Multiple sequence alignment - TraesCS4B01G229600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G229600 chr4B 100.000 7447 0 0 1 7447 480600317 480592871 0.000000e+00 13753.0
1 TraesCS4B01G229600 chr4B 94.937 79 1 3 1757 1834 480598490 480598414 3.650000e-23 121.0
2 TraesCS4B01G229600 chr4B 94.937 79 1 3 1828 1904 480598561 480598484 3.650000e-23 121.0
3 TraesCS4B01G229600 chr4D 96.234 1593 47 8 2279 3862 390605335 390603747 0.000000e+00 2597.0
4 TraesCS4B01G229600 chr4D 90.502 1674 79 33 169 1778 390607388 390605731 0.000000e+00 2137.0
5 TraesCS4B01G229600 chr4D 96.496 1227 41 2 5582 6808 390601866 390600642 0.000000e+00 2026.0
6 TraesCS4B01G229600 chr4D 96.742 706 17 2 4878 5578 390603075 390602371 0.000000e+00 1171.0
7 TraesCS4B01G229600 chr4D 94.745 647 16 5 4196 4841 390603699 390603070 0.000000e+00 990.0
8 TraesCS4B01G229600 chr4D 84.828 580 31 25 6878 7447 390600628 390600096 1.420000e-146 531.0
9 TraesCS4B01G229600 chr4D 91.071 392 13 8 1868 2257 390605689 390605318 1.850000e-140 510.0
10 TraesCS4B01G229600 chr4D 100.000 121 0 0 1 121 390607526 390607406 2.700000e-54 224.0
11 TraesCS4B01G229600 chr4D 95.652 69 3 0 4116 4184 390603753 390603685 2.200000e-20 111.0
12 TraesCS4B01G229600 chr4A 96.154 1404 42 7 4142 5538 72300006 72298608 0.000000e+00 2283.0
13 TraesCS4B01G229600 chr4A 94.955 1229 51 6 5584 6808 72298131 72296910 0.000000e+00 1916.0
14 TraesCS4B01G229600 chr4A 90.433 1223 60 20 635 1835 72303215 72302028 0.000000e+00 1557.0
15 TraesCS4B01G229600 chr4A 93.076 751 43 4 3079 3821 72300745 72299996 0.000000e+00 1090.0
16 TraesCS4B01G229600 chr4A 88.905 685 43 17 2397 3078 72301494 72300840 0.000000e+00 813.0
17 TraesCS4B01G229600 chr4A 86.192 717 39 26 166 851 72303686 72302999 0.000000e+00 721.0
18 TraesCS4B01G229600 chr4A 94.404 411 15 7 1847 2255 72302083 72301679 6.340000e-175 625.0
19 TraesCS4B01G229600 chr4A 90.000 370 19 6 7082 7447 72296767 72296412 5.260000e-126 462.0
20 TraesCS4B01G229600 chr4A 92.414 145 6 1 8 147 72303814 72303670 1.270000e-47 202.0
21 TraesCS4B01G229600 chr4A 94.215 121 5 2 2279 2399 72301694 72301576 4.590000e-42 183.0
22 TraesCS4B01G229600 chr4A 83.333 108 11 6 2295 2399 72302062 72301959 7.960000e-15 93.5
23 TraesCS4B01G229600 chr2A 95.636 275 10 2 3852 4125 678350621 678350894 2.470000e-119 440.0
24 TraesCS4B01G229600 chr2A 94.909 275 12 2 3852 4125 498200614 498200887 5.340000e-116 429.0
25 TraesCS4B01G229600 chr7A 95.238 273 11 2 3847 4118 506291312 506291583 1.480000e-116 431.0
26 TraesCS4B01G229600 chr7A 94.545 275 13 2 3852 4125 308118855 308119128 2.480000e-114 424.0
27 TraesCS4B01G229600 chr7A 94.834 271 12 2 3849 4118 430840924 430841193 8.930000e-114 422.0
28 TraesCS4B01G229600 chr7A 94.182 275 14 2 3852 4125 443763916 443763643 1.160000e-112 418.0
29 TraesCS4B01G229600 chr3A 94.545 275 13 2 3852 4125 234263112 234262839 2.480000e-114 424.0
30 TraesCS4B01G229600 chr3A 95.785 261 11 0 3858 4118 522717637 522717897 8.930000e-114 422.0
31 TraesCS4B01G229600 chr2B 94.834 271 12 2 3857 4127 173889988 173889720 8.930000e-114 422.0
32 TraesCS4B01G229600 chr3B 100.000 28 0 0 2223 2250 13750001 13750028 1.400000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G229600 chr4B 480592871 480600317 7446 True 4665.000000 13753 96.624667 1 7447 3 chr4B.!!$R1 7446
1 TraesCS4B01G229600 chr4D 390600096 390607526 7430 True 1144.111111 2597 94.030000 1 7447 9 chr4D.!!$R1 7446
2 TraesCS4B01G229600 chr4A 72296412 72303814 7402 True 904.136364 2283 91.280091 8 7447 11 chr4A.!!$R1 7439

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
576 622 0.107643 TCCACATTTCACTGCCACGA 59.892 50.000 0.0 0.0 0.00 4.35 F
955 1022 0.464452 AAAACCCTAGATCTCCCGCG 59.536 55.000 0.0 0.0 0.00 6.46 F
2523 2726 0.324645 GGGCATGACTCCACCCAAAT 60.325 55.000 0.0 0.0 42.33 2.32 F
2834 3039 1.197910 GCTAACTCGTCACGCCATAC 58.802 55.000 0.0 0.0 0.00 2.39 F
3584 3891 2.301583 TGTAAGTAGTGTGCTGCCATCA 59.698 45.455 0.0 0.0 0.00 3.07 F
4534 4844 2.649816 AGGGCTCAAGGTTTATGAAGGT 59.350 45.455 0.0 0.0 0.00 3.50 F
5924 6933 1.294659 CTCCAAGTCCGCAGCACTTC 61.295 60.000 0.0 0.0 28.92 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1521 1607 0.734253 CAGACGACACTAGCAGGTGC 60.734 60.000 8.63 0.0 40.52 5.01 R
2726 2931 0.249322 ATAATCGGACGACTTGGGCG 60.249 55.000 0.00 0.0 0.00 6.13 R
3568 3875 0.379669 GCATGATGGCAGCACACTAC 59.620 55.000 7.97 0.0 0.00 2.73 R
4600 4910 0.682209 TACCTTCGAACCCTCCTCGG 60.682 60.000 0.00 0.0 36.93 4.63 R
4672 4992 2.100087 ACACACTACACACACACGATCA 59.900 45.455 0.00 0.0 0.00 2.92 R
6035 7044 0.034186 CTGGGAAAGGTATGGCTGCA 60.034 55.000 0.50 0.0 0.00 4.41 R
6776 7789 0.035317 TCACAGGCTTGCAACTCGAT 59.965 50.000 0.00 0.0 0.00 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 130 2.267961 GTGGGAGCCAACGTAGGG 59.732 66.667 1.91 1.91 34.18 3.53
130 136 1.686115 GGAGCCAACGTAGGGGTAGTA 60.686 57.143 10.47 0.00 35.99 1.82
131 137 2.314246 GAGCCAACGTAGGGGTAGTAT 58.686 52.381 10.47 0.00 35.99 2.12
132 138 3.490348 GAGCCAACGTAGGGGTAGTATA 58.510 50.000 10.47 0.00 35.99 1.47
133 139 3.225940 AGCCAACGTAGGGGTAGTATAC 58.774 50.000 8.93 0.00 42.04 1.47
134 140 3.117360 AGCCAACGTAGGGGTAGTATACT 60.117 47.826 10.87 10.87 42.51 2.12
135 141 4.104738 AGCCAACGTAGGGGTAGTATACTA 59.895 45.833 8.59 8.59 42.51 1.82
136 142 4.216472 GCCAACGTAGGGGTAGTATACTAC 59.784 50.000 27.97 27.97 46.09 2.73
151 157 7.282332 AGTATACTACAATTACGAACTCCCC 57.718 40.000 2.75 0.00 0.00 4.81
152 158 3.515330 ACTACAATTACGAACTCCCCG 57.485 47.619 0.00 0.00 0.00 5.73
153 159 2.199236 CTACAATTACGAACTCCCCGC 58.801 52.381 0.00 0.00 0.00 6.13
154 160 0.322322 ACAATTACGAACTCCCCGCA 59.678 50.000 0.00 0.00 0.00 5.69
155 161 1.270947 ACAATTACGAACTCCCCGCAA 60.271 47.619 0.00 0.00 0.00 4.85
156 162 1.807742 CAATTACGAACTCCCCGCAAA 59.192 47.619 0.00 0.00 0.00 3.68
157 163 2.188062 ATTACGAACTCCCCGCAAAA 57.812 45.000 0.00 0.00 0.00 2.44
158 164 1.964552 TTACGAACTCCCCGCAAAAA 58.035 45.000 0.00 0.00 0.00 1.94
186 192 8.746922 AAAAATACTACGATTACGAACACTCA 57.253 30.769 0.00 0.00 42.66 3.41
506 540 6.864360 AAAATTAGCACCGTTGTTACTACA 57.136 33.333 0.00 0.00 0.00 2.74
508 542 7.443259 AAATTAGCACCGTTGTTACTACAAT 57.557 32.000 0.00 0.00 45.41 2.71
509 543 5.849357 TTAGCACCGTTGTTACTACAATG 57.151 39.130 0.00 0.00 45.41 2.82
560 606 1.155424 GCACGAGTGTTTCCGTTCCA 61.155 55.000 5.07 0.00 36.83 3.53
562 608 0.176219 ACGAGTGTTTCCGTTCCACA 59.824 50.000 0.00 0.00 35.21 4.17
575 621 0.950836 TTCCACATTTCACTGCCACG 59.049 50.000 0.00 0.00 0.00 4.94
576 622 0.107643 TCCACATTTCACTGCCACGA 59.892 50.000 0.00 0.00 0.00 4.35
610 657 3.611674 AAAGCCCGCAAAACCCCG 61.612 61.111 0.00 0.00 0.00 5.73
835 902 3.465403 CACTGCCGCTAGCCTCCT 61.465 66.667 9.66 0.00 42.71 3.69
836 903 3.151022 ACTGCCGCTAGCCTCCTC 61.151 66.667 9.66 0.00 42.71 3.71
837 904 3.922640 CTGCCGCTAGCCTCCTCC 61.923 72.222 9.66 0.00 42.71 4.30
838 905 4.465446 TGCCGCTAGCCTCCTCCT 62.465 66.667 9.66 0.00 42.71 3.69
839 906 3.611674 GCCGCTAGCCTCCTCCTC 61.612 72.222 9.66 0.00 34.35 3.71
840 907 2.915137 CCGCTAGCCTCCTCCTCC 60.915 72.222 9.66 0.00 0.00 4.30
841 908 2.197324 CGCTAGCCTCCTCCTCCT 59.803 66.667 9.66 0.00 0.00 3.69
842 909 1.901464 CGCTAGCCTCCTCCTCCTC 60.901 68.421 9.66 0.00 0.00 3.71
843 910 1.533033 GCTAGCCTCCTCCTCCTCC 60.533 68.421 2.29 0.00 0.00 4.30
844 911 1.155155 CTAGCCTCCTCCTCCTCCC 59.845 68.421 0.00 0.00 0.00 4.30
848 915 2.197324 CTCCTCCTCCTCCCTCCG 59.803 72.222 0.00 0.00 0.00 4.63
912 979 4.995058 ACAGGGGGAGGGGCGAAA 62.995 66.667 0.00 0.00 0.00 3.46
913 980 3.657350 CAGGGGGAGGGGCGAAAA 61.657 66.667 0.00 0.00 0.00 2.29
914 981 2.861974 AGGGGGAGGGGCGAAAAA 60.862 61.111 0.00 0.00 0.00 1.94
915 982 2.246126 AGGGGGAGGGGCGAAAAAT 61.246 57.895 0.00 0.00 0.00 1.82
955 1022 0.464452 AAAACCCTAGATCTCCCGCG 59.536 55.000 0.00 0.00 0.00 6.46
1521 1607 4.875544 TCGTTTCTCTCTTTGTTTGGTG 57.124 40.909 0.00 0.00 0.00 4.17
1580 1666 4.201676 CGCCTTTTCTCGCTTTTTGTTTTT 60.202 37.500 0.00 0.00 0.00 1.94
1695 1783 8.371699 GGTATGCATAGAGTTATCTTCCTCTTT 58.628 37.037 6.67 0.00 38.86 2.52
1749 1837 0.725117 GTCCCGATTGGTAAAGTGCG 59.275 55.000 0.00 0.00 34.77 5.34
1759 1849 2.028748 TGGTAAAGTGCGGTTACTCCTC 60.029 50.000 4.59 0.00 32.96 3.71
1761 1851 3.306571 GGTAAAGTGCGGTTACTCCTCTT 60.307 47.826 4.59 0.00 32.96 2.85
1763 1853 3.487120 AAGTGCGGTTACTCCTCTTTT 57.513 42.857 0.00 0.00 0.00 2.27
1821 1938 9.853177 AATAAGTATTCATCAGGTCCTAAAAGG 57.147 33.333 0.00 0.00 36.46 3.11
1822 1939 6.253946 AGTATTCATCAGGTCCTAAAAGGG 57.746 41.667 0.00 0.00 35.59 3.95
1823 1940 5.731678 AGTATTCATCAGGTCCTAAAAGGGT 59.268 40.000 0.00 0.00 35.59 4.34
1824 1941 6.906901 AGTATTCATCAGGTCCTAAAAGGGTA 59.093 38.462 0.00 0.00 35.59 3.69
1825 1942 6.652205 ATTCATCAGGTCCTAAAAGGGTAA 57.348 37.500 0.00 0.00 35.59 2.85
1826 1943 5.693769 TCATCAGGTCCTAAAAGGGTAAG 57.306 43.478 0.00 0.00 35.59 2.34
1827 1944 3.994931 TCAGGTCCTAAAAGGGTAAGC 57.005 47.619 0.00 0.00 35.59 3.09
1828 1945 2.574824 TCAGGTCCTAAAAGGGTAAGCC 59.425 50.000 0.00 0.00 35.59 4.35
1829 1946 2.576648 CAGGTCCTAAAAGGGTAAGCCT 59.423 50.000 0.00 0.00 35.59 4.58
1830 1947 2.844966 AGGTCCTAAAAGGGTAAGCCTC 59.155 50.000 0.00 0.00 35.59 4.70
1831 1948 2.844966 GGTCCTAAAAGGGTAAGCCTCT 59.155 50.000 0.00 0.00 35.59 3.69
1832 1949 3.266254 GGTCCTAAAAGGGTAAGCCTCTT 59.734 47.826 0.00 0.00 35.59 2.85
1833 1950 4.263816 GGTCCTAAAAGGGTAAGCCTCTTT 60.264 45.833 0.00 0.00 37.07 2.52
1834 1951 5.322754 GTCCTAAAAGGGTAAGCCTCTTTT 58.677 41.667 5.38 5.38 42.44 2.27
1835 1952 5.773680 GTCCTAAAAGGGTAAGCCTCTTTTT 59.226 40.000 5.35 8.56 41.31 1.94
1906 2023 2.812358 AAAAGGGTAAGCCTTTTGCG 57.188 45.000 14.33 0.00 42.32 4.85
1974 2093 6.958192 TCCTAACCTACTGGATAAAGTTGTCT 59.042 38.462 0.00 0.00 37.04 3.41
2050 2169 2.053627 CAATTTGAGTTGCTTCACGCC 58.946 47.619 0.00 0.00 38.05 5.68
2142 2261 6.035112 GCTATTACTTACGGCAGAAGATATGC 59.965 42.308 2.63 0.00 43.09 3.14
2161 2280 1.209127 CGCAAACTTTCGGCGGAAT 59.791 52.632 7.21 0.00 46.46 3.01
2189 2308 1.936436 GCATGATTCCCGCACAAGCA 61.936 55.000 0.00 0.00 42.27 3.91
2272 2391 6.793505 ACTTATTAAATGACGAGAGGACCT 57.206 37.500 0.00 0.00 0.00 3.85
2273 2392 6.574350 ACTTATTAAATGACGAGAGGACCTG 58.426 40.000 0.00 0.00 0.00 4.00
2274 2393 6.380274 ACTTATTAAATGACGAGAGGACCTGA 59.620 38.462 0.00 0.00 0.00 3.86
2275 2394 5.677319 ATTAAATGACGAGAGGACCTGAA 57.323 39.130 0.00 0.00 0.00 3.02
2276 2395 5.677319 TTAAATGACGAGAGGACCTGAAT 57.323 39.130 0.00 0.00 0.00 2.57
2277 2396 6.785337 TTAAATGACGAGAGGACCTGAATA 57.215 37.500 0.00 0.00 0.00 1.75
2278 2397 4.657436 AATGACGAGAGGACCTGAATAC 57.343 45.455 0.00 0.00 0.00 1.89
2279 2398 3.367646 TGACGAGAGGACCTGAATACT 57.632 47.619 0.00 0.00 0.00 2.12
2280 2399 3.698289 TGACGAGAGGACCTGAATACTT 58.302 45.455 0.00 0.00 0.00 2.24
2281 2400 4.851843 TGACGAGAGGACCTGAATACTTA 58.148 43.478 0.00 0.00 0.00 2.24
2282 2401 5.446860 TGACGAGAGGACCTGAATACTTAT 58.553 41.667 0.00 0.00 0.00 1.73
2283 2402 5.892119 TGACGAGAGGACCTGAATACTTATT 59.108 40.000 0.00 0.00 0.00 1.40
2284 2403 6.380274 TGACGAGAGGACCTGAATACTTATTT 59.620 38.462 0.00 0.00 0.00 1.40
2285 2404 7.558807 TGACGAGAGGACCTGAATACTTATTTA 59.441 37.037 0.00 0.00 0.00 1.40
2286 2405 7.942990 ACGAGAGGACCTGAATACTTATTTAG 58.057 38.462 0.00 0.00 0.00 1.85
2287 2406 7.778853 ACGAGAGGACCTGAATACTTATTTAGA 59.221 37.037 0.00 0.00 32.77 2.10
2288 2407 8.293867 CGAGAGGACCTGAATACTTATTTAGAG 58.706 40.741 0.00 0.00 32.77 2.43
2289 2408 9.138596 GAGAGGACCTGAATACTTATTTAGAGT 57.861 37.037 0.00 0.52 32.77 3.24
2292 2411 9.939424 AGGACCTGAATACTTATTTAGAGTACT 57.061 33.333 0.00 0.00 32.77 2.73
2364 2483 9.286170 TGTGTAGCTCTATACAAATACTCCTAG 57.714 37.037 4.36 0.00 37.41 3.02
2492 2695 0.519961 GTATGGCGCAAACTTTCGGT 59.480 50.000 10.83 0.00 0.00 4.69
2512 2715 1.090052 GCAACGTCCTAGGGCATGAC 61.090 60.000 15.12 0.37 0.00 3.06
2523 2726 0.324645 GGGCATGACTCCACCCAAAT 60.325 55.000 0.00 0.00 42.33 2.32
2525 2728 1.616725 GGCATGACTCCACCCAAATCA 60.617 52.381 0.00 0.00 0.00 2.57
2628 2833 4.037565 TCGTCATGCCGTAGTCTATCATTT 59.962 41.667 0.00 0.00 0.00 2.32
2726 2931 1.689273 ACGTCCTAGAGCATGATTCCC 59.311 52.381 0.00 0.00 0.00 3.97
2834 3039 1.197910 GCTAACTCGTCACGCCATAC 58.802 55.000 0.00 0.00 0.00 2.39
2907 3115 5.678616 GCTTTACCAATGCCACGACAAATAT 60.679 40.000 0.00 0.00 0.00 1.28
2935 3143 8.256611 CAGTATGCTATTATTAGATTTGCGGT 57.743 34.615 0.00 0.00 0.00 5.68
3194 3500 8.506168 AATATATACGGGCTTTGGTAATCATG 57.494 34.615 0.00 0.00 0.00 3.07
3213 3519 7.795534 ATCATGCTATCCTTCTATGTCTTCT 57.204 36.000 0.00 0.00 0.00 2.85
3318 3624 9.443323 TGTACTTCAAGTTTGCAGCTATTATTA 57.557 29.630 0.00 0.00 0.00 0.98
3365 3671 7.615757 TCTCATGTACTCTTGATGTTTCTAGGA 59.384 37.037 0.00 0.00 0.00 2.94
3562 3869 5.126545 ACCAAAGAAGTTTGTGTTAGGGTTC 59.873 40.000 0.00 0.00 41.44 3.62
3568 3875 6.766467 AGAAGTTTGTGTTAGGGTTCTGTAAG 59.234 38.462 0.00 0.00 0.00 2.34
3584 3891 2.301583 TGTAAGTAGTGTGCTGCCATCA 59.698 45.455 0.00 0.00 0.00 3.07
3625 3932 8.190784 CCTTGTTTCTTCACTTCAATTGTAACT 58.809 33.333 5.13 0.00 0.00 2.24
3644 3951 4.550076 ACTCTGCTGAGCTACATTTTCT 57.450 40.909 19.49 0.00 43.85 2.52
3751 4061 8.143835 GGATCCTCCATGTTTATTTGTAATTGG 58.856 37.037 3.84 0.00 36.28 3.16
3758 4068 6.978674 TGTTTATTTGTAATTGGGTGTCCA 57.021 33.333 0.00 0.00 42.25 4.02
3863 4173 5.593679 TCTGTTGCTAACTATGTACTCCC 57.406 43.478 0.00 0.00 0.00 4.30
3864 4174 5.269991 TCTGTTGCTAACTATGTACTCCCT 58.730 41.667 0.00 0.00 0.00 4.20
3865 4175 5.360144 TCTGTTGCTAACTATGTACTCCCTC 59.640 44.000 0.00 0.00 0.00 4.30
3866 4176 5.020795 TGTTGCTAACTATGTACTCCCTCA 58.979 41.667 0.00 0.00 0.00 3.86
3867 4177 5.127194 TGTTGCTAACTATGTACTCCCTCAG 59.873 44.000 0.00 0.00 0.00 3.35
3868 4178 4.868268 TGCTAACTATGTACTCCCTCAGT 58.132 43.478 0.00 0.00 39.41 3.41
3869 4179 5.269991 TGCTAACTATGTACTCCCTCAGTT 58.730 41.667 0.00 0.00 36.43 3.16
3870 4180 5.720041 TGCTAACTATGTACTCCCTCAGTTT 59.280 40.000 0.00 0.00 36.43 2.66
3871 4181 6.212791 TGCTAACTATGTACTCCCTCAGTTTT 59.787 38.462 0.00 0.00 36.43 2.43
3872 4182 7.104290 GCTAACTATGTACTCCCTCAGTTTTT 58.896 38.462 0.00 0.00 36.43 1.94
3873 4183 8.255905 GCTAACTATGTACTCCCTCAGTTTTTA 58.744 37.037 0.00 0.00 36.43 1.52
3880 4190 9.668497 ATGTACTCCCTCAGTTTTTATTTACTC 57.332 33.333 0.00 0.00 36.43 2.59
3881 4191 7.816031 TGTACTCCCTCAGTTTTTATTTACTCG 59.184 37.037 0.00 0.00 36.43 4.18
3882 4192 6.171213 ACTCCCTCAGTTTTTATTTACTCGG 58.829 40.000 0.00 0.00 26.56 4.63
3883 4193 4.939439 TCCCTCAGTTTTTATTTACTCGGC 59.061 41.667 0.00 0.00 0.00 5.54
3884 4194 4.698304 CCCTCAGTTTTTATTTACTCGGCA 59.302 41.667 0.00 0.00 0.00 5.69
3885 4195 5.357032 CCCTCAGTTTTTATTTACTCGGCAT 59.643 40.000 0.00 0.00 0.00 4.40
3886 4196 6.540914 CCCTCAGTTTTTATTTACTCGGCATA 59.459 38.462 0.00 0.00 0.00 3.14
3887 4197 7.228706 CCCTCAGTTTTTATTTACTCGGCATAT 59.771 37.037 0.00 0.00 0.00 1.78
3888 4198 8.621286 CCTCAGTTTTTATTTACTCGGCATATT 58.379 33.333 0.00 0.00 0.00 1.28
3897 4207 7.948278 ATTTACTCGGCATATTAGAGTTGAC 57.052 36.000 9.05 0.00 41.93 3.18
3898 4208 6.710597 TTACTCGGCATATTAGAGTTGACT 57.289 37.500 9.05 0.00 41.93 3.41
3899 4209 4.938080 ACTCGGCATATTAGAGTTGACTG 58.062 43.478 0.00 0.00 41.93 3.51
3900 4210 4.645136 ACTCGGCATATTAGAGTTGACTGA 59.355 41.667 0.00 0.00 41.93 3.41
3901 4211 5.127194 ACTCGGCATATTAGAGTTGACTGAA 59.873 40.000 0.00 0.00 41.93 3.02
3902 4212 5.592054 TCGGCATATTAGAGTTGACTGAAG 58.408 41.667 0.00 0.00 0.00 3.02
3903 4213 5.127194 TCGGCATATTAGAGTTGACTGAAGT 59.873 40.000 0.00 0.00 0.00 3.01
3904 4214 5.460419 CGGCATATTAGAGTTGACTGAAGTC 59.540 44.000 3.41 3.41 44.97 3.01
3930 4240 6.505044 ACTTCGTAAAGTTTGACCAAGTTT 57.495 33.333 0.00 0.00 43.28 2.66
3931 4241 7.614124 ACTTCGTAAAGTTTGACCAAGTTTA 57.386 32.000 0.00 0.00 43.28 2.01
3932 4242 8.217131 ACTTCGTAAAGTTTGACCAAGTTTAT 57.783 30.769 0.00 0.00 43.28 1.40
3933 4243 9.328845 ACTTCGTAAAGTTTGACCAAGTTTATA 57.671 29.630 0.00 0.00 43.28 0.98
3934 4244 9.807386 CTTCGTAAAGTTTGACCAAGTTTATAG 57.193 33.333 0.00 2.48 40.73 1.31
3935 4245 9.545105 TTCGTAAAGTTTGACCAAGTTTATAGA 57.455 29.630 0.00 4.22 40.73 1.98
3936 4246 9.545105 TCGTAAAGTTTGACCAAGTTTATAGAA 57.455 29.630 0.00 0.00 40.73 2.10
3940 4250 7.817418 AGTTTGACCAAGTTTATAGAAAGCA 57.183 32.000 0.00 0.00 0.00 3.91
3941 4251 8.232913 AGTTTGACCAAGTTTATAGAAAGCAA 57.767 30.769 0.00 0.00 0.00 3.91
3942 4252 8.860088 AGTTTGACCAAGTTTATAGAAAGCAAT 58.140 29.630 0.00 0.00 0.00 3.56
4070 4380 7.790861 ACTTCGTCAAAGTTTGTAAAACTTG 57.209 32.000 16.50 11.58 46.26 3.16
4071 4381 7.586747 ACTTCGTCAAAGTTTGTAAAACTTGA 58.413 30.769 16.50 13.20 46.26 3.02
4072 4382 7.536281 ACTTCGTCAAAGTTTGTAAAACTTGAC 59.464 33.333 16.50 19.93 46.26 3.18
4073 4383 7.136289 TCGTCAAAGTTTGTAAAACTTGACT 57.864 32.000 25.02 11.36 40.10 3.41
4074 4384 7.586747 TCGTCAAAGTTTGTAAAACTTGACTT 58.413 30.769 25.02 11.13 40.10 3.01
4075 4385 8.077386 TCGTCAAAGTTTGTAAAACTTGACTTT 58.923 29.630 25.02 11.77 40.10 2.66
4079 4389 8.528917 AAAGTTTGTAAAACTTGACTTTGACC 57.471 30.769 16.50 0.00 40.10 4.02
4080 4390 7.222000 AGTTTGTAAAACTTGACTTTGACCA 57.778 32.000 0.00 0.00 0.00 4.02
4081 4391 7.662897 AGTTTGTAAAACTTGACTTTGACCAA 58.337 30.769 0.00 0.00 0.00 3.67
4082 4392 8.145122 AGTTTGTAAAACTTGACTTTGACCAAA 58.855 29.630 0.00 0.00 0.00 3.28
4094 4404 5.484173 CTTTGACCAAAGCTAATATGCGA 57.516 39.130 9.25 0.00 40.94 5.10
4095 4405 5.879237 CTTTGACCAAAGCTAATATGCGAA 58.121 37.500 9.25 0.00 40.94 4.70
4096 4406 4.875544 TGACCAAAGCTAATATGCGAAC 57.124 40.909 0.00 0.00 38.13 3.95
4097 4407 4.513442 TGACCAAAGCTAATATGCGAACT 58.487 39.130 0.00 0.00 38.13 3.01
4098 4408 5.666462 TGACCAAAGCTAATATGCGAACTA 58.334 37.500 0.00 0.00 38.13 2.24
4099 4409 6.110033 TGACCAAAGCTAATATGCGAACTAA 58.890 36.000 0.00 0.00 38.13 2.24
4100 4410 6.596106 TGACCAAAGCTAATATGCGAACTAAA 59.404 34.615 0.00 0.00 38.13 1.85
4101 4411 7.282224 TGACCAAAGCTAATATGCGAACTAAAT 59.718 33.333 0.00 0.00 38.13 1.40
4102 4412 8.671384 ACCAAAGCTAATATGCGAACTAAATA 57.329 30.769 0.00 0.00 38.13 1.40
4103 4413 9.116067 ACCAAAGCTAATATGCGAACTAAATAA 57.884 29.630 0.00 0.00 38.13 1.40
4104 4414 9.944663 CCAAAGCTAATATGCGAACTAAATAAA 57.055 29.630 0.00 0.00 38.13 1.40
4108 4418 9.646336 AGCTAATATGCGAACTAAATAAAAACG 57.354 29.630 0.00 0.00 38.13 3.60
4109 4419 8.407458 GCTAATATGCGAACTAAATAAAAACGC 58.593 33.333 0.00 0.00 43.79 4.84
4112 4422 4.468643 TGCGAACTAAATAAAAACGCAGG 58.531 39.130 0.00 0.00 46.97 4.85
4113 4423 3.849708 GCGAACTAAATAAAAACGCAGGG 59.150 43.478 0.00 0.00 43.18 4.45
4114 4424 4.378666 GCGAACTAAATAAAAACGCAGGGA 60.379 41.667 0.00 0.00 43.18 4.20
4115 4425 5.321516 CGAACTAAATAAAAACGCAGGGAG 58.678 41.667 0.00 0.00 0.00 4.30
4116 4426 5.106830 CGAACTAAATAAAAACGCAGGGAGT 60.107 40.000 0.00 0.00 0.00 3.85
4117 4427 6.091169 CGAACTAAATAAAAACGCAGGGAGTA 59.909 38.462 0.00 0.00 0.00 2.59
4218 4528 3.456277 AGGATTGCGAATTACCCTCTCTT 59.544 43.478 0.00 0.00 0.00 2.85
4471 4781 6.671614 TTATCCTATTACAAAACACGCCAG 57.328 37.500 0.00 0.00 0.00 4.85
4490 4800 4.458397 CCAGGATGAAATGTGCTCTATGT 58.542 43.478 0.00 0.00 39.69 2.29
4534 4844 2.649816 AGGGCTCAAGGTTTATGAAGGT 59.350 45.455 0.00 0.00 0.00 3.50
4600 4910 3.952535 TGAAACAAAAGCTTCTTCTCGC 58.047 40.909 0.00 0.00 0.00 5.03
4672 4992 1.679944 GCCTATGTGCATCACCTGTGT 60.680 52.381 0.00 0.00 32.73 3.72
4673 4993 2.011947 CCTATGTGCATCACCTGTGTG 58.988 52.381 0.00 0.00 44.18 3.82
4681 5001 3.586430 TCACCTGTGTGATCGTGTG 57.414 52.632 0.00 0.00 46.40 3.82
4715 5035 1.597663 AGCGTAACTGTGTGCACTTTC 59.402 47.619 19.41 9.15 0.00 2.62
4804 5124 4.469657 AGGGAAATGTCACAACTTAGCAA 58.530 39.130 0.00 0.00 0.00 3.91
4820 5140 1.774856 AGCAAAGTCTGTTACCCTGGT 59.225 47.619 0.00 0.00 0.00 4.00
4828 5148 3.577415 GTCTGTTACCCTGGTCTAGTTGT 59.423 47.826 0.00 0.00 0.00 3.32
4829 5149 3.576982 TCTGTTACCCTGGTCTAGTTGTG 59.423 47.826 0.00 0.00 0.00 3.33
4830 5150 3.576982 CTGTTACCCTGGTCTAGTTGTGA 59.423 47.826 0.00 0.00 0.00 3.58
4848 5168 7.514721 AGTTGTGACCATTTTCCTCTAGTTTA 58.485 34.615 0.00 0.00 0.00 2.01
5235 5561 1.353022 TCGGCAGGGAATTGTACCTTT 59.647 47.619 0.00 0.00 34.05 3.11
5317 5643 5.455392 ACGTTCTTCTCTGAAAATGCATTG 58.545 37.500 13.82 0.00 0.00 2.82
5334 5660 9.669887 AAATGCATTGTAATAATGACCAAATGT 57.330 25.926 13.82 0.00 0.00 2.71
5460 5787 4.435651 CGAGTTATTTTTGGAGAACGAGGC 60.436 45.833 0.00 0.00 0.00 4.70
5540 6048 9.289303 GTAATTTTCATGTCACATTGATGGTAC 57.711 33.333 0.00 0.00 0.00 3.34
5542 6050 7.523293 TTTTCATGTCACATTGATGGTACTT 57.477 32.000 0.00 0.00 0.00 2.24
5569 6077 1.538849 GGCTTGAACTGTTTGGCTTGG 60.539 52.381 0.00 0.00 0.00 3.61
5578 6086 3.068165 ACTGTTTGGCTTGGCTTACTTTC 59.932 43.478 0.00 0.00 0.00 2.62
5580 6088 3.640967 TGTTTGGCTTGGCTTACTTTCAT 59.359 39.130 0.00 0.00 0.00 2.57
5589 6598 6.424812 GCTTGGCTTACTTTCATGTTTCATTT 59.575 34.615 0.00 0.00 0.00 2.32
5609 6618 9.952030 TTCATTTGGCTCCATATATAATTCGTA 57.048 29.630 0.00 0.00 0.00 3.43
5617 6626 9.988350 GCTCCATATATAATTCGTAAATGTTGG 57.012 33.333 0.00 0.00 0.00 3.77
5670 6679 8.283291 CCTGTTTGACTACACTTTCTAAACATC 58.717 37.037 0.00 0.00 36.39 3.06
5708 6717 7.015682 TCTCTCAATTTCAGGTCTCTTGTAGTT 59.984 37.037 0.00 0.00 0.00 2.24
5924 6933 1.294659 CTCCAAGTCCGCAGCACTTC 61.295 60.000 0.00 0.00 28.92 3.01
5927 6936 3.883744 AAGTCCGCAGCACTTCGGG 62.884 63.158 8.84 0.00 28.92 5.14
5949 6958 3.849951 CCCCGACCAGCAGCGTAT 61.850 66.667 0.00 0.00 0.00 3.06
6035 7044 2.033757 CCTGCTCCTGTTGCTGCT 59.966 61.111 0.00 0.00 0.00 4.24
6123 7132 3.338250 CAAGGCCTGCCCCACCTA 61.338 66.667 5.69 0.00 36.58 3.08
6198 7207 3.824133 CTGCCCCATCAGATGATACAAA 58.176 45.455 12.41 0.00 36.19 2.83
6245 7254 0.676151 CTCCAAGAGGTTCAGCAGCC 60.676 60.000 0.00 0.00 35.89 4.85
6281 7290 3.030168 TACTGGCATGGAGGTGGCG 62.030 63.158 0.00 0.00 46.68 5.69
6334 7343 3.576550 ACAACAAAAAGGGCCGATACAAT 59.423 39.130 0.00 0.00 0.00 2.71
6380 7389 2.563179 GAGCTCTAGTTCTGTGGGTGAA 59.437 50.000 6.43 0.00 0.00 3.18
6392 7401 0.694771 TGGGTGAAGAGCAGCAGAAT 59.305 50.000 0.00 0.00 46.67 2.40
6454 7466 2.102588 GTGCCGCTAAATAGAAGGGAGA 59.897 50.000 0.00 0.00 0.00 3.71
6542 7554 4.323104 GCAACTCTCCTATCCTTGACAAGT 60.323 45.833 14.03 0.00 0.00 3.16
6560 7572 0.811281 GTGCAAGTACCTTGATGCCC 59.189 55.000 8.11 0.00 43.42 5.36
6562 7574 1.098050 GCAAGTACCTTGATGCCCTG 58.902 55.000 8.11 0.00 43.42 4.45
6575 7587 0.843309 TGCCCTGGAGTTGTCTTGAA 59.157 50.000 0.00 0.00 0.00 2.69
6587 7599 7.922278 TGGAGTTGTCTTGAAAATGAATGAAAG 59.078 33.333 0.00 0.00 0.00 2.62
6590 7603 6.159299 TGTCTTGAAAATGAATGAAAGCCA 57.841 33.333 0.00 0.00 0.00 4.75
6591 7604 5.984926 TGTCTTGAAAATGAATGAAAGCCAC 59.015 36.000 0.00 0.00 0.00 5.01
6670 7683 4.003648 ACTTATCACCTGCTTGCTACAAC 58.996 43.478 0.00 0.00 0.00 3.32
6708 7721 6.318648 GGCTAAGATGTTCAACATGTTATCCA 59.681 38.462 24.98 8.12 43.90 3.41
6773 7786 5.007136 TCGCATGTGCATATTTCGTTGATTA 59.993 36.000 0.00 0.00 42.21 1.75
6776 7789 7.533561 CGCATGTGCATATTTCGTTGATTATTA 59.466 33.333 5.77 0.00 42.21 0.98
6808 7821 3.754965 AGCCTGTGACAAGCTGAAAATA 58.245 40.909 8.06 0.00 34.99 1.40
6810 7823 4.397417 AGCCTGTGACAAGCTGAAAATATC 59.603 41.667 8.06 0.00 34.99 1.63
6812 7825 4.393062 CCTGTGACAAGCTGAAAATATCGT 59.607 41.667 0.00 0.00 0.00 3.73
6817 7830 5.407084 TGACAAGCTGAAAATATCGTTTCGA 59.593 36.000 0.00 0.00 39.85 3.71
6818 7831 6.073494 TGACAAGCTGAAAATATCGTTTCGAA 60.073 34.615 0.00 0.00 39.99 3.71
6819 7832 6.664515 ACAAGCTGAAAATATCGTTTCGAAA 58.335 32.000 6.47 6.47 39.99 3.46
6820 7833 7.136119 ACAAGCTGAAAATATCGTTTCGAAAA 58.864 30.769 13.10 0.00 39.99 2.29
6821 7834 7.646130 ACAAGCTGAAAATATCGTTTCGAAAAA 59.354 29.630 13.10 4.35 39.99 1.94
6847 7860 6.456795 AAAGACAAGCTGAAAATATAGCCC 57.543 37.500 0.00 0.00 40.76 5.19
6848 7861 4.464947 AGACAAGCTGAAAATATAGCCCC 58.535 43.478 0.00 0.00 40.76 5.80
6849 7862 3.214328 ACAAGCTGAAAATATAGCCCCG 58.786 45.455 0.00 0.00 40.76 5.73
6850 7863 1.897560 AGCTGAAAATATAGCCCCGC 58.102 50.000 0.00 0.00 40.76 6.13
6851 7864 1.421646 AGCTGAAAATATAGCCCCGCT 59.578 47.619 0.00 0.00 43.41 5.52
6852 7865 1.537202 GCTGAAAATATAGCCCCGCTG 59.463 52.381 0.00 0.00 40.10 5.18
6853 7866 2.810400 GCTGAAAATATAGCCCCGCTGA 60.810 50.000 0.00 0.00 40.10 4.26
6854 7867 3.679389 CTGAAAATATAGCCCCGCTGAT 58.321 45.455 0.00 0.00 40.10 2.90
6855 7868 4.074970 CTGAAAATATAGCCCCGCTGATT 58.925 43.478 0.00 0.00 40.10 2.57
6856 7869 3.820467 TGAAAATATAGCCCCGCTGATTG 59.180 43.478 0.00 0.00 40.10 2.67
6857 7870 3.508845 AAATATAGCCCCGCTGATTGT 57.491 42.857 0.00 0.00 40.10 2.71
6858 7871 3.508845 AATATAGCCCCGCTGATTGTT 57.491 42.857 0.00 0.00 40.10 2.83
6859 7872 2.254546 TATAGCCCCGCTGATTGTTG 57.745 50.000 0.00 0.00 40.10 3.33
6860 7873 0.255890 ATAGCCCCGCTGATTGTTGT 59.744 50.000 0.00 0.00 40.10 3.32
6861 7874 0.037590 TAGCCCCGCTGATTGTTGTT 59.962 50.000 0.00 0.00 40.10 2.83
6862 7875 1.212751 GCCCCGCTGATTGTTGTTC 59.787 57.895 0.00 0.00 0.00 3.18
6863 7876 1.523154 GCCCCGCTGATTGTTGTTCA 61.523 55.000 0.00 0.00 0.00 3.18
6864 7877 1.176527 CCCCGCTGATTGTTGTTCAT 58.823 50.000 0.00 0.00 0.00 2.57
6865 7878 1.545582 CCCCGCTGATTGTTGTTCATT 59.454 47.619 0.00 0.00 0.00 2.57
6866 7879 2.598589 CCCGCTGATTGTTGTTCATTG 58.401 47.619 0.00 0.00 0.00 2.82
6867 7880 2.598589 CCGCTGATTGTTGTTCATTGG 58.401 47.619 0.00 0.00 0.00 3.16
6868 7881 2.030007 CCGCTGATTGTTGTTCATTGGT 60.030 45.455 0.00 0.00 0.00 3.67
6869 7882 3.236816 CGCTGATTGTTGTTCATTGGTC 58.763 45.455 0.00 0.00 0.00 4.02
6870 7883 3.578688 GCTGATTGTTGTTCATTGGTCC 58.421 45.455 0.00 0.00 0.00 4.46
6871 7884 3.614870 GCTGATTGTTGTTCATTGGTCCC 60.615 47.826 0.00 0.00 0.00 4.46
6872 7885 2.556189 TGATTGTTGTTCATTGGTCCCG 59.444 45.455 0.00 0.00 0.00 5.14
6873 7886 2.350057 TTGTTGTTCATTGGTCCCGA 57.650 45.000 0.00 0.00 0.00 5.14
6874 7887 1.600023 TGTTGTTCATTGGTCCCGAC 58.400 50.000 0.00 0.00 0.00 4.79
6875 7888 1.142060 TGTTGTTCATTGGTCCCGACT 59.858 47.619 0.00 0.00 0.00 4.18
6876 7889 2.369203 TGTTGTTCATTGGTCCCGACTA 59.631 45.455 0.00 0.00 0.00 2.59
6908 7921 6.265422 TCTGTGAATCTCAACTTGTCTACTCA 59.735 38.462 0.00 0.00 0.00 3.41
6910 7923 6.870439 TGTGAATCTCAACTTGTCTACTCATG 59.130 38.462 0.00 0.00 0.00 3.07
6911 7924 5.871524 TGAATCTCAACTTGTCTACTCATGC 59.128 40.000 0.00 0.00 0.00 4.06
6912 7925 4.193826 TCTCAACTTGTCTACTCATGCC 57.806 45.455 0.00 0.00 0.00 4.40
6946 7959 5.337578 TGTCCGTCTGATGTTTGATGATA 57.662 39.130 0.00 0.00 0.00 2.15
6947 7960 5.917462 TGTCCGTCTGATGTTTGATGATAT 58.083 37.500 0.00 0.00 0.00 1.63
7047 8070 4.023291 ACTGGTTGACCAAGTGTTCAATT 58.977 39.130 4.18 0.00 46.97 2.32
7048 8071 4.097892 ACTGGTTGACCAAGTGTTCAATTC 59.902 41.667 4.18 0.00 46.97 2.17
7049 8072 4.277476 TGGTTGACCAAGTGTTCAATTCT 58.723 39.130 0.00 0.00 44.35 2.40
7050 8073 4.709397 TGGTTGACCAAGTGTTCAATTCTT 59.291 37.500 0.00 0.00 44.35 2.52
7051 8074 5.163561 TGGTTGACCAAGTGTTCAATTCTTC 60.164 40.000 0.00 0.00 44.35 2.87
7052 8075 5.163561 GGTTGACCAAGTGTTCAATTCTTCA 60.164 40.000 0.00 0.00 35.64 3.02
7053 8076 5.756195 TGACCAAGTGTTCAATTCTTCAG 57.244 39.130 0.00 0.00 0.00 3.02
7054 8077 5.192927 TGACCAAGTGTTCAATTCTTCAGT 58.807 37.500 0.00 0.00 0.00 3.41
7055 8078 5.296780 TGACCAAGTGTTCAATTCTTCAGTC 59.703 40.000 0.00 0.00 0.00 3.51
7056 8079 4.580580 ACCAAGTGTTCAATTCTTCAGTCC 59.419 41.667 0.00 0.00 0.00 3.85
7057 8080 4.319766 CCAAGTGTTCAATTCTTCAGTCCG 60.320 45.833 0.00 0.00 0.00 4.79
7058 8081 4.336889 AGTGTTCAATTCTTCAGTCCGA 57.663 40.909 0.00 0.00 0.00 4.55
7059 8082 4.310769 AGTGTTCAATTCTTCAGTCCGAG 58.689 43.478 0.00 0.00 0.00 4.63
7060 8083 3.433615 GTGTTCAATTCTTCAGTCCGAGG 59.566 47.826 0.00 0.00 0.00 4.63
7061 8084 3.323691 TGTTCAATTCTTCAGTCCGAGGA 59.676 43.478 0.00 0.00 0.00 3.71
7062 8085 4.020218 TGTTCAATTCTTCAGTCCGAGGAT 60.020 41.667 0.00 0.00 28.41 3.24
7063 8086 4.128925 TCAATTCTTCAGTCCGAGGATG 57.871 45.455 0.00 0.00 28.41 3.51
7064 8087 2.611225 ATTCTTCAGTCCGAGGATGC 57.389 50.000 0.00 0.00 28.41 3.91
7065 8088 0.537188 TTCTTCAGTCCGAGGATGCC 59.463 55.000 0.00 0.00 28.41 4.40
7066 8089 0.614697 TCTTCAGTCCGAGGATGCCA 60.615 55.000 0.00 0.00 0.00 4.92
7067 8090 0.179089 CTTCAGTCCGAGGATGCCAG 60.179 60.000 0.00 0.00 0.00 4.85
7068 8091 2.202987 CAGTCCGAGGATGCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
7069 8092 3.474570 AGTCCGAGGATGCCAGCC 61.475 66.667 0.00 0.00 0.00 4.85
7070 8093 3.785859 GTCCGAGGATGCCAGCCA 61.786 66.667 0.01 0.00 0.00 4.75
7071 8094 3.473647 TCCGAGGATGCCAGCCAG 61.474 66.667 0.01 0.00 0.00 4.85
7072 8095 4.559063 CCGAGGATGCCAGCCAGG 62.559 72.222 0.01 0.00 41.84 4.45
7073 8096 3.790437 CGAGGATGCCAGCCAGGT 61.790 66.667 0.01 0.00 40.61 4.00
7074 8097 2.191641 GAGGATGCCAGCCAGGTC 59.808 66.667 0.01 0.00 40.61 3.85
7075 8098 3.412624 GAGGATGCCAGCCAGGTCC 62.413 68.421 0.01 0.00 40.61 4.46
7076 8099 4.512914 GGATGCCAGCCAGGTCCC 62.513 72.222 0.00 0.00 40.61 4.46
7077 8100 4.512914 GATGCCAGCCAGGTCCCC 62.513 72.222 0.00 0.00 40.61 4.81
7176 8199 3.270027 TGGATACGAAATGCTGAACTGG 58.730 45.455 0.00 0.00 42.51 4.00
7184 8207 0.606401 ATGCTGAACTGGTCAACCCG 60.606 55.000 0.00 0.00 35.22 5.28
7195 8218 1.429463 GTCAACCCGACTGCTACTTG 58.571 55.000 0.00 0.00 41.81 3.16
7214 8237 1.000394 TGCTAGCTCAGTTACGCAACA 60.000 47.619 17.23 0.00 37.10 3.33
7232 8255 5.221880 GCAACAATGAAGCTACAAATCACA 58.778 37.500 0.00 0.00 0.00 3.58
7251 8278 3.620821 CACATTACACATGACACGGCATA 59.379 43.478 0.00 0.00 0.00 3.14
7276 8303 4.735132 TACACGAGCACGCTGCCC 62.735 66.667 2.62 0.00 46.52 5.36
7293 8320 1.021390 CCCACAGTCAGCAACGATCC 61.021 60.000 0.00 0.00 0.00 3.36
7299 8326 1.203523 AGTCAGCAACGATCCTCAGAC 59.796 52.381 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
124 130 8.293157 GGGAGTTCGTAATTGTAGTATACTACC 58.707 40.741 31.00 18.58 46.22 3.18
130 136 4.500375 GCGGGGAGTTCGTAATTGTAGTAT 60.500 45.833 0.00 0.00 0.00 2.12
131 137 3.181487 GCGGGGAGTTCGTAATTGTAGTA 60.181 47.826 0.00 0.00 0.00 1.82
132 138 2.417787 GCGGGGAGTTCGTAATTGTAGT 60.418 50.000 0.00 0.00 0.00 2.73
133 139 2.199236 GCGGGGAGTTCGTAATTGTAG 58.801 52.381 0.00 0.00 0.00 2.74
134 140 1.549620 TGCGGGGAGTTCGTAATTGTA 59.450 47.619 0.00 0.00 0.00 2.41
135 141 0.322322 TGCGGGGAGTTCGTAATTGT 59.678 50.000 0.00 0.00 0.00 2.71
136 142 1.444836 TTGCGGGGAGTTCGTAATTG 58.555 50.000 0.00 0.00 0.00 2.32
137 143 2.188062 TTTGCGGGGAGTTCGTAATT 57.812 45.000 0.00 0.00 32.87 1.40
138 144 2.188062 TTTTGCGGGGAGTTCGTAAT 57.812 45.000 0.00 0.00 32.87 1.89
140 146 3.702147 TTTTTGCGGGGAGTTCGTA 57.298 47.368 0.00 0.00 0.00 3.43
141 147 4.563404 TTTTTGCGGGGAGTTCGT 57.437 50.000 0.00 0.00 0.00 3.85
160 166 9.838975 TGAGTGTTCGTAATCGTAGTATTTTTA 57.161 29.630 0.00 0.00 38.33 1.52
161 167 8.746922 TGAGTGTTCGTAATCGTAGTATTTTT 57.253 30.769 0.00 0.00 38.33 1.94
162 168 8.025445 ACTGAGTGTTCGTAATCGTAGTATTTT 58.975 33.333 0.00 0.00 38.33 1.82
163 169 7.533426 ACTGAGTGTTCGTAATCGTAGTATTT 58.467 34.615 0.00 0.00 38.33 1.40
164 170 7.081526 ACTGAGTGTTCGTAATCGTAGTATT 57.918 36.000 0.00 0.00 38.33 1.89
173 179 3.734231 CGTGTTGACTGAGTGTTCGTAAT 59.266 43.478 0.00 0.00 0.00 1.89
178 184 1.202486 TCCCGTGTTGACTGAGTGTTC 60.202 52.381 0.00 0.00 0.00 3.18
186 192 2.779506 GGAGAAAATCCCGTGTTGACT 58.220 47.619 0.00 0.00 43.01 3.41
260 274 1.152756 ACCTTTGGCTGGCTTCGTT 60.153 52.632 2.00 0.00 0.00 3.85
319 333 2.290287 CCACCCGTCATGGAGGACA 61.290 63.158 8.64 0.00 42.00 4.02
445 479 0.034896 CGGTAAGTGGGTGTCAGCTT 59.965 55.000 1.41 0.00 0.00 3.74
560 606 1.202639 TGACTCGTGGCAGTGAAATGT 60.203 47.619 0.00 0.00 0.00 2.71
562 608 2.254546 TTGACTCGTGGCAGTGAAAT 57.745 45.000 0.00 0.00 0.00 2.17
575 621 3.311048 GCTTTGAGATTCGGGATTGACTC 59.689 47.826 0.00 0.00 0.00 3.36
576 622 3.274288 GCTTTGAGATTCGGGATTGACT 58.726 45.455 0.00 0.00 0.00 3.41
801 865 0.390472 GTGTCTGCTAGTGTGGAGGC 60.390 60.000 0.00 0.00 0.00 4.70
835 902 3.752167 GGGACGGAGGGAGGAGGA 61.752 72.222 0.00 0.00 0.00 3.71
836 903 4.862823 GGGGACGGAGGGAGGAGG 62.863 77.778 0.00 0.00 0.00 4.30
837 904 4.862823 GGGGGACGGAGGGAGGAG 62.863 77.778 0.00 0.00 0.00 3.69
848 915 2.442458 GGAGGAGAGACGGGGGAC 60.442 72.222 0.00 0.00 0.00 4.46
896 963 2.514516 ATTTTTCGCCCCTCCCCCTG 62.515 60.000 0.00 0.00 0.00 4.45
898 965 0.754217 GTATTTTTCGCCCCTCCCCC 60.754 60.000 0.00 0.00 0.00 5.40
899 966 0.754217 GGTATTTTTCGCCCCTCCCC 60.754 60.000 0.00 0.00 0.00 4.81
900 967 0.033894 TGGTATTTTTCGCCCCTCCC 60.034 55.000 0.00 0.00 0.00 4.30
901 968 1.389555 CTGGTATTTTTCGCCCCTCC 58.610 55.000 0.00 0.00 0.00 4.30
902 969 1.389555 CCTGGTATTTTTCGCCCCTC 58.610 55.000 0.00 0.00 0.00 4.30
903 970 0.033503 CCCTGGTATTTTTCGCCCCT 60.034 55.000 0.00 0.00 0.00 4.79
904 971 1.040893 CCCCTGGTATTTTTCGCCCC 61.041 60.000 0.00 0.00 0.00 5.80
905 972 1.040893 CCCCCTGGTATTTTTCGCCC 61.041 60.000 0.00 0.00 0.00 6.13
906 973 0.033894 TCCCCCTGGTATTTTTCGCC 60.034 55.000 0.00 0.00 0.00 5.54
908 975 4.282449 AGTTTTTCCCCCTGGTATTTTTCG 59.718 41.667 0.00 0.00 0.00 3.46
909 976 5.566032 CGAGTTTTTCCCCCTGGTATTTTTC 60.566 44.000 0.00 0.00 0.00 2.29
910 977 4.282449 CGAGTTTTTCCCCCTGGTATTTTT 59.718 41.667 0.00 0.00 0.00 1.94
911 978 3.830178 CGAGTTTTTCCCCCTGGTATTTT 59.170 43.478 0.00 0.00 0.00 1.82
912 979 3.427573 CGAGTTTTTCCCCCTGGTATTT 58.572 45.455 0.00 0.00 0.00 1.40
913 980 2.882643 GCGAGTTTTTCCCCCTGGTATT 60.883 50.000 0.00 0.00 0.00 1.89
914 981 1.340697 GCGAGTTTTTCCCCCTGGTAT 60.341 52.381 0.00 0.00 0.00 2.73
915 982 0.037160 GCGAGTTTTTCCCCCTGGTA 59.963 55.000 0.00 0.00 0.00 3.25
955 1022 0.308993 GTCATAGAAGGGCAATGCGC 59.691 55.000 14.75 14.75 41.91 6.09
1467 1553 4.039245 GTCTCACCATCTTTATCGGATCCA 59.961 45.833 13.41 0.00 0.00 3.41
1521 1607 0.734253 CAGACGACACTAGCAGGTGC 60.734 60.000 8.63 0.00 40.52 5.01
1580 1666 4.101645 TCGAACCATTTTAGGACCCAAA 57.898 40.909 0.00 0.00 0.00 3.28
1709 1797 2.095567 CAGGAATTTTGACGGCAGACAG 60.096 50.000 0.00 0.00 0.00 3.51
1795 1912 9.853177 CCTTTTAGGACCTGATGAATACTTATT 57.147 33.333 3.53 0.00 37.67 1.40
1804 1921 4.080526 GCTTACCCTTTTAGGACCTGATGA 60.081 45.833 3.53 0.00 37.67 2.92
1805 1922 4.200092 GCTTACCCTTTTAGGACCTGATG 58.800 47.826 3.53 0.00 37.67 3.07
1806 1923 3.202373 GGCTTACCCTTTTAGGACCTGAT 59.798 47.826 3.53 0.00 37.67 2.90
1807 1924 2.574824 GGCTTACCCTTTTAGGACCTGA 59.425 50.000 3.53 0.00 37.67 3.86
1808 1925 2.576648 AGGCTTACCCTTTTAGGACCTG 59.423 50.000 3.53 0.00 43.06 4.00
1809 1926 2.844966 GAGGCTTACCCTTTTAGGACCT 59.155 50.000 0.00 0.00 46.60 3.85
1810 1927 2.844966 AGAGGCTTACCCTTTTAGGACC 59.155 50.000 0.00 0.00 46.60 4.46
1811 1928 4.571369 AAGAGGCTTACCCTTTTAGGAC 57.429 45.455 0.00 0.00 46.60 3.85
1812 1929 5.594199 AAAAGAGGCTTACCCTTTTAGGA 57.406 39.130 9.22 0.00 46.60 2.94
1866 1983 9.853177 CCTTTTAGGACCTGATGAATACTTATT 57.147 33.333 3.53 0.00 37.67 1.40
1867 1984 8.440771 CCCTTTTAGGACCTGATGAATACTTAT 58.559 37.037 3.53 0.00 37.67 1.73
1868 1985 7.404980 ACCCTTTTAGGACCTGATGAATACTTA 59.595 37.037 3.53 0.00 37.67 2.24
1869 1986 6.217693 ACCCTTTTAGGACCTGATGAATACTT 59.782 38.462 3.53 0.00 37.67 2.24
1870 1987 5.731678 ACCCTTTTAGGACCTGATGAATACT 59.268 40.000 3.53 0.00 37.67 2.12
1871 1988 6.002653 ACCCTTTTAGGACCTGATGAATAC 57.997 41.667 3.53 0.00 37.67 1.89
1872 1989 7.637301 GCTTACCCTTTTAGGACCTGATGAATA 60.637 40.741 3.53 0.00 37.67 1.75
1873 1990 6.652205 TTACCCTTTTAGGACCTGATGAAT 57.348 37.500 3.53 0.00 37.67 2.57
1874 1991 5.572885 GCTTACCCTTTTAGGACCTGATGAA 60.573 44.000 3.53 0.00 37.67 2.57
1875 1992 4.080526 GCTTACCCTTTTAGGACCTGATGA 60.081 45.833 3.53 0.00 37.67 2.92
1876 1993 4.200092 GCTTACCCTTTTAGGACCTGATG 58.800 47.826 3.53 0.00 37.67 3.07
1877 1994 3.202373 GGCTTACCCTTTTAGGACCTGAT 59.798 47.826 3.53 0.00 37.67 2.90
1906 2023 6.387465 TGTATACTGCTACACAAGACAGAAC 58.613 40.000 4.17 0.00 34.99 3.01
2050 2169 7.509797 GGAATGCTAAAAAGGAAAATGTTTCG 58.490 34.615 0.00 0.00 0.00 3.46
2161 2280 1.140312 GGGAATCATGCCCTAGGACA 58.860 55.000 11.48 4.87 42.56 4.02
2183 2302 3.354948 TGGCATAATCAGACTGCTTGT 57.645 42.857 1.77 0.00 36.18 3.16
2189 2308 3.572632 ACTGCATGGCATAATCAGACT 57.427 42.857 22.22 5.99 38.13 3.24
2252 2371 6.785337 TTCAGGTCCTCTCGTCATTTAATA 57.215 37.500 0.00 0.00 0.00 0.98
2257 2376 4.282496 AGTATTCAGGTCCTCTCGTCATT 58.718 43.478 0.00 0.00 0.00 2.57
2258 2377 3.904717 AGTATTCAGGTCCTCTCGTCAT 58.095 45.455 0.00 0.00 0.00 3.06
2259 2378 3.367646 AGTATTCAGGTCCTCTCGTCA 57.632 47.619 0.00 0.00 0.00 4.35
2260 2379 6.394025 AATAAGTATTCAGGTCCTCTCGTC 57.606 41.667 0.00 0.00 0.00 4.20
2261 2380 6.793505 AAATAAGTATTCAGGTCCTCTCGT 57.206 37.500 0.00 0.00 0.00 4.18
2262 2381 8.167605 TCTAAATAAGTATTCAGGTCCTCTCG 57.832 38.462 0.00 0.00 0.00 4.04
2263 2382 9.138596 ACTCTAAATAAGTATTCAGGTCCTCTC 57.861 37.037 0.00 0.00 0.00 3.20
2266 2385 9.939424 AGTACTCTAAATAAGTATTCAGGTCCT 57.061 33.333 0.00 0.00 32.19 3.85
2291 2410 9.780186 CCCTTTTAGGACCTGAATACTTATTAG 57.220 37.037 3.53 0.00 37.67 1.73
2292 2411 9.287818 ACCCTTTTAGGACCTGAATACTTATTA 57.712 33.333 3.53 0.00 37.67 0.98
2293 2412 8.171337 ACCCTTTTAGGACCTGAATACTTATT 57.829 34.615 3.53 0.00 37.67 1.40
2294 2413 7.766736 ACCCTTTTAGGACCTGAATACTTAT 57.233 36.000 3.53 0.00 37.67 1.73
2295 2414 8.683776 TTACCCTTTTAGGACCTGAATACTTA 57.316 34.615 3.53 0.00 37.67 2.24
2364 2483 2.028020 AGTAGCTTAGGACCTGTGCAAC 60.028 50.000 18.60 6.65 37.35 4.17
2492 2695 1.078497 CATGCCCTAGGACGTTGCA 60.078 57.895 11.48 11.45 36.23 4.08
2512 2715 2.645838 ATCGGATGATTTGGGTGGAG 57.354 50.000 0.00 0.00 0.00 3.86
2523 2726 2.565046 TGCATGGCATAATCGGATGA 57.435 45.000 0.00 0.00 31.71 2.92
2659 2864 3.134574 TGGTAAAGCACAGGTAACCAG 57.865 47.619 0.00 0.00 33.28 4.00
2726 2931 0.249322 ATAATCGGACGACTTGGGCG 60.249 55.000 0.00 0.00 0.00 6.13
2871 3079 1.338674 TGGTAAAGCACAGGTCATCGG 60.339 52.381 0.00 0.00 0.00 4.18
2872 3080 2.093306 TGGTAAAGCACAGGTCATCG 57.907 50.000 0.00 0.00 0.00 3.84
3006 3214 7.201453 GCAGAACGTAGATTCTTCTCCTTTTAC 60.201 40.741 0.00 0.00 36.78 2.01
3194 3500 5.010516 TGAGCAGAAGACATAGAAGGATAGC 59.989 44.000 0.00 0.00 0.00 2.97
3213 3519 3.325870 CACCTACAGAAATCGTTGAGCA 58.674 45.455 0.00 0.00 0.00 4.26
3365 3671 6.488683 TCCCTTCTTTGTTATGAAATTCACGT 59.511 34.615 0.00 0.00 0.00 4.49
3467 3773 0.478072 TGTTTGTGTGAGAGGGGCAT 59.522 50.000 0.00 0.00 0.00 4.40
3562 3869 2.455674 TGGCAGCACACTACTTACAG 57.544 50.000 0.00 0.00 0.00 2.74
3568 3875 0.379669 GCATGATGGCAGCACACTAC 59.620 55.000 7.97 0.00 0.00 2.73
3584 3891 6.131961 AGAAACAAGGCTTAATATGGAGCAT 58.868 36.000 0.00 3.09 40.63 3.79
3625 3932 4.277515 ACAGAAAATGTAGCTCAGCAGA 57.722 40.909 0.00 0.00 41.60 4.26
3709 4016 5.256474 GAGGATCCAAAAGTTCAGGATTGA 58.744 41.667 15.82 0.00 42.03 2.57
3758 4068 6.013379 TCAGAAAGTTCAGTTGTCCATCCTAT 60.013 38.462 0.00 0.00 0.00 2.57
3859 4169 5.064834 GCCGAGTAAATAAAAACTGAGGGAG 59.935 44.000 0.00 0.00 0.00 4.30
3860 4170 4.939439 GCCGAGTAAATAAAAACTGAGGGA 59.061 41.667 0.00 0.00 0.00 4.20
3861 4171 4.698304 TGCCGAGTAAATAAAAACTGAGGG 59.302 41.667 0.00 0.00 0.00 4.30
3862 4172 5.873179 TGCCGAGTAAATAAAAACTGAGG 57.127 39.130 0.00 0.00 0.00 3.86
3871 4181 9.472361 GTCAACTCTAATATGCCGAGTAAATAA 57.528 33.333 0.00 0.00 37.04 1.40
3872 4182 8.857098 AGTCAACTCTAATATGCCGAGTAAATA 58.143 33.333 0.00 0.00 37.04 1.40
3873 4183 7.653713 CAGTCAACTCTAATATGCCGAGTAAAT 59.346 37.037 0.00 0.00 37.04 1.40
3874 4184 6.978659 CAGTCAACTCTAATATGCCGAGTAAA 59.021 38.462 0.00 0.00 37.04 2.01
3875 4185 6.320418 TCAGTCAACTCTAATATGCCGAGTAA 59.680 38.462 0.00 0.00 37.04 2.24
3876 4186 5.826208 TCAGTCAACTCTAATATGCCGAGTA 59.174 40.000 0.00 0.00 37.04 2.59
3877 4187 4.645136 TCAGTCAACTCTAATATGCCGAGT 59.355 41.667 0.00 0.00 39.53 4.18
3878 4188 5.188327 TCAGTCAACTCTAATATGCCGAG 57.812 43.478 0.00 0.00 0.00 4.63
3879 4189 5.127194 ACTTCAGTCAACTCTAATATGCCGA 59.873 40.000 0.00 0.00 0.00 5.54
3880 4190 5.352284 ACTTCAGTCAACTCTAATATGCCG 58.648 41.667 0.00 0.00 0.00 5.69
3881 4191 6.836577 GACTTCAGTCAACTCTAATATGCC 57.163 41.667 1.86 0.00 44.18 4.40
3908 4218 9.807386 CTATAAACTTGGTCAAACTTTACGAAG 57.193 33.333 0.00 0.00 37.43 3.79
3909 4219 9.545105 TCTATAAACTTGGTCAAACTTTACGAA 57.455 29.630 0.00 0.00 0.00 3.85
3910 4220 9.545105 TTCTATAAACTTGGTCAAACTTTACGA 57.455 29.630 0.00 0.00 0.00 3.43
3914 4224 8.691797 TGCTTTCTATAAACTTGGTCAAACTTT 58.308 29.630 0.00 0.00 0.00 2.66
3915 4225 8.232913 TGCTTTCTATAAACTTGGTCAAACTT 57.767 30.769 0.00 0.00 0.00 2.66
3916 4226 7.817418 TGCTTTCTATAAACTTGGTCAAACT 57.183 32.000 0.00 0.00 0.00 2.66
4047 4357 7.749126 AGTCAAGTTTTACAAACTTTGACGAAG 59.251 33.333 22.20 0.50 39.86 3.79
4048 4358 7.586747 AGTCAAGTTTTACAAACTTTGACGAA 58.413 30.769 22.20 0.00 39.86 3.85
4049 4359 7.136289 AGTCAAGTTTTACAAACTTTGACGA 57.864 32.000 22.20 12.85 39.86 4.20
4050 4360 7.790861 AAGTCAAGTTTTACAAACTTTGACG 57.209 32.000 22.20 11.48 39.86 4.35
4054 4364 8.145122 TGGTCAAAGTCAAGTTTTACAAACTTT 58.855 29.630 11.14 0.00 38.32 2.66
4055 4365 7.662897 TGGTCAAAGTCAAGTTTTACAAACTT 58.337 30.769 8.50 8.50 40.80 2.66
4056 4366 7.222000 TGGTCAAAGTCAAGTTTTACAAACT 57.778 32.000 0.00 0.00 0.00 2.66
4057 4367 7.876896 TTGGTCAAAGTCAAGTTTTACAAAC 57.123 32.000 0.00 0.00 0.00 2.93
4058 4368 8.527567 CTTTGGTCAAAGTCAAGTTTTACAAA 57.472 30.769 13.58 0.00 42.02 2.83
4073 4383 5.414454 AGTTCGCATATTAGCTTTGGTCAAA 59.586 36.000 0.00 0.00 0.00 2.69
4074 4384 4.941263 AGTTCGCATATTAGCTTTGGTCAA 59.059 37.500 0.00 0.00 0.00 3.18
4075 4385 4.513442 AGTTCGCATATTAGCTTTGGTCA 58.487 39.130 0.00 0.00 0.00 4.02
4076 4386 6.598753 TTAGTTCGCATATTAGCTTTGGTC 57.401 37.500 0.00 0.00 0.00 4.02
4077 4387 6.995511 TTTAGTTCGCATATTAGCTTTGGT 57.004 33.333 0.00 0.00 0.00 3.67
4078 4388 9.944663 TTTATTTAGTTCGCATATTAGCTTTGG 57.055 29.630 0.00 0.00 0.00 3.28
4082 4392 9.646336 CGTTTTTATTTAGTTCGCATATTAGCT 57.354 29.630 0.00 0.00 0.00 3.32
4083 4393 8.407458 GCGTTTTTATTTAGTTCGCATATTAGC 58.593 33.333 0.00 0.00 41.42 3.09
4084 4394 9.428363 TGCGTTTTTATTTAGTTCGCATATTAG 57.572 29.630 5.29 0.00 45.25 1.73
4091 4401 3.849708 CCCTGCGTTTTTATTTAGTTCGC 59.150 43.478 0.00 0.00 41.98 4.70
4092 4402 5.106830 ACTCCCTGCGTTTTTATTTAGTTCG 60.107 40.000 0.00 0.00 0.00 3.95
4093 4403 6.250344 ACTCCCTGCGTTTTTATTTAGTTC 57.750 37.500 0.00 0.00 0.00 3.01
4094 4404 7.446319 AGTTACTCCCTGCGTTTTTATTTAGTT 59.554 33.333 0.00 0.00 0.00 2.24
4095 4405 6.938596 AGTTACTCCCTGCGTTTTTATTTAGT 59.061 34.615 0.00 0.00 0.00 2.24
4096 4406 7.333672 AGAGTTACTCCCTGCGTTTTTATTTAG 59.666 37.037 8.96 0.00 0.00 1.85
4097 4407 7.163441 AGAGTTACTCCCTGCGTTTTTATTTA 58.837 34.615 8.96 0.00 0.00 1.40
4098 4408 6.002082 AGAGTTACTCCCTGCGTTTTTATTT 58.998 36.000 8.96 0.00 0.00 1.40
4099 4409 5.557866 AGAGTTACTCCCTGCGTTTTTATT 58.442 37.500 8.96 0.00 0.00 1.40
4100 4410 5.161943 AGAGTTACTCCCTGCGTTTTTAT 57.838 39.130 8.96 0.00 0.00 1.40
4101 4411 4.612264 AGAGTTACTCCCTGCGTTTTTA 57.388 40.909 8.96 0.00 0.00 1.52
4102 4412 3.487120 AGAGTTACTCCCTGCGTTTTT 57.513 42.857 8.96 0.00 0.00 1.94
4103 4413 3.487120 AAGAGTTACTCCCTGCGTTTT 57.513 42.857 8.96 0.00 0.00 2.43
4104 4414 3.487120 AAAGAGTTACTCCCTGCGTTT 57.513 42.857 8.96 0.00 0.00 3.60
4105 4415 4.820894 ATAAAGAGTTACTCCCTGCGTT 57.179 40.909 8.96 0.00 0.00 4.84
4106 4416 4.820894 AATAAAGAGTTACTCCCTGCGT 57.179 40.909 8.96 0.00 0.00 5.24
4107 4417 5.411669 ACAAAATAAAGAGTTACTCCCTGCG 59.588 40.000 8.96 0.00 0.00 5.18
4108 4418 6.819397 ACAAAATAAAGAGTTACTCCCTGC 57.181 37.500 8.96 0.00 0.00 4.85
4204 4514 5.297569 ACATGGCTAAGAGAGGGTAATTC 57.702 43.478 0.00 0.00 0.00 2.17
4218 4528 6.909550 ATTTACAAAACAAGGACATGGCTA 57.090 33.333 0.00 0.00 0.00 3.93
4471 4781 6.690194 AGAAACATAGAGCACATTTCATCC 57.310 37.500 0.00 0.00 32.78 3.51
4490 4800 9.292195 CCCTTCAACAGTATTAACCTAAAGAAA 57.708 33.333 0.00 0.00 0.00 2.52
4534 4844 8.684386 TGTTTATCTCAGTCACATTTACCAAA 57.316 30.769 0.00 0.00 0.00 3.28
4600 4910 0.682209 TACCTTCGAACCCTCCTCGG 60.682 60.000 0.00 0.00 36.93 4.63
4672 4992 2.100087 ACACACTACACACACACGATCA 59.900 45.455 0.00 0.00 0.00 2.92
4673 4993 2.739292 ACACACTACACACACACGATC 58.261 47.619 0.00 0.00 0.00 3.69
4674 4994 2.882927 ACACACTACACACACACGAT 57.117 45.000 0.00 0.00 0.00 3.73
4675 4995 2.658373 AACACACTACACACACACGA 57.342 45.000 0.00 0.00 0.00 4.35
4676 4996 2.217847 GCTAACACACTACACACACACG 59.782 50.000 0.00 0.00 0.00 4.49
4677 4997 2.217847 CGCTAACACACTACACACACAC 59.782 50.000 0.00 0.00 0.00 3.82
4678 4998 2.159212 ACGCTAACACACTACACACACA 60.159 45.455 0.00 0.00 0.00 3.72
4679 4999 2.466846 ACGCTAACACACTACACACAC 58.533 47.619 0.00 0.00 0.00 3.82
4680 5000 2.875087 ACGCTAACACACTACACACA 57.125 45.000 0.00 0.00 0.00 3.72
4681 5001 4.147653 CAGTTACGCTAACACACTACACAC 59.852 45.833 9.51 0.00 41.07 3.82
4715 5035 9.121517 GATATAAATTCAGAATTCAATGTGGCG 57.878 33.333 8.90 0.00 0.00 5.69
4753 5073 5.073311 TCAACTAGGCAATACTCTGACAC 57.927 43.478 0.00 0.00 0.00 3.67
4804 5124 4.129317 ACTAGACCAGGGTAACAGACTT 57.871 45.455 0.00 0.00 39.74 3.01
4820 5140 5.825593 AGAGGAAAATGGTCACAACTAGA 57.174 39.130 0.00 0.00 0.00 2.43
4828 5148 8.383175 AGAACATAAACTAGAGGAAAATGGTCA 58.617 33.333 0.00 0.00 33.13 4.02
4829 5149 8.794335 AGAACATAAACTAGAGGAAAATGGTC 57.206 34.615 0.00 0.00 31.29 4.02
4830 5150 9.232473 GAAGAACATAAACTAGAGGAAAATGGT 57.768 33.333 0.00 0.00 0.00 3.55
4837 5157 9.219603 CACAAATGAAGAACATAAACTAGAGGA 57.780 33.333 0.00 0.00 38.38 3.71
5235 5561 4.688879 CGACAACACAATAGTCTGGCTTAA 59.311 41.667 0.00 0.00 0.00 1.85
5460 5787 2.691409 TCAAAGGGCCTCTGTTATCG 57.309 50.000 6.46 0.00 0.00 2.92
5540 6048 5.979517 CCAAACAGTTCAAGCCTCTTAAAAG 59.020 40.000 0.00 0.00 0.00 2.27
5542 6050 4.202111 GCCAAACAGTTCAAGCCTCTTAAA 60.202 41.667 0.00 0.00 0.00 1.52
5569 6077 5.928264 AGCCAAATGAAACATGAAAGTAAGC 59.072 36.000 0.00 0.00 0.00 3.09
5589 6598 9.733556 AACATTTACGAATTATATATGGAGCCA 57.266 29.630 0.00 0.00 0.00 4.75
5670 6679 7.119553 CCTGAAATTGAGAGAAAGAGGAGAAAG 59.880 40.741 0.00 0.00 0.00 2.62
5708 6717 1.133823 TCAGCACTTCTCCCTTGCAAA 60.134 47.619 0.00 0.00 38.81 3.68
5927 6936 2.264794 CTGCTGGTCGGGGTGTAC 59.735 66.667 0.00 0.00 0.00 2.90
5970 6979 1.115467 GACGGAGGGATGTGATGAGT 58.885 55.000 0.00 0.00 0.00 3.41
6035 7044 0.034186 CTGGGAAAGGTATGGCTGCA 60.034 55.000 0.50 0.00 0.00 4.41
6245 7254 4.816385 CCAGTACCCTTGTTATGCACATAG 59.184 45.833 0.00 0.00 34.43 2.23
6281 7290 4.579869 TCTTTGGAGAAGCACTACCATTC 58.420 43.478 0.00 0.00 32.31 2.67
6334 7343 0.884704 GCACTCTGGTTTTGCCTCGA 60.885 55.000 0.00 0.00 38.35 4.04
6380 7389 1.279496 TACCACCATTCTGCTGCTCT 58.721 50.000 0.00 0.00 0.00 4.09
6392 7401 2.357050 CCCAGCATTCTTCATACCACCA 60.357 50.000 0.00 0.00 0.00 4.17
6469 7481 3.577649 TCCTCGTCTCATGTTTCTGTC 57.422 47.619 0.00 0.00 0.00 3.51
6560 7572 6.973843 TCATTCATTTTCAAGACAACTCCAG 58.026 36.000 0.00 0.00 0.00 3.86
6562 7574 7.095899 GCTTTCATTCATTTTCAAGACAACTCC 60.096 37.037 0.00 0.00 0.00 3.85
6575 7587 8.922931 AAATTTAAGGTGGCTTTCATTCATTT 57.077 26.923 0.00 0.00 0.00 2.32
6587 7599 3.191791 TCGGCTACAAAATTTAAGGTGGC 59.808 43.478 13.79 13.79 37.06 5.01
6590 7603 5.180271 TCGATCGGCTACAAAATTTAAGGT 58.820 37.500 16.41 0.00 0.00 3.50
6591 7604 5.728351 TCGATCGGCTACAAAATTTAAGG 57.272 39.130 16.41 0.00 0.00 2.69
6670 7683 4.780021 ACATCTTAGCCCATACTCCCATAG 59.220 45.833 0.00 0.00 0.00 2.23
6708 7721 4.449068 CACGATAAGAACAGAACAAGCACT 59.551 41.667 0.00 0.00 0.00 4.40
6773 7786 2.679837 CACAGGCTTGCAACTCGATAAT 59.320 45.455 0.00 0.00 0.00 1.28
6776 7789 0.035317 TCACAGGCTTGCAACTCGAT 59.965 50.000 0.00 0.00 0.00 3.59
6822 7835 7.323420 GGGCTATATTTTCAGCTTGTCTTTTT 58.677 34.615 0.00 0.00 37.91 1.94
6823 7836 6.127338 GGGGCTATATTTTCAGCTTGTCTTTT 60.127 38.462 0.00 0.00 37.91 2.27
6824 7837 5.360999 GGGGCTATATTTTCAGCTTGTCTTT 59.639 40.000 0.00 0.00 37.91 2.52
6825 7838 4.889995 GGGGCTATATTTTCAGCTTGTCTT 59.110 41.667 0.00 0.00 37.91 3.01
6826 7839 4.464947 GGGGCTATATTTTCAGCTTGTCT 58.535 43.478 0.00 0.00 37.91 3.41
6827 7840 3.251004 CGGGGCTATATTTTCAGCTTGTC 59.749 47.826 0.00 0.00 37.91 3.18
6828 7841 3.214328 CGGGGCTATATTTTCAGCTTGT 58.786 45.455 0.00 0.00 37.91 3.16
6829 7842 2.030805 GCGGGGCTATATTTTCAGCTTG 60.031 50.000 0.00 0.00 37.91 4.01
6830 7843 2.158608 AGCGGGGCTATATTTTCAGCTT 60.159 45.455 0.00 0.00 36.99 3.74
6831 7844 1.421646 AGCGGGGCTATATTTTCAGCT 59.578 47.619 0.00 0.00 36.99 4.24
6832 7845 1.537202 CAGCGGGGCTATATTTTCAGC 59.463 52.381 0.00 0.00 36.40 4.26
6833 7846 3.126001 TCAGCGGGGCTATATTTTCAG 57.874 47.619 0.00 0.00 36.40 3.02
6834 7847 3.788227 ATCAGCGGGGCTATATTTTCA 57.212 42.857 0.00 0.00 36.40 2.69
6835 7848 3.821033 ACAATCAGCGGGGCTATATTTTC 59.179 43.478 0.00 0.00 36.40 2.29
6836 7849 3.832527 ACAATCAGCGGGGCTATATTTT 58.167 40.909 0.00 0.00 36.40 1.82
6837 7850 3.508845 ACAATCAGCGGGGCTATATTT 57.491 42.857 0.00 0.00 36.40 1.40
6838 7851 3.149196 CAACAATCAGCGGGGCTATATT 58.851 45.455 0.00 0.00 36.40 1.28
6839 7852 2.106511 ACAACAATCAGCGGGGCTATAT 59.893 45.455 0.00 0.00 36.40 0.86
6840 7853 1.488812 ACAACAATCAGCGGGGCTATA 59.511 47.619 0.00 0.00 36.40 1.31
6841 7854 0.255890 ACAACAATCAGCGGGGCTAT 59.744 50.000 0.00 0.00 36.40 2.97
6842 7855 0.037590 AACAACAATCAGCGGGGCTA 59.962 50.000 0.00 0.00 36.40 3.93
6843 7856 1.228552 AACAACAATCAGCGGGGCT 60.229 52.632 0.00 0.00 40.77 5.19
6844 7857 1.212751 GAACAACAATCAGCGGGGC 59.787 57.895 0.00 0.00 0.00 5.80
6845 7858 1.176527 ATGAACAACAATCAGCGGGG 58.823 50.000 0.00 0.00 0.00 5.73
6846 7859 2.598589 CAATGAACAACAATCAGCGGG 58.401 47.619 0.00 0.00 0.00 6.13
6847 7860 2.030007 ACCAATGAACAACAATCAGCGG 60.030 45.455 0.00 0.00 0.00 5.52
6848 7861 3.236816 GACCAATGAACAACAATCAGCG 58.763 45.455 0.00 0.00 0.00 5.18
6849 7862 3.578688 GGACCAATGAACAACAATCAGC 58.421 45.455 0.00 0.00 0.00 4.26
6850 7863 3.366273 CGGGACCAATGAACAACAATCAG 60.366 47.826 0.00 0.00 0.00 2.90
6851 7864 2.556189 CGGGACCAATGAACAACAATCA 59.444 45.455 0.00 0.00 0.00 2.57
6852 7865 2.817258 TCGGGACCAATGAACAACAATC 59.183 45.455 0.00 0.00 0.00 2.67
6853 7866 2.556622 GTCGGGACCAATGAACAACAAT 59.443 45.455 0.00 0.00 0.00 2.71
6854 7867 1.950909 GTCGGGACCAATGAACAACAA 59.049 47.619 0.00 0.00 0.00 2.83
6855 7868 1.142060 AGTCGGGACCAATGAACAACA 59.858 47.619 0.00 0.00 0.00 3.33
6856 7869 1.892209 AGTCGGGACCAATGAACAAC 58.108 50.000 0.00 0.00 0.00 3.32
6857 7870 2.901192 TCTAGTCGGGACCAATGAACAA 59.099 45.455 0.00 0.00 0.00 2.83
6858 7871 2.232941 GTCTAGTCGGGACCAATGAACA 59.767 50.000 0.00 0.00 0.00 3.18
6859 7872 2.496470 AGTCTAGTCGGGACCAATGAAC 59.504 50.000 0.00 0.00 34.56 3.18
6860 7873 2.816411 AGTCTAGTCGGGACCAATGAA 58.184 47.619 0.00 0.00 34.56 2.57
6861 7874 2.526888 AGTCTAGTCGGGACCAATGA 57.473 50.000 0.00 0.00 34.56 2.57
6862 7875 3.288964 ACTAGTCTAGTCGGGACCAATG 58.711 50.000 6.71 0.00 32.47 2.82
6863 7876 3.553904 GACTAGTCTAGTCGGGACCAAT 58.446 50.000 21.40 0.00 44.90 3.16
6864 7877 2.996631 GACTAGTCTAGTCGGGACCAA 58.003 52.381 21.40 0.00 44.90 3.67
6865 7878 2.706339 GACTAGTCTAGTCGGGACCA 57.294 55.000 21.40 0.00 44.90 4.02
6873 7886 7.172342 AGTTGAGATTCACAGACTAGTCTAGT 58.828 38.462 24.75 20.27 42.86 2.57
6874 7887 7.624360 AGTTGAGATTCACAGACTAGTCTAG 57.376 40.000 24.75 19.23 37.98 2.43
6875 7888 7.448777 ACAAGTTGAGATTCACAGACTAGTCTA 59.551 37.037 24.75 10.26 37.98 2.59
6876 7889 6.266558 ACAAGTTGAGATTCACAGACTAGTCT 59.733 38.462 20.00 20.00 41.37 3.24
6908 7921 1.852067 GACAAACAAGACGGCGGCAT 61.852 55.000 18.30 0.00 0.00 4.40
6910 7923 2.251371 GACAAACAAGACGGCGGC 59.749 61.111 13.24 8.92 0.00 6.53
6911 7924 2.943653 GGACAAACAAGACGGCGG 59.056 61.111 13.24 0.00 0.00 6.13
6912 7925 2.154427 GACGGACAAACAAGACGGCG 62.154 60.000 4.80 4.80 0.00 6.46
6946 7959 0.917533 AGATCAGCAACTGGGAGCAT 59.082 50.000 0.00 0.00 31.51 3.79
6947 7960 0.251354 GAGATCAGCAACTGGGAGCA 59.749 55.000 0.00 0.00 31.51 4.26
7035 8058 4.511454 TCGGACTGAAGAATTGAACACTTG 59.489 41.667 0.00 0.00 0.00 3.16
7039 8062 3.323691 TCCTCGGACTGAAGAATTGAACA 59.676 43.478 0.00 0.00 0.00 3.18
7047 8070 0.614697 TGGCATCCTCGGACTGAAGA 60.615 55.000 0.00 0.00 0.00 2.87
7048 8071 0.179089 CTGGCATCCTCGGACTGAAG 60.179 60.000 0.00 0.00 0.00 3.02
7049 8072 1.900351 CTGGCATCCTCGGACTGAA 59.100 57.895 0.00 0.00 0.00 3.02
7050 8073 2.725312 GCTGGCATCCTCGGACTGA 61.725 63.158 0.00 0.00 0.00 3.41
7051 8074 2.202987 GCTGGCATCCTCGGACTG 60.203 66.667 0.00 0.00 0.00 3.51
7052 8075 3.474570 GGCTGGCATCCTCGGACT 61.475 66.667 0.00 0.00 0.00 3.85
7053 8076 3.746949 CTGGCTGGCATCCTCGGAC 62.747 68.421 9.07 0.00 0.00 4.79
7054 8077 3.473647 CTGGCTGGCATCCTCGGA 61.474 66.667 9.07 0.00 0.00 4.55
7055 8078 4.559063 CCTGGCTGGCATCCTCGG 62.559 72.222 9.07 5.49 0.00 4.63
7056 8079 3.746949 GACCTGGCTGGCATCCTCG 62.747 68.421 10.71 1.04 40.22 4.63
7057 8080 2.191641 GACCTGGCTGGCATCCTC 59.808 66.667 10.71 0.00 40.22 3.71
7058 8081 3.415087 GGACCTGGCTGGCATCCT 61.415 66.667 14.62 0.00 40.22 3.24
7059 8082 4.512914 GGGACCTGGCTGGCATCC 62.513 72.222 13.78 13.78 40.22 3.51
7072 8095 3.759618 CGATGTTATCTAGGAGAGGGGAC 59.240 52.174 0.00 0.00 0.00 4.46
7073 8096 3.814676 GCGATGTTATCTAGGAGAGGGGA 60.815 52.174 0.00 0.00 0.00 4.81
7074 8097 2.494073 GCGATGTTATCTAGGAGAGGGG 59.506 54.545 0.00 0.00 0.00 4.79
7075 8098 2.494073 GGCGATGTTATCTAGGAGAGGG 59.506 54.545 0.00 0.00 0.00 4.30
7076 8099 3.426615 AGGCGATGTTATCTAGGAGAGG 58.573 50.000 0.00 0.00 0.00 3.69
7077 8100 3.442273 GGAGGCGATGTTATCTAGGAGAG 59.558 52.174 0.00 0.00 0.00 3.20
7149 8172 4.380531 TCAGCATTTCGTATCCATCCTTC 58.619 43.478 0.00 0.00 0.00 3.46
7195 8218 1.710013 TGTTGCGTAACTGAGCTAGC 58.290 50.000 17.37 6.62 37.68 3.42
7214 8237 8.109705 TGTGTAATGTGATTTGTAGCTTCATT 57.890 30.769 0.00 0.00 0.00 2.57
7232 8255 3.625764 GGTTATGCCGTGTCATGTGTAAT 59.374 43.478 0.00 0.00 0.00 1.89
7251 8278 0.734942 CGTGCTCGTGTAATCGGGTT 60.735 55.000 0.00 0.00 33.45 4.11
7276 8303 1.337167 TGAGGATCGTTGCTGACTGTG 60.337 52.381 0.00 0.00 38.61 3.66
7293 8320 2.091939 TCCTCCCTCTGATCTGTCTGAG 60.092 54.545 0.00 5.62 45.12 3.35
7299 8326 1.703411 GGACTCCTCCCTCTGATCTG 58.297 60.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.