Multiple sequence alignment - TraesCS4B01G229900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G229900 chr4B 100.000 6157 0 0 1 6157 480917675 480923831 0.000000e+00 11370.0
1 TraesCS4B01G229900 chr4B 85.303 694 74 15 1 674 110284442 110285127 0.000000e+00 691.0
2 TraesCS4B01G229900 chr4A 95.833 2616 88 13 889 3489 72918019 72920628 0.000000e+00 4207.0
3 TraesCS4B01G229900 chr4A 93.953 1968 71 21 4207 6157 72921361 72923297 0.000000e+00 2931.0
4 TraesCS4B01G229900 chr4A 95.209 647 28 3 3486 4129 72920720 72921366 0.000000e+00 1020.0
5 TraesCS4B01G229900 chr4A 90.219 685 52 7 1 673 139873825 139874506 0.000000e+00 880.0
6 TraesCS4B01G229900 chr4A 93.103 87 6 0 813 899 72917823 72917909 1.800000e-25 128.0
7 TraesCS4B01G229900 chr4D 94.369 2593 126 12 1551 4129 391033161 391035747 0.000000e+00 3962.0
8 TraesCS4B01G229900 chr4D 93.626 1961 82 13 4207 6155 391035742 391037671 0.000000e+00 2889.0
9 TraesCS4B01G229900 chr4D 91.608 858 40 10 1 850 391031631 391032464 0.000000e+00 1157.0
10 TraesCS4B01G229900 chr4D 95.501 689 24 3 839 1527 391032486 391033167 0.000000e+00 1094.0
11 TraesCS4B01G229900 chr2D 91.924 681 48 5 1 674 645161591 645162271 0.000000e+00 946.0
12 TraesCS4B01G229900 chr2D 86.272 692 67 21 1 674 19564168 19564849 0.000000e+00 726.0
13 TraesCS4B01G229900 chr2A 91.095 685 44 10 1 677 165547373 165546698 0.000000e+00 911.0
14 TraesCS4B01G229900 chr2A 94.444 198 10 1 698 895 720461663 720461859 2.790000e-78 303.0
15 TraesCS4B01G229900 chr2A 85.271 129 12 7 4125 4250 202107632 202107508 6.480000e-25 126.0
16 TraesCS4B01G229900 chr1A 88.757 676 56 15 1 667 463189825 463190489 0.000000e+00 809.0
17 TraesCS4B01G229900 chr3D 86.522 690 66 19 3 675 589709445 589708766 0.000000e+00 734.0
18 TraesCS4B01G229900 chr1D 86.003 643 68 17 1 626 368281905 368282542 0.000000e+00 669.0
19 TraesCS4B01G229900 chr1D 91.304 138 12 0 754 891 423302181 423302044 8.150000e-44 189.0
20 TraesCS4B01G229900 chr5D 94.706 170 9 0 726 895 302348540 302348709 1.320000e-66 265.0
21 TraesCS4B01G229900 chr5D 94.624 93 5 0 4125 4217 446918170 446918262 1.790000e-30 145.0
22 TraesCS4B01G229900 chr7B 90.050 201 16 3 699 895 161221448 161221248 2.200000e-64 257.0
23 TraesCS4B01G229900 chr7B 94.681 94 5 0 4118 4211 223176087 223175994 4.970000e-31 147.0
24 TraesCS4B01G229900 chr7B 94.737 95 4 1 4118 4212 639796192 639796285 4.970000e-31 147.0
25 TraesCS4B01G229900 chr6D 91.018 167 13 1 732 896 16115457 16115623 2.230000e-54 224.0
26 TraesCS4B01G229900 chr1B 91.549 142 12 0 754 895 572683554 572683413 4.870000e-46 196.0
27 TraesCS4B01G229900 chr5B 97.701 87 2 0 4126 4212 440023747 440023833 3.840000e-32 150.0
28 TraesCS4B01G229900 chr5B 95.652 92 4 0 4120 4211 411034868 411034777 1.380000e-31 148.0
29 TraesCS4B01G229900 chr6B 93.878 98 6 0 4115 4212 551951859 551951956 1.380000e-31 148.0
30 TraesCS4B01G229900 chr6B 100.000 28 0 0 2679 2706 349893171 349893144 1.100000e-02 52.8
31 TraesCS4B01G229900 chr7D 94.681 94 5 0 4118 4211 246813324 246813231 4.970000e-31 147.0
32 TraesCS4B01G229900 chr3A 89.815 108 6 4 4102 4209 217822159 217822261 3.870000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G229900 chr4B 480917675 480923831 6156 False 11370.0 11370 100.0000 1 6157 1 chr4B.!!$F2 6156
1 TraesCS4B01G229900 chr4B 110284442 110285127 685 False 691.0 691 85.3030 1 674 1 chr4B.!!$F1 673
2 TraesCS4B01G229900 chr4A 72917823 72923297 5474 False 2071.5 4207 94.5245 813 6157 4 chr4A.!!$F2 5344
3 TraesCS4B01G229900 chr4A 139873825 139874506 681 False 880.0 880 90.2190 1 673 1 chr4A.!!$F1 672
4 TraesCS4B01G229900 chr4D 391031631 391037671 6040 False 2275.5 3962 93.7760 1 6155 4 chr4D.!!$F1 6154
5 TraesCS4B01G229900 chr2D 645161591 645162271 680 False 946.0 946 91.9240 1 674 1 chr2D.!!$F2 673
6 TraesCS4B01G229900 chr2D 19564168 19564849 681 False 726.0 726 86.2720 1 674 1 chr2D.!!$F1 673
7 TraesCS4B01G229900 chr2A 165546698 165547373 675 True 911.0 911 91.0950 1 677 1 chr2A.!!$R1 676
8 TraesCS4B01G229900 chr1A 463189825 463190489 664 False 809.0 809 88.7570 1 667 1 chr1A.!!$F1 666
9 TraesCS4B01G229900 chr3D 589708766 589709445 679 True 734.0 734 86.5220 3 675 1 chr3D.!!$R1 672
10 TraesCS4B01G229900 chr1D 368281905 368282542 637 False 669.0 669 86.0030 1 626 1 chr1D.!!$F1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
984 1181 0.417437 TTCTCCCCTCCACATCTCCA 59.583 55.000 0.00 0.0 0.00 3.86 F
1448 1645 0.107508 ATGCCATTCTGTCTGGTCGG 60.108 55.000 0.00 0.0 36.10 4.79 F
1670 1873 2.288579 GGACCTGACATAACGTGACACA 60.289 50.000 6.37 0.0 0.00 3.72 F
1671 1874 2.729882 GACCTGACATAACGTGACACAC 59.270 50.000 6.37 0.0 0.00 3.82 F
1951 2161 2.887783 TGTTGGCGAATAAGCAAGGAAA 59.112 40.909 0.00 0.0 39.27 3.13 F
3427 3642 2.815478 CAGTGAGGAGCGGATAGTTTC 58.185 52.381 0.00 0.0 0.00 2.78 F
3797 4111 0.874607 ACGTCTCAGTCAACGCCAAC 60.875 55.000 0.00 0.0 42.47 3.77 F
3823 4137 1.073722 CTTGGCAGTTGAGGGCAGA 59.926 57.895 0.00 0.0 42.10 4.26 F
4369 4684 2.101415 TCTCATGCATGTAGAAGACCGG 59.899 50.000 25.43 0.0 0.00 5.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 1988 3.561960 CCCAAATCAGATTGGTCCTCACA 60.562 47.826 0.00 0.00 46.94 3.58 R
3057 3271 1.915489 TCTGAGGCTGGCAAAGGAATA 59.085 47.619 3.38 0.00 0.00 1.75 R
3194 3408 2.042831 GGGTCATCAGCTGGTGCAC 61.043 63.158 22.65 19.03 42.74 4.57 R
3390 3604 4.081406 TCACTGCTGGCATATCTTGTTTT 58.919 39.130 0.00 0.00 0.00 2.43 R
3797 4111 0.102120 TCAACTGCCAAGCCAAAACG 59.898 50.000 0.00 0.00 0.00 3.60 R
4838 5160 0.538287 GGTTTCTCCTTGCTGCCAGT 60.538 55.000 0.00 0.00 0.00 4.00 R
5112 5434 1.203025 GGTAGGCTCGGAGGGATCTAA 60.203 57.143 7.20 0.00 0.00 2.10 R
5129 5451 2.193127 CCTTCACCACATACCTGGGTA 58.807 52.381 1.70 1.70 35.34 3.69 R
6005 6337 1.076024 AGCATGGTGTCCATTGGTTCT 59.924 47.619 1.86 0.00 42.23 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
276 295 1.520342 GTGTGAGAGAGGCGGATGC 60.520 63.158 0.00 0.00 41.71 3.91
412 438 9.703892 TTCAAAGATCTTGTCAAAACAAAGAAA 57.296 25.926 9.17 0.00 44.53 2.52
537 577 4.058817 GGAGATGTGGGTCGATTTGATAC 58.941 47.826 0.00 0.00 0.00 2.24
560 601 7.338800 ACAATAAAAGGACTATCTGCAATGG 57.661 36.000 0.00 0.00 0.00 3.16
607 649 8.480501 CCTGATCATATCCCTTTGTTTTTCATT 58.519 33.333 0.00 0.00 0.00 2.57
652 694 3.777478 CATTGGGTGCATGAATTGAGTC 58.223 45.455 0.00 0.00 0.00 3.36
667 709 0.530744 GAGTCGGTGCACCTGATACA 59.469 55.000 32.28 8.31 0.00 2.29
696 738 3.390311 TGATGCATGGCTGAATCTCTAGT 59.610 43.478 2.46 0.00 38.17 2.57
699 741 2.871022 GCATGGCTGAATCTCTAGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
705 747 5.011431 TGGCTGAATCTCTAGTGTGGATATG 59.989 44.000 0.00 0.00 0.00 1.78
711 753 6.602410 ATCTCTAGTGTGGATATGTGATGG 57.398 41.667 0.00 0.00 0.00 3.51
716 758 2.800544 GTGTGGATATGTGATGGTACGC 59.199 50.000 0.00 0.00 0.00 4.42
735 777 2.221749 CGCCTCATCAAATGATACGGTG 59.778 50.000 0.00 3.07 38.85 4.94
751 793 1.410004 GGTGATCCCGTACCATCTCA 58.590 55.000 0.00 0.00 36.94 3.27
774 816 3.444388 GGCGTTAGATCTGGACTATAGGG 59.556 52.174 5.18 0.00 0.00 3.53
796 838 4.080638 GGACAGGATTGATCAACCTCTTCT 60.081 45.833 20.24 4.57 31.06 2.85
800 842 4.080638 AGGATTGATCAACCTCTTCTCCAC 60.081 45.833 19.27 0.32 0.00 4.02
935 1130 3.321111 TCAGCGTAGTCAAAGACCTCTTT 59.679 43.478 0.00 0.00 46.23 2.52
965 1160 2.483441 CCGATCTCACGGTCTGTCT 58.517 57.895 0.00 0.00 46.70 3.41
984 1181 0.417437 TTCTCCCCTCCACATCTCCA 59.583 55.000 0.00 0.00 0.00 3.86
985 1182 0.417437 TCTCCCCTCCACATCTCCAA 59.583 55.000 0.00 0.00 0.00 3.53
1124 1321 1.993391 CGCTCCTCCCCCTAAACCA 60.993 63.158 0.00 0.00 0.00 3.67
1333 1530 4.933064 CCCATCCGCGAGCGACTC 62.933 72.222 19.72 0.00 42.83 3.36
1396 1593 1.154263 CGTCGAGTTCACCGGACTC 60.154 63.158 9.46 10.42 40.05 3.36
1448 1645 0.107508 ATGCCATTCTGTCTGGTCGG 60.108 55.000 0.00 0.00 36.10 4.79
1480 1677 5.124457 AGTTTCACATTGGTATCAGCATGTC 59.876 40.000 0.00 0.00 37.40 3.06
1559 1756 2.750807 GCATTGTACCTGCCCTCATGAT 60.751 50.000 0.00 0.00 33.44 2.45
1577 1774 7.385205 CCTCATGATTCCACTAACTTTATACGG 59.615 40.741 0.00 0.00 0.00 4.02
1663 1866 6.570692 AGTTTATGTAGGACCTGACATAACG 58.429 40.000 22.74 0.00 44.30 3.18
1670 1873 2.288579 GGACCTGACATAACGTGACACA 60.289 50.000 6.37 0.00 0.00 3.72
1671 1874 2.729882 GACCTGACATAACGTGACACAC 59.270 50.000 6.37 0.00 0.00 3.82
1688 1891 7.265673 GTGACACACTAATGCTCTCCTTATTA 58.734 38.462 0.00 0.00 0.00 0.98
1698 1901 7.872113 ATGCTCTCCTTATTAAAAACCTCTG 57.128 36.000 0.00 0.00 0.00 3.35
1835 2038 3.567164 CAGTCAGTTTGCATGGTTTCTCT 59.433 43.478 0.00 0.00 0.00 3.10
1951 2161 2.887783 TGTTGGCGAATAAGCAAGGAAA 59.112 40.909 0.00 0.00 39.27 3.13
1959 2169 5.060940 GCGAATAAGCAAGGAAAATGTTGTC 59.939 40.000 0.00 0.00 37.05 3.18
2098 2309 6.151985 TGAGTTTGTTAAGAACCAACACACAT 59.848 34.615 8.47 0.00 38.46 3.21
2106 2317 8.878769 GTTAAGAACCAACACACATTGAAAATT 58.121 29.630 0.00 0.00 0.00 1.82
2108 2319 7.920160 AGAACCAACACACATTGAAAATTTT 57.080 28.000 2.28 2.28 0.00 1.82
2114 2325 6.272698 ACACACATTGAAAATTTTCTTCGC 57.727 33.333 26.73 6.12 38.02 4.70
2191 2402 7.550906 AGGTTTTCTTAGTTCTGCTATGATGAC 59.449 37.037 0.00 0.00 34.92 3.06
2215 2426 5.010617 CCACTTATAAGTTTTTGCCCACACT 59.989 40.000 15.60 0.00 37.08 3.55
2244 2455 6.636044 CACTTGCTTTTCTGCTTCTTTTAGAG 59.364 38.462 0.00 0.00 0.00 2.43
2459 2671 3.650942 TGGATATTATCTTCCACCGGCTT 59.349 43.478 0.00 0.00 37.10 4.35
2464 2676 8.044908 GGATATTATCTTCCACCGGCTTAAATA 58.955 37.037 0.00 0.00 31.99 1.40
2546 2758 5.973651 ACACTGCTGATAATCGTAATGTG 57.026 39.130 0.00 0.00 0.00 3.21
2590 2802 4.422073 TCTGTTTTCTGTGTGGATCAGT 57.578 40.909 0.00 0.00 34.86 3.41
2620 2833 5.312120 ACTGTAGTATATGCACGCCTATC 57.688 43.478 0.00 0.00 0.00 2.08
2828 3042 4.992951 AGGCTTTGCAAAACTCAATTCATC 59.007 37.500 13.84 0.00 0.00 2.92
3018 3232 6.388619 AAGCTCCTTAGTTTTCTATCCCAA 57.611 37.500 0.00 0.00 31.96 4.12
3057 3271 3.710677 AGCCAGCTGATCAGAACTCTTAT 59.289 43.478 27.04 0.86 0.00 1.73
3194 3408 6.516739 TGAAGACAGTAAGAGTACATCTGG 57.483 41.667 0.00 0.00 38.67 3.86
3340 3554 8.303876 GCATACTTTCCTTTTTGAGTGGATTTA 58.696 33.333 0.00 0.00 0.00 1.40
3427 3642 2.815478 CAGTGAGGAGCGGATAGTTTC 58.185 52.381 0.00 0.00 0.00 2.78
3473 3688 5.301551 TGCCGCTGATAAATGATAATTTGGT 59.698 36.000 0.00 0.00 0.00 3.67
3643 3954 3.803082 CACGTTCGCCCTGCCATG 61.803 66.667 0.00 0.00 0.00 3.66
3797 4111 0.874607 ACGTCTCAGTCAACGCCAAC 60.875 55.000 0.00 0.00 42.47 3.77
3823 4137 1.073722 CTTGGCAGTTGAGGGCAGA 59.926 57.895 0.00 0.00 42.10 4.26
3872 4186 7.592938 TCTCAACATTGCTTTGGTATTTAGTG 58.407 34.615 0.00 0.00 0.00 2.74
3919 4233 6.490040 AGAATTTGTACTATGTTGCAACCTGT 59.510 34.615 26.14 21.58 0.00 4.00
4027 4342 2.530460 AGTGCCCCAAATGCAAGATA 57.470 45.000 0.00 0.00 41.06 1.98
4125 4440 9.965902 ATTTCAGAAAGTGGATGATAGTAAAGT 57.034 29.630 1.28 0.00 0.00 2.66
4127 4442 9.871238 TTCAGAAAGTGGATGATAGTAAAGTAC 57.129 33.333 0.00 0.00 0.00 2.73
4128 4443 9.256228 TCAGAAAGTGGATGATAGTAAAGTACT 57.744 33.333 0.00 0.00 42.68 2.73
4129 4444 9.522804 CAGAAAGTGGATGATAGTAAAGTACTC 57.477 37.037 0.00 0.00 40.14 2.59
4130 4445 8.697292 AGAAAGTGGATGATAGTAAAGTACTCC 58.303 37.037 0.00 0.00 40.14 3.85
4131 4446 6.980416 AGTGGATGATAGTAAAGTACTCCC 57.020 41.667 0.00 0.00 40.14 4.30
4132 4447 6.684538 AGTGGATGATAGTAAAGTACTCCCT 58.315 40.000 0.00 0.00 40.14 4.20
4133 4448 6.778559 AGTGGATGATAGTAAAGTACTCCCTC 59.221 42.308 0.00 0.00 40.14 4.30
4134 4449 6.015265 GTGGATGATAGTAAAGTACTCCCTCC 60.015 46.154 0.00 0.00 40.14 4.30
4135 4450 5.183522 GGATGATAGTAAAGTACTCCCTCCG 59.816 48.000 0.00 0.00 40.14 4.63
4136 4451 5.121380 TGATAGTAAAGTACTCCCTCCGT 57.879 43.478 0.00 0.00 40.14 4.69
4137 4452 6.252599 TGATAGTAAAGTACTCCCTCCGTA 57.747 41.667 0.00 0.00 40.14 4.02
4138 4453 6.662755 TGATAGTAAAGTACTCCCTCCGTAA 58.337 40.000 0.00 0.00 40.14 3.18
4139 4454 7.118723 TGATAGTAAAGTACTCCCTCCGTAAA 58.881 38.462 0.00 0.00 40.14 2.01
4140 4455 5.911378 AGTAAAGTACTCCCTCCGTAAAG 57.089 43.478 0.00 0.00 32.47 1.85
4141 4456 5.574188 AGTAAAGTACTCCCTCCGTAAAGA 58.426 41.667 0.00 0.00 32.47 2.52
4142 4457 6.012745 AGTAAAGTACTCCCTCCGTAAAGAA 58.987 40.000 0.00 0.00 32.47 2.52
4143 4458 5.813513 AAAGTACTCCCTCCGTAAAGAAA 57.186 39.130 0.00 0.00 0.00 2.52
4144 4459 6.370186 AAAGTACTCCCTCCGTAAAGAAAT 57.630 37.500 0.00 0.00 0.00 2.17
4145 4460 7.486407 AAAGTACTCCCTCCGTAAAGAAATA 57.514 36.000 0.00 0.00 0.00 1.40
4146 4461 7.672122 AAGTACTCCCTCCGTAAAGAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
4147 4462 8.773033 AAGTACTCCCTCCGTAAAGAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
4148 4463 8.773033 AGTACTCCCTCCGTAAAGAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
4149 4464 8.858094 AGTACTCCCTCCGTAAAGAAATATAAG 58.142 37.037 0.00 0.00 0.00 1.73
4150 4465 7.909485 ACTCCCTCCGTAAAGAAATATAAGA 57.091 36.000 0.00 0.00 0.00 2.10
4151 4466 7.953752 ACTCCCTCCGTAAAGAAATATAAGAG 58.046 38.462 0.00 0.00 0.00 2.85
4152 4467 7.564292 ACTCCCTCCGTAAAGAAATATAAGAGT 59.436 37.037 0.00 0.00 0.00 3.24
4153 4468 7.723324 TCCCTCCGTAAAGAAATATAAGAGTG 58.277 38.462 0.00 0.00 0.00 3.51
4154 4469 7.343833 TCCCTCCGTAAAGAAATATAAGAGTGT 59.656 37.037 0.00 0.00 0.00 3.55
4155 4470 7.985752 CCCTCCGTAAAGAAATATAAGAGTGTT 59.014 37.037 0.00 0.00 0.00 3.32
4156 4471 9.379791 CCTCCGTAAAGAAATATAAGAGTGTTT 57.620 33.333 0.00 0.00 0.00 2.83
4185 4500 6.607735 ACTACTCTAGTGATCTAAACGCTC 57.392 41.667 0.00 0.00 37.69 5.03
4186 4501 6.350906 ACTACTCTAGTGATCTAAACGCTCT 58.649 40.000 0.00 0.00 37.69 4.09
4187 4502 6.824704 ACTACTCTAGTGATCTAAACGCTCTT 59.175 38.462 0.00 0.00 37.69 2.85
4188 4503 7.986320 ACTACTCTAGTGATCTAAACGCTCTTA 59.014 37.037 0.00 0.00 37.69 2.10
4189 4504 7.811117 ACTCTAGTGATCTAAACGCTCTTAT 57.189 36.000 0.00 0.00 0.00 1.73
4190 4505 8.905660 ACTCTAGTGATCTAAACGCTCTTATA 57.094 34.615 0.00 0.00 0.00 0.98
4191 4506 9.509956 ACTCTAGTGATCTAAACGCTCTTATAT 57.490 33.333 0.00 0.00 0.00 0.86
4204 4519 8.649973 AACGCTCTTATATTTCTTTACAGAGG 57.350 34.615 0.00 0.00 0.00 3.69
4205 4520 7.210873 ACGCTCTTATATTTCTTTACAGAGGG 58.789 38.462 8.36 8.36 42.53 4.30
4279 4594 8.918202 AGTTGATTTCCTGTTGTAAATCAGTA 57.082 30.769 9.61 0.00 46.88 2.74
4369 4684 2.101415 TCTCATGCATGTAGAAGACCGG 59.899 50.000 25.43 0.00 0.00 5.28
4376 4691 3.430929 GCATGTAGAAGACCGGTCAGAAT 60.431 47.826 35.00 19.89 0.00 2.40
4406 4721 9.428097 GAAAAGATCCAAATGCTTAAGAACATT 57.572 29.630 6.67 4.62 38.11 2.71
4525 4840 9.985730 TGCTGAAGAATATGTGAAGAAATTTTT 57.014 25.926 0.00 0.00 0.00 1.94
4566 4883 9.822185 ATTATCCCTTTTAAGATTGTTGAATGC 57.178 29.630 0.00 0.00 0.00 3.56
4601 4918 6.258160 CCACTATTTTCCTGCAAGTTTATCG 58.742 40.000 0.00 0.00 0.00 2.92
4617 4934 2.779755 ATCGTGCCATTACTCCAACA 57.220 45.000 0.00 0.00 0.00 3.33
4622 4939 2.423538 GTGCCATTACTCCAACATCACC 59.576 50.000 0.00 0.00 0.00 4.02
4793 5115 8.980610 TGTTAATTGAGTTGCATTCATTTCAAG 58.019 29.630 10.37 0.00 32.33 3.02
4838 5160 4.967084 TTACTACTGGAAAGCACCTGAA 57.033 40.909 0.00 0.00 33.93 3.02
4921 5243 5.072741 ACAAGTACAGCAATCAAGTGGAAT 58.927 37.500 0.00 0.00 0.00 3.01
4958 5280 2.226437 GTGTAACCATGGACTTGCACAG 59.774 50.000 22.98 0.00 34.28 3.66
5112 5434 5.749462 TGTCCAATGGAACCATTTTTGTTT 58.251 33.333 15.33 0.00 43.32 2.83
5129 5451 1.763545 GTTTTAGATCCCTCCGAGCCT 59.236 52.381 0.00 0.00 0.00 4.58
5182 5504 9.435688 AACACTGCCCTTATAAAAATGAAAATC 57.564 29.630 0.00 0.00 0.00 2.17
5246 5568 0.400213 ATGGCCGTGGAGAGTTTTGA 59.600 50.000 0.00 0.00 0.00 2.69
5313 5635 8.239038 TCACTGGTGTTAAAACATTATGGAAA 57.761 30.769 0.00 0.00 41.59 3.13
5458 5780 0.179032 TGCCGAGTTTTTGCCAGAGA 60.179 50.000 0.00 0.00 0.00 3.10
5459 5781 0.519077 GCCGAGTTTTTGCCAGAGAG 59.481 55.000 0.00 0.00 0.00 3.20
5460 5782 1.160137 CCGAGTTTTTGCCAGAGAGG 58.840 55.000 0.00 0.00 41.84 3.69
5462 5784 2.289444 CCGAGTTTTTGCCAGAGAGGTA 60.289 50.000 0.00 0.00 40.61 3.08
5526 5855 3.594603 TTCCGAGTTTTTGCCACAAAA 57.405 38.095 1.50 1.50 0.00 2.44
5562 5891 5.565592 TGTAATTTGCATGCCTGAAGTAG 57.434 39.130 16.68 0.00 0.00 2.57
5583 5912 9.529325 AAGTAGTATTTTCTTGGCAACTTTTTC 57.471 29.630 0.00 0.00 37.61 2.29
5591 5920 4.644234 TCTTGGCAACTTTTTCTGTCATGA 59.356 37.500 0.00 0.00 31.25 3.07
5632 5961 0.747283 GGGCCTCTGCAATCTGAGTG 60.747 60.000 0.84 0.00 40.13 3.51
5690 6019 4.074259 TCTGATGGTCTGAAACATTGTGG 58.926 43.478 0.00 0.00 0.00 4.17
5691 6020 3.822735 CTGATGGTCTGAAACATTGTGGT 59.177 43.478 0.00 0.00 0.00 4.16
5692 6021 4.979335 TGATGGTCTGAAACATTGTGGTA 58.021 39.130 0.00 0.00 0.00 3.25
5693 6022 5.003160 TGATGGTCTGAAACATTGTGGTAG 58.997 41.667 0.00 0.00 0.00 3.18
5694 6023 4.698201 TGGTCTGAAACATTGTGGTAGA 57.302 40.909 0.00 0.00 0.00 2.59
5695 6024 4.385825 TGGTCTGAAACATTGTGGTAGAC 58.614 43.478 14.41 14.41 34.01 2.59
5696 6025 3.751698 GGTCTGAAACATTGTGGTAGACC 59.248 47.826 21.08 21.08 43.89 3.85
5799 6128 3.194005 TCTCTCTTCCACACACAAACC 57.806 47.619 0.00 0.00 0.00 3.27
5815 6145 3.056304 CAAACCGTGCCCTTTATTTGTG 58.944 45.455 0.00 0.00 0.00 3.33
5816 6146 2.279935 ACCGTGCCCTTTATTTGTGA 57.720 45.000 0.00 0.00 0.00 3.58
5817 6147 2.588620 ACCGTGCCCTTTATTTGTGAA 58.411 42.857 0.00 0.00 0.00 3.18
5818 6148 2.959707 ACCGTGCCCTTTATTTGTGAAA 59.040 40.909 0.00 0.00 0.00 2.69
5847 6177 5.855395 GCTGAAGAAAATAGTCTTTGCACTG 59.145 40.000 0.00 0.00 37.98 3.66
5884 6214 2.091541 CCAATATGCAAAGGTCACCGT 58.908 47.619 0.00 0.00 0.00 4.83
5963 6295 7.571080 TGCATATTTCTCTAAATGCACATCA 57.429 32.000 4.82 0.00 36.28 3.07
5969 6301 6.426980 TTCTCTAAATGCACATCACATCAC 57.573 37.500 0.00 0.00 0.00 3.06
6000 6332 6.051074 CCTGTGACTTATGTATGCATCAGAA 58.949 40.000 11.40 4.33 36.58 3.02
6001 6333 6.202379 CCTGTGACTTATGTATGCATCAGAAG 59.798 42.308 21.50 21.50 39.20 2.85
6002 6334 6.643388 TGTGACTTATGTATGCATCAGAAGT 58.357 36.000 25.49 25.49 45.70 3.01
6003 6335 7.105588 TGTGACTTATGTATGCATCAGAAGTT 58.894 34.615 25.74 16.54 43.97 2.66
6004 6336 7.278646 TGTGACTTATGTATGCATCAGAAGTTC 59.721 37.037 25.74 22.37 43.97 3.01
6005 6337 7.278646 GTGACTTATGTATGCATCAGAAGTTCA 59.721 37.037 25.74 22.23 43.97 3.18
6006 6338 7.493645 TGACTTATGTATGCATCAGAAGTTCAG 59.506 37.037 25.74 11.28 43.97 3.02
6007 6339 7.559486 ACTTATGTATGCATCAGAAGTTCAGA 58.441 34.615 22.38 2.64 42.21 3.27
6023 6355 2.794103 TCAGAACCAATGGACACCATG 58.206 47.619 6.16 0.00 44.40 3.66
6048 6380 3.622627 GCATCTCTGCTCCTTTATTGC 57.377 47.619 0.00 0.00 45.32 3.56
6061 6393 6.647334 TCCTTTATTGCAGACAATTCACAA 57.353 33.333 0.00 0.00 44.21 3.33
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
117 124 4.939509 AAATATGACGGTCAAAACGGAG 57.060 40.909 15.72 0.00 35.23 4.63
397 422 5.384063 TGACTGCTTTCTTTGTTTTGACA 57.616 34.783 0.00 0.00 0.00 3.58
412 438 3.859411 TTTGGAAACGTTTTGACTGCT 57.141 38.095 15.89 0.00 0.00 4.24
537 577 7.338800 ACCATTGCAGATAGTCCTTTTATTG 57.661 36.000 0.00 0.00 0.00 1.90
560 601 3.254903 GGTTGGTAGGTGGATTGTTGAAC 59.745 47.826 0.00 0.00 0.00 3.18
635 677 0.734889 CCGACTCAATTCATGCACCC 59.265 55.000 0.00 0.00 0.00 4.61
652 694 2.159043 AGAGAATGTATCAGGTGCACCG 60.159 50.000 29.68 23.21 42.08 4.94
667 709 3.292492 TCAGCCATGCATCAAGAGAAT 57.708 42.857 0.00 0.00 0.00 2.40
696 738 2.224185 GGCGTACCATCACATATCCACA 60.224 50.000 0.00 0.00 35.26 4.17
699 741 2.299013 TGAGGCGTACCATCACATATCC 59.701 50.000 0.00 0.00 39.06 2.59
705 747 2.309528 TTGATGAGGCGTACCATCAC 57.690 50.000 10.83 3.30 45.97 3.06
711 753 3.428870 CCGTATCATTTGATGAGGCGTAC 59.571 47.826 3.30 0.00 43.53 3.67
716 758 4.692625 GGATCACCGTATCATTTGATGAGG 59.307 45.833 3.30 8.48 43.53 3.86
735 777 0.318762 GCCTGAGATGGTACGGGATC 59.681 60.000 0.00 0.00 34.76 3.36
751 793 4.337145 CCTATAGTCCAGATCTAACGCCT 58.663 47.826 0.00 0.00 0.00 5.52
774 816 5.096443 AGAAGAGGTTGATCAATCCTGTC 57.904 43.478 25.07 21.18 0.00 3.51
796 838 4.728772 CCCTATGCATATTTTCCAGTGGA 58.271 43.478 8.12 8.12 0.00 4.02
894 1089 4.336101 CTGACTACTCTGTCGACGAAATC 58.664 47.826 11.62 2.84 39.64 2.17
965 1160 0.417437 TGGAGATGTGGAGGGGAGAA 59.583 55.000 0.00 0.00 0.00 2.87
984 1181 2.108952 AGCCATGGTTGGAAGAGACTTT 59.891 45.455 14.67 0.00 46.92 2.66
985 1182 1.707427 AGCCATGGTTGGAAGAGACTT 59.293 47.619 14.67 0.00 46.92 3.01
1096 1293 1.272769 GGGGAGGAGCGTGTGATATAC 59.727 57.143 0.00 0.00 0.00 1.47
1097 1294 1.629043 GGGGAGGAGCGTGTGATATA 58.371 55.000 0.00 0.00 0.00 0.86
1098 1295 1.122019 GGGGGAGGAGCGTGTGATAT 61.122 60.000 0.00 0.00 0.00 1.63
1124 1321 0.264955 TTTAGGGCTCGGAGGAGGAT 59.735 55.000 7.20 0.00 40.80 3.24
1159 1356 0.381089 ATGAGACGGTCGATTCGGAC 59.619 55.000 6.18 3.45 36.18 4.79
1396 1593 0.852777 CGACTGTTCAACACCTGACG 59.147 55.000 0.00 0.00 32.21 4.35
1405 1602 1.344438 AGAGGTGATGCGACTGTTCAA 59.656 47.619 0.00 0.00 0.00 2.69
1448 1645 7.553334 TGATACCAATGTGAAACTACTAGGAC 58.447 38.462 0.00 0.00 38.04 3.85
1480 1677 6.690530 TGTAAAATTGATTTGCTCCAAGGAG 58.309 36.000 11.80 11.80 37.58 3.69
1530 1727 1.538047 CAGGTACAATGCAAGGTGCT 58.462 50.000 8.61 0.00 45.31 4.40
1546 1743 0.549950 AGTGGAATCATGAGGGCAGG 59.450 55.000 0.09 0.00 0.00 4.85
1559 1756 5.979993 TGCATCCGTATAAAGTTAGTGGAA 58.020 37.500 0.00 0.00 0.00 3.53
1609 1810 5.689383 AGGTTTATGCGCACCATTAATAG 57.311 39.130 14.90 0.00 35.25 1.73
1663 1866 3.601443 AGGAGAGCATTAGTGTGTCAC 57.399 47.619 0.00 0.00 34.10 3.67
1670 1873 9.397280 GAGGTTTTTAATAAGGAGAGCATTAGT 57.603 33.333 0.00 0.00 0.00 2.24
1671 1874 9.620259 AGAGGTTTTTAATAAGGAGAGCATTAG 57.380 33.333 0.00 0.00 0.00 1.73
1688 1891 3.552068 GCACGCCAAATACAGAGGTTTTT 60.552 43.478 0.00 0.00 0.00 1.94
1698 1901 0.596082 ACCAACTGCACGCCAAATAC 59.404 50.000 0.00 0.00 0.00 1.89
1726 1929 3.519107 TCACTGTGCCATCCAATAGAAGA 59.481 43.478 2.12 0.00 0.00 2.87
1785 1988 3.561960 CCCAAATCAGATTGGTCCTCACA 60.562 47.826 0.00 0.00 46.94 3.58
1835 2038 8.537049 TCGGAATTAAAAACTCGAGATACAAA 57.463 30.769 21.68 8.01 0.00 2.83
1951 2161 8.194104 TGTTTTACAGCAATACTTGACAACATT 58.806 29.630 0.00 0.00 0.00 2.71
1959 2169 9.635632 CATGTTTTTGTTTTACAGCAATACTTG 57.364 29.630 0.00 0.00 0.00 3.16
2098 2309 5.890334 ACACAGAGCGAAGAAAATTTTCAA 58.110 33.333 28.00 0.00 39.61 2.69
2106 2317 7.549134 ACAATGATAATACACAGAGCGAAGAAA 59.451 33.333 0.00 0.00 0.00 2.52
2108 2319 6.476706 CACAATGATAATACACAGAGCGAAGA 59.523 38.462 0.00 0.00 0.00 2.87
2191 2402 5.010617 AGTGTGGGCAAAAACTTATAAGTGG 59.989 40.000 18.70 9.96 39.66 4.00
2215 2426 4.139786 AGAAGCAGAAAAGCAAGTGATCA 58.860 39.130 0.00 0.00 36.85 2.92
2546 2758 3.782046 ACGTACCTCATCTACACAATGC 58.218 45.455 0.00 0.00 0.00 3.56
2598 2811 4.158025 GGATAGGCGTGCATATACTACAGT 59.842 45.833 1.62 0.00 0.00 3.55
2620 2833 6.414732 TGATAACCAACATTAGTGAAGGAGG 58.585 40.000 7.48 0.00 0.00 4.30
3018 3232 2.502947 TGGCTCATAGCTCAGTGATGTT 59.497 45.455 0.00 0.00 41.99 2.71
3057 3271 1.915489 TCTGAGGCTGGCAAAGGAATA 59.085 47.619 3.38 0.00 0.00 1.75
3194 3408 2.042831 GGGTCATCAGCTGGTGCAC 61.043 63.158 22.65 19.03 42.74 4.57
3390 3604 4.081406 TCACTGCTGGCATATCTTGTTTT 58.919 39.130 0.00 0.00 0.00 2.43
3427 3642 7.192232 GGCAATGAGACAAAGCTTCTTTATAG 58.808 38.462 0.00 0.00 0.00 1.31
3707 4018 3.372025 GCCCTCCCTACAACTGATTTCAT 60.372 47.826 0.00 0.00 0.00 2.57
3797 4111 0.102120 TCAACTGCCAAGCCAAAACG 59.898 50.000 0.00 0.00 0.00 3.60
3823 4137 3.395941 AGAATGAGGGACTGTTTGGTTCT 59.604 43.478 0.00 0.00 41.55 3.01
3872 4186 8.911918 TTCTGACAGATTCTACTATAGAGGAC 57.088 38.462 5.87 0.00 35.96 3.85
3919 4233 8.774546 TTCAGTTGGGCATGGAATAATAAATA 57.225 30.769 0.00 0.00 0.00 1.40
4027 4342 8.848474 AGTTTGCATAGTAACATAGACTGTTT 57.152 30.769 2.09 0.00 45.98 2.83
4042 4357 6.801539 TCTTGACCAAGTTAGTTTGCATAG 57.198 37.500 9.31 0.00 39.38 2.23
4123 4438 8.773033 TTATATTTCTTTACGGAGGGAGTACT 57.227 34.615 0.00 0.00 0.00 2.73
4124 4439 8.854117 TCTTATATTTCTTTACGGAGGGAGTAC 58.146 37.037 0.00 0.00 0.00 2.73
4125 4440 9.075678 CTCTTATATTTCTTTACGGAGGGAGTA 57.924 37.037 0.00 0.00 0.00 2.59
4126 4441 7.564292 ACTCTTATATTTCTTTACGGAGGGAGT 59.436 37.037 0.00 0.00 0.00 3.85
4127 4442 7.868415 CACTCTTATATTTCTTTACGGAGGGAG 59.132 40.741 0.00 0.00 0.00 4.30
4128 4443 7.343833 ACACTCTTATATTTCTTTACGGAGGGA 59.656 37.037 0.00 0.00 0.00 4.20
4129 4444 7.498443 ACACTCTTATATTTCTTTACGGAGGG 58.502 38.462 0.00 0.00 0.00 4.30
4130 4445 8.943909 AACACTCTTATATTTCTTTACGGAGG 57.056 34.615 0.00 0.00 0.00 4.30
4162 4477 6.350906 AGAGCGTTTAGATCACTAGAGTAGT 58.649 40.000 0.00 0.00 37.82 2.73
4163 4478 6.854496 AGAGCGTTTAGATCACTAGAGTAG 57.146 41.667 0.00 0.00 37.82 2.57
4164 4479 8.905660 ATAAGAGCGTTTAGATCACTAGAGTA 57.094 34.615 0.00 0.00 37.82 2.59
4165 4480 7.811117 ATAAGAGCGTTTAGATCACTAGAGT 57.189 36.000 0.00 0.00 37.82 3.24
4178 4493 9.099454 CCTCTGTAAAGAAATATAAGAGCGTTT 57.901 33.333 0.00 0.00 0.00 3.60
4179 4494 7.711339 CCCTCTGTAAAGAAATATAAGAGCGTT 59.289 37.037 0.00 0.00 0.00 4.84
4180 4495 7.069578 TCCCTCTGTAAAGAAATATAAGAGCGT 59.930 37.037 0.00 0.00 0.00 5.07
4181 4496 7.434492 TCCCTCTGTAAAGAAATATAAGAGCG 58.566 38.462 0.00 0.00 0.00 5.03
4182 4497 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
4187 4502 9.931698 TCAGTACTCCCTCTGTAAAGAAATATA 57.068 33.333 0.00 0.00 33.89 0.86
4188 4503 8.840200 TCAGTACTCCCTCTGTAAAGAAATAT 57.160 34.615 0.00 0.00 33.89 1.28
4189 4504 8.660295 TTCAGTACTCCCTCTGTAAAGAAATA 57.340 34.615 0.00 0.00 33.89 1.40
4190 4505 7.235812 ACTTCAGTACTCCCTCTGTAAAGAAAT 59.764 37.037 0.00 0.00 33.89 2.17
4191 4506 6.553852 ACTTCAGTACTCCCTCTGTAAAGAAA 59.446 38.462 0.00 0.00 33.89 2.52
4192 4507 6.075984 ACTTCAGTACTCCCTCTGTAAAGAA 58.924 40.000 0.00 0.00 33.89 2.52
4193 4508 5.642165 ACTTCAGTACTCCCTCTGTAAAGA 58.358 41.667 0.00 0.00 33.89 2.52
4194 4509 5.986501 ACTTCAGTACTCCCTCTGTAAAG 57.013 43.478 0.00 0.00 33.89 1.85
4195 4510 5.245526 GGAACTTCAGTACTCCCTCTGTAAA 59.754 44.000 0.00 0.00 33.89 2.01
4196 4511 4.771054 GGAACTTCAGTACTCCCTCTGTAA 59.229 45.833 0.00 0.00 33.89 2.41
4197 4512 4.202641 TGGAACTTCAGTACTCCCTCTGTA 60.203 45.833 0.00 0.00 33.89 2.74
4198 4513 3.166679 GGAACTTCAGTACTCCCTCTGT 58.833 50.000 0.00 0.00 33.89 3.41
4199 4514 3.165875 TGGAACTTCAGTACTCCCTCTG 58.834 50.000 0.00 0.00 0.00 3.35
4200 4515 3.544698 TGGAACTTCAGTACTCCCTCT 57.455 47.619 0.00 0.00 0.00 3.69
4201 4516 3.833070 TCTTGGAACTTCAGTACTCCCTC 59.167 47.826 0.00 0.00 0.00 4.30
4202 4517 3.858135 TCTTGGAACTTCAGTACTCCCT 58.142 45.455 0.00 0.00 0.00 4.20
4203 4518 4.618920 TTCTTGGAACTTCAGTACTCCC 57.381 45.455 0.00 0.00 0.00 4.30
4204 4519 7.387643 ACTATTTCTTGGAACTTCAGTACTCC 58.612 38.462 0.00 0.00 0.00 3.85
4205 4520 8.308207 AGACTATTTCTTGGAACTTCAGTACTC 58.692 37.037 0.00 0.00 0.00 2.59
4376 4691 8.408043 TCTTAAGCATTTGGATCTTTTCAAGA 57.592 30.769 0.00 0.00 42.69 3.02
4406 4721 1.494960 AAAAGGGTCTTTTGGCAGCA 58.505 45.000 5.02 0.00 0.00 4.41
4525 4840 9.812347 AAAAGGGATAATATGATGCACTTGATA 57.188 29.630 0.00 0.00 0.00 2.15
4526 4841 8.716674 AAAAGGGATAATATGATGCACTTGAT 57.283 30.769 0.00 0.00 0.00 2.57
4527 4842 9.639563 TTAAAAGGGATAATATGATGCACTTGA 57.360 29.630 0.00 0.00 0.00 3.02
4528 4843 9.903682 CTTAAAAGGGATAATATGATGCACTTG 57.096 33.333 0.00 0.00 0.00 3.16
4582 4899 4.485163 GCACGATAAACTTGCAGGAAAAT 58.515 39.130 1.40 0.00 42.23 1.82
4583 4900 3.305064 GGCACGATAAACTTGCAGGAAAA 60.305 43.478 1.40 0.00 44.03 2.29
4601 4918 2.423538 GGTGATGTTGGAGTAATGGCAC 59.576 50.000 0.00 0.00 0.00 5.01
4617 4934 4.020573 TCAAGTTCTACAATCCACGGTGAT 60.021 41.667 10.28 0.00 0.00 3.06
4622 4939 9.329913 CTTTAAAATCAAGTTCTACAATCCACG 57.670 33.333 0.00 0.00 0.00 4.94
4668 4985 2.020720 TCGGTGTCAACAAGCACATTT 58.979 42.857 0.00 0.00 37.35 2.32
4793 5115 8.601845 AAAATTGCACCACCTAATTAAGAAAC 57.398 30.769 0.00 0.00 0.00 2.78
4838 5160 0.538287 GGTTTCTCCTTGCTGCCAGT 60.538 55.000 0.00 0.00 0.00 4.00
5112 5434 1.203025 GGTAGGCTCGGAGGGATCTAA 60.203 57.143 7.20 0.00 0.00 2.10
5129 5451 2.193127 CCTTCACCACATACCTGGGTA 58.807 52.381 1.70 1.70 35.34 3.69
5246 5568 4.592778 ACCCCAATGAGCAACAGTTAAATT 59.407 37.500 0.00 0.00 0.00 1.82
5337 5659 3.423539 AAGCCACATGAAAGCTGTCTA 57.576 42.857 5.28 0.00 36.84 2.59
5458 5780 6.296026 TCAGACATGCAAACTAAAAGTACCT 58.704 36.000 0.00 0.00 0.00 3.08
5459 5781 6.554334 TCAGACATGCAAACTAAAAGTACC 57.446 37.500 0.00 0.00 0.00 3.34
5460 5782 7.587757 CACTTCAGACATGCAAACTAAAAGTAC 59.412 37.037 0.00 0.00 0.00 2.73
5462 5784 6.318648 TCACTTCAGACATGCAAACTAAAAGT 59.681 34.615 0.00 2.00 0.00 2.66
5507 5836 3.810310 ATTTTGTGGCAAAAACTCGGA 57.190 38.095 1.39 0.00 32.12 4.55
5508 5837 6.423604 AGAATAATTTTGTGGCAAAAACTCGG 59.576 34.615 1.39 0.00 32.12 4.63
5562 5891 7.491048 TGACAGAAAAAGTTGCCAAGAAAATAC 59.509 33.333 0.00 0.00 0.00 1.89
5583 5912 5.749588 TGCATTTTCAAGTGTTTCATGACAG 59.250 36.000 0.00 0.00 0.00 3.51
5591 5920 5.453198 CCCCTAACTGCATTTTCAAGTGTTT 60.453 40.000 0.00 0.00 0.00 2.83
5632 5961 2.497273 AGGTCATGCATTAAGTTTGGGC 59.503 45.455 0.00 0.00 0.00 5.36
5690 6019 4.369182 CCAATGAATGGTCTACGGTCTAC 58.631 47.826 0.00 0.00 44.85 2.59
5691 6020 4.665833 CCAATGAATGGTCTACGGTCTA 57.334 45.455 0.00 0.00 44.85 2.59
5692 6021 3.543680 CCAATGAATGGTCTACGGTCT 57.456 47.619 0.00 0.00 44.85 3.85
5799 6128 4.497473 TCTTTCACAAATAAAGGGCACG 57.503 40.909 0.00 0.00 35.18 5.34
5815 6145 9.958234 AAAGACTATTTTCTTCAGCTTTCTTTC 57.042 29.630 0.00 0.00 34.60 2.62
5816 6146 9.741647 CAAAGACTATTTTCTTCAGCTTTCTTT 57.258 29.630 0.00 0.00 34.60 2.52
5817 6147 7.864882 GCAAAGACTATTTTCTTCAGCTTTCTT 59.135 33.333 0.00 0.00 34.60 2.52
5818 6148 7.013655 TGCAAAGACTATTTTCTTCAGCTTTCT 59.986 33.333 9.98 0.00 37.41 2.52
5847 6177 7.141363 GCATATTGGTATCAGGATTCAACAAC 58.859 38.462 0.00 0.00 0.00 3.32
5963 6295 3.987745 AGTCACAGGGATCTAGTGATGT 58.012 45.455 15.00 6.68 43.35 3.06
5969 6301 6.015095 TGCATACATAAGTCACAGGGATCTAG 60.015 42.308 0.00 0.00 0.00 2.43
6000 6332 2.174639 TGGTGTCCATTGGTTCTGAACT 59.825 45.455 19.05 0.00 0.00 3.01
6001 6333 2.582052 TGGTGTCCATTGGTTCTGAAC 58.418 47.619 12.05 12.05 0.00 3.18
6002 6334 3.156293 CATGGTGTCCATTGGTTCTGAA 58.844 45.455 1.86 0.00 42.23 3.02
6003 6335 2.794103 CATGGTGTCCATTGGTTCTGA 58.206 47.619 1.86 0.00 42.23 3.27
6004 6336 1.203052 GCATGGTGTCCATTGGTTCTG 59.797 52.381 1.86 0.00 42.23 3.02
6005 6337 1.076024 AGCATGGTGTCCATTGGTTCT 59.924 47.619 1.86 0.00 42.23 3.01
6006 6338 1.203052 CAGCATGGTGTCCATTGGTTC 59.797 52.381 16.80 0.00 42.23 3.62
6007 6339 1.203038 TCAGCATGGTGTCCATTGGTT 60.203 47.619 23.35 0.00 42.23 3.67
6048 6380 4.898829 TGAACTGGTTGTGAATTGTCTG 57.101 40.909 0.00 0.00 0.00 3.51
6061 6393 4.142600 GCGCTGAAGAAATATTGAACTGGT 60.143 41.667 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.