Multiple sequence alignment - TraesCS4B01G229700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G229700 chr4B 100.000 6102 0 0 2561 8662 480656454 480650353 0.000000e+00 11269.0
1 TraesCS4B01G229700 chr4B 100.000 2135 0 0 1 2135 480659014 480656880 0.000000e+00 3943.0
2 TraesCS4B01G229700 chr4B 95.122 656 32 0 1 656 480683830 480683175 0.000000e+00 1035.0
3 TraesCS4B01G229700 chr4B 91.806 659 45 3 1 656 550681402 550680750 0.000000e+00 909.0
4 TraesCS4B01G229700 chr4B 91.390 662 48 4 1 659 672345231 672344576 0.000000e+00 898.0
5 TraesCS4B01G229700 chr4B 80.178 449 65 19 7853 8286 64788624 64788185 1.820000e-81 315.0
6 TraesCS4B01G229700 chr4B 80.335 239 45 2 1144 1381 579729970 579730207 6.910000e-41 180.0
7 TraesCS4B01G229700 chr4B 74.004 527 87 34 8158 8661 425286012 425286511 1.500000e-37 169.0
8 TraesCS4B01G229700 chr4D 91.821 2164 140 21 5629 7778 390907516 390905376 0.000000e+00 2981.0
9 TraesCS4B01G229700 chr4D 89.877 1956 147 30 2561 4478 390910994 390909052 0.000000e+00 2468.0
10 TraesCS4B01G229700 chr4D 93.068 1356 71 12 790 2135 390912953 390911611 0.000000e+00 1962.0
11 TraesCS4B01G229700 chr4D 91.272 1077 85 7 4559 5631 390908784 390907713 0.000000e+00 1459.0
12 TraesCS4B01G229700 chr4D 86.049 896 97 26 7783 8662 390904840 390903957 0.000000e+00 937.0
13 TraesCS4B01G229700 chr4D 97.143 140 4 0 659 798 390913243 390913104 4.040000e-58 237.0
14 TraesCS4B01G229700 chr4D 80.335 239 45 2 1144 1381 464153138 464153375 6.910000e-41 180.0
15 TraesCS4B01G229700 chr4D 73.333 465 76 31 8158 8606 343550320 343550752 2.540000e-25 128.0
16 TraesCS4B01G229700 chr4A 90.023 2165 168 19 5629 7778 72578825 72576694 0.000000e+00 2758.0
17 TraesCS4B01G229700 chr4A 88.502 1983 149 37 2561 4496 72582226 72580276 0.000000e+00 2326.0
18 TraesCS4B01G229700 chr4A 92.570 1319 77 13 659 1966 72584037 72582729 0.000000e+00 1873.0
19 TraesCS4B01G229700 chr4A 90.068 1027 91 8 4610 5631 72580043 72579023 0.000000e+00 1321.0
20 TraesCS4B01G229700 chr4A 91.476 657 47 4 1 654 657056503 657055853 0.000000e+00 894.0
21 TraesCS4B01G229700 chr4A 85.123 894 93 28 7793 8662 72574547 72573670 0.000000e+00 878.0
22 TraesCS4B01G229700 chr4A 81.937 382 51 15 7776 8151 624974255 624974624 3.040000e-79 307.0
23 TraesCS4B01G229700 chr4A 79.339 242 48 2 1144 1384 5839660 5839420 1.500000e-37 169.0
24 TraesCS4B01G229700 chr5B 94.856 661 32 2 1 660 681088289 681087630 0.000000e+00 1031.0
25 TraesCS4B01G229700 chr5B 91.958 659 44 4 1 656 69100915 69100263 0.000000e+00 915.0
26 TraesCS4B01G229700 chr5B 91.212 660 49 3 1 657 710924529 710923876 0.000000e+00 889.0
27 TraesCS4B01G229700 chr5B 72.852 512 79 35 8085 8574 423233780 423234253 4.250000e-23 121.0
28 TraesCS4B01G229700 chr1B 94.954 654 33 0 1 654 315128169 315127516 0.000000e+00 1026.0
29 TraesCS4B01G229700 chr2B 91.970 660 41 7 1 656 64281574 64282225 0.000000e+00 915.0
30 TraesCS4B01G229700 chr2B 76.316 342 49 21 7854 8188 36398359 36398675 4.190000e-33 154.0
31 TraesCS4B01G229700 chr2B 75.371 337 49 23 8256 8573 381919462 381919783 1.960000e-26 132.0
32 TraesCS4B01G229700 chr2D 81.004 458 58 21 7939 8376 32177070 32176622 3.870000e-88 337.0
33 TraesCS4B01G229700 chr2D 80.469 256 29 17 8399 8642 569122394 569122640 8.940000e-40 176.0
34 TraesCS4B01G229700 chr1A 77.514 547 89 27 8034 8553 548554582 548555121 1.830000e-76 298.0
35 TraesCS4B01G229700 chr1A 78.298 470 69 26 7938 8390 90153752 90154205 1.110000e-68 272.0
36 TraesCS4B01G229700 chr1A 75.893 224 43 9 5685 5900 280852344 280852564 4.280000e-18 104.0
37 TraesCS4B01G229700 chr6D 77.778 504 76 26 7881 8368 444466513 444466030 2.380000e-70 278.0
38 TraesCS4B01G229700 chr6D 92.424 66 4 1 5697 5762 448418447 448418383 9.260000e-15 93.5
39 TraesCS4B01G229700 chr6D 88.235 51 6 0 5928 5978 229413497 229413447 2.610000e-05 62.1
40 TraesCS4B01G229700 chr6A 76.753 542 95 24 7834 8352 504887635 504887102 3.080000e-69 274.0
41 TraesCS4B01G229700 chr5A 79.054 444 56 28 7802 8226 41456102 41456527 3.990000e-68 270.0
42 TraesCS4B01G229700 chr5A 80.541 185 32 4 5690 5872 353174017 353173835 1.170000e-28 139.0
43 TraesCS4B01G229700 chr7D 78.166 229 31 12 8338 8552 458369244 458369021 2.540000e-25 128.0
44 TraesCS4B01G229700 chr7D 84.483 58 8 1 7783 7840 136579131 136579075 1.000000e-03 56.5
45 TraesCS4B01G229700 chr3B 76.096 251 39 11 8312 8553 3221490 3221252 2.560000e-20 111.0
46 TraesCS4B01G229700 chr3B 75.000 212 29 15 8340 8535 156869545 156869748 9.320000e-10 76.8
47 TraesCS4B01G229700 chr3B 95.000 40 2 0 7311 7350 816171296 816171257 7.260000e-06 63.9
48 TraesCS4B01G229700 chr7B 78.723 141 26 4 5240 5378 703933149 703933287 3.330000e-14 91.6
49 TraesCS4B01G229700 chr2A 80.460 87 15 2 5932 6017 260556078 260556163 2.020000e-06 65.8
50 TraesCS4B01G229700 chrUn 95.000 40 2 0 7311 7350 42326062 42326023 7.260000e-06 63.9
51 TraesCS4B01G229700 chrUn 95.000 40 2 0 7311 7350 399338302 399338341 7.260000e-06 63.9
52 TraesCS4B01G229700 chr3A 90.698 43 3 1 5933 5975 724321881 724321922 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G229700 chr4B 480650353 480659014 8661 True 7606.0 11269 100.000000 1 8662 2 chr4B.!!$R5 8661
1 TraesCS4B01G229700 chr4B 480683175 480683830 655 True 1035.0 1035 95.122000 1 656 1 chr4B.!!$R2 655
2 TraesCS4B01G229700 chr4B 550680750 550681402 652 True 909.0 909 91.806000 1 656 1 chr4B.!!$R3 655
3 TraesCS4B01G229700 chr4B 672344576 672345231 655 True 898.0 898 91.390000 1 659 1 chr4B.!!$R4 658
4 TraesCS4B01G229700 chr4D 390903957 390913243 9286 True 1674.0 2981 91.538333 659 8662 6 chr4D.!!$R1 8003
5 TraesCS4B01G229700 chr4A 72573670 72584037 10367 True 1831.2 2758 89.257200 659 8662 5 chr4A.!!$R3 8003
6 TraesCS4B01G229700 chr4A 657055853 657056503 650 True 894.0 894 91.476000 1 654 1 chr4A.!!$R2 653
7 TraesCS4B01G229700 chr5B 681087630 681088289 659 True 1031.0 1031 94.856000 1 660 1 chr5B.!!$R2 659
8 TraesCS4B01G229700 chr5B 69100263 69100915 652 True 915.0 915 91.958000 1 656 1 chr5B.!!$R1 655
9 TraesCS4B01G229700 chr5B 710923876 710924529 653 True 889.0 889 91.212000 1 657 1 chr5B.!!$R3 656
10 TraesCS4B01G229700 chr1B 315127516 315128169 653 True 1026.0 1026 94.954000 1 654 1 chr1B.!!$R1 653
11 TraesCS4B01G229700 chr2B 64281574 64282225 651 False 915.0 915 91.970000 1 656 1 chr2B.!!$F2 655
12 TraesCS4B01G229700 chr1A 548554582 548555121 539 False 298.0 298 77.514000 8034 8553 1 chr1A.!!$F3 519
13 TraesCS4B01G229700 chr6A 504887102 504887635 533 True 274.0 274 76.753000 7834 8352 1 chr6A.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
397 401 1.378382 TGCTGCTACCCCGTACGTA 60.378 57.895 15.21 0.00 0.00 3.57 F
1694 1876 0.036164 AGTTCCCGCAGTGTGCAATA 59.964 50.000 0.00 0.00 45.36 1.90 F
2922 3304 0.034089 AGGAAGGTGTATTGCCAGGC 60.034 55.000 3.66 3.66 0.00 4.85 F
3642 4045 0.034186 TGCTGGGACCTTTGCATAGG 60.034 55.000 20.36 20.36 41.31 2.57 F
4557 4988 0.038166 TCCATTTGAGAGGTGGTGGC 59.962 55.000 0.00 0.00 34.61 5.01 F
4648 5266 0.527817 GAAGATGCGGGAGTGGTACG 60.528 60.000 0.00 0.00 0.00 3.67 F
5000 5623 0.546598 GTGGGTCACATAAGGAGGGG 59.453 60.000 0.00 0.00 34.08 4.79 F
6432 7257 0.247460 TCTCGGACAACTGAGGCATG 59.753 55.000 0.00 0.00 46.29 4.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1697 1879 0.182775 GCGTCCAAGACCCCCATAAT 59.817 55.000 0.00 0.00 0.00 1.28 R
3623 4026 0.034186 CCTATGCAAAGGTCCCAGCA 60.034 55.000 0.00 3.30 41.73 4.41 R
4538 4969 0.038166 GCCACCACCTCTCAAATGGA 59.962 55.000 0.00 0.00 36.94 3.41 R
5550 6173 0.034896 TTGGGTCCTCTCTTGTTCGC 59.965 55.000 0.00 0.00 0.00 4.70 R
5664 6487 0.811915 GCAGCTAGAGACGACAAGGA 59.188 55.000 0.00 0.00 0.00 3.36 R
5670 6493 1.403323 CTCATGTGCAGCTAGAGACGA 59.597 52.381 0.00 0.00 0.00 4.20 R
6687 7516 0.107017 ACCACATGCTATGGGTCAGC 60.107 55.000 5.87 0.00 41.97 4.26 R
7771 8616 0.514691 CTGCTTGACTCGAGGCAAAC 59.485 55.000 32.28 28.28 34.21 2.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
222 223 2.615493 CCGCACCTTTTGAGTCCTGTAT 60.615 50.000 0.00 0.00 0.00 2.29
284 285 4.143242 CGACTACTAACTTCTTCGTCACGA 60.143 45.833 0.00 0.00 0.00 4.35
397 401 1.378382 TGCTGCTACCCCGTACGTA 60.378 57.895 15.21 0.00 0.00 3.57
506 510 5.350504 ACTTGCTATACTGTCTGCTCAAT 57.649 39.130 0.00 0.00 0.00 2.57
564 569 9.145865 GTTGTTTACCTTTTCTTTGTCAAATCA 57.854 29.630 0.00 0.00 0.00 2.57
690 695 5.049818 CCGCTCAATGAAGAATTAGTCATCC 60.050 44.000 4.29 0.00 33.31 3.51
723 728 9.364989 TCTCAAAAGAAAAACAACCAATGTAAG 57.635 29.630 0.00 0.00 42.99 2.34
748 753 2.239907 AGGCTTCTAGCTTAGTTTGGGG 59.760 50.000 0.00 0.00 41.99 4.96
798 803 3.884091 GCAAGCTGGATCATTCATTCTCT 59.116 43.478 0.00 0.00 0.00 3.10
1295 1466 1.320344 AAGGGCTATGTCGACGAGCA 61.320 55.000 31.44 9.84 37.98 4.26
1389 1560 1.445582 GTGGCTGGTAAGTCGGTCG 60.446 63.158 0.00 0.00 0.00 4.79
1443 1622 2.903135 GCCCATCTGCCTAGAGAAGTAT 59.097 50.000 0.00 0.00 36.14 2.12
1444 1623 4.090090 GCCCATCTGCCTAGAGAAGTATA 58.910 47.826 0.00 0.00 36.14 1.47
1518 1697 4.526438 ATTGTGCTTCCCTATTTAGCCT 57.474 40.909 0.00 0.00 34.03 4.58
1519 1698 5.646692 ATTGTGCTTCCCTATTTAGCCTA 57.353 39.130 0.00 0.00 34.03 3.93
1590 1772 6.200854 GTGAAACTTCCATCAATTTTGACACC 59.799 38.462 0.00 0.00 40.49 4.16
1593 1775 1.198867 TCCATCAATTTTGACACCGCG 59.801 47.619 0.00 0.00 40.49 6.46
1632 1814 1.193426 GGCTCGCGAAGAATGATAAGC 59.807 52.381 11.33 5.61 0.00 3.09
1649 1831 1.675641 GCAGTGAGGGCATTCCGTT 60.676 57.895 0.00 0.00 41.52 4.44
1671 1853 0.812549 GAGTGTCTCCCTCTTCGACC 59.187 60.000 0.00 0.00 0.00 4.79
1680 1862 1.511768 CTCTTCGACCGGGAGTTCC 59.488 63.158 6.32 0.00 0.00 3.62
1694 1876 0.036164 AGTTCCCGCAGTGTGCAATA 59.964 50.000 0.00 0.00 45.36 1.90
1697 1879 0.323302 TCCCGCAGTGTGCAATAGAA 59.677 50.000 0.00 0.00 45.36 2.10
1721 1903 2.358737 GGGTCTTGGACGCCACTG 60.359 66.667 3.81 0.00 39.17 3.66
1723 1905 2.741092 GTCTTGGACGCCACTGGA 59.259 61.111 0.00 0.00 30.78 3.86
1814 1998 0.886490 CGAACCCTGGATGCTATGCC 60.886 60.000 0.00 0.00 0.00 4.40
1815 1999 0.475906 GAACCCTGGATGCTATGCCT 59.524 55.000 0.00 0.00 0.00 4.75
1827 2011 5.105756 GGATGCTATGCCTTTTGTTGTTAGT 60.106 40.000 0.00 0.00 0.00 2.24
1829 2013 4.824537 TGCTATGCCTTTTGTTGTTAGTCA 59.175 37.500 0.00 0.00 0.00 3.41
1830 2014 5.154222 GCTATGCCTTTTGTTGTTAGTCAC 58.846 41.667 0.00 0.00 0.00 3.67
1846 2030 1.134965 GTCACCAGAGGAGGTTGATCG 60.135 57.143 0.00 0.00 40.77 3.69
1861 2045 3.934457 TGATCGTGTGCTTCTGAAGTA 57.066 42.857 17.97 11.52 0.00 2.24
1864 2048 0.435008 CGTGTGCTTCTGAAGTACGC 59.565 55.000 30.05 30.05 45.64 4.42
1912 2096 7.191551 CGTATCTTACTTCCTATCAAACGACA 58.808 38.462 0.00 0.00 0.00 4.35
1922 2106 1.013596 TCAAACGACAGTGCCTTGTG 58.986 50.000 0.00 0.00 0.00 3.33
1932 2116 3.580458 ACAGTGCCTTGTGTTCTCTCTAT 59.420 43.478 0.00 0.00 0.00 1.98
1946 2130 2.290367 CTCTCTATGTGCGGACTCAGAG 59.710 54.545 23.09 23.09 34.51 3.35
1952 2136 2.044555 TGCGGACTCAGAGGTACCG 61.045 63.158 20.99 20.99 45.26 4.02
1957 2141 1.303074 ACTCAGAGGTACCGCGACA 60.303 57.895 8.23 0.00 0.00 4.35
1961 2145 2.506438 GAGGTACCGCGACACTGC 60.506 66.667 8.23 0.00 0.00 4.40
1980 2164 1.479757 GCCCCCAACTGTTGTAAGGAA 60.480 52.381 18.38 0.00 0.00 3.36
1983 2167 3.146847 CCCCAACTGTTGTAAGGAAGTC 58.853 50.000 18.38 0.00 0.00 3.01
2019 2203 5.065731 GGTCATTACTCTCTGCTTCATTTGG 59.934 44.000 0.00 0.00 0.00 3.28
2025 2209 5.486526 ACTCTCTGCTTCATTTGGTTAGAG 58.513 41.667 0.00 0.00 35.27 2.43
2031 2215 4.941263 TGCTTCATTTGGTTAGAGCGTAAT 59.059 37.500 0.00 0.00 0.00 1.89
2058 2242 4.458708 GTGTGTTTGAGAAGATCGCTTTC 58.541 43.478 0.00 0.00 33.61 2.62
2074 2258 2.825532 GCTTTCCTGCCATCTTTGGTTA 59.174 45.455 0.00 0.00 45.57 2.85
2077 2261 5.127031 GCTTTCCTGCCATCTTTGGTTATTA 59.873 40.000 0.00 0.00 45.57 0.98
2081 2265 4.704540 CCTGCCATCTTTGGTTATTACACA 59.295 41.667 0.00 0.00 45.57 3.72
2087 2271 6.878923 CCATCTTTGGTTATTACACAGTCTCA 59.121 38.462 0.00 0.00 38.30 3.27
2100 2284 6.620877 ACACAGTCTCAGGTATTGGATTAA 57.379 37.500 0.00 0.00 0.00 1.40
2101 2285 6.407202 ACACAGTCTCAGGTATTGGATTAAC 58.593 40.000 0.00 0.00 0.00 2.01
2117 2301 5.071788 TGGATTAACACACTGAGTTCTCCTT 59.928 40.000 15.66 0.00 34.50 3.36
2120 2304 3.742433 ACACACTGAGTTCTCCTTCTG 57.258 47.619 0.00 0.00 0.00 3.02
2626 3001 6.068473 ACAAAAAGAAAACTCGGTGTATCC 57.932 37.500 0.00 0.00 0.00 2.59
2828 3210 1.724623 CCCACTTTGTATGTGTCGTCG 59.275 52.381 0.00 0.00 33.92 5.12
2886 3268 3.724508 TTAACATGTTGTGGCAACCTG 57.275 42.857 21.42 13.11 0.00 4.00
2901 3283 1.228228 CCTGGCCATAGTGGTGCAT 59.772 57.895 5.51 0.00 40.46 3.96
2917 3299 2.098117 GTGCATGAGGAAGGTGTATTGC 59.902 50.000 0.00 0.00 0.00 3.56
2919 3301 2.945440 GCATGAGGAAGGTGTATTGCCA 60.945 50.000 0.00 0.00 0.00 4.92
2922 3304 0.034089 AGGAAGGTGTATTGCCAGGC 60.034 55.000 3.66 3.66 0.00 4.85
2923 3305 0.034089 GGAAGGTGTATTGCCAGGCT 60.034 55.000 14.15 0.00 0.00 4.58
2924 3306 1.383523 GAAGGTGTATTGCCAGGCTC 58.616 55.000 14.15 1.35 0.00 4.70
2925 3307 0.392998 AAGGTGTATTGCCAGGCTCG 60.393 55.000 14.15 0.00 0.00 5.03
2966 3349 1.285962 CATGTTCCCTTCCATGGAGGT 59.714 52.381 21.40 0.00 39.02 3.85
2974 3357 5.424068 TCCCTTCCATGGAGGTATCATTAT 58.576 41.667 21.40 0.00 39.02 1.28
3005 3388 2.844654 TCTCTCCTCTGGATCTTGCT 57.155 50.000 0.00 0.00 0.00 3.91
3036 3420 3.941483 GAGTATTGTCCTGTGGAATGGTG 59.059 47.826 0.00 0.00 31.38 4.17
3044 3428 2.751259 CCTGTGGAATGGTGTCTTCATG 59.249 50.000 0.00 0.00 0.00 3.07
3070 3454 0.391130 GACTCCTACATGGTTGCGCA 60.391 55.000 5.66 5.66 37.07 6.09
3120 3504 1.901464 GGGTTGTCGGCATGTTGGT 60.901 57.895 0.00 0.00 0.00 3.67
3178 3562 2.552599 TGTGTGCGGGATGAGTTTTA 57.447 45.000 0.00 0.00 0.00 1.52
3359 3751 8.591312 TGAAAGTTTCAAATTCTAAAAGTTGCG 58.409 29.630 15.92 0.00 39.64 4.85
3440 3837 3.858638 AGGGAACTTTCTGGGTATGGATT 59.141 43.478 0.00 0.00 37.44 3.01
3505 3902 0.677731 CTTCATCTTTGGGGCAGCGA 60.678 55.000 0.00 0.00 0.00 4.93
3535 3932 4.035208 GTGCTTCTATTATTTGGTGGGTCG 59.965 45.833 0.00 0.00 0.00 4.79
3623 4026 1.380302 GAGTGGGGTGATGTGGCTT 59.620 57.895 0.00 0.00 0.00 4.35
3627 4030 2.345760 GGGGTGATGTGGCTTGCTG 61.346 63.158 0.00 0.00 0.00 4.41
3642 4045 0.034186 TGCTGGGACCTTTGCATAGG 60.034 55.000 20.36 20.36 41.31 2.57
3710 4117 4.447138 AATATGTTTATTCCCTCGCCCA 57.553 40.909 0.00 0.00 0.00 5.36
3714 4121 2.775384 TGTTTATTCCCTCGCCCATACT 59.225 45.455 0.00 0.00 0.00 2.12
3749 4156 4.805219 CATATGTGACATGCATCCATTGG 58.195 43.478 8.61 0.00 0.00 3.16
3809 4216 3.762407 TTGACACCCGATCTTCTTTCA 57.238 42.857 0.00 0.00 0.00 2.69
3853 4260 4.696899 GCTTCTTACGGTAGCCAATTTT 57.303 40.909 0.00 0.00 0.00 1.82
3854 4261 5.055642 GCTTCTTACGGTAGCCAATTTTT 57.944 39.130 0.00 0.00 0.00 1.94
3855 4262 5.093457 GCTTCTTACGGTAGCCAATTTTTC 58.907 41.667 0.00 0.00 0.00 2.29
3865 4291 7.121463 ACGGTAGCCAATTTTTCATGTAATGTA 59.879 33.333 0.00 0.00 46.80 2.29
3980 4406 8.749354 ACCCCAAATATCTTGAAGTTTGTATTC 58.251 33.333 6.17 0.00 31.42 1.75
4009 4435 6.019779 ACTTCTCTATAAGATAGGCTTGCG 57.980 41.667 0.00 0.00 37.42 4.85
4012 4438 4.154375 TCTCTATAAGATAGGCTTGCGTCG 59.846 45.833 0.00 0.00 37.42 5.12
4018 4444 1.324736 GATAGGCTTGCGTCGAAACAG 59.675 52.381 0.00 0.00 0.00 3.16
4025 4451 0.249531 TGCGTCGAAACAGGCACTAA 60.250 50.000 0.00 0.00 36.02 2.24
4026 4452 1.076332 GCGTCGAAACAGGCACTAAT 58.924 50.000 0.00 0.00 36.02 1.73
4027 4453 2.264813 GCGTCGAAACAGGCACTAATA 58.735 47.619 0.00 0.00 36.02 0.98
4043 4469 9.950496 AGGCACTAATATTAATGTAGATGGAAG 57.050 33.333 5.86 0.00 36.02 3.46
4127 4553 6.152932 ACAGAGTCGTAGTTTAAAGGTGAA 57.847 37.500 0.00 0.00 0.00 3.18
4177 4603 7.831753 TCACAATTCAAACTTTTAGTGTCCAA 58.168 30.769 0.00 0.00 0.00 3.53
4230 4656 8.966868 TGAGGGTGATAAAAGATACAAAATTCC 58.033 33.333 0.00 0.00 0.00 3.01
4303 4729 9.874205 TTCAAATTCATTAATGTTGAAGGATCC 57.126 29.630 20.42 2.48 36.60 3.36
4304 4730 8.190122 TCAAATTCATTAATGTTGAAGGATCCG 58.810 33.333 14.97 0.00 36.60 4.18
4306 4732 4.460263 TCATTAATGTTGAAGGATCCGGG 58.540 43.478 14.97 0.00 0.00 5.73
4307 4733 3.290948 TTAATGTTGAAGGATCCGGGG 57.709 47.619 5.98 0.00 0.00 5.73
4308 4734 0.258774 AATGTTGAAGGATCCGGGGG 59.741 55.000 5.98 0.00 0.00 5.40
4336 4762 4.383444 GGGGGTAAAGTAAGCGACTACAAT 60.383 45.833 0.00 0.00 37.44 2.71
4377 4804 6.539173 TGGAAATTAATGGTAGTGCGGATAT 58.461 36.000 0.00 0.00 0.00 1.63
4467 4898 6.258160 GCTTTAGCGCAATAAAGAGAAATGA 58.742 36.000 25.13 0.00 42.77 2.57
4485 4916 8.879342 AGAAATGATAGAATTAACCAGAGACG 57.121 34.615 0.00 0.00 0.00 4.18
4490 4921 6.323996 TGATAGAATTAACCAGAGACGTGGAT 59.676 38.462 0.00 0.00 40.44 3.41
4522 4953 9.626045 GATTTATACTCAACACTTCTTTTTGGG 57.374 33.333 0.00 0.00 0.00 4.12
4523 4954 7.519032 TTATACTCAACACTTCTTTTTGGGG 57.481 36.000 0.00 0.00 0.00 4.96
4524 4955 3.031013 ACTCAACACTTCTTTTTGGGGG 58.969 45.455 0.00 0.00 0.00 5.40
4547 4978 2.868899 GGGGGCTAATCTCCATTTGAG 58.131 52.381 0.00 0.00 42.90 3.02
4556 4987 1.630369 TCTCCATTTGAGAGGTGGTGG 59.370 52.381 0.00 0.00 45.29 4.61
4557 4988 0.038166 TCCATTTGAGAGGTGGTGGC 59.962 55.000 0.00 0.00 34.61 5.01
4570 5188 2.639286 GTGGCCTGACAAAGCACG 59.361 61.111 3.32 0.00 0.00 5.34
4574 5192 1.237285 GGCCTGACAAAGCACGACAT 61.237 55.000 0.00 0.00 0.00 3.06
4587 5205 2.604914 GCACGACATGATACCAAGTCAG 59.395 50.000 0.00 0.00 40.07 3.51
4593 5211 5.163550 CGACATGATACCAAGTCAGACCTTA 60.164 44.000 0.00 0.00 40.07 2.69
4599 5217 6.897966 TGATACCAAGTCAGACCTTATTCTCT 59.102 38.462 0.00 0.00 0.00 3.10
4600 5218 8.059461 TGATACCAAGTCAGACCTTATTCTCTA 58.941 37.037 0.00 0.00 0.00 2.43
4606 5224 5.538433 AGTCAGACCTTATTCTCTATGAGCC 59.462 44.000 0.00 0.00 0.00 4.70
4608 5226 6.717540 GTCAGACCTTATTCTCTATGAGCCTA 59.282 42.308 0.00 0.00 0.00 3.93
4647 5265 0.535335 TGAAGATGCGGGAGTGGTAC 59.465 55.000 0.00 0.00 0.00 3.34
4648 5266 0.527817 GAAGATGCGGGAGTGGTACG 60.528 60.000 0.00 0.00 0.00 3.67
4679 5297 6.906157 AAGAACATCAATGTCTTCAACCAT 57.094 33.333 0.00 0.00 40.80 3.55
4688 5306 2.611751 TGTCTTCAACCATGTGTTCACG 59.388 45.455 0.00 0.00 34.00 4.35
4712 5330 3.511934 GTCTATCTCGGGTAGATGCCAAT 59.488 47.826 0.00 0.00 44.95 3.16
4726 5346 1.634973 TGCCAATGGAGGATGAAGACA 59.365 47.619 2.05 0.00 0.00 3.41
4765 5385 6.070938 ACTCACTTTGTTACCATAGTCCTACC 60.071 42.308 0.00 0.00 31.49 3.18
4801 5422 7.401204 TCACTATCTGATACATGGCCAGAATAT 59.599 37.037 13.05 8.79 39.94 1.28
4802 5423 8.045507 CACTATCTGATACATGGCCAGAATATT 58.954 37.037 13.05 0.00 39.94 1.28
4803 5424 8.045507 ACTATCTGATACATGGCCAGAATATTG 58.954 37.037 13.05 5.81 39.94 1.90
4810 5431 2.368439 TGGCCAGAATATTGTCACTGC 58.632 47.619 0.00 0.00 0.00 4.40
4827 5448 2.179589 CTGCAAGCGACATTATTGTGC 58.820 47.619 0.00 0.44 35.79 4.57
4901 5522 3.036452 AGCATTGAAGGTATGGGCATT 57.964 42.857 0.00 0.00 0.00 3.56
4939 5560 3.747708 CGAGGTTGGAAAAAGGAGAAGGT 60.748 47.826 0.00 0.00 0.00 3.50
4947 5568 4.520874 GGAAAAAGGAGAAGGTGAAGAAGG 59.479 45.833 0.00 0.00 0.00 3.46
4952 5573 4.979335 AGGAGAAGGTGAAGAAGGAAAAG 58.021 43.478 0.00 0.00 0.00 2.27
5000 5623 0.546598 GTGGGTCACATAAGGAGGGG 59.453 60.000 0.00 0.00 34.08 4.79
5030 5653 6.014669 CCAACATGGGAAAAGATTGAAGGTAA 60.015 38.462 0.00 0.00 32.67 2.85
5036 5659 4.157840 GGAAAAGATTGAAGGTAACGCCAT 59.842 41.667 0.00 0.00 46.39 4.40
5039 5662 3.279434 AGATTGAAGGTAACGCCATTCC 58.721 45.455 0.00 0.00 46.39 3.01
5053 5676 3.698029 CCATTCCGGCAACATCTAAAG 57.302 47.619 0.00 0.00 0.00 1.85
5055 5678 3.694072 CCATTCCGGCAACATCTAAAGAA 59.306 43.478 0.00 0.00 0.00 2.52
5056 5679 4.201950 CCATTCCGGCAACATCTAAAGAAG 60.202 45.833 0.00 0.00 0.00 2.85
5058 5681 4.487714 TCCGGCAACATCTAAAGAAGAT 57.512 40.909 0.00 0.00 46.36 2.40
5081 5704 7.770897 AGATGATTTTGGTGATGACCTACTTAC 59.229 37.037 2.11 0.00 43.58 2.34
5122 5745 4.150627 CCATTGAAGCGTGGATATTAGACG 59.849 45.833 0.00 0.00 37.72 4.18
5144 5767 5.163468 ACGAAGTGAGCTCTTATCATGTGAT 60.163 40.000 16.19 0.68 42.51 3.06
5160 5783 5.181811 TCATGTGATGCTTAACAAAGAGTGG 59.818 40.000 0.00 0.00 0.00 4.00
5177 5800 4.409247 AGAGTGGTTCACTTCCTACAAGTT 59.591 41.667 1.90 0.00 45.44 2.66
5206 5829 4.640771 TTTGGAGTTGTCTATCAAGGCT 57.359 40.909 0.00 0.00 36.66 4.58
5239 5862 3.500331 TGCATTATGGGCACTGGAG 57.500 52.632 0.00 0.00 36.11 3.86
5323 5946 4.882427 GCCAAGGGTTAGGAGAAATCTAAC 59.118 45.833 0.00 0.00 43.32 2.34
5334 5957 4.218417 GGAGAAATCTAACTTTGCTTGGCA 59.782 41.667 0.00 0.00 36.47 4.92
5393 6016 2.235898 AGACAAGAAGACCATGAGGAGC 59.764 50.000 0.00 0.00 38.69 4.70
5396 6019 3.009916 ACAAGAAGACCATGAGGAGCAAT 59.990 43.478 0.00 0.00 38.69 3.56
5405 6028 4.263905 ACCATGAGGAGCAATAAGGACAAA 60.264 41.667 0.00 0.00 38.69 2.83
5438 6061 7.611855 GTGATAAAGGGAAAGAGGATCAAGAAA 59.388 37.037 0.00 0.00 37.82 2.52
5454 6077 9.849166 GGATCAAGAAAAATTTAACCATCGTTA 57.151 29.630 0.00 0.00 33.17 3.18
5513 6136 4.523173 TCATCAGTCGAGTTTACCAAGTCT 59.477 41.667 0.00 0.00 30.88 3.24
5599 6222 7.615582 ATCATACACATTTGTTCGAGTGAAT 57.384 32.000 7.17 0.00 37.15 2.57
5631 6254 7.166167 AGTTCAAGACGGTTAAGGACATATTT 58.834 34.615 0.00 0.00 0.00 1.40
5641 6464 6.183360 GGTTAAGGACATATTTGTTGGTCTCG 60.183 42.308 0.00 0.00 35.79 4.04
5659 6482 5.296780 GGTCTCGGCAATCAAGATGAAAATA 59.703 40.000 0.00 0.00 0.00 1.40
5664 6487 7.546358 TCGGCAATCAAGATGAAAATATTTGT 58.454 30.769 0.39 0.00 0.00 2.83
5711 6535 1.485066 GGCGGTATCCCTTCTTGAAGA 59.515 52.381 11.53 0.00 0.00 2.87
5798 6622 9.803315 TGCTATAATTGTCTAAGTCTTGTACTG 57.197 33.333 0.00 0.00 38.88 2.74
5810 6634 9.692749 CTAAGTCTTGTACTGAACTTGTTGATA 57.307 33.333 13.89 0.00 38.88 2.15
5825 6649 8.449251 ACTTGTTGATATTTTTGGCATTGTTT 57.551 26.923 0.00 0.00 0.00 2.83
5896 6721 1.101635 GGCCCGGCATTCTAACCTTC 61.102 60.000 12.58 0.00 0.00 3.46
5901 6726 3.509967 CCCGGCATTCTAACCTTCTTTTT 59.490 43.478 0.00 0.00 0.00 1.94
5941 6766 7.446106 TCATGTATATGGAAGGTTAGGTGTT 57.554 36.000 0.00 0.00 34.97 3.32
5942 6767 7.867921 TCATGTATATGGAAGGTTAGGTGTTT 58.132 34.615 0.00 0.00 34.97 2.83
5943 6768 7.773224 TCATGTATATGGAAGGTTAGGTGTTTG 59.227 37.037 0.00 0.00 34.97 2.93
5944 6769 7.260387 TGTATATGGAAGGTTAGGTGTTTGA 57.740 36.000 0.00 0.00 0.00 2.69
5945 6770 7.335627 TGTATATGGAAGGTTAGGTGTTTGAG 58.664 38.462 0.00 0.00 0.00 3.02
5946 6771 4.724279 ATGGAAGGTTAGGTGTTTGAGT 57.276 40.909 0.00 0.00 0.00 3.41
5947 6772 4.081322 TGGAAGGTTAGGTGTTTGAGTC 57.919 45.455 0.00 0.00 0.00 3.36
5948 6773 3.456644 TGGAAGGTTAGGTGTTTGAGTCA 59.543 43.478 0.00 0.00 0.00 3.41
5949 6774 4.080243 TGGAAGGTTAGGTGTTTGAGTCAA 60.080 41.667 0.08 0.08 0.00 3.18
5950 6775 4.885325 GGAAGGTTAGGTGTTTGAGTCAAA 59.115 41.667 14.35 14.35 0.00 2.69
5975 6800 5.050363 CACGTGTAAACCATGCCTATCATAC 60.050 44.000 7.58 0.00 33.19 2.39
6007 6832 7.658179 TCGCAGGATAAGCAAAATAGATTAG 57.342 36.000 0.00 0.00 0.00 1.73
6017 6842 7.396540 AGCAAAATAGATTAGACCAAGTTGG 57.603 36.000 20.76 20.76 45.02 3.77
6041 6866 2.663602 CGGAAGACACAAGATCACGAAG 59.336 50.000 0.00 0.00 0.00 3.79
6050 6875 3.186909 CAAGATCACGAAGGCGACAATA 58.813 45.455 0.00 0.00 41.64 1.90
6109 6934 3.237628 CGTGATGATCGATATGCGTCTT 58.762 45.455 0.00 0.00 41.80 3.01
6118 6943 2.622436 GATATGCGTCTTATGGCCTCC 58.378 52.381 3.32 0.00 0.00 4.30
6119 6944 0.317160 TATGCGTCTTATGGCCTCCG 59.683 55.000 3.32 0.00 0.00 4.63
6166 6991 2.229302 GTCGATCTAGTACATGGGAGCC 59.771 54.545 0.00 0.00 0.00 4.70
6216 7041 6.456447 TGTTCGTTGAACCTCGTTAATAAG 57.544 37.500 7.18 0.00 41.35 1.73
6227 7052 7.565323 ACCTCGTTAATAAGTATCGTCTCTT 57.435 36.000 0.00 0.00 0.00 2.85
6296 7121 9.950680 CTTTGTCAACTAATCATGTTAAACAGT 57.049 29.630 0.00 0.00 0.00 3.55
6301 7126 9.725019 TCAACTAATCATGTTAAACAGTGAGAT 57.275 29.630 0.00 0.00 0.00 2.75
6302 7127 9.764870 CAACTAATCATGTTAAACAGTGAGATG 57.235 33.333 0.00 0.00 0.00 2.90
6373 7198 3.433343 TGCATTTGACCTGAATGTGGAT 58.567 40.909 0.00 0.00 36.96 3.41
6400 7225 0.478072 TTTGGTGGAGTGATGCAGGT 59.522 50.000 0.00 0.00 0.00 4.00
6432 7257 0.247460 TCTCGGACAACTGAGGCATG 59.753 55.000 0.00 0.00 46.29 4.06
6557 7382 2.128771 TGCCAAATTCTACAGCCTCC 57.871 50.000 0.00 0.00 0.00 4.30
6656 7485 9.944663 TGAAACTAGTCAAATTGTTAATGTGTC 57.055 29.630 0.00 0.00 0.00 3.67
6715 7551 5.189928 CCCATAGCATGTGGTTAACTAACA 58.810 41.667 14.30 14.30 37.92 2.41
6723 7559 6.148811 GCATGTGGTTAACTAACAAGCTTCTA 59.851 38.462 23.00 0.00 36.05 2.10
6724 7560 7.148239 GCATGTGGTTAACTAACAAGCTTCTAT 60.148 37.037 23.00 5.40 36.05 1.98
6749 7585 0.953960 GGGAAACTGCAGGGTACACG 60.954 60.000 19.93 0.00 0.00 4.49
6755 7591 2.890474 GCAGGGTACACGGCATCG 60.890 66.667 15.80 0.00 43.02 3.84
6774 7610 1.946768 CGTTGTCATGGTCAACAAGGT 59.053 47.619 23.52 0.00 43.40 3.50
6782 7618 5.010012 GTCATGGTCAACAAGGTTGAAGATT 59.990 40.000 12.86 0.00 0.00 2.40
6967 7803 3.837146 TGGGCATTACCATCACAACATTT 59.163 39.130 0.00 0.00 42.05 2.32
7111 7954 2.478539 GCTTTCTGATTTTGGCCTAGCG 60.479 50.000 3.32 0.00 0.00 4.26
7215 8058 8.712228 ATCATGACTGGTACATAGACTTGATA 57.288 34.615 18.46 4.78 38.20 2.15
7379 8224 1.104577 GGCGAAAGGTGGTGGACAAA 61.105 55.000 0.00 0.00 0.00 2.83
7389 8234 2.124236 TGGACAAAAACCGGCCGT 60.124 55.556 26.12 9.63 0.00 5.68
7407 8252 1.533033 TCACGGGAACAGAGCCTCA 60.533 57.895 0.00 0.00 0.00 3.86
7442 8287 3.126831 GCCATACTTTCTCCATGACTCG 58.873 50.000 0.00 0.00 0.00 4.18
7559 8404 1.738099 CGTCAGCCCAAAGTCTCGG 60.738 63.158 0.00 0.00 0.00 4.63
7580 8425 2.126071 CAGATGTCCGCCGTCGTT 60.126 61.111 0.00 0.00 34.06 3.85
7610 8455 2.568090 CCGTTGCTTGCCATGGAC 59.432 61.111 18.40 7.64 0.00 4.02
7647 8492 0.947180 GTTCGTGTACACCGCACCAT 60.947 55.000 20.11 0.00 33.61 3.55
7667 8512 5.118990 CCATCGGAGAACAAATGACTACAT 58.881 41.667 0.00 0.00 43.58 2.29
7690 8535 6.089249 TCTGATGATGTCGTGTAATAGCAT 57.911 37.500 0.00 0.00 0.00 3.79
7703 8548 8.088365 TCGTGTAATAGCATGCATACTATTCTT 58.912 33.333 27.87 13.72 39.29 2.52
7778 8623 9.791801 AAACAATTATTCTATTTTGGTTTGCCT 57.208 25.926 0.00 0.00 35.27 4.75
7779 8624 9.435688 AACAATTATTCTATTTTGGTTTGCCTC 57.564 29.630 0.00 0.00 35.27 4.70
7791 9230 0.392706 TTTGCCTCGAGTCAAGCAGA 59.607 50.000 9.08 4.87 36.44 4.26
7937 11143 8.325421 TGGAAACGCTTTACATAAATCAGTTA 57.675 30.769 0.00 0.00 0.00 2.24
8002 11217 8.425577 AGAGAAAATGTTTCTCATGTATACGG 57.574 34.615 25.02 0.00 45.48 4.02
8005 11220 8.665685 AGAAAATGTTTCTCATGTATACGGAAC 58.334 33.333 0.00 0.00 36.81 3.62
8017 11233 8.822855 TCATGTATACGGAACATGTATGAAAAC 58.177 33.333 19.79 0.00 41.76 2.43
8244 11463 9.730420 ATGTTAAATGTGTACAGAAAAAGTGTC 57.270 29.630 0.00 0.00 0.00 3.67
8261 11481 5.164606 AGTGTCGACCATGTGTTAAAAAC 57.835 39.130 14.12 0.00 0.00 2.43
8262 11482 4.879545 AGTGTCGACCATGTGTTAAAAACT 59.120 37.500 14.12 1.66 0.00 2.66
8263 11483 4.967575 GTGTCGACCATGTGTTAAAAACTG 59.032 41.667 14.12 0.00 0.00 3.16
8465 11789 8.722342 TTTGTAGAACGTTAATCAAGCATTTC 57.278 30.769 0.00 0.00 0.00 2.17
8621 12045 6.999871 ACCCGAGAGAAAACTAAATAAAACCA 59.000 34.615 0.00 0.00 0.00 3.67
8625 12049 9.341899 CGAGAGAAAACTAAATAAAACCAATGG 57.658 33.333 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
222 223 2.661176 ACCTTATCACCCTTCTCCCA 57.339 50.000 0.00 0.00 0.00 4.37
397 401 5.217400 ACCTCTAATAGAAAGGGGACGAAT 58.783 41.667 0.00 0.00 36.64 3.34
550 555 5.163426 ACAAGCCATGTGATTTGACAAAGAA 60.163 36.000 6.77 0.00 41.93 2.52
564 569 3.828451 AGCAGTGATAAAACAAGCCATGT 59.172 39.130 0.00 0.00 46.82 3.21
690 695 8.026607 TGGTTGTTTTTCTTTTGAGACTACAAG 58.973 33.333 0.00 0.00 0.00 3.16
723 728 5.760743 CCCAAACTAAGCTAGAAGCCTATTC 59.239 44.000 0.00 0.00 43.77 1.75
773 778 1.089112 TGAATGATCCAGCTTGCACG 58.911 50.000 0.00 0.00 0.00 5.34
798 803 3.974293 GCCTTTTGACCCCGGGGA 61.974 66.667 46.68 23.52 38.96 4.81
1095 1266 4.124351 TCGTCGTTAGGCAGCGGG 62.124 66.667 0.00 0.00 0.00 6.13
1152 1323 0.994995 CAAGCGACAAGGACAGATCG 59.005 55.000 0.00 0.00 37.63 3.69
1272 1443 2.093890 TCGTCGACATAGCCCTTGTAA 58.906 47.619 17.16 0.00 0.00 2.41
1408 1579 0.932955 ATGGGCCCATGTATGAACCA 59.067 50.000 37.06 4.09 35.03 3.67
1409 1580 1.145738 AGATGGGCCCATGTATGAACC 59.854 52.381 42.21 23.66 36.70 3.62
1413 1584 2.649831 GCAGATGGGCCCATGTATG 58.350 57.895 42.21 32.73 36.70 2.39
1423 1602 4.159506 GCTATACTTCTCTAGGCAGATGGG 59.840 50.000 0.00 0.00 0.00 4.00
1443 1622 8.424133 TCTCTCATATATGCTTTCAAGTTGCTA 58.576 33.333 7.92 0.00 0.00 3.49
1444 1623 7.278135 TCTCTCATATATGCTTTCAAGTTGCT 58.722 34.615 7.92 0.00 0.00 3.91
1525 1704 0.618458 TAAGTGCCAAGCAGGGTAGG 59.382 55.000 0.00 0.00 40.08 3.18
1574 1756 1.616620 CGCGGTGTCAAAATTGATGG 58.383 50.000 0.00 0.00 39.73 3.51
1632 1814 2.009774 CTAAACGGAATGCCCTCACTG 58.990 52.381 0.00 0.00 0.00 3.66
1649 1831 3.345414 GTCGAAGAGGGAGACACTCTAA 58.655 50.000 3.92 0.00 44.17 2.10
1694 1876 2.172717 CGTCCAAGACCCCCATAATTCT 59.827 50.000 0.00 0.00 0.00 2.40
1697 1879 0.182775 GCGTCCAAGACCCCCATAAT 59.817 55.000 0.00 0.00 0.00 1.28
1721 1903 3.378427 GCCTCACCAATACTTTGATGTCC 59.622 47.826 0.00 0.00 34.60 4.02
1723 1905 4.307032 AGCCTCACCAATACTTTGATGT 57.693 40.909 0.00 0.00 34.60 3.06
1768 1952 2.679082 GCCTCCTCACTAGGTAATCCA 58.321 52.381 0.00 0.00 44.09 3.41
1804 1988 5.954335 ACTAACAACAAAAGGCATAGCATC 58.046 37.500 0.00 0.00 0.00 3.91
1814 1998 5.123227 TCCTCTGGTGACTAACAACAAAAG 58.877 41.667 0.00 0.00 46.12 2.27
1815 1999 5.105567 TCCTCTGGTGACTAACAACAAAA 57.894 39.130 0.00 0.00 46.12 2.44
1827 2011 1.186200 CGATCAACCTCCTCTGGTGA 58.814 55.000 0.00 0.00 40.73 4.02
1829 2013 0.898320 CACGATCAACCTCCTCTGGT 59.102 55.000 0.00 0.00 43.11 4.00
1830 2014 0.898320 ACACGATCAACCTCCTCTGG 59.102 55.000 0.00 0.00 0.00 3.86
1846 2030 0.435008 CGCGTACTTCAGAAGCACAC 59.565 55.000 10.33 0.75 0.00 3.82
1864 2048 0.519175 CCAAATCTCTCGCGCAAACG 60.519 55.000 8.75 0.00 44.07 3.60
1872 2056 4.832590 AGATACGGTACCAAATCTCTCG 57.167 45.455 16.69 1.32 0.00 4.04
1922 2106 2.423892 TGAGTCCGCACATAGAGAGAAC 59.576 50.000 0.00 0.00 0.00 3.01
1932 2116 1.248785 GGTACCTCTGAGTCCGCACA 61.249 60.000 4.06 0.00 0.00 4.57
1952 2136 4.643387 AGTTGGGGGCAGTGTCGC 62.643 66.667 2.61 2.61 0.00 5.19
1957 2141 0.553819 TTACAACAGTTGGGGGCAGT 59.446 50.000 17.76 0.00 34.12 4.40
1961 2145 2.158519 ACTTCCTTACAACAGTTGGGGG 60.159 50.000 17.76 14.69 34.12 5.40
1980 2164 6.725364 AGTAATGACCATCAAGGAATTGACT 58.275 36.000 0.00 0.00 41.22 3.41
1983 2167 7.012138 CAGAGAGTAATGACCATCAAGGAATTG 59.988 40.741 0.00 0.00 41.22 2.32
1993 2177 5.627182 ATGAAGCAGAGAGTAATGACCAT 57.373 39.130 0.00 0.00 0.00 3.55
1994 2178 5.426689 AATGAAGCAGAGAGTAATGACCA 57.573 39.130 0.00 0.00 0.00 4.02
1995 2179 5.065731 CCAAATGAAGCAGAGAGTAATGACC 59.934 44.000 0.00 0.00 0.00 4.02
1996 2180 5.645497 ACCAAATGAAGCAGAGAGTAATGAC 59.355 40.000 0.00 0.00 0.00 3.06
1997 2181 5.809001 ACCAAATGAAGCAGAGAGTAATGA 58.191 37.500 0.00 0.00 0.00 2.57
1998 2182 6.506500 AACCAAATGAAGCAGAGAGTAATG 57.493 37.500 0.00 0.00 0.00 1.90
1999 2183 7.624549 TCTAACCAAATGAAGCAGAGAGTAAT 58.375 34.615 0.00 0.00 0.00 1.89
2031 2215 4.084745 GCGATCTTCTCAAACACACGTTTA 60.085 41.667 0.00 0.00 43.57 2.01
2036 2220 4.458708 GAAAGCGATCTTCTCAAACACAC 58.541 43.478 0.00 0.00 0.00 3.82
2037 2221 3.498397 GGAAAGCGATCTTCTCAAACACA 59.502 43.478 0.00 0.00 0.00 3.72
2074 2258 6.814954 ATCCAATACCTGAGACTGTGTAAT 57.185 37.500 0.00 0.00 0.00 1.89
2077 2261 6.013725 TGTTAATCCAATACCTGAGACTGTGT 60.014 38.462 0.00 0.00 0.00 3.72
2081 2265 6.213600 AGTGTGTTAATCCAATACCTGAGACT 59.786 38.462 0.00 0.00 0.00 3.24
2087 2271 6.374417 ACTCAGTGTGTTAATCCAATACCT 57.626 37.500 0.00 0.00 0.00 3.08
2100 2284 2.366916 CCAGAAGGAGAACTCAGTGTGT 59.633 50.000 4.23 0.00 36.89 3.72
2101 2285 2.630098 TCCAGAAGGAGAACTCAGTGTG 59.370 50.000 4.23 0.00 39.61 3.82
2652 3027 3.795623 ATGCACTCCATTGAAAGCATC 57.204 42.857 0.00 0.00 36.76 3.91
2741 3123 2.629656 GGCATTTGCGCAGACACCT 61.630 57.895 11.31 0.00 43.26 4.00
2777 3159 1.379044 GGGTGCCACTCTCAATGGG 60.379 63.158 0.00 0.00 37.73 4.00
2886 3268 0.820891 CCTCATGCACCACTATGGCC 60.821 60.000 0.00 0.00 42.67 5.36
2890 3272 2.092753 CACCTTCCTCATGCACCACTAT 60.093 50.000 0.00 0.00 0.00 2.12
2901 3283 1.281867 CCTGGCAATACACCTTCCTCA 59.718 52.381 0.00 0.00 0.00 3.86
2917 3299 1.067582 GTTATCGTCCCGAGCCTGG 59.932 63.158 0.00 0.00 39.91 4.45
2919 3301 0.674534 GATGTTATCGTCCCGAGCCT 59.325 55.000 0.00 0.00 39.91 4.58
2960 3343 5.905331 ACAAGGTCTCATAATGATACCTCCA 59.095 40.000 9.67 0.00 46.97 3.86
2966 3349 8.424918 GGAGAGAAACAAGGTCTCATAATGATA 58.575 37.037 4.40 0.00 43.39 2.15
2974 3357 3.576118 CAGAGGAGAGAAACAAGGTCTCA 59.424 47.826 4.40 0.00 43.39 3.27
3005 3388 4.645136 CACAGGACAATACTCCACTAGCTA 59.355 45.833 0.00 0.00 31.94 3.32
3036 3420 4.264460 AGGAGTCTGTTCACATGAAGAC 57.736 45.455 0.00 5.83 34.27 3.01
3044 3428 3.963428 ACCATGTAGGAGTCTGTTCAC 57.037 47.619 0.00 0.00 41.22 3.18
3070 3454 1.893808 CTCCACACGTGCTTTGCCT 60.894 57.895 17.22 0.00 0.00 4.75
3082 3466 0.815213 GCACACAAGAGCACTCCACA 60.815 55.000 0.00 0.00 0.00 4.17
3120 3504 2.697751 CCCCAACACCAGATTGTGAAAA 59.302 45.455 0.00 0.00 39.57 2.29
3419 3816 3.953542 ATCCATACCCAGAAAGTTCCC 57.046 47.619 0.00 0.00 0.00 3.97
3420 3817 4.399303 CACAATCCATACCCAGAAAGTTCC 59.601 45.833 0.00 0.00 0.00 3.62
3428 3825 2.804572 CGAGAGCACAATCCATACCCAG 60.805 54.545 0.00 0.00 0.00 4.45
3473 3870 1.072331 AGATGAAGACACGCAGGGTTT 59.928 47.619 0.00 0.00 0.00 3.27
3479 3876 1.522668 CCCAAAGATGAAGACACGCA 58.477 50.000 0.00 0.00 0.00 5.24
3505 3902 6.010219 ACCAAATAATAGAAGCACCTGTTGT 58.990 36.000 0.00 0.00 0.00 3.32
3535 3932 6.412072 GTGCAAACTGAGCGAAAATATATGAC 59.588 38.462 0.00 0.00 33.85 3.06
3570 3970 4.441079 GCGCCAACCTATGTTAGTAAGAGA 60.441 45.833 0.00 0.00 32.09 3.10
3623 4026 0.034186 CCTATGCAAAGGTCCCAGCA 60.034 55.000 0.00 3.30 41.73 4.41
3714 4121 8.344831 GCATGTCACATATGCTGAATTAAAGTA 58.655 33.333 1.58 0.00 45.64 2.24
3745 4152 3.182887 TGAAACACCAATAGCCCCAAT 57.817 42.857 0.00 0.00 0.00 3.16
3749 4156 3.572255 TCAACTTGAAACACCAATAGCCC 59.428 43.478 0.00 0.00 0.00 5.19
3809 4216 1.710809 AGTAACCAGGTTCCAAGGCAT 59.289 47.619 8.57 0.00 0.00 4.40
3895 4321 9.063615 GTGGTATCCCGACTTTTCAAATATAAT 57.936 33.333 0.00 0.00 0.00 1.28
3896 4322 8.047911 TGTGGTATCCCGACTTTTCAAATATAA 58.952 33.333 0.00 0.00 0.00 0.98
3900 4326 4.658063 TGTGGTATCCCGACTTTTCAAAT 58.342 39.130 0.00 0.00 0.00 2.32
3914 4340 8.784043 AGTGACTAAATTGAAAGTTGTGGTATC 58.216 33.333 0.00 0.00 0.00 2.24
3950 4376 8.929487 ACAAACTTCAAGATATTTGGGGTTAAA 58.071 29.630 0.00 0.00 36.55 1.52
3990 4416 4.154375 TCGACGCAAGCCTATCTTATAGAG 59.846 45.833 0.00 0.00 45.62 2.43
3998 4424 1.324736 CTGTTTCGACGCAAGCCTATC 59.675 52.381 0.00 0.00 45.62 2.08
4007 4433 1.076332 ATTAGTGCCTGTTTCGACGC 58.924 50.000 0.00 0.00 0.00 5.19
4008 4434 6.578020 TTAATATTAGTGCCTGTTTCGACG 57.422 37.500 0.00 0.00 0.00 5.12
4009 4435 7.916552 ACATTAATATTAGTGCCTGTTTCGAC 58.083 34.615 15.70 0.00 0.00 4.20
4018 4444 9.726438 ACTTCCATCTACATTAATATTAGTGCC 57.274 33.333 15.70 0.00 0.00 5.01
4068 4494 8.433599 TGTAACCATCGGAAATATCTGGATTAA 58.566 33.333 0.30 0.00 32.43 1.40
4230 4656 7.562454 TGAAAGGTACTACCAAACTGAAAAG 57.438 36.000 8.01 0.00 41.95 2.27
4369 4796 7.962995 ATCTAAAGATCTTCCTATATCCGCA 57.037 36.000 8.78 0.00 0.00 5.69
4406 4833 7.873505 GCGAGTTATTCTTCATATAGGGTTCTT 59.126 37.037 0.00 0.00 0.00 2.52
4425 4852 6.257193 GCTAAAGCTAATTACCTTGCGAGTTA 59.743 38.462 0.00 0.00 38.21 2.24
4467 4898 6.732896 ATCCACGTCTCTGGTTAATTCTAT 57.267 37.500 0.00 0.00 32.50 1.98
4478 4909 8.969267 GTATAAATCTTTGTATCCACGTCTCTG 58.031 37.037 0.00 0.00 0.00 3.35
4479 4910 8.915036 AGTATAAATCTTTGTATCCACGTCTCT 58.085 33.333 0.00 0.00 0.00 3.10
4480 4911 9.182933 GAGTATAAATCTTTGTATCCACGTCTC 57.817 37.037 0.00 0.00 0.00 3.36
4496 4927 9.626045 CCCAAAAAGAAGTGTTGAGTATAAATC 57.374 33.333 0.00 0.00 0.00 2.17
4497 4928 8.585018 CCCCAAAAAGAAGTGTTGAGTATAAAT 58.415 33.333 0.00 0.00 0.00 1.40
4498 4929 7.014808 CCCCCAAAAAGAAGTGTTGAGTATAAA 59.985 37.037 0.00 0.00 0.00 1.40
4499 4930 6.492087 CCCCCAAAAAGAAGTGTTGAGTATAA 59.508 38.462 0.00 0.00 0.00 0.98
4500 4931 6.007703 CCCCCAAAAAGAAGTGTTGAGTATA 58.992 40.000 0.00 0.00 0.00 1.47
4501 4932 4.832823 CCCCCAAAAAGAAGTGTTGAGTAT 59.167 41.667 0.00 0.00 0.00 2.12
4502 4933 4.211920 CCCCCAAAAAGAAGTGTTGAGTA 58.788 43.478 0.00 0.00 0.00 2.59
4503 4934 3.031013 CCCCCAAAAAGAAGTGTTGAGT 58.969 45.455 0.00 0.00 0.00 3.41
4504 4935 3.733443 CCCCCAAAAAGAAGTGTTGAG 57.267 47.619 0.00 0.00 0.00 3.02
4537 4968 1.952367 GCCACCACCTCTCAAATGGAG 60.952 57.143 0.00 0.00 45.49 3.86
4538 4969 0.038166 GCCACCACCTCTCAAATGGA 59.962 55.000 0.00 0.00 36.94 3.41
4539 4970 0.967380 GGCCACCACCTCTCAAATGG 60.967 60.000 0.00 0.00 39.57 3.16
4540 4971 0.038744 AGGCCACCACCTCTCAAATG 59.961 55.000 5.01 0.00 33.62 2.32
4541 4972 0.038744 CAGGCCACCACCTCTCAAAT 59.961 55.000 5.01 0.00 38.26 2.32
4542 4973 1.059584 TCAGGCCACCACCTCTCAAA 61.060 55.000 5.01 0.00 38.26 2.69
4543 4974 1.461268 TCAGGCCACCACCTCTCAA 60.461 57.895 5.01 0.00 38.26 3.02
4544 4975 2.204034 TCAGGCCACCACCTCTCA 59.796 61.111 5.01 0.00 38.26 3.27
4545 4976 1.768684 TTGTCAGGCCACCACCTCTC 61.769 60.000 5.01 0.00 38.26 3.20
4546 4977 1.352622 TTTGTCAGGCCACCACCTCT 61.353 55.000 5.01 0.00 38.26 3.69
4547 4978 0.890996 CTTTGTCAGGCCACCACCTC 60.891 60.000 5.01 0.00 38.26 3.85
4548 4979 1.151450 CTTTGTCAGGCCACCACCT 59.849 57.895 5.01 0.00 42.30 4.00
4549 4980 2.564721 GCTTTGTCAGGCCACCACC 61.565 63.158 5.01 0.00 0.00 4.61
4550 4981 1.827789 TGCTTTGTCAGGCCACCAC 60.828 57.895 5.01 0.00 0.00 4.16
4551 4982 1.827789 GTGCTTTGTCAGGCCACCA 60.828 57.895 5.01 0.00 0.00 4.17
4552 4983 2.908073 CGTGCTTTGTCAGGCCACC 61.908 63.158 5.01 0.00 0.00 4.61
4553 4984 1.891919 TCGTGCTTTGTCAGGCCAC 60.892 57.895 5.01 0.00 0.00 5.01
4554 4985 1.891919 GTCGTGCTTTGTCAGGCCA 60.892 57.895 5.01 0.00 0.00 5.36
4555 4986 1.237285 ATGTCGTGCTTTGTCAGGCC 61.237 55.000 0.00 0.00 0.00 5.19
4556 4987 0.110056 CATGTCGTGCTTTGTCAGGC 60.110 55.000 0.00 0.00 0.00 4.85
4557 4988 1.511850 TCATGTCGTGCTTTGTCAGG 58.488 50.000 0.00 0.00 0.00 3.86
4570 5188 4.744795 AGGTCTGACTTGGTATCATGTC 57.255 45.455 13.70 13.70 43.92 3.06
4574 5192 6.897966 AGAGAATAAGGTCTGACTTGGTATCA 59.102 38.462 7.85 0.00 32.02 2.15
4587 5205 8.204836 TGTTTTAGGCTCATAGAGAATAAGGTC 58.795 37.037 0.00 0.00 0.00 3.85
4593 5211 9.638176 AATTGATGTTTTAGGCTCATAGAGAAT 57.362 29.630 0.00 0.00 0.00 2.40
4600 5218 8.206189 CCCAAATAATTGATGTTTTAGGCTCAT 58.794 33.333 0.00 0.00 38.94 2.90
4647 5265 5.034554 ACATTGATGTTCTTTGTACAGCG 57.965 39.130 0.00 0.00 37.90 5.18
4648 5266 6.246420 AGACATTGATGTTCTTTGTACAGC 57.754 37.500 0.00 0.00 41.95 4.40
4679 5297 1.471287 CGAGATAGACCCGTGAACACA 59.529 52.381 5.80 0.00 0.00 3.72
4688 5306 1.819903 GCATCTACCCGAGATAGACCC 59.180 57.143 0.00 0.00 43.52 4.46
4712 5330 1.288188 TGCCATGTCTTCATCCTCCA 58.712 50.000 0.00 0.00 31.15 3.86
4726 5346 7.944729 ACAAAGTGAGTAGAAATAATGCCAT 57.055 32.000 0.00 0.00 0.00 4.40
4757 5377 3.910627 AGTGATGAAGTTTGGGTAGGACT 59.089 43.478 0.00 0.00 0.00 3.85
4765 5385 8.771766 CATGTATCAGATAGTGATGAAGTTTGG 58.228 37.037 0.00 0.00 46.09 3.28
4810 5431 2.917701 TGGCACAATAATGTCGCTTG 57.082 45.000 5.66 0.00 37.82 4.01
4822 5443 6.005198 TGATCATATGATAGCAATGGCACAA 58.995 36.000 18.19 0.00 36.96 3.33
4827 5448 5.566623 GCGTTGATCATATGATAGCAATGG 58.433 41.667 25.70 18.97 34.37 3.16
4901 5522 5.109210 CAACCTCGATTGCATCTAACTACA 58.891 41.667 0.00 0.00 0.00 2.74
4918 5539 3.570125 CACCTTCTCCTTTTTCCAACCTC 59.430 47.826 0.00 0.00 0.00 3.85
4923 5544 4.788925 TCTTCACCTTCTCCTTTTTCCA 57.211 40.909 0.00 0.00 0.00 3.53
4939 5560 6.253946 AGACCTTCTTCTTTTCCTTCTTCA 57.746 37.500 0.00 0.00 0.00 3.02
4986 5607 1.580059 GACACCCCCTCCTTATGTGA 58.420 55.000 0.00 0.00 0.00 3.58
4987 5608 0.546598 GGACACCCCCTCCTTATGTG 59.453 60.000 0.00 0.00 0.00 3.21
5000 5623 2.593026 TCTTTTCCCATGTTGGACACC 58.407 47.619 0.00 0.00 40.96 4.16
5036 5659 4.280436 TCTTCTTTAGATGTTGCCGGAA 57.720 40.909 5.05 0.00 0.00 4.30
5053 5676 6.825721 AGTAGGTCATCACCAAAATCATCTTC 59.174 38.462 0.00 0.00 46.68 2.87
5055 5678 6.319048 AGTAGGTCATCACCAAAATCATCT 57.681 37.500 0.00 0.00 46.68 2.90
5056 5679 7.012421 GGTAAGTAGGTCATCACCAAAATCATC 59.988 40.741 0.00 0.00 46.68 2.92
5058 5681 6.177610 GGTAAGTAGGTCATCACCAAAATCA 58.822 40.000 0.00 0.00 46.68 2.57
5081 5704 0.823460 GGACTGCTCTCTTGAGAGGG 59.177 60.000 23.89 13.25 45.37 4.30
5094 5717 0.955428 TCCACGCTTCAATGGACTGC 60.955 55.000 0.00 0.00 40.17 4.40
5122 5745 5.050227 GCATCACATGATAAGAGCTCACTTC 60.050 44.000 17.77 9.49 32.63 3.01
5144 5767 4.523083 AGTGAACCACTCTTTGTTAAGCA 58.477 39.130 0.00 0.00 41.21 3.91
5206 5829 3.364441 GCACCAAGGCACATCGCA 61.364 61.111 0.00 0.00 45.17 5.10
5234 5857 7.326454 TGACTTTGTTCTTGATATCTCTCCAG 58.674 38.462 3.98 0.00 0.00 3.86
5323 5946 7.412563 CATCATAATGAAGTTTGCCAAGCAAAG 60.413 37.037 14.60 1.18 45.45 2.77
5344 5967 5.483937 TCCGCCTTGTAGATATAACCATCAT 59.516 40.000 0.00 0.00 0.00 2.45
5405 6028 6.447084 TCCTCTTTCCCTTTATCACAAGGTAT 59.553 38.462 0.00 0.00 41.84 2.73
5454 6077 4.141251 TGGTTTCTCCTTAGCTCAACCTTT 60.141 41.667 0.00 0.00 35.64 3.11
5460 6083 3.327757 ACACATGGTTTCTCCTTAGCTCA 59.672 43.478 0.00 0.00 37.07 4.26
5491 6114 4.623167 CAGACTTGGTAAACTCGACTGATG 59.377 45.833 0.00 0.00 0.00 3.07
5513 6136 1.276421 GCTGCTAAGTTCTCCACCTCA 59.724 52.381 0.00 0.00 0.00 3.86
5539 6162 3.551887 TTGTTCGCTCGCTCGCTCA 62.552 57.895 0.00 0.00 0.00 4.26
5544 6167 0.800300 CCTCTCTTGTTCGCTCGCTC 60.800 60.000 0.00 0.00 0.00 5.03
5550 6173 0.034896 TTGGGTCCTCTCTTGTTCGC 59.965 55.000 0.00 0.00 0.00 4.70
5552 6175 2.635427 AGACTTGGGTCCTCTCTTGTTC 59.365 50.000 0.00 0.00 43.05 3.18
5599 6222 5.524646 CCTTAACCGTCTTGAACTTGTTGTA 59.475 40.000 0.00 0.00 0.00 2.41
5631 6254 1.071542 TCTTGATTGCCGAGACCAACA 59.928 47.619 0.00 0.00 30.35 3.33
5641 6464 7.983484 AGGACAAATATTTTCATCTTGATTGCC 59.017 33.333 0.00 0.00 0.00 4.52
5659 6482 3.511934 AGCTAGAGACGACAAGGACAAAT 59.488 43.478 0.00 0.00 0.00 2.32
5664 6487 0.811915 GCAGCTAGAGACGACAAGGA 59.188 55.000 0.00 0.00 0.00 3.36
5670 6493 1.403323 CTCATGTGCAGCTAGAGACGA 59.597 52.381 0.00 0.00 0.00 4.20
5705 6529 5.652014 ACTTCTTCCACAACAATGTCTTCAA 59.348 36.000 0.00 0.00 37.82 2.69
5711 6535 3.560068 GTCGACTTCTTCCACAACAATGT 59.440 43.478 8.70 0.00 41.61 2.71
5798 6622 8.086851 ACAATGCCAAAAATATCAACAAGTTC 57.913 30.769 0.00 0.00 0.00 3.01
5810 6634 4.205587 TGCAAGGAAACAATGCCAAAAAT 58.794 34.783 0.00 0.00 42.68 1.82
5825 6649 9.859427 CATCTTTTATTAAAGTTGATGCAAGGA 57.141 29.630 8.83 0.00 40.86 3.36
5911 6736 9.057089 CCTAACCTTCCATATACATGAAAGTTC 57.943 37.037 0.00 0.00 33.67 3.01
5918 6743 7.773224 TCAAACACCTAACCTTCCATATACATG 59.227 37.037 0.00 0.00 0.00 3.21
5941 6766 4.001652 TGGTTTACACGTGTTTGACTCAA 58.998 39.130 28.55 10.26 0.00 3.02
5942 6767 3.597255 TGGTTTACACGTGTTTGACTCA 58.403 40.909 28.55 17.44 0.00 3.41
5943 6768 4.523813 CATGGTTTACACGTGTTTGACTC 58.476 43.478 28.55 15.45 0.00 3.36
5944 6769 3.242936 GCATGGTTTACACGTGTTTGACT 60.243 43.478 28.55 2.39 0.00 3.41
5945 6770 3.040099 GCATGGTTTACACGTGTTTGAC 58.960 45.455 28.55 20.81 0.00 3.18
5946 6771 2.033550 GGCATGGTTTACACGTGTTTGA 59.966 45.455 28.55 10.73 0.00 2.69
5947 6772 2.034053 AGGCATGGTTTACACGTGTTTG 59.966 45.455 28.55 15.06 0.00 2.93
5948 6773 2.303175 AGGCATGGTTTACACGTGTTT 58.697 42.857 28.55 4.99 0.00 2.83
5949 6774 1.975660 AGGCATGGTTTACACGTGTT 58.024 45.000 28.55 11.17 0.00 3.32
5950 6775 2.843401 TAGGCATGGTTTACACGTGT 57.157 45.000 26.52 26.52 0.00 4.49
5951 6776 3.266636 TGATAGGCATGGTTTACACGTG 58.733 45.455 15.48 15.48 0.00 4.49
5952 6777 3.620427 TGATAGGCATGGTTTACACGT 57.380 42.857 0.00 0.00 0.00 4.49
5953 6778 5.053811 TGTATGATAGGCATGGTTTACACG 58.946 41.667 0.00 0.00 37.87 4.49
5954 6779 6.935741 TTGTATGATAGGCATGGTTTACAC 57.064 37.500 0.00 0.00 37.87 2.90
5955 6780 7.116075 ACTTTGTATGATAGGCATGGTTTACA 58.884 34.615 0.00 0.00 37.87 2.41
5956 6781 7.282224 TGACTTTGTATGATAGGCATGGTTTAC 59.718 37.037 0.00 0.00 37.87 2.01
5957 6782 7.342581 TGACTTTGTATGATAGGCATGGTTTA 58.657 34.615 0.00 0.00 37.87 2.01
5975 6800 2.938451 TGCTTATCCTGCGATGACTTTG 59.062 45.455 0.00 0.00 0.00 2.77
6017 6842 2.338500 GTGATCTTGTGTCTTCCGGAC 58.662 52.381 1.83 0.00 44.70 4.79
6041 6866 1.812507 GGGTGTCCGTATTGTCGCC 60.813 63.158 0.00 0.00 0.00 5.54
6082 6907 2.242769 TATCGATCATCACGCTACGC 57.757 50.000 0.00 0.00 0.00 4.42
6088 6913 2.856398 AGACGCATATCGATCATCACG 58.144 47.619 0.00 2.87 41.67 4.35
6109 6934 4.220724 ACAATAAGTCTACGGAGGCCATA 58.779 43.478 5.01 0.00 0.00 2.74
6138 6963 7.631007 TCCCATGTACTAGATCGACATACTAT 58.369 38.462 0.00 0.00 32.58 2.12
6141 6966 5.392165 GCTCCCATGTACTAGATCGACATAC 60.392 48.000 0.00 0.67 32.58 2.39
6166 6991 2.711711 CCTGAGCATGATTTCGGGG 58.288 57.895 0.00 0.00 36.41 5.73
6171 6996 6.371278 ACATTAGATTCCCTGAGCATGATTT 58.629 36.000 0.00 0.00 0.00 2.17
6216 7041 8.399425 TGAAGAAAGTAGATGAAGAGACGATAC 58.601 37.037 0.00 0.00 0.00 2.24
6273 7098 8.669946 TCACTGTTTAACATGATTAGTTGACA 57.330 30.769 0.00 0.00 0.00 3.58
6328 7153 8.407064 GCAGCATTCGTATATTCCTAGTACTAT 58.593 37.037 2.33 0.00 0.00 2.12
6329 7154 7.392393 TGCAGCATTCGTATATTCCTAGTACTA 59.608 37.037 1.89 1.89 0.00 1.82
6335 7160 6.934083 TCAAATGCAGCATTCGTATATTCCTA 59.066 34.615 21.10 0.00 32.43 2.94
6337 7162 5.853282 GTCAAATGCAGCATTCGTATATTCC 59.147 40.000 21.10 0.00 32.43 3.01
6346 7171 3.581024 TTCAGGTCAAATGCAGCATTC 57.419 42.857 21.10 8.79 32.43 2.67
6351 7176 2.821378 TCCACATTCAGGTCAAATGCAG 59.179 45.455 0.00 0.00 37.58 4.41
6373 7198 4.398988 GCATCACTCCACCAAAATCATGTA 59.601 41.667 0.00 0.00 0.00 2.29
6386 7211 1.421268 ACTTCAACCTGCATCACTCCA 59.579 47.619 0.00 0.00 0.00 3.86
6432 7257 3.348236 CAGCTTGACCAGGTGTGC 58.652 61.111 0.00 0.00 44.77 4.57
6585 7410 6.207417 ACATGCAACAAAGTGCTACTAGAAAT 59.793 34.615 0.00 0.00 45.17 2.17
6596 7421 9.838975 TCTTATTTGTATACATGCAACAAAGTG 57.161 29.630 16.31 10.22 43.92 3.16
6597 7422 9.840427 GTCTTATTTGTATACATGCAACAAAGT 57.160 29.630 16.31 9.17 43.92 2.66
6687 7516 0.107017 ACCACATGCTATGGGTCAGC 60.107 55.000 5.87 0.00 41.97 4.26
6689 7518 3.265737 AGTTAACCACATGCTATGGGTCA 59.734 43.478 0.88 0.00 41.97 4.02
6715 7551 4.952335 CAGTTTCCCCATTCATAGAAGCTT 59.048 41.667 0.00 0.00 28.76 3.74
6723 7559 1.620524 CCCTGCAGTTTCCCCATTCAT 60.621 52.381 13.81 0.00 0.00 2.57
6724 7560 0.251742 CCCTGCAGTTTCCCCATTCA 60.252 55.000 13.81 0.00 0.00 2.57
6749 7585 1.135689 GTTGACCATGACAACGATGCC 60.136 52.381 15.76 0.00 38.23 4.40
6755 7591 3.380004 TCAACCTTGTTGACCATGACAAC 59.620 43.478 20.67 20.67 45.07 3.32
6761 7597 4.262164 GCAATCTTCAACCTTGTTGACCAT 60.262 41.667 9.05 2.39 0.00 3.55
6774 7610 2.494471 CAGCTCCAATGGCAATCTTCAA 59.506 45.455 0.00 0.00 0.00 2.69
7105 7948 2.427753 GGCCCATCCTTCGCTAGG 59.572 66.667 0.00 0.00 46.27 3.02
7111 7954 4.547367 CCGTCGGGCCCATCCTTC 62.547 72.222 24.92 3.69 34.39 3.46
7215 8058 7.555965 ACTTTGGACAACTTCTGCTTAATTTT 58.444 30.769 0.00 0.00 0.00 1.82
7389 8234 0.904865 ATGAGGCTCTGTTCCCGTGA 60.905 55.000 16.72 0.00 0.00 4.35
7430 8275 3.147595 CGGGGCGAGTCATGGAGA 61.148 66.667 0.00 0.00 0.00 3.71
7559 8404 4.148825 ACGGCGGACATCTGAGGC 62.149 66.667 13.24 0.00 0.00 4.70
7617 8462 2.483877 TGTACACGAACGGTTCTACGAT 59.516 45.455 17.94 3.96 37.61 3.73
7619 8464 1.971962 GTGTACACGAACGGTTCTACG 59.028 52.381 17.94 8.85 40.31 3.51
7647 8492 5.185056 TCAGATGTAGTCATTTGTTCTCCGA 59.815 40.000 0.00 0.00 37.42 4.55
7667 8512 5.514274 TGCTATTACACGACATCATCAGA 57.486 39.130 0.00 0.00 0.00 3.27
7771 8616 0.514691 CTGCTTGACTCGAGGCAAAC 59.485 55.000 32.28 28.28 34.21 2.93
7778 8623 2.126307 GCGCTCTGCTTGACTCGA 60.126 61.111 0.00 0.00 41.73 4.04
7779 8624 3.540014 CGCGCTCTGCTTGACTCG 61.540 66.667 5.56 0.00 43.27 4.18
7913 11119 9.615295 TTTAACTGATTTATGTAAAGCGTTTCC 57.385 29.630 12.40 0.00 34.54 3.13
8240 11459 4.967575 CAGTTTTTAACACATGGTCGACAC 59.032 41.667 18.91 7.49 0.00 3.67
8244 11463 8.073768 AGATTAACAGTTTTTAACACATGGTCG 58.926 33.333 0.00 0.00 0.00 4.79
8397 11719 9.295825 TCAATACATGGAACTTTTTCTACACAT 57.704 29.630 0.00 0.00 31.71 3.21
8437 11761 9.988350 AATGCTTGATTAACGTTCTACAAATAG 57.012 29.630 2.82 0.00 0.00 1.73
8586 12010 4.829064 TTTCTCTCGGGTTTTCATTGTG 57.171 40.909 0.00 0.00 0.00 3.33
8590 12014 7.761038 ATTTAGTTTTCTCTCGGGTTTTCAT 57.239 32.000 0.00 0.00 0.00 2.57
8593 12017 9.740239 GTTTTATTTAGTTTTCTCTCGGGTTTT 57.260 29.630 0.00 0.00 0.00 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.