00 0.00 3.55
106 107 3.787001 CTCCCACTCGAAGGGCCC 61.787 72.222 16.46 16.46 46.36 5.80
107 108 3.787001 CCTCCCACTCGAAGGGCC 61.787 72.222 16.05 0.00 46.36 5.80
108 109 3.787001 CCCTCCCACTCGAAGGGC 61.787 72.222 16.05 0.00 46.36 5.19
110 111 3.003173 TGCCCTCCCACTCGAAGG 61.003 66.667 0.00 0.00 0.00 3.46
111 112 2.266055 GTGCCCTCCCACTCGAAG 59.734 66.667 0.00 0.00 33.02 3.79
112 113 3.319198 GGTGCCCTCCCACTCGAA 61.319 66.667 0.00 0.00 36.03 3.71
113 114 4.316823 AGGTGCCCTCCCACTCGA 62.317 66.667 0.00 0.00 36.03 4.04
114 115 3.775654 GAGGTGCCCTCCCACTCG 61.776 72.222 9.46 0.00 44.36 4.18
129 130 1.734477 CGGCCATTATCCTCGCGAG 60.734 63.158 29.06 29.06 0.00 5.03
130 131 2.338620 CGGCCATTATCCTCGCGA 59.661 61.111 9.26 9.26 0.00 5.87
131 132 3.414700 GCGGCCATTATCCTCGCG 61.415 66.667 2.24 0.00 37.12 5.87
132 133 2.280797 TGCGGCCATTATCCTCGC 60.281 61.111 2.24 0.00 45.60 5.03
133 134 0.036952 ATCTGCGGCCATTATCCTCG 60.037 55.000 2.24 0.00 0.00 4.63
134 135 1.446907 CATCTGCGGCCATTATCCTC 58.553 55.000 2.24 0.00 0.00 3.71
135 136 0.037303 CCATCTGCGGCCATTATCCT 59.963 55.000 2.24 0.00 0.00 3.24
136 137 0.250901 ACCATCTGCGGCCATTATCC 60.251 55.000 2.24 0.00 0.00 2.59
137 138 0.877071 CACCATCTGCGGCCATTATC 59.123 55.000 2.24 0.00 0.00 1.75
138 139 0.538057 CCACCATCTGCGGCCATTAT 60.538 55.000 2.24 0.00 0.00 1.28
139 140 1.152984 CCACCATCTGCGGCCATTA 60.153 57.895 2.24 0.00 0.00 1.90
140 141 2.440796 CCACCATCTGCGGCCATT 60.441 61.111 2.24 0.00 0.00 3.16
141 142 3.731728 ACCACCATCTGCGGCCAT 61.732 61.111 2.24 0.00 0.00 4.40
142 143 4.720902 CACCACCATCTGCGGCCA 62.721 66.667 2.24 0.00 0.00 5.36
144 145 4.722700 ACCACCACCATCTGCGGC 62.723 66.667 0.00 0.00 0.00 6.53
145 146 2.436646 GACCACCACCATCTGCGG 60.437 66.667 0.00 0.00 0.00 5.69
146 147 2.436646 GGACCACCACCATCTGCG 60.437 66.667 0.00 0.00 35.97 5.18
147 148 0.618458 TAAGGACCACCACCATCTGC 59.382 55.000 0.00 0.00 38.94 4.26
148 149 1.909302 ACTAAGGACCACCACCATCTG 59.091 52.381 0.00 0.00 38.94 2.90
149 150 1.909302 CACTAAGGACCACCACCATCT 59.091 52.381 0.00 0.00 38.94 2.90
150 151 1.906574 TCACTAAGGACCACCACCATC 59.093 52.381 0.00 0.00 38.94 3.51
151 152 2.038863 TCACTAAGGACCACCACCAT 57.961 50.000 0.00 0.00 38.94 3.55
152 153 1.697432 CTTCACTAAGGACCACCACCA 59.303 52.381 0.00 0.00 38.94 4.17
153 154 1.697982 ACTTCACTAAGGACCACCACC 59.302 52.381 0.00 0.00 37.01 4.61
154 155 2.289506 GGACTTCACTAAGGACCACCAC 60.290 54.545 0.00 0.00 37.01 4.16
155 156 1.975680 GGACTTCACTAAGGACCACCA 59.024 52.381 0.00 0.00 37.01 4.17
156 157 2.234168 GAGGACTTCACTAAGGACCACC 59.766 54.545 0.00 0.00 37.01 4.61
157 158 2.234168 GGAGGACTTCACTAAGGACCAC 59.766 54.545 0.00 0.00 37.01 4.16
158 159 2.111972 AGGAGGACTTCACTAAGGACCA 59.888 50.000 0.00 0.00 37.01 4.02
159 160 2.761767 GAGGAGGACTTCACTAAGGACC 59.238 54.545 0.00 0.00 37.01 4.46
160 161 2.761767 GGAGGAGGACTTCACTAAGGAC 59.238 54.545 0.00 0.00 37.01 3.85
161 162 2.620886 CGGAGGAGGACTTCACTAAGGA 60.621 54.545 0.00 0.00 37.01 3.36
162 163 1.751924 CGGAGGAGGACTTCACTAAGG 59.248 57.143 0.00 0.00 37.01 2.69
163 164 2.424246 GACGGAGGAGGACTTCACTAAG 59.576 54.545 0.00 0.00 38.77 2.18
164 165 2.224942 TGACGGAGGAGGACTTCACTAA 60.225 50.000 0.00 0.00 0.00 2.24
165 166 1.353358 TGACGGAGGAGGACTTCACTA 59.647 52.381 0.00 0.00 0.00 2.74
166 167 0.112606 TGACGGAGGAGGACTTCACT 59.887 55.000 0.00 0.00 0.00 3.41
167 168 0.966920 TTGACGGAGGAGGACTTCAC 59.033 55.000 0.00 0.00 0.00 3.18
168 169 1.203013 TCTTGACGGAGGAGGACTTCA 60.203 52.381 0.00 0.00 0.00 3.02
169 170 1.474879 CTCTTGACGGAGGAGGACTTC 59.525 57.143 0.00 0.00 0.00 3.01
170 171 1.551452 CTCTTGACGGAGGAGGACTT 58.449 55.000 0.00 0.00 0.00 3.01
171 172 3.274601 CTCTTGACGGAGGAGGACT 57.725 57.895 0.00 0.00 0.00 3.85
178 179 0.171455 CGAAGACCCTCTTGACGGAG 59.829 60.000 0.00 0.00 36.73 4.63
179 180 0.538977 ACGAAGACCCTCTTGACGGA 60.539 55.000 0.00 0.00 36.73 4.69
180 181 0.388649 CACGAAGACCCTCTTGACGG 60.389 60.000 0.00 0.00 36.73 4.79
181 182 0.596577 TCACGAAGACCCTCTTGACG 59.403 55.000 0.00 0.00 36.73 4.35
182 183 1.067495 CCTCACGAAGACCCTCTTGAC 60.067 57.143 0.00 0.00 36.73 3.18
183 184 1.257743 CCTCACGAAGACCCTCTTGA 58.742 55.000 0.00 0.00 36.73 3.02
184 185 0.390472 GCCTCACGAAGACCCTCTTG 60.390 60.000 0.00 0.00 36.73 3.02
185 186 1.976112 GCCTCACGAAGACCCTCTT 59.024 57.895 0.00 0.00 39.87 2.85
186 187 3.701454 GCCTCACGAAGACCCTCT 58.299 61.111 0.00 0.00 0.00 3.69
236 237 2.281761 AAACGGCTCAGCAGTGGG 60.282 61.111 2.13 0.00 37.01 4.61
237 238 0.886490 AAGAAACGGCTCAGCAGTGG 60.886 55.000 2.13 0.00 37.01 4.00
238 239 0.236711 CAAGAAACGGCTCAGCAGTG 59.763 55.000 2.13 0.00 37.01 3.66
239 240 0.106708 TCAAGAAACGGCTCAGCAGT 59.893 50.000 0.00 0.00 38.82 4.40
240 241 0.795085 CTCAAGAAACGGCTCAGCAG 59.205 55.000 0.00 0.00 0.00 4.24
241 242 0.106708 ACTCAAGAAACGGCTCAGCA 59.893 50.000 0.00 0.00 0.00 4.41
242 243 1.069636 CAACTCAAGAAACGGCTCAGC 60.070 52.381 0.00 0.00 0.00 4.26
243 244 1.532868 CCAACTCAAGAAACGGCTCAG 59.467 52.381 0.00 0.00 0.00 3.35
244 245 1.593196 CCAACTCAAGAAACGGCTCA 58.407 50.000 0.00 0.00 0.00 4.26
245 246 0.875059 CCCAACTCAAGAAACGGCTC 59.125 55.000 0.00 0.00 0.00 4.70
246 247 1.172812 GCCCAACTCAAGAAACGGCT 61.173 55.000 0.00 0.00 32.09 5.52
247 248 1.285950 GCCCAACTCAAGAAACGGC 59.714 57.895 0.00 0.00 0.00 5.68
248 249 0.821711 TGGCCCAACTCAAGAAACGG 60.822 55.000 0.00 0.00 0.00 4.44
249 250 0.593128 CTGGCCCAACTCAAGAAACG 59.407 55.000 0.00 0.00 0.00 3.60
250 251 0.961753 CCTGGCCCAACTCAAGAAAC 59.038 55.000 0.00 0.00 0.00 2.78
251 252 0.178964 CCCTGGCCCAACTCAAGAAA 60.179 55.000 0.00 0.00 0.00 2.52
252 253 1.460255 CCCTGGCCCAACTCAAGAA 59.540 57.895 0.00 0.00 0.00 2.52
253 254 2.538141 CCCCTGGCCCAACTCAAGA 61.538 63.158 0.00 0.00 0.00 3.02
254 255 2.036256 CCCCTGGCCCAACTCAAG 59.964 66.667 0.00 0.00 0.00 3.02
255 256 2.399607 AACCCCTGGCCCAACTCAA 61.400 57.895 0.00 0.00 0.00 3.02
256 257 2.780924 AACCCCTGGCCCAACTCA 60.781 61.111 0.00 0.00 0.00 3.41
257 258 2.283173 CAACCCCTGGCCCAACTC 60.283 66.667 0.00 0.00 0.00 3.01
258 259 4.621087 GCAACCCCTGGCCCAACT 62.621 66.667 0.00 0.00 0.00 3.16
259 260 4.621087 AGCAACCCCTGGCCCAAC 62.621 66.667 0.00 0.00 0.00 3.77
260 261 3.826265 GAAGCAACCCCTGGCCCAA 62.826 63.158 0.00 0.00 0.00 4.12
261 262 4.299796 GAAGCAACCCCTGGCCCA 62.300 66.667 0.00 0.00 0.00 5.36
263 264 3.984732 AGGAAGCAACCCCTGGCC 61.985 66.667 0.00 0.00 0.00 5.36
264 265 2.677875 CAGGAAGCAACCCCTGGC 60.678 66.667 0.00 0.00 44.68 4.85
267 268 2.452491 ACCCAGGAAGCAACCCCT 60.452 61.111 0.00 0.00 0.00 4.79
268 269 2.035783 GACCCAGGAAGCAACCCC 59.964 66.667 0.00 0.00 0.00 4.95
269 270 1.833787 TACGACCCAGGAAGCAACCC 61.834 60.000 0.00 0.00 0.00 4.11
270 271 0.391263 CTACGACCCAGGAAGCAACC 60.391 60.000 0.00 0.00 0.00 3.77
271 272 0.391263 CCTACGACCCAGGAAGCAAC 60.391 60.000 0.00 0.00 34.91 4.17
272 273 1.980052 CCTACGACCCAGGAAGCAA 59.020 57.895 0.00 0.00 34.91 3.91
273 274 2.656069 GCCTACGACCCAGGAAGCA 61.656 63.158 0.00 0.00 34.91 3.91
274 275 2.187163 GCCTACGACCCAGGAAGC 59.813 66.667 0.00 0.00 34.91 3.86
275 276 0.970937 TCTGCCTACGACCCAGGAAG 60.971 60.000 0.00 0.00 39.93 3.46
276 277 0.325296 ATCTGCCTACGACCCAGGAA 60.325 55.000 0.00 0.00 34.91 3.36
277 278 1.043116 CATCTGCCTACGACCCAGGA 61.043 60.000 0.00 0.00 34.91 3.86
278 279 1.443407 CATCTGCCTACGACCCAGG 59.557 63.158 0.00 0.00 36.16 4.45
279 280 1.443407 CCATCTGCCTACGACCCAG 59.557 63.158 0.00 0.00 0.00 4.45
280 281 2.731571 GCCATCTGCCTACGACCCA 61.732 63.158 0.00 0.00 0.00 4.51
281 282 2.109181 GCCATCTGCCTACGACCC 59.891 66.667 0.00 0.00 0.00 4.46
290 291 2.513897 GTACCACGGGCCATCTGC 60.514 66.667 4.39 0.00 40.16 4.26
291 292 2.189521 GGTACCACGGGCCATCTG 59.810 66.667 7.15 0.00 0.00 2.90
313 314 2.027561 CCTATTGTCGGTTCAGTGGGAA 60.028 50.000 0.00 0.00 29.78 3.97
314 315 1.553248 CCTATTGTCGGTTCAGTGGGA 59.447 52.381 0.00 0.00 29.78 4.37
315 316 1.406887 CCCTATTGTCGGTTCAGTGGG 60.407 57.143 0.00 0.00 0.00 4.61
316 317 1.406887 CCCCTATTGTCGGTTCAGTGG 60.407 57.143 0.00 0.00 0.00 4.00
317 318 1.553248 TCCCCTATTGTCGGTTCAGTG 59.447 52.381 0.00 0.00 0.00 3.66
318 319 1.831736 CTCCCCTATTGTCGGTTCAGT 59.168 52.381 0.00 0.00 0.00 3.41
319 320 2.101582 CTCTCCCCTATTGTCGGTTCAG 59.898 54.545 0.00 0.00 0.00 3.02
320 321 2.108168 CTCTCCCCTATTGTCGGTTCA 58.892 52.381 0.00 0.00 0.00 3.18
321 322 1.202545 GCTCTCCCCTATTGTCGGTTC 60.203 57.143 0.00 0.00 0.00 3.62
322 323 0.831307 GCTCTCCCCTATTGTCGGTT 59.169 55.000 0.00 0.00 0.00 4.44
323 324 0.325296 TGCTCTCCCCTATTGTCGGT 60.325 55.000 0.00 0.00 0.00 4.69
324 325 0.830648 TTGCTCTCCCCTATTGTCGG 59.169 55.000 0.00 0.00 0.00 4.79
325 326 1.207089 TGTTGCTCTCCCCTATTGTCG 59.793 52.381 0.00 0.00 0.00 4.35
326 327 2.237392 AGTGTTGCTCTCCCCTATTGTC 59.763 50.000 0.00 0.00 0.00 3.18
327 328 2.026822 CAGTGTTGCTCTCCCCTATTGT 60.027 50.000 0.00 0.00 0.00 2.71
328 329 2.026822 ACAGTGTTGCTCTCCCCTATTG 60.027 50.000 0.00 0.00 0.00 1.90
329 330 2.237392 GACAGTGTTGCTCTCCCCTATT 59.763 50.000 0.00 0.00 0.00 1.73
330 331 1.834263 GACAGTGTTGCTCTCCCCTAT 59.166 52.381 0.00 0.00 0.00 2.57
331 332 1.203187 AGACAGTGTTGCTCTCCCCTA 60.203 52.381 0.00 0.00 0.00 3.53
332 333 0.472734 AGACAGTGTTGCTCTCCCCT 60.473 55.000 0.00 0.00 0.00 4.79
333 334 0.398318 AAGACAGTGTTGCTCTCCCC 59.602 55.000 0.00 0.00 0.00 4.81
334 335 1.346068 AGAAGACAGTGTTGCTCTCCC 59.654 52.381 0.00 0.00 0.00 4.30
335 336 2.805099 CAAGAAGACAGTGTTGCTCTCC 59.195 50.000 0.00 0.00 0.00 3.71
336 337 2.222911 GCAAGAAGACAGTGTTGCTCTC 59.777 50.000 9.19 0.00 41.69 3.20
337 338 2.216898 GCAAGAAGACAGTGTTGCTCT 58.783 47.619 9.19 3.80 41.69 4.09
338 339 1.942657 TGCAAGAAGACAGTGTTGCTC 59.057 47.619 15.79 5.51 44.56 4.26
339 340 1.945394 CTGCAAGAAGACAGTGTTGCT 59.055 47.619 15.79 3.60 44.56 3.91
340 341 1.598924 GCTGCAAGAAGACAGTGTTGC 60.599 52.381 9.47 9.47 44.53 4.17
341 342 1.333524 CGCTGCAAGAAGACAGTGTTG 60.334 52.381 0.00 0.00 39.12 3.33
342 343 0.940126 CGCTGCAAGAAGACAGTGTT 59.060 50.000 0.00 0.00 39.12 3.32
343 344 0.882042 CCGCTGCAAGAAGACAGTGT 60.882 55.000 0.00 0.00 41.71 3.55
344 345 1.864862 CCGCTGCAAGAAGACAGTG 59.135 57.895 0.00 0.00 42.67 3.66
345 346 1.963338 GCCGCTGCAAGAAGACAGT 60.963 57.895 0.00 0.00 36.26 3.55
346 347 1.962822 TGCCGCTGCAAGAAGACAG 60.963 57.895 0.00 0.00 46.66 3.51
347 348 2.110835 TGCCGCTGCAAGAAGACA 59.889 55.556 0.00 0.00 46.66 3.41
363 364 3.607775 CGCAATAAAATCTCCCTCGCATG 60.608 47.826 0.00 0.00 0.00 4.06
364 365 2.549754 CGCAATAAAATCTCCCTCGCAT 59.450 45.455 0.00 0.00 0.00 4.73
380 381 1.078708 CAACCGTCTACCCCGCAAT 60.079 57.895 0.00 0.00 0.00 3.56
381 382 2.344500 CAACCGTCTACCCCGCAA 59.656 61.111 0.00 0.00 0.00 4.85
395 396 1.450312 CCTCACCGGAGATGGCAAC 60.450 63.158 9.46 0.00 44.26 4.17
421 422 1.538876 CCTCCCACTCCCAACCTCA 60.539 63.158 0.00 0.00 0.00 3.86
427 428 2.122729 CACCTCCTCCCACTCCCA 59.877 66.667 0.00 0.00 0.00 4.37
433 434 0.621571 CCATCTTCCACCTCCTCCCA 60.622 60.000 0.00 0.00 0.00 4.37
492 493 1.378762 CCACCCACCGTCCTCATTT 59.621 57.895 0.00 0.00 0.00 2.32
500 502 4.567597 TGTCCTCCCACCCACCGT 62.568 66.667 0.00 0.00 0.00 4.83
512 518 2.578163 ATAGCATGCACGCGTGTCCT 62.578 55.000 36.80 27.29 36.85 3.85
569 575 1.600511 TAATCTCGCACCAGTCGCCA 61.601 55.000 0.00 0.00 0.00 5.69
571 577 0.100682 TCTAATCTCGCACCAGTCGC 59.899 55.000 0.00 0.00 0.00 5.19
579 585 0.099968 CCGACCGTTCTAATCTCGCA 59.900 55.000 0.00 0.00 0.00 5.10
596 602 1.414378 GAAACATTTTGGAACGGCCG 58.586 50.000 26.86 26.86 40.66 6.13
597 603 1.606994 GGGAAACATTTTGGAACGGCC 60.607 52.381 0.00 0.00 37.10 6.13
607 613 5.737922 GCCGTTTGTTAGAAGGGAAACATTT 60.738 40.000 0.00 0.00 36.84 2.32
679 687 9.953697 AGTTATTTTATTTTAACGCTTGACACA 57.046 25.926 0.00 0.00 34.30 3.72
691 699 8.802267 ACTGGCAGCTGAAGTTATTTTATTTTA 58.198 29.630 20.43 0.00 0.00 1.52
709 722 4.970662 TGATCTATTGAAAACTGGCAGC 57.029 40.909 15.89 0.00 0.00 5.25
710 723 8.653338 CAATTTTGATCTATTGAAAACTGGCAG 58.347 33.333 14.16 14.16 34.44 4.85
721 734 6.254157 CCTTGCCGTTCAATTTTGATCTATTG 59.746 38.462 0.00 2.22 37.00 1.90
724 737 5.007034 TCCTTGCCGTTCAATTTTGATCTA 58.993 37.500 0.00 0.00 37.00 1.98
726 739 4.173036 TCCTTGCCGTTCAATTTTGATC 57.827 40.909 0.00 0.00 37.00 2.92
736 749 6.560253 AATAATGTATCATCCTTGCCGTTC 57.440 37.500 0.00 0.00 0.00 3.95
772 785 6.546403 GGCCATTAAAACCCCAAAAGTAAAAA 59.454 34.615 0.00 0.00 0.00 1.94
822 835 9.372369 GGGCTAGCTAATATAGATTTACACTTG 57.628 37.037 15.72 0.00 0.00 3.16
833 846 7.148052 ACGATTGTACAGGGCTAGCTAATATAG 60.148 40.741 15.72 0.83 0.00 1.31
853 866 3.429085 GGCAAGTTGCTATGAACGATTG 58.571 45.455 26.16 0.00 44.28 2.67
877 890 6.296026 AGCAAAGTGTCTAACCTTCATACAA 58.704 36.000 0.00 0.00 0.00 2.41
891 904 3.211045 TCCTGGTTGTAAGCAAAGTGTC 58.789 45.455 0.00 0.00 36.22 3.67
897 910 0.251165 GGGCTCCTGGTTGTAAGCAA 60.251 55.000 6.65 0.00 36.47 3.91
913 926 9.464714 CTCTGTATATATAACGTAATCATGGGC 57.535 37.037 0.00 0.00 0.00 5.36
935 948 9.605275 TGATGGAAATAGTTCAATAGTTCTCTG 57.395 33.333 5.15 0.00 35.25 3.35
940 953 9.566432 GGAGATGATGGAAATAGTTCAATAGTT 57.434 33.333 5.15 0.00 35.25 2.24
941 954 8.717717 TGGAGATGATGGAAATAGTTCAATAGT 58.282 33.333 5.15 0.00 35.25 2.12
942 955 9.736414 ATGGAGATGATGGAAATAGTTCAATAG 57.264 33.333 5.15 0.00 35.25 1.73
945 958 9.919416 TTAATGGAGATGATGGAAATAGTTCAA 57.081 29.630 5.15 0.00 35.25 2.69
946 959 9.342308 GTTAATGGAGATGATGGAAATAGTTCA 57.658 33.333 5.15 0.00 35.25 3.18
948 961 9.125026 GTGTTAATGGAGATGATGGAAATAGTT 57.875 33.333 0.00 0.00 0.00 2.24
953 966 4.335315 GCGTGTTAATGGAGATGATGGAAA 59.665 41.667 0.00 0.00 0.00 3.13
954 967 3.876914 GCGTGTTAATGGAGATGATGGAA 59.123 43.478 0.00 0.00 0.00 3.53
956 969 2.549754 GGCGTGTTAATGGAGATGATGG 59.450 50.000 0.00 0.00 0.00 3.51
960 973 2.746904 TGTTGGCGTGTTAATGGAGATG 59.253 45.455 0.00 0.00 0.00 2.90
994 1013 5.221880 TGCGAAAACCATTCTCATTTTGAG 58.778 37.500 0.00 0.00 45.59 3.02
995 1014 5.193663 TGCGAAAACCATTCTCATTTTGA 57.806 34.783 0.00 0.00 0.00 2.69
996 1015 4.143263 GCTGCGAAAACCATTCTCATTTTG 60.143 41.667 0.00 0.00 0.00 2.44
997 1016 3.989817 GCTGCGAAAACCATTCTCATTTT 59.010 39.130 0.00 0.00 0.00 1.82
998 1017 3.256631 AGCTGCGAAAACCATTCTCATTT 59.743 39.130 0.00 0.00 0.00 2.32
999 1018 2.821969 AGCTGCGAAAACCATTCTCATT 59.178 40.909 0.00 0.00 0.00 2.57
1012 1031 0.245266 TACACGATGGAAGCTGCGAA 59.755 50.000 0.00 0.00 0.00 4.70
1027 1046 4.090498 GTGGAATACGAGGAAAACGTACAC 59.910 45.833 0.00 0.00 46.21 2.90
1044 1063 2.492484 AGCTAAGAGAACGACGTGGAAT 59.508 45.455 3.97 0.00 0.00 3.01
1045 1064 1.884579 AGCTAAGAGAACGACGTGGAA 59.115 47.619 3.97 0.00 0.00 3.53
1082 1101 2.983592 GGAAGGGCGTGGTGGTTG 60.984 66.667 0.00 0.00 0.00 3.77
1083 1102 4.280019 GGGAAGGGCGTGGTGGTT 62.280 66.667 0.00 0.00 0.00 3.67
1126 1145 2.904866 GTTGCTGTTGGCCACCGA 60.905 61.111 3.88 0.00 40.92 4.69
1349 1368 0.802607 CGTGCTCTTCCTACCTTCGC 60.803 60.000 0.00 0.00 0.00 4.70
1393 1412 2.488820 GTAGCAGTCGTCGGGGTC 59.511 66.667 0.00 0.00 0.00 4.46
1396 1415 2.099831 GACGTAGCAGTCGTCGGG 59.900 66.667 11.20 0.00 45.64 5.14
1425 1444 2.366837 ACCCATCTGCCATCCGGA 60.367 61.111 6.61 6.61 0.00 5.14
1437 1456 1.153249 CGCCACGGTTATGACCCAT 60.153 57.895 0.22 0.00 43.42 4.00
1488 1507 1.229975 CGTCTCCATTGCTGCACACA 61.230 55.000 0.00 0.00 0.00 3.72
1498 1517 4.760047 AAGCGGCGCGTCTCCATT 62.760 61.111 27.59 10.58 0.00 3.16
1570 1589 3.264897 CTGGAATTCGGAGGCGCG 61.265 66.667 0.00 0.00 0.00 6.86
1646 1680 5.006358 CGATAGAAACCATCGAAACCGAATT 59.994 40.000 0.00 0.00 46.39 2.17
1647 1681 4.506654 CGATAGAAACCATCGAAACCGAAT 59.493 41.667 0.00 0.00 46.39 3.34
1648 1682 3.861113 CGATAGAAACCATCGAAACCGAA 59.139 43.478 0.00 0.00 46.39 4.30
1649 1683 3.441163 CGATAGAAACCATCGAAACCGA 58.559 45.455 0.00 0.00 46.39 4.69
1656 1690 3.184581 GCTTAAGCCGATAGAAACCATCG 59.815 47.826 17.00 0.00 43.80 3.84
1688 1722 1.766496 TCCCGTGAGAAACTGAAAGGT 59.234 47.619 0.00 0.00 39.30 3.50
1690 1724 2.802816 CTGTCCCGTGAGAAACTGAAAG 59.197 50.000 0.00 0.00 42.29 2.62
1692 1726 2.036387 TCTGTCCCGTGAGAAACTGAA 58.964 47.619 0.00 0.00 0.00 3.02
1693 1727 1.340248 GTCTGTCCCGTGAGAAACTGA 59.660 52.381 0.00 0.00 0.00 3.41
1703 1737 3.325135 AGAATTCTTCTTGTCTGTCCCGT 59.675 43.478 0.88 0.00 36.36 5.28
1719 1753 7.888250 AACTAAGATTGGGATGGAAGAATTC 57.112 36.000 0.00 0.00 46.67 2.17
1732 1766 6.986817 ACGGACTCATGATTAACTAAGATTGG 59.013 38.462 0.00 0.00 0.00 3.16
1735 1769 6.098409 ACCACGGACTCATGATTAACTAAGAT 59.902 38.462 0.00 0.00 0.00 2.40
1737 1771 5.661458 ACCACGGACTCATGATTAACTAAG 58.339 41.667 0.00 0.00 0.00 2.18
1738 1772 5.670792 ACCACGGACTCATGATTAACTAA 57.329 39.130 0.00 0.00 0.00 2.24
1741 1775 4.454504 ACAAACCACGGACTCATGATTAAC 59.545 41.667 0.00 0.00 0.00 2.01
1787 1821 1.205064 CGAGTTGCTTTCTGCCACG 59.795 57.895 0.00 0.00 41.58 4.94
1812 1846 3.625764 GCTACAGCCATATCGGAAAAACA 59.374 43.478 0.00 0.00 36.56 2.83
1818 1861 1.068588 GTGTGCTACAGCCATATCGGA 59.931 52.381 0.00 0.00 41.18 4.55
1820 1863 1.860950 GTGTGTGCTACAGCCATATCG 59.139 52.381 0.00 0.00 40.69 2.92
1832 1875 3.275617 TGGACTTAAACAGTGTGTGCT 57.724 42.857 0.00 0.00 35.01 4.40
1895 1946 2.124860 GCAGTAAACCGGCCCGAT 60.125 61.111 3.71 0.00 0.00 4.18
1928 1979 1.600023 ATCGATCGACCAGGAGACTC 58.400 55.000 22.06 0.00 40.21 3.36
1929 1980 1.950909 GAATCGATCGACCAGGAGACT 59.049 52.381 22.06 0.00 46.44 3.24
1942 1993 4.836825 ACAACAAGTGGATCTGAATCGAT 58.163 39.130 0.00 0.00 32.24 3.59
1958 2009 4.804108 CGAAATTGGCTGGAATACAACAA 58.196 39.130 0.00 0.00 32.70 2.83
1959 2010 3.366883 GCGAAATTGGCTGGAATACAACA 60.367 43.478 0.00 0.00 0.00 3.33
1995 2046 2.415168 TCATCTCGCGAAAATGGTGTTC 59.585 45.455 23.39 0.00 0.00 3.18
2008 2059 4.569761 TGGATAAGTACTGTCATCTCGC 57.430 45.455 0.00 0.00 0.00 5.03
2031 2082 7.122353 AGAGACAGCAGATGATTAAAAGCATTT 59.878 33.333 0.00 0.00 42.41 2.32
2032 2083 6.602406 AGAGACAGCAGATGATTAAAAGCATT 59.398 34.615 0.00 0.00 34.76 3.56
2034 2085 5.494724 AGAGACAGCAGATGATTAAAAGCA 58.505 37.500 0.00 0.00 0.00 3.91
2035 2086 6.434018 AAGAGACAGCAGATGATTAAAAGC 57.566 37.500 0.00 0.00 0.00 3.51
2036 2087 7.254252 CGGTAAGAGACAGCAGATGATTAAAAG 60.254 40.741 0.00 0.00 0.00 2.27
2063 2116 1.579964 TTGGCTGCATGTGCTTCTCG 61.580 55.000 6.55 0.00 42.66 4.04
2098 2151 9.631452 AAAGAAGAAAAAGAGAGAAAAAGTGTG 57.369 29.630 0.00 0.00 0.00 3.82
2113 2168 2.809696 CGGCTACGGGAAAGAAGAAAAA 59.190 45.455 0.00 0.00 36.18 1.94
2129 2184 5.593968 CTTTGGTGTGTGTATATACGGCTA 58.406 41.667 8.33 0.00 0.00 3.93
2133 2188 3.302221 GCGCTTTGGTGTGTGTATATACG 60.302 47.826 0.00 0.00 0.00 3.06
2134 2189 3.001939 GGCGCTTTGGTGTGTGTATATAC 59.998 47.826 7.64 5.89 0.00 1.47
2135 2190 3.199677 GGCGCTTTGGTGTGTGTATATA 58.800 45.455 7.64 0.00 0.00 0.86
2138 2193 1.573829 CGGCGCTTTGGTGTGTGTAT 61.574 55.000 7.64 0.00 0.00 2.29
2140 2195 3.582120 CGGCGCTTTGGTGTGTGT 61.582 61.111 7.64 0.00 0.00 3.72
2141 2196 4.326766 CCGGCGCTTTGGTGTGTG 62.327 66.667 7.64 0.00 0.00 3.82
2153 2208 3.032609 GATGTGATCGAGCCGGCG 61.033 66.667 23.20 8.11 0.00 6.46
2154 2209 2.106938 TGATGTGATCGAGCCGGC 59.893 61.111 21.89 21.89 0.00 6.13
2205 2311 1.372997 GTGCAAGACCGAGAGCGAA 60.373 57.895 0.00 0.00 40.82 4.70
2320 2426 4.406173 CGCCACAGACGAGTCGCT 62.406 66.667 13.59 8.07 34.09 4.93
2331 2437 3.690280 TCGATGGACTGCGCCACA 61.690 61.111 4.18 0.00 41.56 4.17
2440 2546 2.126189 GTCGGGGTCGTAGCACAC 60.126 66.667 0.00 0.00 37.69 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.