Multiple sequence alignment - TraesCS4B01G229500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G229500 chr4B 100.000 4656 0 0 1 4656 480589359 480594014 0.000000e+00 8599.0
1 TraesCS4B01G229500 chr4A 89.031 2106 131 52 1844 3878 72294691 72296767 0.000000e+00 2518.0
2 TraesCS4B01G229500 chr4A 87.010 893 51 26 590 1439 72293423 72294293 0.000000e+00 946.0
3 TraesCS4B01G229500 chr4A 92.927 509 28 4 4152 4656 72296910 72297414 0.000000e+00 734.0
4 TraesCS4B01G229500 chr4A 85.902 610 29 22 1 592 72292593 72293163 8.620000e-167 597.0
5 TraesCS4B01G229500 chr4A 94.475 362 13 2 1445 1804 72294331 72294687 6.810000e-153 551.0
6 TraesCS4B01G229500 chr4D 88.230 2107 122 63 1844 3881 390598404 390600453 0.000000e+00 2401.0
7 TraesCS4B01G229500 chr4D 87.892 2106 122 61 2016 4082 390598617 390600628 0.000000e+00 2353.0
8 TraesCS4B01G229500 chr4D 88.808 1376 49 40 499 1820 390597096 390598420 0.000000e+00 1591.0
9 TraesCS4B01G229500 chr4D 95.644 505 21 1 4152 4656 390600642 390601145 0.000000e+00 809.0
10 TraesCS4B01G229500 chr4D 85.425 494 18 17 10 470 390596624 390597096 9.130000e-127 464.0
11 TraesCS4B01G229500 chr6B 81.107 307 28 16 1138 1439 84360283 84360564 7.840000e-53 219.0
12 TraesCS4B01G229500 chr6B 83.417 199 27 5 1531 1726 527043564 527043759 3.700000e-41 180.0
13 TraesCS4B01G229500 chr6B 85.185 81 12 0 1359 1439 527042620 527042700 2.990000e-12 84.2
14 TraesCS4B01G229500 chr5B 86.567 201 23 4 1531 1729 367212635 367212437 7.840000e-53 219.0
15 TraesCS4B01G229500 chr5B 77.814 311 27 17 1138 1442 14756749 14756475 2.240000e-33 154.0
16 TraesCS4B01G229500 chr5D 84.234 222 31 4 1531 1750 317453036 317452817 3.650000e-51 213.0
17 TraesCS4B01G229500 chr5A 84.234 222 31 4 1531 1750 412104199 412103980 3.650000e-51 213.0
18 TraesCS4B01G229500 chr2B 79.365 315 38 17 1138 1442 374241236 374240939 3.680000e-46 196.0
19 TraesCS4B01G229500 chr2B 79.672 305 31 16 1140 1439 61103530 61103808 1.710000e-44 191.0
20 TraesCS4B01G229500 chr6A 83.920 199 26 5 1531 1726 491027842 491028037 7.960000e-43 185.0
21 TraesCS4B01G229500 chr6A 85.185 81 12 0 1359 1439 491027083 491027163 2.990000e-12 84.2
22 TraesCS4B01G229500 chr6D 82.673 202 29 5 1531 1729 351970556 351970358 1.720000e-39 174.0
23 TraesCS4B01G229500 chr6D 86.420 81 11 0 1359 1439 351971288 351971208 6.420000e-14 89.8
24 TraesCS4B01G229500 chrUn 82.812 192 29 4 1537 1726 20367270 20367459 8.010000e-38 169.0
25 TraesCS4B01G229500 chr1D 86.250 80 11 0 1356 1435 282135995 282136074 2.310000e-13 87.9
26 TraesCS4B01G229500 chr1A 86.250 80 11 0 1356 1435 353914282 353914361 2.310000e-13 87.9
27 TraesCS4B01G229500 chr1B 85.000 80 12 0 1356 1435 383050641 383050720 1.070000e-11 82.4
28 TraesCS4B01G229500 chr7B 97.143 35 1 0 3196 3230 581373600 581373566 5.030000e-05 60.2
29 TraesCS4B01G229500 chr7A 97.143 35 1 0 3196 3230 620370571 620370537 5.030000e-05 60.2
30 TraesCS4B01G229500 chr7A 97.143 35 1 0 3196 3230 620487726 620487760 5.030000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G229500 chr4B 480589359 480594014 4655 False 8599.0 8599 100.0000 1 4656 1 chr4B.!!$F1 4655
1 TraesCS4B01G229500 chr4A 72292593 72297414 4821 False 1069.2 2518 89.8690 1 4656 5 chr4A.!!$F1 4655
2 TraesCS4B01G229500 chr4D 390596624 390601145 4521 False 1523.6 2401 89.1998 10 4656 5 chr4D.!!$F1 4646

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
205 233 0.181114 AATTGATGGCAGCGCTCCTA 59.819 50.0 21.36 7.16 0.00 2.94 F
358 400 0.391661 GCACACGATCATGGACCAGT 60.392 55.0 0.00 0.00 0.00 4.00 F
1439 1799 0.109873 CGTCGCCTTCTACGTGAGTT 60.110 55.0 0.00 0.00 46.40 3.01 F
1813 2213 0.160392 GATCGATCGACGCTGCATTG 59.840 55.0 22.06 0.00 42.26 2.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1241 1599 0.040246 GAACGGGAGGATCGATCGAC 60.040 60.0 22.06 14.0 34.37 4.20 R
1520 1918 0.107214 GGACATCTGCCGGAATCCAA 60.107 55.0 5.05 0.0 34.93 3.53 R
3178 3646 0.171455 TGCCCACACAAAAACGTCAC 59.829 50.0 0.00 0.0 0.00 3.67 R
3774 4276 0.606401 ATGCTGAACTGGTCAACCCG 60.606 55.0 0.00 0.0 35.22 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.598562 GTCTGTCTGTCTCGCTTCCA 59.401 55.000 0.00 0.00 0.00 3.53
42 43 1.805254 CTTCCATTTCAGGCCGCTG 59.195 57.895 0.00 0.00 0.00 5.18
95 101 2.745821 GGGAAAGCTACAAAACCTACCG 59.254 50.000 0.00 0.00 0.00 4.02
205 233 0.181114 AATTGATGGCAGCGCTCCTA 59.819 50.000 21.36 7.16 0.00 2.94
219 250 0.751452 CTCCTAGGAGTAAACCCCGC 59.249 60.000 28.12 0.00 37.47 6.13
223 254 0.397535 TAGGAGTAAACCCCGCCGAT 60.398 55.000 0.00 0.00 0.00 4.18
231 262 0.544697 AACCCCGCCGATACATTTCT 59.455 50.000 0.00 0.00 0.00 2.52
236 267 2.233922 CCCGCCGATACATTTCTAGGAT 59.766 50.000 0.00 0.00 0.00 3.24
337 379 1.006805 CGTCCGATCATCTGGCTCC 60.007 63.158 0.00 0.00 0.00 4.70
338 380 1.006805 GTCCGATCATCTGGCTCCG 60.007 63.158 0.00 0.00 0.00 4.63
341 383 2.824546 GATCATCTGGCTCCGGCA 59.175 61.111 0.00 0.00 40.87 5.69
342 384 1.596477 GATCATCTGGCTCCGGCAC 60.596 63.158 0.00 0.00 40.87 5.01
343 385 2.315781 GATCATCTGGCTCCGGCACA 62.316 60.000 0.00 0.00 40.87 4.57
344 386 2.599645 ATCATCTGGCTCCGGCACAC 62.600 60.000 0.00 0.00 40.87 3.82
345 387 4.457496 ATCTGGCTCCGGCACACG 62.457 66.667 0.00 0.00 40.87 4.49
355 397 3.813596 GGCACACGATCATGGACC 58.186 61.111 0.00 0.00 0.00 4.46
356 398 1.078497 GGCACACGATCATGGACCA 60.078 57.895 0.00 0.00 0.00 4.02
357 399 1.091771 GGCACACGATCATGGACCAG 61.092 60.000 0.00 0.00 0.00 4.00
358 400 0.391661 GCACACGATCATGGACCAGT 60.392 55.000 0.00 0.00 0.00 4.00
359 401 1.945819 GCACACGATCATGGACCAGTT 60.946 52.381 0.00 0.00 0.00 3.16
360 402 2.426522 CACACGATCATGGACCAGTTT 58.573 47.619 0.00 0.00 0.00 2.66
361 403 2.416547 CACACGATCATGGACCAGTTTC 59.583 50.000 0.00 0.00 0.00 2.78
362 404 2.009774 CACGATCATGGACCAGTTTCC 58.990 52.381 0.00 0.00 36.03 3.13
363 405 1.065418 ACGATCATGGACCAGTTTCCC 60.065 52.381 0.00 0.00 34.33 3.97
364 406 1.210478 CGATCATGGACCAGTTTCCCT 59.790 52.381 0.00 0.00 34.33 4.20
365 407 2.743183 CGATCATGGACCAGTTTCCCTC 60.743 54.545 0.00 0.00 34.33 4.30
366 408 1.741028 TCATGGACCAGTTTCCCTCA 58.259 50.000 0.00 0.00 34.33 3.86
367 409 1.351017 TCATGGACCAGTTTCCCTCAC 59.649 52.381 0.00 0.00 34.33 3.51
368 410 0.698818 ATGGACCAGTTTCCCTCACC 59.301 55.000 0.00 0.00 34.33 4.02
369 411 1.003718 GGACCAGTTTCCCTCACCG 60.004 63.158 0.00 0.00 0.00 4.94
473 515 1.096386 GCTTCCTCCTCATGCTGCAG 61.096 60.000 10.11 10.11 0.00 4.41
501 543 0.474184 CCCAGGCCCTTGGTAGTATG 59.526 60.000 10.03 0.00 36.45 2.39
502 544 1.213296 CCAGGCCCTTGGTAGTATGT 58.787 55.000 0.00 0.00 33.38 2.29
503 545 2.404559 CCAGGCCCTTGGTAGTATGTA 58.595 52.381 0.00 0.00 33.38 2.29
512 554 5.836898 CCCTTGGTAGTATGTAGTATGTGGA 59.163 44.000 0.00 0.00 0.00 4.02
541 583 2.362397 CAGCAGTATCAGTATGGACCGT 59.638 50.000 0.00 0.00 36.16 4.83
547 589 0.454600 TCAGTATGGACCGTTCGAGC 59.545 55.000 0.00 0.00 36.16 5.03
628 938 2.936928 CCGGAAAGGTTGTGGGTAC 58.063 57.895 0.00 0.00 34.51 3.34
629 939 0.399075 CCGGAAAGGTTGTGGGTACT 59.601 55.000 0.00 0.00 34.51 2.73
630 940 1.624813 CCGGAAAGGTTGTGGGTACTA 59.375 52.381 0.00 0.00 34.51 1.82
631 941 2.354403 CCGGAAAGGTTGTGGGTACTAG 60.354 54.545 0.00 0.00 34.51 2.57
632 942 2.301009 CGGAAAGGTTGTGGGTACTAGT 59.699 50.000 0.00 0.00 0.00 2.57
634 944 2.853235 AAGGTTGTGGGTACTAGTGC 57.147 50.000 5.39 3.50 0.00 4.40
635 945 2.025636 AGGTTGTGGGTACTAGTGCT 57.974 50.000 10.95 0.00 0.00 4.40
671 981 1.508632 CGAATTAATGACGGGGCGAT 58.491 50.000 7.22 0.00 0.00 4.58
703 1021 7.238710 GTTGGGTGGGATATATTTGGTTATCT 58.761 38.462 0.00 0.00 0.00 1.98
726 1044 2.573941 GCAATCAAGGCCTCAATCAC 57.426 50.000 5.23 0.00 0.00 3.06
774 1092 5.014202 GGGGTGGGCGTGATAATTAATTAT 58.986 41.667 18.55 18.55 35.77 1.28
879 1208 1.037030 TCCTTTGCAATCCATCGGCC 61.037 55.000 0.00 0.00 0.00 6.13
880 1209 1.039233 CCTTTGCAATCCATCGGCCT 61.039 55.000 0.00 0.00 0.00 5.19
881 1210 1.679139 CTTTGCAATCCATCGGCCTA 58.321 50.000 0.00 0.00 0.00 3.93
882 1211 1.605710 CTTTGCAATCCATCGGCCTAG 59.394 52.381 0.00 0.00 0.00 3.02
886 1215 1.941668 GCAATCCATCGGCCTAGTAGC 60.942 57.143 0.00 0.00 0.00 3.58
887 1216 0.603569 AATCCATCGGCCTAGTAGCG 59.396 55.000 0.00 0.00 0.00 4.26
958 1302 2.087857 ATAGAGGAGAGCGGAGGGGG 62.088 65.000 0.00 0.00 0.00 5.40
973 1317 1.002502 GGGGGTCAAGGAAGGAACG 60.003 63.158 0.00 0.00 0.00 3.95
977 1321 0.974383 GGTCAAGGAAGGAACGGAGA 59.026 55.000 0.00 0.00 0.00 3.71
993 1342 1.002792 AGAGGAGAAGCAGGGGAGG 59.997 63.158 0.00 0.00 0.00 4.30
1042 1391 4.361971 TCCTCCTGGCGTCGTCCT 62.362 66.667 0.00 0.00 0.00 3.85
1050 1399 2.126031 GCGTCGTCCTCTTGGGTC 60.126 66.667 0.00 0.00 36.25 4.46
1053 1402 2.282958 TCGTCCTCTTGGGTCGCT 60.283 61.111 0.00 0.00 44.13 4.93
1222 1580 4.394712 GTACGCACCCTGCTGGCT 62.395 66.667 3.63 0.00 42.25 4.75
1223 1581 4.393155 TACGCACCCTGCTGGCTG 62.393 66.667 3.63 2.01 42.25 4.85
1233 1591 3.060000 GCTGGCTGCTGTGCATCA 61.060 61.111 9.31 0.00 38.13 3.07
1241 1599 0.877213 TGCTGTGCATCATCGATCGG 60.877 55.000 16.41 0.00 31.71 4.18
1266 1624 0.179108 CGATCCTCCCGTTCTTGTCC 60.179 60.000 0.00 0.00 0.00 4.02
1267 1625 0.179108 GATCCTCCCGTTCTTGTCCG 60.179 60.000 0.00 0.00 0.00 4.79
1268 1626 1.614241 ATCCTCCCGTTCTTGTCCGG 61.614 60.000 0.00 0.00 43.82 5.14
1269 1627 2.580601 CCTCCCGTTCTTGTCCGGT 61.581 63.158 0.00 0.00 42.67 5.28
1270 1628 1.374252 CTCCCGTTCTTGTCCGGTG 60.374 63.158 0.00 0.00 42.67 4.94
1272 1630 2.280524 CCGTTCTTGTCCGGTGCA 60.281 61.111 0.00 0.00 39.38 4.57
1273 1631 2.604174 CCGTTCTTGTCCGGTGCAC 61.604 63.158 8.80 8.80 39.38 4.57
1275 1633 1.525077 GTTCTTGTCCGGTGCACCA 60.525 57.895 34.16 14.61 35.14 4.17
1276 1634 1.098712 GTTCTTGTCCGGTGCACCAA 61.099 55.000 34.16 19.96 35.14 3.67
1277 1635 0.817634 TTCTTGTCCGGTGCACCAAG 60.818 55.000 34.16 27.37 36.49 3.61
1278 1636 2.904866 TTGTCCGGTGCACCAAGC 60.905 61.111 34.16 22.24 45.96 4.01
1328 1688 3.780902 CCTCTGTTTGTTTGGTTGGTTC 58.219 45.455 0.00 0.00 0.00 3.62
1333 1693 2.235155 GTTTGTTTGGTTGGTTCCAGGT 59.765 45.455 0.00 0.00 38.80 4.00
1396 1756 2.180017 GCCAGCATCAAACTGCCG 59.820 61.111 0.00 0.00 43.33 5.69
1439 1799 0.109873 CGTCGCCTTCTACGTGAGTT 60.110 55.000 0.00 0.00 46.40 3.01
1440 1800 1.615502 GTCGCCTTCTACGTGAGTTC 58.384 55.000 0.00 0.00 46.40 3.01
1451 1843 3.736581 GTGAGTTCACGCTTCTTGC 57.263 52.632 0.00 0.00 37.10 4.01
1455 1847 2.223249 TGAGTTCACGCTTCTTGCAAAC 60.223 45.455 0.00 0.00 43.06 2.93
1456 1848 1.112459 GTTCACGCTTCTTGCAAACG 58.888 50.000 0.00 4.96 43.06 3.60
1464 1856 2.158841 GCTTCTTGCAAACGAACCGATA 59.841 45.455 0.00 0.00 42.31 2.92
1480 1872 5.637006 ACCGATATAATGCAGAGAGAGAC 57.363 43.478 0.00 0.00 0.00 3.36
1501 1899 3.181489 ACCGGCGAGAGAATTACTAACAG 60.181 47.826 9.30 0.00 0.00 3.16
1517 1915 1.538047 ACAGACTTTGGCATTGCGAT 58.462 45.000 1.91 0.00 0.00 4.58
1520 1918 0.447801 GACTTTGGCATTGCGATCGT 59.552 50.000 17.81 0.00 0.00 3.73
1698 2096 3.818121 CTGGTTCGACCCCACGCAA 62.818 63.158 0.00 0.00 37.50 4.85
1775 2173 1.142748 CCGCTCTCATCTCCACCAC 59.857 63.158 0.00 0.00 0.00 4.16
1779 2177 1.830477 GCTCTCATCTCCACCACTCTT 59.170 52.381 0.00 0.00 0.00 2.85
1804 2204 3.589061 ACTTACTCGTGATCGATCGAC 57.411 47.619 22.06 14.65 45.21 4.20
1805 2205 2.033917 ACTTACTCGTGATCGATCGACG 60.034 50.000 28.73 28.73 45.21 5.12
1806 2206 0.231534 TACTCGTGATCGATCGACGC 59.768 55.000 29.30 18.40 45.21 5.19
1807 2207 1.277142 CTCGTGATCGATCGACGCT 59.723 57.895 29.30 4.32 45.21 5.07
1808 2208 0.989315 CTCGTGATCGATCGACGCTG 60.989 60.000 29.30 23.25 45.21 5.18
1809 2209 2.630714 CGTGATCGATCGACGCTGC 61.631 63.158 25.87 11.33 42.26 5.25
1810 2210 1.586303 GTGATCGATCGACGCTGCA 60.586 57.895 22.06 10.78 42.26 4.41
1811 2211 0.936764 GTGATCGATCGACGCTGCAT 60.937 55.000 22.06 1.65 42.26 3.96
1812 2212 0.249031 TGATCGATCGACGCTGCATT 60.249 50.000 22.06 0.76 42.26 3.56
1813 2213 0.160392 GATCGATCGACGCTGCATTG 59.840 55.000 22.06 0.00 42.26 2.82
1814 2214 1.825285 ATCGATCGACGCTGCATTGC 61.825 55.000 22.06 0.46 42.26 3.56
1834 2234 3.266964 GCACGGCTGCAATTCTCA 58.733 55.556 0.50 0.00 43.62 3.27
1835 2235 1.136147 GCACGGCTGCAATTCTCAG 59.864 57.895 0.50 0.93 43.62 3.35
1836 2236 1.580845 GCACGGCTGCAATTCTCAGT 61.581 55.000 0.50 0.00 43.62 3.41
1837 2237 0.877071 CACGGCTGCAATTCTCAGTT 59.123 50.000 0.50 0.00 34.21 3.16
1838 2238 1.267806 CACGGCTGCAATTCTCAGTTT 59.732 47.619 0.50 0.00 34.21 2.66
1839 2239 1.956477 ACGGCTGCAATTCTCAGTTTT 59.044 42.857 0.50 0.00 34.21 2.43
1840 2240 2.030805 ACGGCTGCAATTCTCAGTTTTC 60.031 45.455 0.50 0.00 34.21 2.29
1841 2241 2.669391 CGGCTGCAATTCTCAGTTTTCC 60.669 50.000 0.50 0.00 34.21 3.13
1842 2242 2.297033 GGCTGCAATTCTCAGTTTTCCA 59.703 45.455 0.50 0.00 34.21 3.53
1888 2288 1.856265 CGGCCTGAACCTTGAACAGC 61.856 60.000 0.00 0.00 0.00 4.40
1978 2387 1.748122 CTGCAACAGCCCTAGCCAG 60.748 63.158 0.00 0.00 41.25 4.85
1984 2393 1.657804 ACAGCCCTAGCCAGTTACTT 58.342 50.000 0.00 0.00 41.25 2.24
1985 2394 1.555533 ACAGCCCTAGCCAGTTACTTC 59.444 52.381 0.00 0.00 41.25 3.01
1995 2404 2.808543 GCCAGTTACTTCACCTGACTTG 59.191 50.000 0.00 0.00 0.00 3.16
2005 2414 2.166459 TCACCTGACTTGGATTAGCTCG 59.834 50.000 0.00 0.00 0.00 5.03
2019 2428 3.710722 CTCGGCTTGCTCCAGGGT 61.711 66.667 0.00 0.00 0.00 4.34
2021 2430 2.282462 CGGCTTGCTCCAGGGTTT 60.282 61.111 0.00 0.00 0.00 3.27
2023 2432 0.608035 CGGCTTGCTCCAGGGTTTTA 60.608 55.000 0.00 0.00 0.00 1.52
2025 2434 1.967779 GGCTTGCTCCAGGGTTTTAAA 59.032 47.619 0.00 0.00 0.00 1.52
2026 2435 2.288825 GGCTTGCTCCAGGGTTTTAAAC 60.289 50.000 0.00 0.00 0.00 2.01
2027 2436 2.607038 GCTTGCTCCAGGGTTTTAAACG 60.607 50.000 1.52 0.00 0.00 3.60
2028 2437 2.642154 TGCTCCAGGGTTTTAAACGA 57.358 45.000 1.52 0.00 0.00 3.85
2029 2438 2.223745 TGCTCCAGGGTTTTAAACGAC 58.776 47.619 1.52 0.00 0.00 4.34
2030 2439 1.196127 GCTCCAGGGTTTTAAACGACG 59.804 52.381 1.52 0.00 0.00 5.12
2035 2475 3.065095 CCAGGGTTTTAAACGACGTTTCA 59.935 43.478 27.82 15.85 37.01 2.69
2079 2519 1.154205 CGTAGGCTGAATTCTGCGGG 61.154 60.000 25.26 13.54 41.04 6.13
2125 2565 1.578583 AGTGTGGTCGTGTACTTTGC 58.421 50.000 0.00 0.00 0.00 3.68
2127 2567 1.666700 GTGTGGTCGTGTACTTTGCAA 59.333 47.619 0.00 0.00 0.00 4.08
2177 2617 9.174166 ACGTAGCAAATTAATGATCCTTTAAGT 57.826 29.630 0.00 0.00 0.00 2.24
2294 2739 3.009723 TGGTAGTTCAGCTTAGCAATGC 58.990 45.455 7.07 0.00 0.00 3.56
2361 2808 4.443598 GCTGGTATTAGCTAGCTTCAGGTT 60.444 45.833 24.88 0.00 40.52 3.50
2366 2813 6.490721 GGTATTAGCTAGCTTCAGGTTCTCTA 59.509 42.308 24.88 0.00 0.00 2.43
2397 2844 2.441410 CTGCCTCTTTCCCTTTCCTTC 58.559 52.381 0.00 0.00 0.00 3.46
2544 2992 2.137177 ATAGCCTTGCCACAACGGGT 62.137 55.000 0.00 0.00 34.06 5.28
2647 3097 3.988976 TTCCTTCTTCCACCTGATCTG 57.011 47.619 0.00 0.00 0.00 2.90
2648 3098 2.191400 TCCTTCTTCCACCTGATCTGG 58.809 52.381 16.56 16.56 0.00 3.86
2668 3118 5.662657 TCTGGTTCAGATCACAGATCCATTA 59.337 40.000 10.95 3.71 35.39 1.90
2683 3133 1.321474 CATTAGCATGGCCCGAACAT 58.679 50.000 0.00 0.00 0.00 2.71
2685 3135 1.388547 TTAGCATGGCCCGAACATTC 58.611 50.000 0.00 0.00 0.00 2.67
2687 3137 0.396139 AGCATGGCCCGAACATTCAT 60.396 50.000 0.00 0.00 0.00 2.57
2688 3138 1.133823 AGCATGGCCCGAACATTCATA 60.134 47.619 0.00 0.00 0.00 2.15
2689 3139 1.680735 GCATGGCCCGAACATTCATAA 59.319 47.619 0.00 0.00 0.00 1.90
2690 3140 2.543653 GCATGGCCCGAACATTCATAAC 60.544 50.000 0.00 0.00 0.00 1.89
2691 3141 2.799126 TGGCCCGAACATTCATAACT 57.201 45.000 0.00 0.00 0.00 2.24
2692 3142 3.080300 TGGCCCGAACATTCATAACTT 57.920 42.857 0.00 0.00 0.00 2.66
2693 3143 2.752354 TGGCCCGAACATTCATAACTTG 59.248 45.455 0.00 0.00 0.00 3.16
2694 3144 2.099098 GGCCCGAACATTCATAACTTGG 59.901 50.000 0.00 0.00 0.00 3.61
2696 3146 2.687935 CCCGAACATTCATAACTTGGGG 59.312 50.000 0.00 0.00 0.00 4.96
2697 3147 3.352648 CCGAACATTCATAACTTGGGGT 58.647 45.455 0.00 0.00 0.00 4.95
2698 3148 3.761752 CCGAACATTCATAACTTGGGGTT 59.238 43.478 0.00 0.00 41.54 4.11
2700 3150 4.436852 CGAACATTCATAACTTGGGGTTCG 60.437 45.833 8.82 8.82 41.82 3.95
2701 3151 3.352648 ACATTCATAACTTGGGGTTCGG 58.647 45.455 0.00 0.00 39.17 4.30
2702 3152 2.500392 TTCATAACTTGGGGTTCGGG 57.500 50.000 0.00 0.00 39.17 5.14
2703 3153 0.621609 TCATAACTTGGGGTTCGGGG 59.378 55.000 0.00 0.00 39.17 5.73
2704 3154 0.395173 CATAACTTGGGGTTCGGGGG 60.395 60.000 0.00 0.00 39.17 5.40
2705 3155 0.847758 ATAACTTGGGGTTCGGGGGT 60.848 55.000 0.00 0.00 39.17 4.95
2706 3156 1.781153 TAACTTGGGGTTCGGGGGTG 61.781 60.000 0.00 0.00 39.17 4.61
2710 3160 4.607025 GGGGTTCGGGGGTGCAAA 62.607 66.667 0.00 0.00 0.00 3.68
2711 3161 2.522193 GGGTTCGGGGGTGCAAAA 60.522 61.111 0.00 0.00 0.00 2.44
2718 3168 1.094785 CGGGGGTGCAAAATACTCAG 58.905 55.000 0.00 0.00 0.00 3.35
2724 3174 3.437049 GGGTGCAAAATACTCAGAGTCAC 59.563 47.826 6.27 7.76 0.00 3.67
2725 3175 4.065088 GGTGCAAAATACTCAGAGTCACA 58.935 43.478 6.27 0.00 0.00 3.58
2737 3187 2.904011 GAGTCACACACTCCTACTCG 57.096 55.000 0.00 0.00 45.47 4.18
2740 3190 0.881796 TCACACACTCCTACTCGCAG 59.118 55.000 0.00 0.00 0.00 5.18
2741 3191 0.598562 CACACACTCCTACTCGCAGT 59.401 55.000 0.00 0.00 0.00 4.40
2742 3192 0.882474 ACACACTCCTACTCGCAGTC 59.118 55.000 0.00 0.00 0.00 3.51
2743 3193 0.881796 CACACTCCTACTCGCAGTCA 59.118 55.000 0.00 0.00 0.00 3.41
2762 3214 0.321346 ACACTGCATGATCGTGTGGA 59.679 50.000 16.18 2.05 40.11 4.02
2829 3288 1.409241 CCATCCATCCACTGAACCTGG 60.409 57.143 0.00 0.00 0.00 4.45
2921 3381 0.962356 CCGCTGCCTTTTCCTCATGT 60.962 55.000 0.00 0.00 0.00 3.21
2967 3427 0.392706 ACCTGTGTGATCACTCGCAA 59.607 50.000 25.55 2.94 43.21 4.85
3007 3467 1.742308 TGGGGAAGAAAGCTACCACT 58.258 50.000 0.00 0.00 0.00 4.00
3011 3474 2.570302 GGGAAGAAAGCTACCACTACCA 59.430 50.000 0.00 0.00 0.00 3.25
3045 3508 0.235665 CGTGCGTTTTCACATGAGCT 59.764 50.000 0.00 0.00 36.80 4.09
3049 3512 2.225491 TGCGTTTTCACATGAGCTAACC 59.775 45.455 0.00 0.00 0.00 2.85
3089 3557 2.811431 CGTTCACATGCCCAAAGTCTAA 59.189 45.455 0.00 0.00 0.00 2.10
3097 3565 5.539955 ACATGCCCAAAGTCTAATTTTCACT 59.460 36.000 0.00 0.00 0.00 3.41
3132 3600 2.741517 CGTGAATGTGCTGTGTTGGATA 59.258 45.455 0.00 0.00 0.00 2.59
3143 3611 4.142600 GCTGTGTTGGATACTTGGATTGAC 60.143 45.833 0.00 0.00 37.61 3.18
3153 3621 1.739466 CTTGGATTGACGGTGTGGATG 59.261 52.381 0.00 0.00 0.00 3.51
3156 3624 1.339631 GGATTGACGGTGTGGATGGAA 60.340 52.381 0.00 0.00 0.00 3.53
3194 3674 3.362295 CTGATGTGACGTTTTTGTGTGG 58.638 45.455 0.00 0.00 0.00 4.17
3659 4158 1.703411 GGACTCCTCCCTCTGATCTG 58.297 60.000 0.00 0.00 0.00 2.90
3665 4164 2.091939 TCCTCCCTCTGATCTGTCTGAG 60.092 54.545 0.00 5.62 45.12 3.35
3682 4181 1.337167 TGAGGATCGTTGCTGACTGTG 60.337 52.381 0.00 0.00 38.61 3.66
3707 4206 0.734942 CGTGCTCGTGTAATCGGGTT 60.735 55.000 0.00 0.00 33.45 4.11
3726 4225 3.625764 GGTTATGCCGTGTCATGTGTAAT 59.374 43.478 0.00 0.00 0.00 1.89
3744 4246 8.109705 TGTGTAATGTGATTTGTAGCTTCATT 57.890 30.769 0.00 0.00 0.00 2.57
3763 4265 1.710013 TGTTGCGTAACTGAGCTAGC 58.290 50.000 17.37 6.62 37.68 3.42
3809 4311 4.380531 TCAGCATTTCGTATCCATCCTTC 58.619 43.478 0.00 0.00 0.00 3.46
3881 4383 3.442273 GGAGGCGATGTTATCTAGGAGAG 59.558 52.174 0.00 0.00 0.00 3.20
3882 4384 3.426615 AGGCGATGTTATCTAGGAGAGG 58.573 50.000 0.00 0.00 0.00 3.69
3883 4385 2.494073 GGCGATGTTATCTAGGAGAGGG 59.506 54.545 0.00 0.00 0.00 4.30
3884 4386 2.494073 GCGATGTTATCTAGGAGAGGGG 59.506 54.545 0.00 0.00 0.00 4.79
3885 4387 3.814676 GCGATGTTATCTAGGAGAGGGGA 60.815 52.174 0.00 0.00 0.00 4.81
3886 4388 3.759618 CGATGTTATCTAGGAGAGGGGAC 59.240 52.174 0.00 0.00 0.00 4.46
3899 4401 4.512914 GGGACCTGGCTGGCATCC 62.513 72.222 13.78 13.78 40.22 3.51
3900 4402 3.415087 GGACCTGGCTGGCATCCT 61.415 66.667 14.62 0.00 40.22 3.24
3901 4403 2.191641 GACCTGGCTGGCATCCTC 59.808 66.667 10.71 0.00 40.22 3.71
3902 4404 3.746949 GACCTGGCTGGCATCCTCG 62.747 68.421 10.71 1.04 40.22 4.63
3903 4405 4.559063 CCTGGCTGGCATCCTCGG 62.559 72.222 9.07 5.49 0.00 4.63
3904 4406 3.473647 CTGGCTGGCATCCTCGGA 61.474 66.667 9.07 0.00 0.00 4.55
3905 4407 3.746949 CTGGCTGGCATCCTCGGAC 62.747 68.421 9.07 0.00 0.00 4.79
3906 4408 3.474570 GGCTGGCATCCTCGGACT 61.475 66.667 0.00 0.00 0.00 3.85
3907 4409 2.202987 GCTGGCATCCTCGGACTG 60.203 66.667 0.00 0.00 0.00 3.51
3908 4410 2.725312 GCTGGCATCCTCGGACTGA 61.725 63.158 0.00 0.00 0.00 3.41
3909 4411 1.900351 CTGGCATCCTCGGACTGAA 59.100 57.895 0.00 0.00 0.00 3.02
3910 4412 0.179089 CTGGCATCCTCGGACTGAAG 60.179 60.000 0.00 0.00 0.00 3.02
3911 4413 0.614697 TGGCATCCTCGGACTGAAGA 60.615 55.000 0.00 0.00 0.00 2.87
3919 4421 3.323691 TCCTCGGACTGAAGAATTGAACA 59.676 43.478 0.00 0.00 0.00 3.18
3923 4425 4.511454 TCGGACTGAAGAATTGAACACTTG 59.489 41.667 0.00 0.00 0.00 3.16
4013 4525 2.103771 GAGATCAGCAACTGGGAGCATA 59.896 50.000 0.00 0.00 31.51 3.14
4014 4526 2.709934 AGATCAGCAACTGGGAGCATAT 59.290 45.455 0.00 0.00 31.51 1.78
4046 4558 2.154427 GACGGACAAACAAGACGGCG 62.154 60.000 4.80 4.80 0.00 6.46
4047 4559 2.943653 GGACAAACAAGACGGCGG 59.056 61.111 13.24 0.00 0.00 6.13
4048 4560 2.251371 GACAAACAAGACGGCGGC 59.749 61.111 13.24 8.92 0.00 6.53
4049 4561 2.515057 ACAAACAAGACGGCGGCA 60.515 55.556 18.30 0.00 0.00 5.69
4050 4562 1.852067 GACAAACAAGACGGCGGCAT 61.852 55.000 18.30 0.00 0.00 4.40
4082 4594 6.266558 ACAAGTTGAGATTCACAGACTAGTCT 59.733 38.462 20.00 20.00 41.37 3.24
4083 4595 7.448777 ACAAGTTGAGATTCACAGACTAGTCTA 59.551 37.037 24.75 10.26 37.98 2.59
4085 4597 7.172342 AGTTGAGATTCACAGACTAGTCTAGT 58.828 38.462 24.75 20.27 42.86 2.57
4093 4605 2.706339 GACTAGTCTAGTCGGGACCA 57.294 55.000 21.40 0.00 44.90 4.02
4094 4606 2.996631 GACTAGTCTAGTCGGGACCAA 58.003 52.381 21.40 0.00 44.90 3.67
4095 4607 3.553904 GACTAGTCTAGTCGGGACCAAT 58.446 50.000 21.40 0.00 44.90 3.16
4096 4608 3.288964 ACTAGTCTAGTCGGGACCAATG 58.711 50.000 6.71 0.00 32.47 2.82
4097 4609 2.526888 AGTCTAGTCGGGACCAATGA 57.473 50.000 0.00 0.00 34.56 2.57
4098 4610 2.816411 AGTCTAGTCGGGACCAATGAA 58.184 47.619 0.00 0.00 34.56 2.57
4099 4611 2.496470 AGTCTAGTCGGGACCAATGAAC 59.504 50.000 0.00 0.00 34.56 3.18
4100 4612 2.232941 GTCTAGTCGGGACCAATGAACA 59.767 50.000 0.00 0.00 0.00 3.18
4101 4613 2.901192 TCTAGTCGGGACCAATGAACAA 59.099 45.455 0.00 0.00 0.00 2.83
4102 4614 1.892209 AGTCGGGACCAATGAACAAC 58.108 50.000 0.00 0.00 0.00 3.32
4103 4615 1.142060 AGTCGGGACCAATGAACAACA 59.858 47.619 0.00 0.00 0.00 3.33
4104 4616 1.950909 GTCGGGACCAATGAACAACAA 59.049 47.619 0.00 0.00 0.00 2.83
4105 4617 2.556622 GTCGGGACCAATGAACAACAAT 59.443 45.455 0.00 0.00 0.00 2.71
4106 4618 2.817258 TCGGGACCAATGAACAACAATC 59.183 45.455 0.00 0.00 0.00 2.67
4107 4619 2.556189 CGGGACCAATGAACAACAATCA 59.444 45.455 0.00 0.00 0.00 2.57
4108 4620 3.366273 CGGGACCAATGAACAACAATCAG 60.366 47.826 0.00 0.00 0.00 2.90
4109 4621 3.578688 GGACCAATGAACAACAATCAGC 58.421 45.455 0.00 0.00 0.00 4.26
4110 4622 3.236816 GACCAATGAACAACAATCAGCG 58.763 45.455 0.00 0.00 0.00 5.18
4111 4623 2.030007 ACCAATGAACAACAATCAGCGG 60.030 45.455 0.00 0.00 0.00 5.52
4112 4624 2.598589 CAATGAACAACAATCAGCGGG 58.401 47.619 0.00 0.00 0.00 6.13
4113 4625 1.176527 ATGAACAACAATCAGCGGGG 58.823 50.000 0.00 0.00 0.00 5.73
4114 4626 1.212751 GAACAACAATCAGCGGGGC 59.787 57.895 0.00 0.00 0.00 5.80
4115 4627 1.228552 AACAACAATCAGCGGGGCT 60.229 52.632 0.00 0.00 40.77 5.19
4116 4628 0.037590 AACAACAATCAGCGGGGCTA 59.962 50.000 0.00 0.00 36.40 3.93
4117 4629 0.255890 ACAACAATCAGCGGGGCTAT 59.744 50.000 0.00 0.00 36.40 2.97
4118 4630 1.488812 ACAACAATCAGCGGGGCTATA 59.511 47.619 0.00 0.00 36.40 1.31
4119 4631 2.106511 ACAACAATCAGCGGGGCTATAT 59.893 45.455 0.00 0.00 36.40 0.86
4120 4632 3.149196 CAACAATCAGCGGGGCTATATT 58.851 45.455 0.00 0.00 36.40 1.28
4121 4633 3.508845 ACAATCAGCGGGGCTATATTT 57.491 42.857 0.00 0.00 36.40 1.40
4122 4634 3.832527 ACAATCAGCGGGGCTATATTTT 58.167 40.909 0.00 0.00 36.40 1.82
4123 4635 3.821033 ACAATCAGCGGGGCTATATTTTC 59.179 43.478 0.00 0.00 36.40 2.29
4124 4636 3.788227 ATCAGCGGGGCTATATTTTCA 57.212 42.857 0.00 0.00 36.40 2.69
4125 4637 3.126001 TCAGCGGGGCTATATTTTCAG 57.874 47.619 0.00 0.00 36.40 3.02
4126 4638 1.537202 CAGCGGGGCTATATTTTCAGC 59.463 52.381 0.00 0.00 36.40 4.26
4127 4639 1.421646 AGCGGGGCTATATTTTCAGCT 59.578 47.619 0.00 0.00 36.99 4.24
4128 4640 2.158608 AGCGGGGCTATATTTTCAGCTT 60.159 45.455 0.00 0.00 36.99 3.74
4129 4641 2.030805 GCGGGGCTATATTTTCAGCTTG 60.031 50.000 0.00 0.00 37.91 4.01
4130 4642 3.214328 CGGGGCTATATTTTCAGCTTGT 58.786 45.455 0.00 0.00 37.91 3.16
4131 4643 3.251004 CGGGGCTATATTTTCAGCTTGTC 59.749 47.826 0.00 0.00 37.91 3.18
4132 4644 4.464947 GGGGCTATATTTTCAGCTTGTCT 58.535 43.478 0.00 0.00 37.91 3.41
4133 4645 4.889995 GGGGCTATATTTTCAGCTTGTCTT 59.110 41.667 0.00 0.00 37.91 3.01
4134 4646 5.360999 GGGGCTATATTTTCAGCTTGTCTTT 59.639 40.000 0.00 0.00 37.91 2.52
4135 4647 6.127338 GGGGCTATATTTTCAGCTTGTCTTTT 60.127 38.462 0.00 0.00 37.91 2.27
4136 4648 7.323420 GGGCTATATTTTCAGCTTGTCTTTTT 58.677 34.615 0.00 0.00 37.91 1.94
4182 4694 0.035317 TCACAGGCTTGCAACTCGAT 59.965 50.000 0.00 0.00 0.00 3.59
4185 4697 2.679837 CACAGGCTTGCAACTCGATAAT 59.320 45.455 0.00 0.00 0.00 1.28
4250 4762 4.449068 CACGATAAGAACAGAACAAGCACT 59.551 41.667 0.00 0.00 0.00 4.40
4288 4800 4.780021 ACATCTTAGCCCATACTCCCATAG 59.220 45.833 0.00 0.00 0.00 2.23
4367 4879 5.728351 TCGATCGGCTACAAAATTTAAGG 57.272 39.130 16.41 0.00 0.00 2.69
4368 4880 5.180271 TCGATCGGCTACAAAATTTAAGGT 58.820 37.500 16.41 0.00 0.00 3.50
4371 4884 3.191791 TCGGCTACAAAATTTAAGGTGGC 59.808 43.478 13.79 13.79 37.06 5.01
4383 4896 8.922931 AAATTTAAGGTGGCTTTCATTCATTT 57.077 26.923 0.00 0.00 0.00 2.32
4396 4909 7.095899 GCTTTCATTCATTTTCAAGACAACTCC 60.096 37.037 0.00 0.00 0.00 3.85
4398 4911 6.973843 TCATTCATTTTCAAGACAACTCCAG 58.026 36.000 0.00 0.00 0.00 3.86
4489 5002 3.577649 TCCTCGTCTCATGTTTCTGTC 57.422 47.619 0.00 0.00 0.00 3.51
4566 5082 2.357050 CCCAGCATTCTTCATACCACCA 60.357 50.000 0.00 0.00 0.00 4.17
4578 5094 1.279496 TACCACCATTCTGCTGCTCT 58.721 50.000 0.00 0.00 0.00 4.09
4624 5140 0.884704 GCACTCTGGTTTTGCCTCGA 60.885 55.000 0.00 0.00 38.35 4.04
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.315251 CGAGACAGACAGACAGGCAA 59.685 55.000 0.00 0.00 0.00 4.52
29 30 0.107017 AGTATGCAGCGGCCTGAAAT 60.107 50.000 6.32 0.00 41.77 2.17
42 43 0.530744 TCGTGTGGGAGTGAGTATGC 59.469 55.000 0.00 0.00 0.00 3.14
138 161 0.754217 GGAAATTTAGGGGGCGGACC 60.754 60.000 0.00 0.00 39.11 4.46
205 233 0.397535 TATCGGCGGGGTTTACTCCT 60.398 55.000 7.21 0.00 0.00 3.69
219 250 4.677250 GCCGGTATCCTAGAAATGTATCGG 60.677 50.000 1.90 0.00 36.18 4.18
223 254 2.029649 GCGCCGGTATCCTAGAAATGTA 60.030 50.000 1.90 0.00 0.00 2.29
337 379 2.173669 GGTCCATGATCGTGTGCCG 61.174 63.158 13.81 0.00 38.13 5.69
338 380 1.078497 TGGTCCATGATCGTGTGCC 60.078 57.895 13.81 14.27 0.00 5.01
341 383 2.615493 GGAAACTGGTCCATGATCGTGT 60.615 50.000 13.81 0.00 37.65 4.49
342 384 2.009774 GGAAACTGGTCCATGATCGTG 58.990 52.381 8.03 8.03 37.65 4.35
343 385 1.065418 GGGAAACTGGTCCATGATCGT 60.065 52.381 0.00 0.00 39.70 3.73
344 386 1.210478 AGGGAAACTGGTCCATGATCG 59.790 52.381 0.00 0.00 39.70 3.69
345 387 2.239654 TGAGGGAAACTGGTCCATGATC 59.760 50.000 0.00 0.00 39.70 2.92
346 388 2.025887 GTGAGGGAAACTGGTCCATGAT 60.026 50.000 0.00 0.00 39.70 2.45
347 389 1.351017 GTGAGGGAAACTGGTCCATGA 59.649 52.381 0.00 0.00 39.70 3.07
349 391 0.698818 GGTGAGGGAAACTGGTCCAT 59.301 55.000 0.00 0.00 39.70 3.41
350 392 1.764571 CGGTGAGGGAAACTGGTCCA 61.765 60.000 0.00 0.00 39.70 4.02
351 393 1.003718 CGGTGAGGGAAACTGGTCC 60.004 63.158 0.00 0.00 36.90 4.46
352 394 0.320508 GTCGGTGAGGGAAACTGGTC 60.321 60.000 0.00 0.00 0.00 4.02
353 395 1.752833 GTCGGTGAGGGAAACTGGT 59.247 57.895 0.00 0.00 0.00 4.00
354 396 1.374252 CGTCGGTGAGGGAAACTGG 60.374 63.158 0.00 0.00 0.00 4.00
355 397 0.032952 TTCGTCGGTGAGGGAAACTG 59.967 55.000 0.00 0.00 0.00 3.16
356 398 0.974383 ATTCGTCGGTGAGGGAAACT 59.026 50.000 0.00 0.00 0.00 2.66
357 399 2.265683 GTATTCGTCGGTGAGGGAAAC 58.734 52.381 0.00 0.00 0.00 2.78
358 400 1.135315 CGTATTCGTCGGTGAGGGAAA 60.135 52.381 0.00 0.00 0.00 3.13
359 401 0.452987 CGTATTCGTCGGTGAGGGAA 59.547 55.000 0.00 0.00 0.00 3.97
360 402 0.392863 TCGTATTCGTCGGTGAGGGA 60.393 55.000 0.00 0.00 38.33 4.20
361 403 0.666913 ATCGTATTCGTCGGTGAGGG 59.333 55.000 0.00 0.00 38.33 4.30
362 404 1.599667 CCATCGTATTCGTCGGTGAGG 60.600 57.143 0.12 0.00 41.20 3.86
363 405 1.755161 CCATCGTATTCGTCGGTGAG 58.245 55.000 0.12 0.00 41.20 3.51
364 406 0.248743 GCCATCGTATTCGTCGGTGA 60.249 55.000 0.12 0.00 41.20 4.02
365 407 0.248907 AGCCATCGTATTCGTCGGTG 60.249 55.000 0.00 0.00 38.86 4.94
366 408 0.458669 AAGCCATCGTATTCGTCGGT 59.541 50.000 0.00 0.00 38.33 4.69
367 409 1.129326 GAAGCCATCGTATTCGTCGG 58.871 55.000 0.00 0.00 38.33 4.79
368 410 0.770590 CGAAGCCATCGTATTCGTCG 59.229 55.000 1.56 0.00 46.52 5.12
454 496 1.077930 TGCAGCATGAGGAGGAAGC 60.078 57.895 0.00 0.00 39.69 3.86
492 534 5.301045 GCACTCCACATACTACATACTACCA 59.699 44.000 0.00 0.00 0.00 3.25
495 537 6.262496 GTCAGCACTCCACATACTACATACTA 59.738 42.308 0.00 0.00 0.00 1.82
501 543 3.775202 CTGTCAGCACTCCACATACTAC 58.225 50.000 0.00 0.00 0.00 2.73
502 544 2.166459 GCTGTCAGCACTCCACATACTA 59.834 50.000 20.16 0.00 41.89 1.82
503 545 1.066573 GCTGTCAGCACTCCACATACT 60.067 52.381 20.16 0.00 41.89 2.12
626 936 6.869206 AATCAAAACCCTAGAGCACTAGTA 57.131 37.500 15.80 0.00 43.10 1.82
627 937 5.763876 AATCAAAACCCTAGAGCACTAGT 57.236 39.130 15.80 0.00 43.10 2.57
628 938 5.163713 GCAAATCAAAACCCTAGAGCACTAG 60.164 44.000 10.92 10.92 43.93 2.57
629 939 4.700213 GCAAATCAAAACCCTAGAGCACTA 59.300 41.667 0.00 0.00 0.00 2.74
630 940 3.507622 GCAAATCAAAACCCTAGAGCACT 59.492 43.478 0.00 0.00 0.00 4.40
631 941 3.670627 CGCAAATCAAAACCCTAGAGCAC 60.671 47.826 0.00 0.00 0.00 4.40
632 942 2.487762 CGCAAATCAAAACCCTAGAGCA 59.512 45.455 0.00 0.00 0.00 4.26
634 944 5.567138 ATTCGCAAATCAAAACCCTAGAG 57.433 39.130 0.00 0.00 0.00 2.43
635 945 5.975693 AATTCGCAAATCAAAACCCTAGA 57.024 34.783 0.00 0.00 0.00 2.43
671 981 7.237982 CAAATATATCCCACCCAACCATTCTA 58.762 38.462 0.00 0.00 0.00 2.10
726 1044 7.385205 CCAATTACTTAGACAGGATCCGTATTG 59.615 40.741 5.98 11.15 0.00 1.90
803 1126 1.139058 ACCTCACAGTTTTGAGCGAGT 59.861 47.619 0.00 0.00 41.61 4.18
880 1209 1.873069 GCCTCGTCTCTAGCGCTACTA 60.873 57.143 14.45 3.66 0.00 1.82
881 1210 1.161563 GCCTCGTCTCTAGCGCTACT 61.162 60.000 14.45 0.00 0.00 2.57
882 1211 1.280444 GCCTCGTCTCTAGCGCTAC 59.720 63.158 14.45 5.37 0.00 3.58
887 1216 0.531090 TCTCTCGCCTCGTCTCTAGC 60.531 60.000 0.00 0.00 0.00 3.42
958 1302 0.974383 TCTCCGTTCCTTCCTTGACC 59.026 55.000 0.00 0.00 0.00 4.02
962 1306 1.077334 TCTCCTCTCCGTTCCTTCCTT 59.923 52.381 0.00 0.00 0.00 3.36
973 1317 1.002274 TCCCCTGCTTCTCCTCTCC 59.998 63.158 0.00 0.00 0.00 3.71
977 1321 2.041928 CCCTCCCCTGCTTCTCCT 59.958 66.667 0.00 0.00 0.00 3.69
1006 1355 2.436824 GGCCAAGAGGAAGCGACC 60.437 66.667 0.00 0.00 36.89 4.79
1042 1391 4.373116 GGACGCAGCGACCCAAGA 62.373 66.667 24.65 0.00 35.86 3.02
1219 1577 1.164662 ATCGATGATGCACAGCAGCC 61.165 55.000 0.00 0.00 44.94 4.85
1220 1578 0.235144 GATCGATGATGCACAGCAGC 59.765 55.000 0.54 0.00 45.81 5.25
1221 1579 0.507358 CGATCGATGATGCACAGCAG 59.493 55.000 10.26 0.00 43.65 4.24
1222 1580 0.877213 CCGATCGATGATGCACAGCA 60.877 55.000 18.66 0.00 44.86 4.41
1223 1581 0.877649 ACCGATCGATGATGCACAGC 60.878 55.000 18.66 0.00 0.00 4.40
1224 1582 1.135046 GACCGATCGATGATGCACAG 58.865 55.000 18.66 0.00 0.00 3.66
1225 1583 3.272766 GACCGATCGATGATGCACA 57.727 52.632 18.66 0.00 0.00 4.57
1241 1599 0.040246 GAACGGGAGGATCGATCGAC 60.040 60.000 22.06 14.00 34.37 4.20
1390 1750 4.112341 GCGTAGTCGGACGGCAGT 62.112 66.667 14.12 0.00 43.13 4.40
1443 1803 0.306533 TCGGTTCGTTTGCAAGAAGC 59.693 50.000 16.50 16.50 45.96 3.86
1451 1843 5.462068 TCTCTGCATTATATCGGTTCGTTTG 59.538 40.000 0.00 0.00 0.00 2.93
1455 1847 5.048153 TCTCTCTGCATTATATCGGTTCG 57.952 43.478 0.00 0.00 0.00 3.95
1456 1848 6.090129 GTCTCTCTCTGCATTATATCGGTTC 58.910 44.000 0.00 0.00 0.00 3.62
1464 1856 1.342819 GCCGGTCTCTCTCTGCATTAT 59.657 52.381 1.90 0.00 0.00 1.28
1480 1872 3.066342 TCTGTTAGTAATTCTCTCGCCGG 59.934 47.826 0.00 0.00 0.00 6.13
1501 1899 0.447801 ACGATCGCAATGCCAAAGTC 59.552 50.000 16.60 0.00 0.00 3.01
1517 1915 0.461870 CATCTGCCGGAATCCAACGA 60.462 55.000 5.05 0.00 0.00 3.85
1520 1918 0.107214 GGACATCTGCCGGAATCCAA 60.107 55.000 5.05 0.00 34.93 3.53
1775 2173 7.231705 TCGATCACGAGTAAGTAAGTAAGAG 57.768 40.000 0.00 0.00 43.81 2.85
1818 2218 0.877071 AACTGAGAATTGCAGCCGTG 59.123 50.000 5.13 0.00 36.86 4.94
1819 2219 1.609208 AAACTGAGAATTGCAGCCGT 58.391 45.000 5.13 0.00 36.86 5.68
1820 2220 2.589014 GAAAACTGAGAATTGCAGCCG 58.411 47.619 5.13 0.00 36.86 5.52
1821 2221 2.297033 TGGAAAACTGAGAATTGCAGCC 59.703 45.455 5.13 0.00 36.86 4.85
1822 2222 3.648339 TGGAAAACTGAGAATTGCAGC 57.352 42.857 5.13 0.00 36.86 5.25
1823 2223 4.741676 GTGTTGGAAAACTGAGAATTGCAG 59.258 41.667 3.92 3.92 39.26 4.41
1824 2224 4.402155 AGTGTTGGAAAACTGAGAATTGCA 59.598 37.500 0.00 0.00 0.00 4.08
1825 2225 4.741676 CAGTGTTGGAAAACTGAGAATTGC 59.258 41.667 3.91 0.00 45.43 3.56
1826 2226 4.741676 GCAGTGTTGGAAAACTGAGAATTG 59.258 41.667 13.01 0.00 45.43 2.32
1827 2227 4.402155 TGCAGTGTTGGAAAACTGAGAATT 59.598 37.500 13.01 0.00 45.43 2.17
1828 2228 3.953612 TGCAGTGTTGGAAAACTGAGAAT 59.046 39.130 13.01 0.00 45.43 2.40
1829 2229 3.351740 TGCAGTGTTGGAAAACTGAGAA 58.648 40.909 13.01 0.00 45.43 2.87
1830 2230 2.997980 TGCAGTGTTGGAAAACTGAGA 58.002 42.857 13.01 0.00 45.43 3.27
1831 2231 3.996150 ATGCAGTGTTGGAAAACTGAG 57.004 42.857 13.01 0.00 45.43 3.35
1832 2232 3.243035 CGAATGCAGTGTTGGAAAACTGA 60.243 43.478 13.01 0.43 45.43 3.41
1833 2233 3.044986 CGAATGCAGTGTTGGAAAACTG 58.955 45.455 5.45 5.45 45.37 3.16
1834 2234 2.543653 GCGAATGCAGTGTTGGAAAACT 60.544 45.455 0.00 0.00 42.15 2.66
1835 2235 1.786579 GCGAATGCAGTGTTGGAAAAC 59.213 47.619 0.00 0.00 42.15 2.43
1836 2236 1.680735 AGCGAATGCAGTGTTGGAAAA 59.319 42.857 0.00 0.00 46.23 2.29
1837 2237 1.001487 CAGCGAATGCAGTGTTGGAAA 60.001 47.619 0.00 0.00 46.23 3.13
1838 2238 0.592637 CAGCGAATGCAGTGTTGGAA 59.407 50.000 0.00 0.00 46.23 3.53
1839 2239 2.246841 CAGCGAATGCAGTGTTGGA 58.753 52.632 0.00 0.00 46.23 3.53
1840 2240 4.853507 CAGCGAATGCAGTGTTGG 57.146 55.556 0.00 0.00 46.23 3.77
1888 2288 4.806247 AGTCTGAAGTTCTGAACTCGTTTG 59.194 41.667 22.24 11.57 41.91 2.93
1971 2380 3.511934 AGTCAGGTGAAGTAACTGGCTAG 59.488 47.826 0.00 0.00 44.60 3.42
1978 2387 5.351740 GCTAATCCAAGTCAGGTGAAGTAAC 59.648 44.000 0.00 0.00 0.00 2.50
1984 2393 2.166459 CGAGCTAATCCAAGTCAGGTGA 59.834 50.000 0.00 0.00 0.00 4.02
1985 2394 2.544685 CGAGCTAATCCAAGTCAGGTG 58.455 52.381 0.00 0.00 0.00 4.00
1995 2404 0.882484 GGAGCAAGCCGAGCTAATCC 60.882 60.000 0.00 4.17 43.58 3.01
2005 2414 1.627864 TTAAAACCCTGGAGCAAGCC 58.372 50.000 0.00 0.00 0.00 4.35
2019 2428 7.964011 AGAAACATTCTGAAACGTCGTTTAAAA 59.036 29.630 22.52 16.28 38.91 1.52
2021 2430 7.007313 AGAAACATTCTGAAACGTCGTTTAA 57.993 32.000 22.52 15.07 38.91 1.52
2023 2432 5.479716 AGAAACATTCTGAAACGTCGTTT 57.520 34.783 22.65 22.65 38.91 3.60
2035 2475 8.458843 CGGGTTATAACAATTCAGAAACATTCT 58.541 33.333 17.16 0.00 41.70 2.40
2051 2491 5.465724 CAGAATTCAGCCTACGGGTTATAAC 59.534 44.000 8.44 7.09 34.45 1.89
2089 2529 2.672651 TTGTGGTGCAGGCATCCG 60.673 61.111 1.50 0.00 0.00 4.18
2125 2565 7.648142 ACATGTGTACTTGGAACTTGTATTTG 58.352 34.615 0.00 0.00 32.36 2.32
2127 2567 7.117236 CGTACATGTGTACTTGGAACTTGTATT 59.883 37.037 18.14 0.00 46.43 1.89
2189 2629 6.064846 ACTGTGTTCTGTAAGCATTGAAAG 57.935 37.500 0.00 0.00 0.00 2.62
2205 2645 5.839621 ACACAAAGATCGTAGTACTGTGTT 58.160 37.500 14.61 0.00 34.84 3.32
2270 2715 4.551702 TTGCTAAGCTGAACTACCATGA 57.448 40.909 0.00 0.00 0.00 3.07
2294 2739 3.564235 ACATTGTTGTAGCACATGCAG 57.436 42.857 6.64 0.00 45.16 4.41
2319 2766 5.543405 ACCAGCAGCAGAGATTATCTATCTT 59.457 40.000 0.00 0.00 43.75 2.40
2629 3079 1.912043 ACCAGATCAGGTGGAAGAAGG 59.088 52.381 9.32 0.00 41.30 3.46
2634 3084 2.619931 TCTGAACCAGATCAGGTGGAA 58.380 47.619 11.01 0.00 45.55 3.53
2647 3097 4.754114 GCTAATGGATCTGTGATCTGAACC 59.246 45.833 7.38 0.00 35.90 3.62
2648 3098 5.363101 TGCTAATGGATCTGTGATCTGAAC 58.637 41.667 7.38 0.00 0.00 3.18
2668 3118 0.396139 ATGAATGTTCGGGCCATGCT 60.396 50.000 4.39 0.00 0.00 3.79
2679 3129 3.761752 CCGAACCCCAAGTTATGAATGTT 59.238 43.478 0.00 0.00 39.40 2.71
2683 3133 1.004979 CCCCGAACCCCAAGTTATGAA 59.995 52.381 0.00 0.00 39.40 2.57
2685 3135 0.395173 CCCCCGAACCCCAAGTTATG 60.395 60.000 0.00 0.00 39.40 1.90
2687 3137 1.463804 ACCCCCGAACCCCAAGTTA 60.464 57.895 0.00 0.00 39.40 2.24
2688 3138 2.779598 ACCCCCGAACCCCAAGTT 60.780 61.111 0.00 0.00 43.07 2.66
2689 3139 3.576259 CACCCCCGAACCCCAAGT 61.576 66.667 0.00 0.00 0.00 3.16
2693 3143 3.969346 TATTTTGCACCCCCGAACCCC 62.969 57.143 0.00 0.00 0.00 4.95
2694 3144 0.612453 TATTTTGCACCCCCGAACCC 60.612 55.000 0.00 0.00 0.00 4.11
2696 3146 1.471287 GAGTATTTTGCACCCCCGAAC 59.529 52.381 0.00 0.00 0.00 3.95
2697 3147 1.074084 TGAGTATTTTGCACCCCCGAA 59.926 47.619 0.00 0.00 0.00 4.30
2698 3148 0.693622 TGAGTATTTTGCACCCCCGA 59.306 50.000 0.00 0.00 0.00 5.14
2700 3150 2.290960 ACTCTGAGTATTTTGCACCCCC 60.291 50.000 8.91 0.00 0.00 5.40
2701 3151 3.010420 GACTCTGAGTATTTTGCACCCC 58.990 50.000 10.86 0.00 0.00 4.95
2702 3152 3.437049 GTGACTCTGAGTATTTTGCACCC 59.563 47.826 10.86 0.00 0.00 4.61
2703 3153 4.065088 TGTGACTCTGAGTATTTTGCACC 58.935 43.478 10.86 0.00 0.00 5.01
2704 3154 4.511454 TGTGTGACTCTGAGTATTTTGCAC 59.489 41.667 10.86 13.19 0.00 4.57
2705 3155 4.511454 GTGTGTGACTCTGAGTATTTTGCA 59.489 41.667 10.86 0.21 0.00 4.08
2706 3156 4.752101 AGTGTGTGACTCTGAGTATTTTGC 59.248 41.667 10.86 0.00 0.00 3.68
2707 3157 6.459257 GAGTGTGTGACTCTGAGTATTTTG 57.541 41.667 10.86 0.00 46.85 2.44
2740 3190 1.432514 ACACGATCATGCAGTGTGAC 58.567 50.000 16.12 0.00 45.99 3.67
2741 3191 3.912899 ACACGATCATGCAGTGTGA 57.087 47.368 16.12 0.00 45.99 3.58
2750 3202 6.038603 CCAACTTTATTCATCCACACGATCAT 59.961 38.462 0.00 0.00 0.00 2.45
2762 3214 7.270047 CCATTTCTCATGCCAACTTTATTCAT 58.730 34.615 0.00 0.00 0.00 2.57
2829 3288 3.181479 ACATGCTGTGATGAATGAATGCC 60.181 43.478 0.00 0.00 0.00 4.40
2921 3381 2.931105 TGGCGGGGAAAGCAGGTA 60.931 61.111 0.00 0.00 36.08 3.08
2967 3427 4.549458 CATCAATTCAAAAGTTGGCGAGT 58.451 39.130 0.00 0.00 0.00 4.18
3007 3467 1.071071 CGGTGAAAAGTGGAGGTGGTA 59.929 52.381 0.00 0.00 0.00 3.25
3011 3474 0.818040 GCACGGTGAAAAGTGGAGGT 60.818 55.000 13.29 0.00 38.68 3.85
3045 3508 3.152662 ACCTGAACAGACCGGGTTA 57.847 52.632 6.32 0.00 40.21 2.85
3049 3512 0.602905 GGTGAACCTGAACAGACCGG 60.603 60.000 0.00 0.00 0.00 5.28
3089 3557 6.363088 CACGTGAACATATTTGCAGTGAAAAT 59.637 34.615 10.90 13.70 0.00 1.82
3097 3565 5.152804 CACATTCACGTGAACATATTTGCA 58.847 37.500 31.87 7.44 39.34 4.08
3132 3600 0.762418 TCCACACCGTCAATCCAAGT 59.238 50.000 0.00 0.00 0.00 3.16
3143 3611 0.804364 CACACATTCCATCCACACCG 59.196 55.000 0.00 0.00 0.00 4.94
3153 3621 1.268113 CGCAACGCAACACACATTCC 61.268 55.000 0.00 0.00 0.00 3.01
3178 3646 0.171455 TGCCCACACAAAAACGTCAC 59.829 50.000 0.00 0.00 0.00 3.67
3194 3674 1.445582 CGTCCACGTAGAACCTGCC 60.446 63.158 0.00 0.00 34.11 4.85
3659 4158 1.203523 AGTCAGCAACGATCCTCAGAC 59.796 52.381 0.00 0.00 0.00 3.51
3665 4164 1.021390 CCCACAGTCAGCAACGATCC 61.021 60.000 0.00 0.00 0.00 3.36
3682 4181 4.735132 TACACGAGCACGCTGCCC 62.735 66.667 2.62 0.00 46.52 5.36
3707 4206 3.620821 CACATTACACATGACACGGCATA 59.379 43.478 0.00 0.00 0.00 3.14
3726 4225 5.221880 GCAACAATGAAGCTACAAATCACA 58.778 37.500 0.00 0.00 0.00 3.58
3744 4246 1.000394 TGCTAGCTCAGTTACGCAACA 60.000 47.619 17.23 0.00 37.10 3.33
3763 4265 1.429463 GTCAACCCGACTGCTACTTG 58.571 55.000 0.00 0.00 41.81 3.16
3774 4276 0.606401 ATGCTGAACTGGTCAACCCG 60.606 55.000 0.00 0.00 35.22 5.28
3776 4278 2.350772 CGAAATGCTGAACTGGTCAACC 60.351 50.000 0.00 0.00 35.22 3.77
3782 4284 3.270027 TGGATACGAAATGCTGAACTGG 58.730 45.455 0.00 0.00 42.51 4.00
3881 4383 4.512914 GATGCCAGCCAGGTCCCC 62.513 72.222 0.00 0.00 40.61 4.81
3882 4384 4.512914 GGATGCCAGCCAGGTCCC 62.513 72.222 0.00 0.00 40.61 4.46
3883 4385 3.412624 GAGGATGCCAGCCAGGTCC 62.413 68.421 0.01 0.00 40.61 4.46
3884 4386 2.191641 GAGGATGCCAGCCAGGTC 59.808 66.667 0.01 0.00 40.61 3.85
3885 4387 3.790437 CGAGGATGCCAGCCAGGT 61.790 66.667 0.01 0.00 40.61 4.00
3886 4388 4.559063 CCGAGGATGCCAGCCAGG 62.559 72.222 0.01 0.00 41.84 4.45
3887 4389 3.473647 TCCGAGGATGCCAGCCAG 61.474 66.667 0.01 0.00 0.00 4.85
3888 4390 3.785859 GTCCGAGGATGCCAGCCA 61.786 66.667 0.01 0.00 0.00 4.75
3889 4391 3.474570 AGTCCGAGGATGCCAGCC 61.475 66.667 0.00 0.00 0.00 4.85
3890 4392 2.202987 CAGTCCGAGGATGCCAGC 60.203 66.667 0.00 0.00 0.00 4.85
3891 4393 0.179089 CTTCAGTCCGAGGATGCCAG 60.179 60.000 0.00 0.00 0.00 4.85
3892 4394 0.614697 TCTTCAGTCCGAGGATGCCA 60.615 55.000 0.00 0.00 0.00 4.92
3893 4395 0.537188 TTCTTCAGTCCGAGGATGCC 59.463 55.000 0.00 0.00 28.41 4.40
3894 4396 2.611225 ATTCTTCAGTCCGAGGATGC 57.389 50.000 0.00 0.00 28.41 3.91
3895 4397 4.128925 TCAATTCTTCAGTCCGAGGATG 57.871 45.455 0.00 0.00 28.41 3.51
3896 4398 4.020218 TGTTCAATTCTTCAGTCCGAGGAT 60.020 41.667 0.00 0.00 28.41 3.24
3897 4399 3.323691 TGTTCAATTCTTCAGTCCGAGGA 59.676 43.478 0.00 0.00 0.00 3.71
3898 4400 3.433615 GTGTTCAATTCTTCAGTCCGAGG 59.566 47.826 0.00 0.00 0.00 4.63
3899 4401 4.310769 AGTGTTCAATTCTTCAGTCCGAG 58.689 43.478 0.00 0.00 0.00 4.63
3900 4402 4.336889 AGTGTTCAATTCTTCAGTCCGA 57.663 40.909 0.00 0.00 0.00 4.55
3901 4403 4.319766 CCAAGTGTTCAATTCTTCAGTCCG 60.320 45.833 0.00 0.00 0.00 4.79
3902 4404 4.580580 ACCAAGTGTTCAATTCTTCAGTCC 59.419 41.667 0.00 0.00 0.00 3.85
3903 4405 5.296780 TGACCAAGTGTTCAATTCTTCAGTC 59.703 40.000 0.00 0.00 0.00 3.51
3904 4406 5.192927 TGACCAAGTGTTCAATTCTTCAGT 58.807 37.500 0.00 0.00 0.00 3.41
3905 4407 5.756195 TGACCAAGTGTTCAATTCTTCAG 57.244 39.130 0.00 0.00 0.00 3.02
3906 4408 5.163561 GGTTGACCAAGTGTTCAATTCTTCA 60.164 40.000 0.00 0.00 35.64 3.02
3907 4409 5.163561 TGGTTGACCAAGTGTTCAATTCTTC 60.164 40.000 0.00 0.00 44.35 2.87
3908 4410 4.709397 TGGTTGACCAAGTGTTCAATTCTT 59.291 37.500 0.00 0.00 44.35 2.52
3909 4411 4.277476 TGGTTGACCAAGTGTTCAATTCT 58.723 39.130 0.00 0.00 44.35 2.40
3910 4412 4.097892 ACTGGTTGACCAAGTGTTCAATTC 59.902 41.667 4.18 0.00 46.97 2.17
3911 4413 4.023291 ACTGGTTGACCAAGTGTTCAATT 58.977 39.130 4.18 0.00 46.97 2.32
4013 4525 4.206477 TGTCCGTCTGATGTTTGATGAT 57.794 40.909 0.00 0.00 0.00 2.45
4014 4526 3.676291 TGTCCGTCTGATGTTTGATGA 57.324 42.857 0.00 0.00 0.00 2.92
4046 4558 4.193826 TCTCAACTTGTCTACTCATGCC 57.806 45.455 0.00 0.00 0.00 4.40
4047 4559 5.871524 TGAATCTCAACTTGTCTACTCATGC 59.128 40.000 0.00 0.00 0.00 4.06
4048 4560 6.870439 TGTGAATCTCAACTTGTCTACTCATG 59.130 38.462 0.00 0.00 0.00 3.07
4049 4561 6.997655 TGTGAATCTCAACTTGTCTACTCAT 58.002 36.000 0.00 0.00 0.00 2.90
4050 4562 6.265422 TCTGTGAATCTCAACTTGTCTACTCA 59.735 38.462 0.00 0.00 0.00 3.41
4082 4594 2.369203 TGTTGTTCATTGGTCCCGACTA 59.631 45.455 0.00 0.00 0.00 2.59
4083 4595 1.142060 TGTTGTTCATTGGTCCCGACT 59.858 47.619 0.00 0.00 0.00 4.18
4085 4597 2.350057 TTGTTGTTCATTGGTCCCGA 57.650 45.000 0.00 0.00 0.00 5.14
4089 4601 3.236816 CGCTGATTGTTGTTCATTGGTC 58.763 45.455 0.00 0.00 0.00 4.02
4091 4603 2.598589 CCGCTGATTGTTGTTCATTGG 58.401 47.619 0.00 0.00 0.00 3.16
4092 4604 2.598589 CCCGCTGATTGTTGTTCATTG 58.401 47.619 0.00 0.00 0.00 2.82
4093 4605 1.545582 CCCCGCTGATTGTTGTTCATT 59.454 47.619 0.00 0.00 0.00 2.57
4094 4606 1.176527 CCCCGCTGATTGTTGTTCAT 58.823 50.000 0.00 0.00 0.00 2.57
4095 4607 1.523154 GCCCCGCTGATTGTTGTTCA 61.523 55.000 0.00 0.00 0.00 3.18
4096 4608 1.212751 GCCCCGCTGATTGTTGTTC 59.787 57.895 0.00 0.00 0.00 3.18
4097 4609 0.037590 TAGCCCCGCTGATTGTTGTT 59.962 50.000 0.00 0.00 40.10 2.83
4098 4610 0.255890 ATAGCCCCGCTGATTGTTGT 59.744 50.000 0.00 0.00 40.10 3.32
4099 4611 2.254546 TATAGCCCCGCTGATTGTTG 57.745 50.000 0.00 0.00 40.10 3.33
4100 4612 3.508845 AATATAGCCCCGCTGATTGTT 57.491 42.857 0.00 0.00 40.10 2.83
4101 4613 3.508845 AAATATAGCCCCGCTGATTGT 57.491 42.857 0.00 0.00 40.10 2.71
4102 4614 3.820467 TGAAAATATAGCCCCGCTGATTG 59.180 43.478 0.00 0.00 40.10 2.67
4103 4615 4.074970 CTGAAAATATAGCCCCGCTGATT 58.925 43.478 0.00 0.00 40.10 2.57
4104 4616 3.679389 CTGAAAATATAGCCCCGCTGAT 58.321 45.455 0.00 0.00 40.10 2.90
4105 4617 2.810400 GCTGAAAATATAGCCCCGCTGA 60.810 50.000 0.00 0.00 40.10 4.26
4106 4618 1.537202 GCTGAAAATATAGCCCCGCTG 59.463 52.381 0.00 0.00 40.10 5.18
4107 4619 1.421646 AGCTGAAAATATAGCCCCGCT 59.578 47.619 0.00 0.00 43.41 5.52
4108 4620 1.897560 AGCTGAAAATATAGCCCCGC 58.102 50.000 0.00 0.00 40.76 6.13
4109 4621 3.214328 ACAAGCTGAAAATATAGCCCCG 58.786 45.455 0.00 0.00 40.76 5.73
4110 4622 4.464947 AGACAAGCTGAAAATATAGCCCC 58.535 43.478 0.00 0.00 40.76 5.80
4111 4623 6.456795 AAAGACAAGCTGAAAATATAGCCC 57.543 37.500 0.00 0.00 40.76 5.19
4137 4649 7.646130 ACAAGCTGAAAATATCGTTTCGAAAAA 59.354 29.630 13.10 4.35 39.99 1.94
4138 4650 7.136119 ACAAGCTGAAAATATCGTTTCGAAAA 58.864 30.769 13.10 0.00 39.99 2.29
4139 4651 6.664515 ACAAGCTGAAAATATCGTTTCGAAA 58.335 32.000 6.47 6.47 39.99 3.46
4140 4652 6.073494 TGACAAGCTGAAAATATCGTTTCGAA 60.073 34.615 0.00 0.00 39.99 3.71
4141 4653 5.407084 TGACAAGCTGAAAATATCGTTTCGA 59.593 36.000 0.00 0.00 39.85 3.71
4142 4654 5.504755 GTGACAAGCTGAAAATATCGTTTCG 59.495 40.000 0.00 0.00 39.85 3.46
4143 4655 6.370593 TGTGACAAGCTGAAAATATCGTTTC 58.629 36.000 0.00 0.00 37.89 2.78
4144 4656 6.312399 TGTGACAAGCTGAAAATATCGTTT 57.688 33.333 0.00 0.00 0.00 3.60
4145 4657 5.106555 CCTGTGACAAGCTGAAAATATCGTT 60.107 40.000 0.00 0.00 0.00 3.85
4146 4658 4.393062 CCTGTGACAAGCTGAAAATATCGT 59.607 41.667 0.00 0.00 0.00 3.73
4147 4659 4.728882 GCCTGTGACAAGCTGAAAATATCG 60.729 45.833 0.00 0.00 0.00 2.92
4148 4660 4.397417 AGCCTGTGACAAGCTGAAAATATC 59.603 41.667 8.06 0.00 34.99 1.63
4149 4661 4.338879 AGCCTGTGACAAGCTGAAAATAT 58.661 39.130 8.06 0.00 34.99 1.28
4150 4662 3.754965 AGCCTGTGACAAGCTGAAAATA 58.245 40.909 8.06 0.00 34.99 1.40
4182 4694 7.533561 CGCATGTGCATATTTCGTTGATTATTA 59.466 33.333 5.77 0.00 42.21 0.98
4185 4697 5.007136 TCGCATGTGCATATTTCGTTGATTA 59.993 36.000 0.00 0.00 42.21 1.75
4250 4762 6.318648 GGCTAAGATGTTCAACATGTTATCCA 59.681 38.462 24.98 8.12 43.90 3.41
4288 4800 4.003648 ACTTATCACCTGCTTGCTACAAC 58.996 43.478 0.00 0.00 0.00 3.32
4367 4879 5.984926 TGTCTTGAAAATGAATGAAAGCCAC 59.015 36.000 0.00 0.00 0.00 5.01
4368 4880 6.159299 TGTCTTGAAAATGAATGAAAGCCA 57.841 33.333 0.00 0.00 0.00 4.75
4371 4884 7.922278 TGGAGTTGTCTTGAAAATGAATGAAAG 59.078 33.333 0.00 0.00 0.00 2.62
4383 4896 0.843309 TGCCCTGGAGTTGTCTTGAA 59.157 50.000 0.00 0.00 0.00 2.69
4396 4909 1.098050 GCAAGTACCTTGATGCCCTG 58.902 55.000 8.11 0.00 43.42 4.45
4398 4911 0.811281 GTGCAAGTACCTTGATGCCC 59.189 55.000 8.11 0.00 43.42 5.36
4416 4929 4.323104 GCAACTCTCCTATCCTTGACAAGT 60.323 45.833 14.03 0.00 0.00 3.16
4504 5017 2.102588 GTGCCGCTAAATAGAAGGGAGA 59.897 50.000 0.00 0.00 0.00 3.71
4566 5082 0.694771 TGGGTGAAGAGCAGCAGAAT 59.305 50.000 0.00 0.00 46.67 2.40
4578 5094 2.563179 GAGCTCTAGTTCTGTGGGTGAA 59.437 50.000 6.43 0.00 0.00 3.18
4624 5140 3.576550 ACAACAAAAAGGGCCGATACAAT 59.423 39.130 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.