Multiple sequence alignment - TraesCS4B01G228900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G228900 chr4B 100.000 5172 0 0 1 5172 479672610 479677781 0.000000e+00 9551.0
1 TraesCS4B01G228900 chr4D 96.687 4649 87 27 570 5172 389572078 389576705 0.000000e+00 7670.0
2 TraesCS4B01G228900 chr4D 91.429 105 9 0 469 573 389519743 389519847 1.500000e-30 145.0
3 TraesCS4B01G228900 chr4A 94.416 1755 46 9 3444 5172 71253087 71254815 0.000000e+00 2651.0
4 TraesCS4B01G228900 chr4A 96.230 1406 40 6 1927 3326 71251688 71253086 0.000000e+00 2290.0
5 TraesCS4B01G228900 chr4A 94.130 1482 65 7 469 1932 71250126 71251603 0.000000e+00 2235.0
6 TraesCS4B01G228900 chr4A 95.565 248 10 1 4637 4884 71255473 71255719 3.750000e-106 396.0
7 TraesCS4B01G228900 chr4A 85.567 97 14 0 2003 2099 423437162 423437066 9.160000e-18 102.0
8 TraesCS4B01G228900 chr4A 89.610 77 7 1 3624 3700 423436619 423436544 4.260000e-16 97.1
9 TraesCS4B01G228900 chrUn 100.000 390 0 0 3950 4339 479987893 479987504 0.000000e+00 721.0
10 TraesCS4B01G228900 chr2B 90.220 409 28 6 5 408 617960331 617959930 1.650000e-144 523.0
11 TraesCS4B01G228900 chr3D 89.873 395 27 6 5 395 593076511 593076126 3.600000e-136 496.0
12 TraesCS4B01G228900 chr1D 88.722 399 31 6 16 408 459026190 459025800 4.690000e-130 475.0
13 TraesCS4B01G228900 chr7D 87.805 410 34 9 5 408 168045177 168045576 2.820000e-127 466.0
14 TraesCS4B01G228900 chr7D 87.909 397 34 8 16 408 385535934 385536320 6.110000e-124 455.0
15 TraesCS4B01G228900 chr1B 87.186 398 35 10 16 408 610025564 610025178 6.150000e-119 438.0
16 TraesCS4B01G228900 chr1B 92.000 75 5 1 3624 3698 524393895 524393822 2.550000e-18 104.0
17 TraesCS4B01G228900 chr5B 85.817 416 42 11 5 413 650952445 650952850 4.790000e-115 425.0
18 TraesCS4B01G228900 chr6A 90.031 321 25 6 5 320 70956144 70955826 4.820000e-110 409.0
19 TraesCS4B01G228900 chr6D 84.655 391 44 11 21 406 458586858 458586479 4.890000e-100 375.0
20 TraesCS4B01G228900 chr6D 93.827 81 5 0 3618 3698 282079116 282079036 7.030000e-24 122.0
21 TraesCS4B01G228900 chr7B 89.362 94 8 2 3608 3700 16931978 16931886 3.270000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G228900 chr4B 479672610 479677781 5171 False 9551 9551 100.00000 1 5172 1 chr4B.!!$F1 5171
1 TraesCS4B01G228900 chr4D 389572078 389576705 4627 False 7670 7670 96.68700 570 5172 1 chr4D.!!$F2 4602
2 TraesCS4B01G228900 chr4A 71250126 71255719 5593 False 1893 2651 95.08525 469 5172 4 chr4A.!!$F1 4703

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
236 237 0.034477 AATTGGGTAAGGTGGCCGAG 60.034 55.0 0.0 0.0 0.00 4.63 F
438 439 0.037590 TCCGCTGTGGTTTAGGCAAT 59.962 50.0 7.2 0.0 39.52 3.56 F
461 462 0.328258 GGCAGCTAGTTTTCCCCTCA 59.672 55.0 0.0 0.0 0.00 3.86 F
539 540 0.474184 ATAAGGGTTCCATCCAGCGG 59.526 55.0 0.0 0.0 0.00 5.52 F
743 746 0.965439 GAGTCCCCATCTCCATCTCG 59.035 60.0 0.0 0.0 0.00 4.04 F
1270 1305 1.567357 TGACGATTCTGGTGATGGGA 58.433 50.0 0.0 0.0 0.00 4.37 F
2633 2766 2.739609 GCTGCTTTCATAATTGCCCACC 60.740 50.0 0.0 0.0 0.00 4.61 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1530 1565 0.694771 TCTCCACAGCCTGCTCATTT 59.305 50.000 0.00 0.00 0.00 2.32 R
2422 2555 6.655848 ACCATTTTAACCTCGTTAGTATGCAA 59.344 34.615 0.00 0.00 29.41 4.08 R
2446 2579 1.081094 AATAAGCACACGCGGGTTAC 58.919 50.000 13.62 7.36 45.49 2.50 R
2496 2629 8.620177 TCTAGAAAGGGAAAATTAATCCAAGGA 58.380 33.333 11.23 0.00 38.80 3.36 R
2633 2766 9.030301 TGATATACAGATTGTATGACAACAACG 57.970 33.333 11.04 0.00 42.93 4.10 R
3217 3353 4.315803 TCAAGATCAAACCGAAAGAGGAC 58.684 43.478 0.00 0.00 34.73 3.85 R
4492 4653 2.621998 CAATCACCATGGCTTCTGATCC 59.378 50.000 13.04 0.00 0.00 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.454728 ACATATGTGAATGTTTGGTGCC 57.545 40.909 7.78 0.00 36.71 5.01
26 27 3.831333 ACATATGTGAATGTTTGGTGCCA 59.169 39.130 7.78 0.00 36.71 4.92
27 28 4.467082 ACATATGTGAATGTTTGGTGCCAT 59.533 37.500 7.78 0.00 36.71 4.40
28 29 3.598019 ATGTGAATGTTTGGTGCCATC 57.402 42.857 0.00 0.00 0.00 3.51
29 30 2.596346 TGTGAATGTTTGGTGCCATCT 58.404 42.857 0.00 0.00 0.00 2.90
30 31 3.760738 TGTGAATGTTTGGTGCCATCTA 58.239 40.909 0.00 0.00 0.00 1.98
31 32 3.758023 TGTGAATGTTTGGTGCCATCTAG 59.242 43.478 0.00 0.00 0.00 2.43
32 33 3.758554 GTGAATGTTTGGTGCCATCTAGT 59.241 43.478 0.00 0.00 0.00 2.57
33 34 4.218417 GTGAATGTTTGGTGCCATCTAGTT 59.782 41.667 0.00 0.00 0.00 2.24
34 35 4.458989 TGAATGTTTGGTGCCATCTAGTTC 59.541 41.667 0.00 0.00 0.00 3.01
35 36 3.500448 TGTTTGGTGCCATCTAGTTCA 57.500 42.857 0.00 0.00 0.00 3.18
36 37 4.032960 TGTTTGGTGCCATCTAGTTCAT 57.967 40.909 0.00 0.00 0.00 2.57
37 38 3.758023 TGTTTGGTGCCATCTAGTTCATG 59.242 43.478 0.00 0.00 0.00 3.07
38 39 2.042686 TGGTGCCATCTAGTTCATGC 57.957 50.000 0.00 0.00 0.00 4.06
39 40 1.561076 TGGTGCCATCTAGTTCATGCT 59.439 47.619 0.00 0.00 0.00 3.79
40 41 2.025981 TGGTGCCATCTAGTTCATGCTT 60.026 45.455 0.00 0.00 0.00 3.91
41 42 3.199727 TGGTGCCATCTAGTTCATGCTTA 59.800 43.478 0.00 0.00 0.00 3.09
42 43 4.141413 TGGTGCCATCTAGTTCATGCTTAT 60.141 41.667 0.00 0.00 0.00 1.73
43 44 4.823989 GGTGCCATCTAGTTCATGCTTATT 59.176 41.667 0.00 0.00 0.00 1.40
44 45 5.278169 GGTGCCATCTAGTTCATGCTTATTG 60.278 44.000 0.00 0.00 0.00 1.90
45 46 4.276678 TGCCATCTAGTTCATGCTTATTGC 59.723 41.667 0.00 0.00 43.25 3.56
46 47 4.518211 GCCATCTAGTTCATGCTTATTGCT 59.482 41.667 0.00 0.00 43.37 3.91
47 48 5.702670 GCCATCTAGTTCATGCTTATTGCTA 59.297 40.000 0.00 0.00 43.37 3.49
48 49 6.348050 GCCATCTAGTTCATGCTTATTGCTAC 60.348 42.308 0.00 0.00 43.37 3.58
49 50 6.148480 CCATCTAGTTCATGCTTATTGCTACC 59.852 42.308 0.00 0.00 43.37 3.18
50 51 5.611374 TCTAGTTCATGCTTATTGCTACCC 58.389 41.667 0.00 0.00 43.37 3.69
51 52 4.235079 AGTTCATGCTTATTGCTACCCA 57.765 40.909 0.00 0.00 43.37 4.51
52 53 4.796606 AGTTCATGCTTATTGCTACCCAT 58.203 39.130 0.00 0.00 43.37 4.00
53 54 5.203528 AGTTCATGCTTATTGCTACCCATT 58.796 37.500 0.00 0.00 43.37 3.16
54 55 5.658190 AGTTCATGCTTATTGCTACCCATTT 59.342 36.000 0.00 0.00 43.37 2.32
55 56 6.155049 AGTTCATGCTTATTGCTACCCATTTT 59.845 34.615 0.00 0.00 43.37 1.82
56 57 6.543430 TCATGCTTATTGCTACCCATTTTT 57.457 33.333 0.00 0.00 43.37 1.94
57 58 6.339730 TCATGCTTATTGCTACCCATTTTTG 58.660 36.000 0.00 0.00 43.37 2.44
58 59 5.736951 TGCTTATTGCTACCCATTTTTGT 57.263 34.783 0.00 0.00 43.37 2.83
59 60 6.842437 TGCTTATTGCTACCCATTTTTGTA 57.158 33.333 0.00 0.00 43.37 2.41
60 61 7.233389 TGCTTATTGCTACCCATTTTTGTAA 57.767 32.000 0.00 0.00 43.37 2.41
61 62 7.671302 TGCTTATTGCTACCCATTTTTGTAAA 58.329 30.769 0.00 0.00 43.37 2.01
62 63 8.317679 TGCTTATTGCTACCCATTTTTGTAAAT 58.682 29.630 0.00 0.00 43.37 1.40
63 64 9.161629 GCTTATTGCTACCCATTTTTGTAAATT 57.838 29.630 0.00 0.00 38.95 1.82
96 97 6.942886 TTTTATTCCATCGCACAACAAATC 57.057 33.333 0.00 0.00 0.00 2.17
97 98 2.610219 TTCCATCGCACAACAAATCG 57.390 45.000 0.00 0.00 0.00 3.34
98 99 1.518325 TCCATCGCACAACAAATCGT 58.482 45.000 0.00 0.00 0.00 3.73
99 100 1.196581 TCCATCGCACAACAAATCGTG 59.803 47.619 0.00 0.00 36.18 4.35
100 101 1.196581 CCATCGCACAACAAATCGTGA 59.803 47.619 0.00 0.00 35.02 4.35
101 102 2.159531 CCATCGCACAACAAATCGTGAT 60.160 45.455 0.00 0.00 35.02 3.06
102 103 3.063316 CCATCGCACAACAAATCGTGATA 59.937 43.478 0.00 0.00 35.02 2.15
103 104 4.260743 CCATCGCACAACAAATCGTGATAT 60.261 41.667 0.00 0.00 35.02 1.63
104 105 4.257536 TCGCACAACAAATCGTGATATG 57.742 40.909 0.00 0.00 35.02 1.78
105 106 2.777845 CGCACAACAAATCGTGATATGC 59.222 45.455 0.00 0.00 35.02 3.14
106 107 3.727376 CGCACAACAAATCGTGATATGCA 60.727 43.478 0.00 0.00 35.02 3.96
107 108 4.353737 GCACAACAAATCGTGATATGCAT 58.646 39.130 3.79 3.79 35.02 3.96
108 109 4.205588 GCACAACAAATCGTGATATGCATG 59.794 41.667 10.16 0.00 35.02 4.06
109 110 5.334319 CACAACAAATCGTGATATGCATGT 58.666 37.500 10.16 1.23 35.02 3.21
110 111 5.228427 CACAACAAATCGTGATATGCATGTG 59.772 40.000 10.16 0.87 35.02 3.21
111 112 3.956233 ACAAATCGTGATATGCATGTGC 58.044 40.909 10.16 0.00 42.50 4.57
112 113 3.628942 ACAAATCGTGATATGCATGTGCT 59.371 39.130 10.16 0.00 42.66 4.40
113 114 3.891056 AATCGTGATATGCATGTGCTG 57.109 42.857 10.16 0.00 42.66 4.41
114 115 2.600470 TCGTGATATGCATGTGCTGA 57.400 45.000 10.16 0.00 42.66 4.26
115 116 2.903798 TCGTGATATGCATGTGCTGAA 58.096 42.857 10.16 0.00 42.66 3.02
116 117 3.269178 TCGTGATATGCATGTGCTGAAA 58.731 40.909 10.16 0.00 42.66 2.69
117 118 3.310501 TCGTGATATGCATGTGCTGAAAG 59.689 43.478 10.16 0.00 42.66 2.62
118 119 3.547413 CGTGATATGCATGTGCTGAAAGG 60.547 47.826 10.16 0.00 42.66 3.11
119 120 2.359848 TGATATGCATGTGCTGAAAGGC 59.640 45.455 10.16 0.00 42.66 4.35
120 121 2.133281 TATGCATGTGCTGAAAGGCT 57.867 45.000 10.16 0.00 42.66 4.58
121 122 2.133281 ATGCATGTGCTGAAAGGCTA 57.867 45.000 0.00 0.00 42.66 3.93
122 123 1.908344 TGCATGTGCTGAAAGGCTAA 58.092 45.000 6.55 0.00 42.66 3.09
123 124 2.237643 TGCATGTGCTGAAAGGCTAAA 58.762 42.857 6.55 0.00 42.66 1.85
124 125 2.627221 TGCATGTGCTGAAAGGCTAAAA 59.373 40.909 6.55 0.00 42.66 1.52
125 126 3.258872 TGCATGTGCTGAAAGGCTAAAAT 59.741 39.130 6.55 0.00 42.66 1.82
126 127 3.615496 GCATGTGCTGAAAGGCTAAAATG 59.385 43.478 0.00 0.00 38.21 2.32
127 128 4.813027 CATGTGCTGAAAGGCTAAAATGT 58.187 39.130 0.00 0.00 0.00 2.71
128 129 4.241590 TGTGCTGAAAGGCTAAAATGTG 57.758 40.909 0.00 0.00 0.00 3.21
129 130 3.005684 TGTGCTGAAAGGCTAAAATGTGG 59.994 43.478 0.00 0.00 0.00 4.17
130 131 3.005791 GTGCTGAAAGGCTAAAATGTGGT 59.994 43.478 0.00 0.00 0.00 4.16
131 132 4.217550 GTGCTGAAAGGCTAAAATGTGGTA 59.782 41.667 0.00 0.00 0.00 3.25
132 133 5.016173 TGCTGAAAGGCTAAAATGTGGTAT 58.984 37.500 0.00 0.00 0.00 2.73
133 134 6.094881 GTGCTGAAAGGCTAAAATGTGGTATA 59.905 38.462 0.00 0.00 0.00 1.47
134 135 6.833416 TGCTGAAAGGCTAAAATGTGGTATAT 59.167 34.615 0.00 0.00 0.00 0.86
135 136 7.013274 TGCTGAAAGGCTAAAATGTGGTATATC 59.987 37.037 0.00 0.00 0.00 1.63
136 137 7.229506 GCTGAAAGGCTAAAATGTGGTATATCT 59.770 37.037 0.00 0.00 0.00 1.98
137 138 9.125026 CTGAAAGGCTAAAATGTGGTATATCTT 57.875 33.333 0.00 0.00 0.00 2.40
138 139 9.474313 TGAAAGGCTAAAATGTGGTATATCTTT 57.526 29.630 0.00 0.00 0.00 2.52
139 140 9.736023 GAAAGGCTAAAATGTGGTATATCTTTG 57.264 33.333 0.00 0.00 0.00 2.77
140 141 8.823220 AAGGCTAAAATGTGGTATATCTTTGT 57.177 30.769 0.00 0.00 0.00 2.83
141 142 8.823220 AGGCTAAAATGTGGTATATCTTTGTT 57.177 30.769 0.00 0.00 0.00 2.83
142 143 8.686334 AGGCTAAAATGTGGTATATCTTTGTTG 58.314 33.333 0.00 0.00 0.00 3.33
143 144 8.682710 GGCTAAAATGTGGTATATCTTTGTTGA 58.317 33.333 0.00 0.00 0.00 3.18
163 164 9.979578 TTGTTGAAATTTTGAAGTATACATGCT 57.020 25.926 5.50 0.00 0.00 3.79
164 165 9.409312 TGTTGAAATTTTGAAGTATACATGCTG 57.591 29.630 5.50 0.00 0.00 4.41
165 166 9.624697 GTTGAAATTTTGAAGTATACATGCTGA 57.375 29.630 5.50 0.00 0.00 4.26
173 174 9.979578 TTTGAAGTATACATGCTGAAATTTTGT 57.020 25.926 5.50 0.00 0.00 2.83
222 223 2.686558 CACGGTGAAGTGTGAATTGG 57.313 50.000 0.74 0.00 38.36 3.16
223 224 1.266718 CACGGTGAAGTGTGAATTGGG 59.733 52.381 0.74 0.00 38.36 4.12
224 225 1.133915 ACGGTGAAGTGTGAATTGGGT 60.134 47.619 0.00 0.00 0.00 4.51
225 226 2.105134 ACGGTGAAGTGTGAATTGGGTA 59.895 45.455 0.00 0.00 0.00 3.69
226 227 3.142951 CGGTGAAGTGTGAATTGGGTAA 58.857 45.455 0.00 0.00 0.00 2.85
227 228 3.188460 CGGTGAAGTGTGAATTGGGTAAG 59.812 47.826 0.00 0.00 0.00 2.34
228 229 3.506067 GGTGAAGTGTGAATTGGGTAAGG 59.494 47.826 0.00 0.00 0.00 2.69
229 230 4.142038 GTGAAGTGTGAATTGGGTAAGGT 58.858 43.478 0.00 0.00 0.00 3.50
230 231 4.023193 GTGAAGTGTGAATTGGGTAAGGTG 60.023 45.833 0.00 0.00 0.00 4.00
231 232 3.154827 AGTGTGAATTGGGTAAGGTGG 57.845 47.619 0.00 0.00 0.00 4.61
232 233 1.544246 GTGTGAATTGGGTAAGGTGGC 59.456 52.381 0.00 0.00 0.00 5.01
233 234 1.182667 GTGAATTGGGTAAGGTGGCC 58.817 55.000 0.00 0.00 0.00 5.36
234 235 0.322997 TGAATTGGGTAAGGTGGCCG 60.323 55.000 0.00 0.00 0.00 6.13
235 236 0.034863 GAATTGGGTAAGGTGGCCGA 60.035 55.000 0.00 0.00 0.00 5.54
236 237 0.034477 AATTGGGTAAGGTGGCCGAG 60.034 55.000 0.00 0.00 0.00 4.63
237 238 0.912487 ATTGGGTAAGGTGGCCGAGA 60.912 55.000 0.00 0.00 0.00 4.04
238 239 1.128809 TTGGGTAAGGTGGCCGAGAA 61.129 55.000 0.00 0.00 0.00 2.87
239 240 1.221021 GGGTAAGGTGGCCGAGAAG 59.779 63.158 0.00 0.00 0.00 2.85
240 241 1.221021 GGTAAGGTGGCCGAGAAGG 59.779 63.158 0.00 0.00 44.97 3.46
241 242 1.221021 GTAAGGTGGCCGAGAAGGG 59.779 63.158 0.00 0.00 41.48 3.95
242 243 1.229400 TAAGGTGGCCGAGAAGGGT 60.229 57.895 0.00 0.00 41.48 4.34
243 244 0.041535 TAAGGTGGCCGAGAAGGGTA 59.958 55.000 0.00 0.00 41.48 3.69
244 245 0.620700 AAGGTGGCCGAGAAGGGTAT 60.621 55.000 0.00 0.00 41.48 2.73
245 246 0.620700 AGGTGGCCGAGAAGGGTATT 60.621 55.000 0.00 0.00 41.48 1.89
246 247 0.255033 GGTGGCCGAGAAGGGTATTT 59.745 55.000 0.00 0.00 41.48 1.40
247 248 1.340697 GGTGGCCGAGAAGGGTATTTT 60.341 52.381 0.00 0.00 41.48 1.82
248 249 2.443416 GTGGCCGAGAAGGGTATTTTT 58.557 47.619 0.00 0.00 41.48 1.94
249 250 3.613030 GTGGCCGAGAAGGGTATTTTTA 58.387 45.455 0.00 0.00 41.48 1.52
250 251 3.376234 GTGGCCGAGAAGGGTATTTTTAC 59.624 47.826 0.00 0.00 41.48 2.01
251 252 2.947652 GGCCGAGAAGGGTATTTTTACC 59.052 50.000 0.00 0.00 41.48 2.85
280 281 4.910585 GCACTCGGCCGGGTATGG 62.911 72.222 34.01 20.75 36.11 2.74
281 282 4.235762 CACTCGGCCGGGTATGGG 62.236 72.222 34.01 15.59 0.00 4.00
282 283 4.791069 ACTCGGCCGGGTATGGGT 62.791 66.667 33.67 2.17 0.00 4.51
283 284 2.522436 CTCGGCCGGGTATGGGTA 60.522 66.667 27.83 0.26 0.00 3.69
284 285 1.911766 CTCGGCCGGGTATGGGTAT 60.912 63.158 27.83 0.00 0.00 2.73
285 286 2.167398 CTCGGCCGGGTATGGGTATG 62.167 65.000 27.83 0.00 0.00 2.39
286 287 2.754375 GGCCGGGTATGGGTATGG 59.246 66.667 2.18 0.00 0.00 2.74
287 288 2.754375 GCCGGGTATGGGTATGGG 59.246 66.667 2.18 0.00 0.00 4.00
288 289 1.844289 GCCGGGTATGGGTATGGGA 60.844 63.158 2.18 0.00 0.00 4.37
289 290 1.420532 GCCGGGTATGGGTATGGGAA 61.421 60.000 2.18 0.00 0.00 3.97
290 291 0.399075 CCGGGTATGGGTATGGGAAC 59.601 60.000 0.00 0.00 0.00 3.62
303 304 2.366640 TGGGAACAATTGAAACCCGA 57.633 45.000 23.07 14.96 43.04 5.14
304 305 2.235016 TGGGAACAATTGAAACCCGAG 58.765 47.619 23.07 0.00 43.04 4.63
305 306 1.544246 GGGAACAATTGAAACCCGAGG 59.456 52.381 13.59 0.00 0.00 4.63
306 307 2.235891 GGAACAATTGAAACCCGAGGT 58.764 47.619 13.59 0.00 37.65 3.85
307 308 2.030274 GGAACAATTGAAACCCGAGGTG 60.030 50.000 13.59 0.00 35.34 4.00
308 309 0.958822 ACAATTGAAACCCGAGGTGC 59.041 50.000 13.59 0.00 35.34 5.01
309 310 0.109781 CAATTGAAACCCGAGGTGCG 60.110 55.000 0.00 0.00 35.34 5.34
318 319 3.379445 CGAGGTGCGGGTACAGGT 61.379 66.667 0.00 0.00 36.03 4.00
319 320 2.048023 CGAGGTGCGGGTACAGGTA 61.048 63.158 0.00 0.00 36.03 3.08
320 321 1.514553 GAGGTGCGGGTACAGGTAC 59.485 63.158 0.93 0.93 35.40 3.34
321 322 1.228956 AGGTGCGGGTACAGGTACA 60.229 57.895 11.35 0.00 37.78 2.90
322 323 0.616679 AGGTGCGGGTACAGGTACAT 60.617 55.000 11.35 0.00 37.78 2.29
323 324 0.461339 GGTGCGGGTACAGGTACATG 60.461 60.000 5.87 5.87 37.78 3.21
324 325 0.248289 GTGCGGGTACAGGTACATGT 59.752 55.000 18.23 18.23 37.78 3.21
325 326 1.477700 GTGCGGGTACAGGTACATGTA 59.522 52.381 15.99 15.99 37.78 2.29
331 332 3.874392 GTACAGGTACATGTACGGGTT 57.126 47.619 28.75 15.72 44.30 4.11
332 333 4.192429 GTACAGGTACATGTACGGGTTT 57.808 45.455 28.75 14.38 44.30 3.27
333 334 3.048337 ACAGGTACATGTACGGGTTTG 57.952 47.619 25.69 19.71 36.94 2.93
334 335 2.633967 ACAGGTACATGTACGGGTTTGA 59.366 45.455 25.69 0.00 36.94 2.69
335 336 3.259064 CAGGTACATGTACGGGTTTGAG 58.741 50.000 25.69 8.49 36.94 3.02
336 337 2.004733 GGTACATGTACGGGTTTGAGC 58.995 52.381 25.69 8.32 36.94 4.26
337 338 1.657094 GTACATGTACGGGTTTGAGCG 59.343 52.381 19.71 0.00 0.00 5.03
338 339 0.319083 ACATGTACGGGTTTGAGCGA 59.681 50.000 0.00 0.00 0.00 4.93
339 340 1.270412 ACATGTACGGGTTTGAGCGAA 60.270 47.619 0.00 0.00 0.00 4.70
340 341 1.801771 CATGTACGGGTTTGAGCGAAA 59.198 47.619 0.00 0.00 0.00 3.46
341 342 1.950828 TGTACGGGTTTGAGCGAAAA 58.049 45.000 0.00 0.00 0.00 2.29
342 343 2.286872 TGTACGGGTTTGAGCGAAAAA 58.713 42.857 0.00 0.00 0.00 1.94
343 344 2.879646 TGTACGGGTTTGAGCGAAAAAT 59.120 40.909 0.00 0.00 0.00 1.82
344 345 4.063689 TGTACGGGTTTGAGCGAAAAATA 58.936 39.130 0.00 0.00 0.00 1.40
345 346 4.696402 TGTACGGGTTTGAGCGAAAAATAT 59.304 37.500 0.00 0.00 0.00 1.28
346 347 4.776795 ACGGGTTTGAGCGAAAAATATT 57.223 36.364 0.00 0.00 0.00 1.28
347 348 4.481463 ACGGGTTTGAGCGAAAAATATTG 58.519 39.130 0.00 0.00 0.00 1.90
348 349 4.216687 ACGGGTTTGAGCGAAAAATATTGA 59.783 37.500 0.00 0.00 0.00 2.57
349 350 4.793216 CGGGTTTGAGCGAAAAATATTGAG 59.207 41.667 0.00 0.00 0.00 3.02
350 351 5.391523 CGGGTTTGAGCGAAAAATATTGAGA 60.392 40.000 0.00 0.00 0.00 3.27
351 352 6.564328 GGGTTTGAGCGAAAAATATTGAGAT 58.436 36.000 0.00 0.00 0.00 2.75
352 353 6.473455 GGGTTTGAGCGAAAAATATTGAGATG 59.527 38.462 0.00 0.00 0.00 2.90
353 354 6.473455 GGTTTGAGCGAAAAATATTGAGATGG 59.527 38.462 0.00 0.00 0.00 3.51
354 355 5.756195 TGAGCGAAAAATATTGAGATGGG 57.244 39.130 0.00 0.00 0.00 4.00
355 356 5.192927 TGAGCGAAAAATATTGAGATGGGT 58.807 37.500 0.00 0.00 0.00 4.51
356 357 6.353323 TGAGCGAAAAATATTGAGATGGGTA 58.647 36.000 0.00 0.00 0.00 3.69
357 358 6.826231 TGAGCGAAAAATATTGAGATGGGTAA 59.174 34.615 0.00 0.00 0.00 2.85
358 359 7.012327 TGAGCGAAAAATATTGAGATGGGTAAG 59.988 37.037 0.00 0.00 0.00 2.34
359 360 6.263168 AGCGAAAAATATTGAGATGGGTAAGG 59.737 38.462 0.00 0.00 0.00 2.69
360 361 6.515035 GCGAAAAATATTGAGATGGGTAAGGG 60.515 42.308 0.00 0.00 0.00 3.95
361 362 6.546034 CGAAAAATATTGAGATGGGTAAGGGT 59.454 38.462 0.00 0.00 0.00 4.34
362 363 7.068226 CGAAAAATATTGAGATGGGTAAGGGTT 59.932 37.037 0.00 0.00 0.00 4.11
363 364 8.679344 AAAAATATTGAGATGGGTAAGGGTTT 57.321 30.769 0.00 0.00 0.00 3.27
364 365 7.660030 AAATATTGAGATGGGTAAGGGTTTG 57.340 36.000 0.00 0.00 0.00 2.93
365 366 3.449746 TTGAGATGGGTAAGGGTTTGG 57.550 47.619 0.00 0.00 0.00 3.28
366 367 2.638325 TGAGATGGGTAAGGGTTTGGA 58.362 47.619 0.00 0.00 0.00 3.53
367 368 2.307686 TGAGATGGGTAAGGGTTTGGAC 59.692 50.000 0.00 0.00 0.00 4.02
368 369 1.280998 AGATGGGTAAGGGTTTGGACG 59.719 52.381 0.00 0.00 0.00 4.79
369 370 1.279846 GATGGGTAAGGGTTTGGACGA 59.720 52.381 0.00 0.00 0.00 4.20
370 371 0.397564 TGGGTAAGGGTTTGGACGAC 59.602 55.000 0.00 0.00 0.00 4.34
371 372 0.321919 GGGTAAGGGTTTGGACGACC 60.322 60.000 0.00 0.00 36.41 4.79
372 373 0.397564 GGTAAGGGTTTGGACGACCA 59.602 55.000 1.37 1.37 45.34 4.02
373 374 1.003928 GGTAAGGGTTTGGACGACCAT 59.996 52.381 7.61 0.00 46.34 3.55
374 375 2.553685 GGTAAGGGTTTGGACGACCATT 60.554 50.000 7.61 1.10 46.34 3.16
375 376 3.307621 GGTAAGGGTTTGGACGACCATTA 60.308 47.826 7.61 0.03 46.34 1.90
376 377 3.732048 AAGGGTTTGGACGACCATTAT 57.268 42.857 7.61 0.00 46.34 1.28
377 378 3.277142 AGGGTTTGGACGACCATTATC 57.723 47.619 7.61 0.00 46.34 1.75
378 379 2.092592 AGGGTTTGGACGACCATTATCC 60.093 50.000 7.61 8.92 46.34 2.59
379 380 1.937899 GGTTTGGACGACCATTATCCG 59.062 52.381 7.61 0.00 46.34 4.18
380 381 1.329599 GTTTGGACGACCATTATCCGC 59.670 52.381 7.61 0.00 46.34 5.54
381 382 0.537653 TTGGACGACCATTATCCGCA 59.462 50.000 7.61 0.00 46.34 5.69
382 383 0.179094 TGGACGACCATTATCCGCAC 60.179 55.000 1.37 0.00 41.77 5.34
383 384 0.878961 GGACGACCATTATCCGCACC 60.879 60.000 0.00 0.00 35.97 5.01
384 385 0.878961 GACGACCATTATCCGCACCC 60.879 60.000 0.00 0.00 0.00 4.61
385 386 1.954146 CGACCATTATCCGCACCCG 60.954 63.158 0.00 0.00 0.00 5.28
386 387 1.444250 GACCATTATCCGCACCCGA 59.556 57.895 0.00 0.00 36.29 5.14
387 388 0.179067 GACCATTATCCGCACCCGAA 60.179 55.000 0.00 0.00 36.29 4.30
388 389 0.463116 ACCATTATCCGCACCCGAAC 60.463 55.000 0.00 0.00 36.29 3.95
389 390 1.164041 CCATTATCCGCACCCGAACC 61.164 60.000 0.00 0.00 36.29 3.62
390 391 1.147600 ATTATCCGCACCCGAACCC 59.852 57.895 0.00 0.00 36.29 4.11
391 392 2.653953 ATTATCCGCACCCGAACCCG 62.654 60.000 0.00 0.00 36.29 5.28
405 406 2.034066 CCCGACAGGTGCCATGTT 59.966 61.111 0.00 0.00 35.12 2.71
406 407 2.334946 CCCGACAGGTGCCATGTTG 61.335 63.158 0.00 1.56 35.12 3.33
407 408 1.302431 CCGACAGGTGCCATGTTGA 60.302 57.895 8.30 0.00 34.50 3.18
408 409 1.300971 CCGACAGGTGCCATGTTGAG 61.301 60.000 8.30 0.00 34.50 3.02
409 410 0.603707 CGACAGGTGCCATGTTGAGT 60.604 55.000 2.21 0.00 34.50 3.41
410 411 0.877071 GACAGGTGCCATGTTGAGTG 59.123 55.000 0.00 0.00 0.00 3.51
411 412 1.174712 ACAGGTGCCATGTTGAGTGC 61.175 55.000 0.00 0.00 0.00 4.40
412 413 1.968017 AGGTGCCATGTTGAGTGCG 60.968 57.895 0.00 0.00 0.00 5.34
413 414 2.562912 GTGCCATGTTGAGTGCGG 59.437 61.111 0.00 0.00 0.00 5.69
414 415 3.364441 TGCCATGTTGAGTGCGGC 61.364 61.111 0.00 0.00 43.28 6.53
415 416 4.120331 GCCATGTTGAGTGCGGCC 62.120 66.667 0.00 0.00 36.73 6.13
416 417 3.803082 CCATGTTGAGTGCGGCCG 61.803 66.667 24.05 24.05 0.00 6.13
417 418 2.741985 CATGTTGAGTGCGGCCGA 60.742 61.111 33.48 11.82 0.00 5.54
418 419 2.434884 ATGTTGAGTGCGGCCGAG 60.435 61.111 33.48 0.00 0.00 4.63
419 420 3.240134 ATGTTGAGTGCGGCCGAGT 62.240 57.895 33.48 17.17 0.00 4.18
420 421 3.112709 GTTGAGTGCGGCCGAGTC 61.113 66.667 33.48 24.54 0.00 3.36
421 422 4.373116 TTGAGTGCGGCCGAGTCC 62.373 66.667 33.48 12.13 0.00 3.85
430 431 4.681978 GCCGAGTCCGCTGTGGTT 62.682 66.667 7.20 0.00 39.52 3.67
431 432 2.030562 CCGAGTCCGCTGTGGTTT 59.969 61.111 7.20 0.00 39.52 3.27
432 433 1.290955 CCGAGTCCGCTGTGGTTTA 59.709 57.895 7.20 0.00 39.52 2.01
433 434 0.736325 CCGAGTCCGCTGTGGTTTAG 60.736 60.000 7.20 0.00 39.52 1.85
434 435 0.736325 CGAGTCCGCTGTGGTTTAGG 60.736 60.000 7.20 0.00 39.52 2.69
435 436 1.003718 AGTCCGCTGTGGTTTAGGC 60.004 57.895 7.20 0.00 39.52 3.93
436 437 1.302192 GTCCGCTGTGGTTTAGGCA 60.302 57.895 7.20 0.00 39.52 4.75
437 438 0.887387 GTCCGCTGTGGTTTAGGCAA 60.887 55.000 7.20 0.00 39.52 4.52
438 439 0.037590 TCCGCTGTGGTTTAGGCAAT 59.962 50.000 7.20 0.00 39.52 3.56
439 440 1.279558 TCCGCTGTGGTTTAGGCAATA 59.720 47.619 7.20 0.00 39.52 1.90
440 441 2.088423 CCGCTGTGGTTTAGGCAATAA 58.912 47.619 0.00 0.00 0.00 1.40
441 442 2.490115 CCGCTGTGGTTTAGGCAATAAA 59.510 45.455 0.00 0.00 0.00 1.40
442 443 3.427503 CCGCTGTGGTTTAGGCAATAAAG 60.428 47.826 0.00 0.00 34.01 1.85
443 444 3.427503 CGCTGTGGTTTAGGCAATAAAGG 60.428 47.826 0.00 0.00 34.01 3.11
444 445 3.676049 GCTGTGGTTTAGGCAATAAAGGC 60.676 47.826 0.00 0.00 34.01 4.35
445 446 3.501349 TGTGGTTTAGGCAATAAAGGCA 58.499 40.909 0.00 0.00 34.01 4.75
446 447 3.509575 TGTGGTTTAGGCAATAAAGGCAG 59.490 43.478 0.00 0.00 34.01 4.85
447 448 2.495669 TGGTTTAGGCAATAAAGGCAGC 59.504 45.455 0.00 0.00 34.01 5.25
448 449 2.760650 GGTTTAGGCAATAAAGGCAGCT 59.239 45.455 0.00 0.00 34.01 4.24
449 450 3.951680 GGTTTAGGCAATAAAGGCAGCTA 59.048 43.478 0.00 0.00 34.01 3.32
450 451 4.036852 GGTTTAGGCAATAAAGGCAGCTAG 59.963 45.833 0.00 0.00 34.01 3.42
451 452 4.503714 TTAGGCAATAAAGGCAGCTAGT 57.496 40.909 0.00 0.00 36.37 2.57
452 453 3.372440 AGGCAATAAAGGCAGCTAGTT 57.628 42.857 0.00 0.00 36.37 2.24
453 454 3.701664 AGGCAATAAAGGCAGCTAGTTT 58.298 40.909 0.00 0.00 36.37 2.66
454 455 4.089361 AGGCAATAAAGGCAGCTAGTTTT 58.911 39.130 0.00 0.00 36.37 2.43
455 456 4.158579 AGGCAATAAAGGCAGCTAGTTTTC 59.841 41.667 0.00 0.00 36.37 2.29
456 457 4.424626 GCAATAAAGGCAGCTAGTTTTCC 58.575 43.478 0.00 0.00 0.00 3.13
457 458 4.678044 GCAATAAAGGCAGCTAGTTTTCCC 60.678 45.833 0.00 0.00 0.00 3.97
458 459 1.924731 AAAGGCAGCTAGTTTTCCCC 58.075 50.000 0.00 0.00 0.00 4.81
459 460 1.076438 AAGGCAGCTAGTTTTCCCCT 58.924 50.000 0.00 0.00 0.00 4.79
460 461 0.621082 AGGCAGCTAGTTTTCCCCTC 59.379 55.000 0.00 0.00 0.00 4.30
461 462 0.328258 GGCAGCTAGTTTTCCCCTCA 59.672 55.000 0.00 0.00 0.00 3.86
462 463 1.271926 GGCAGCTAGTTTTCCCCTCAA 60.272 52.381 0.00 0.00 0.00 3.02
463 464 2.514803 GCAGCTAGTTTTCCCCTCAAA 58.485 47.619 0.00 0.00 0.00 2.69
464 465 2.890945 GCAGCTAGTTTTCCCCTCAAAA 59.109 45.455 0.00 0.00 0.00 2.44
465 466 3.320826 GCAGCTAGTTTTCCCCTCAAAAA 59.679 43.478 0.00 0.00 0.00 1.94
530 531 8.590204 TGTCAAATTTTAAGGAATAAGGGTTCC 58.410 33.333 0.00 0.00 46.49 3.62
538 539 2.222027 GAATAAGGGTTCCATCCAGCG 58.778 52.381 0.00 0.00 0.00 5.18
539 540 0.474184 ATAAGGGTTCCATCCAGCGG 59.526 55.000 0.00 0.00 0.00 5.52
544 545 1.253100 GGTTCCATCCAGCGGAAAAA 58.747 50.000 1.44 0.00 44.02 1.94
547 548 2.214376 TCCATCCAGCGGAAAAATGT 57.786 45.000 1.44 0.00 34.34 2.71
563 564 9.893305 CGGAAAAATGTATTATTCAGGGATAAC 57.107 33.333 0.00 0.00 0.00 1.89
675 678 4.907879 AGTCCACAGAGAAAAGCAAAAG 57.092 40.909 0.00 0.00 0.00 2.27
709 712 5.917462 ACCCCAAAAGAAAAGATGAACAAG 58.083 37.500 0.00 0.00 0.00 3.16
743 746 0.965439 GAGTCCCCATCTCCATCTCG 59.035 60.000 0.00 0.00 0.00 4.04
788 791 4.517934 CCCCTCCGCCGAGTCCTA 62.518 72.222 1.35 0.00 33.93 2.94
882 885 2.808206 GCATCCCCTCCACCTACCG 61.808 68.421 0.00 0.00 0.00 4.02
981 1010 4.082523 CGTCCGCATGTCAGGGGT 62.083 66.667 0.69 0.00 41.92 4.95
1110 1139 1.883084 GGAGGAGGTATTGCACGCG 60.883 63.158 3.53 3.53 0.00 6.01
1149 1184 4.276926 GCCTGGACCAGCTGATTAAATTAG 59.723 45.833 17.39 0.00 0.00 1.73
1155 1190 5.448654 ACCAGCTGATTAAATTAGCCATGA 58.551 37.500 17.39 0.00 42.31 3.07
1165 1200 8.682936 ATTAAATTAGCCATGACTAGGTTCTG 57.317 34.615 0.00 0.00 0.00 3.02
1166 1201 5.700402 AATTAGCCATGACTAGGTTCTGT 57.300 39.130 0.00 0.00 0.00 3.41
1177 1212 5.099042 ACTAGGTTCTGTTTGTGTCTGTT 57.901 39.130 0.00 0.00 0.00 3.16
1202 1237 3.181480 TGTGAGTTGTGACGAACTGATGA 60.181 43.478 5.40 0.00 36.27 2.92
1216 1251 7.298122 ACGAACTGATGACAAATTGTATGTTC 58.702 34.615 0.00 8.40 0.00 3.18
1225 1260 7.028962 TGACAAATTGTATGTTCTGCTTATGC 58.971 34.615 0.00 0.00 40.20 3.14
1270 1305 1.567357 TGACGATTCTGGTGATGGGA 58.433 50.000 0.00 0.00 0.00 4.37
1407 1442 9.466277 CTCTTTTTGAGTTACTTATGCGGGAGC 62.466 44.444 0.00 0.00 46.44 4.70
1530 1565 4.288626 GGGCTCATTGAAGGTGGGTATATA 59.711 45.833 0.00 0.00 0.00 0.86
1699 1736 8.194769 TGAGTAGATTATTTCATCGTGTTGCTA 58.805 33.333 0.00 0.00 0.00 3.49
1773 1810 6.697019 CACACATTTCGAAAATTCCTTCAGTT 59.303 34.615 15.66 0.00 0.00 3.16
1959 2087 3.071874 TGGTGAATGCTTGGGTTCTAG 57.928 47.619 0.00 0.00 0.00 2.43
2101 2229 5.869579 TGAACAGAGCTGTCCTATCTTTTT 58.130 37.500 3.27 0.00 44.13 1.94
2191 2322 8.773404 AGCATTCAGGACCGTAATTTATATAC 57.227 34.615 0.00 0.00 0.00 1.47
2422 2555 6.597562 GGTTTCCCCTTGGACTTTAATTTTT 58.402 36.000 0.00 0.00 41.57 1.94
2446 2579 6.671614 TGCATACTAACGAGGTTAAAATGG 57.328 37.500 0.00 0.00 0.00 3.16
2633 2766 2.739609 GCTGCTTTCATAATTGCCCACC 60.740 50.000 0.00 0.00 0.00 4.61
2811 2944 5.880332 TGAACAAGTTATAAGAGCCATCACC 59.120 40.000 0.00 0.00 0.00 4.02
3217 3353 2.656560 ATGAAACCGTCTCTTCTCCG 57.343 50.000 0.00 0.00 0.00 4.63
3428 3564 3.065371 GCTCCACCCATTGATTTACTTCG 59.935 47.826 0.00 0.00 0.00 3.79
3929 4065 1.992557 AGGTTAGCTTCCCCACATGAA 59.007 47.619 0.00 0.00 0.00 2.57
4465 4626 0.534873 GAGAAGACCTGAGCCCAGAC 59.465 60.000 0.00 0.00 43.02 3.51
4492 4653 2.167693 TCCATAAACAGCTCTACACCCG 59.832 50.000 0.00 0.00 0.00 5.28
4583 4744 4.980590 CTGTTGTTTTACAGTGCAGTGAA 58.019 39.130 28.02 14.25 40.48 3.18
4628 4789 9.424319 CTAACTGTATTCTGTACAATGACTGTT 57.576 33.333 17.85 17.85 39.64 3.16
4706 4868 2.172505 ACCATTAATCACGAGGCCATCA 59.827 45.455 5.01 0.00 0.00 3.07
4756 4918 3.251245 GCATGGAGCTTCAGAATCATGAG 59.749 47.826 0.00 0.00 41.15 2.90
4769 4931 5.407691 CAGAATCATGAGATACAATGGTCCG 59.592 44.000 0.09 0.00 33.08 4.79
4779 4941 1.202758 ACAATGGTCCGTGCTCAAGAA 60.203 47.619 0.00 0.00 0.00 2.52
4855 5017 5.051350 TTGCAGCCCATAGCAAACTAAGAA 61.051 41.667 0.00 0.00 46.65 2.52
4917 5079 6.974622 GCTCAACTGAAATGAAGAAAAACTCA 59.025 34.615 0.00 0.00 0.00 3.41
5014 5176 5.590663 AGAAGAAGAAAAGAAAAGAACGCCT 59.409 36.000 0.00 0.00 0.00 5.52
5051 5213 5.329035 AGTTGTCACTCAGCAAAATGTTT 57.671 34.783 0.00 0.00 0.00 2.83
5067 5229 9.875675 GCAAAATGTTTAACTTTTGATGCAATA 57.124 25.926 23.41 0.00 42.31 1.90
5153 5315 4.497300 CTGCAATTTTGAACCATCCGAAT 58.503 39.130 0.00 0.00 0.00 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.041107 GGCACCAAACATTCACATATGTTATT 58.959 34.615 5.37 0.00 45.44 1.40
1 2 6.154192 TGGCACCAAACATTCACATATGTTAT 59.846 34.615 5.37 0.00 45.44 1.89
4 5 3.831333 TGGCACCAAACATTCACATATGT 59.169 39.130 1.41 1.41 40.37 2.29
5 6 4.453177 TGGCACCAAACATTCACATATG 57.547 40.909 0.00 0.00 0.00 1.78
6 7 4.957954 AGATGGCACCAAACATTCACATAT 59.042 37.500 0.00 0.00 0.00 1.78
7 8 4.343231 AGATGGCACCAAACATTCACATA 58.657 39.130 0.00 0.00 0.00 2.29
8 9 3.167485 AGATGGCACCAAACATTCACAT 58.833 40.909 0.00 0.00 0.00 3.21
9 10 2.596346 AGATGGCACCAAACATTCACA 58.404 42.857 0.00 0.00 0.00 3.58
10 11 3.758554 ACTAGATGGCACCAAACATTCAC 59.241 43.478 0.00 0.00 0.00 3.18
11 12 4.032960 ACTAGATGGCACCAAACATTCA 57.967 40.909 0.00 0.00 0.00 2.57
12 13 4.458989 TGAACTAGATGGCACCAAACATTC 59.541 41.667 0.00 0.00 0.00 2.67
13 14 4.406456 TGAACTAGATGGCACCAAACATT 58.594 39.130 0.00 0.00 0.00 2.71
14 15 4.032960 TGAACTAGATGGCACCAAACAT 57.967 40.909 0.00 0.00 0.00 2.71
15 16 3.500448 TGAACTAGATGGCACCAAACA 57.500 42.857 0.00 0.00 0.00 2.83
16 17 3.428045 GCATGAACTAGATGGCACCAAAC 60.428 47.826 0.00 0.00 0.00 2.93
17 18 2.754552 GCATGAACTAGATGGCACCAAA 59.245 45.455 0.00 0.00 0.00 3.28
18 19 2.025981 AGCATGAACTAGATGGCACCAA 60.026 45.455 0.00 0.00 0.00 3.67
19 20 1.561076 AGCATGAACTAGATGGCACCA 59.439 47.619 0.00 0.00 0.00 4.17
20 21 2.338577 AGCATGAACTAGATGGCACC 57.661 50.000 0.00 0.00 0.00 5.01
21 22 5.755813 CAATAAGCATGAACTAGATGGCAC 58.244 41.667 0.00 0.00 0.00 5.01
22 23 4.276678 GCAATAAGCATGAACTAGATGGCA 59.723 41.667 0.00 0.00 44.79 4.92
23 24 4.791974 GCAATAAGCATGAACTAGATGGC 58.208 43.478 0.00 0.00 44.79 4.40
36 37 8.317679 ATTTACAAAAATGGGTAGCAATAAGCA 58.682 29.630 0.00 0.00 38.70 3.91
37 38 8.716646 ATTTACAAAAATGGGTAGCAATAAGC 57.283 30.769 0.00 0.00 37.43 3.09
72 73 6.088749 CGATTTGTTGTGCGATGGAATAAAAA 59.911 34.615 0.00 0.00 0.00 1.94
73 74 5.570973 CGATTTGTTGTGCGATGGAATAAAA 59.429 36.000 0.00 0.00 0.00 1.52
74 75 5.092105 CGATTTGTTGTGCGATGGAATAAA 58.908 37.500 0.00 0.00 0.00 1.40
75 76 4.155099 ACGATTTGTTGTGCGATGGAATAA 59.845 37.500 0.00 0.00 0.00 1.40
76 77 3.687212 ACGATTTGTTGTGCGATGGAATA 59.313 39.130 0.00 0.00 0.00 1.75
77 78 2.487762 ACGATTTGTTGTGCGATGGAAT 59.512 40.909 0.00 0.00 0.00 3.01
78 79 1.876799 ACGATTTGTTGTGCGATGGAA 59.123 42.857 0.00 0.00 0.00 3.53
79 80 1.196581 CACGATTTGTTGTGCGATGGA 59.803 47.619 0.00 0.00 0.00 3.41
80 81 1.196581 TCACGATTTGTTGTGCGATGG 59.803 47.619 0.00 0.00 36.06 3.51
81 82 2.592796 TCACGATTTGTTGTGCGATG 57.407 45.000 0.00 0.00 36.06 3.84
82 83 4.786292 GCATATCACGATTTGTTGTGCGAT 60.786 41.667 0.00 0.00 33.82 4.58
83 84 3.485051 GCATATCACGATTTGTTGTGCGA 60.485 43.478 0.00 0.00 33.82 5.10
84 85 2.777845 GCATATCACGATTTGTTGTGCG 59.222 45.455 0.00 0.00 33.82 5.34
85 86 3.757184 TGCATATCACGATTTGTTGTGC 58.243 40.909 0.00 0.00 40.62 4.57
86 87 5.228427 CACATGCATATCACGATTTGTTGTG 59.772 40.000 0.00 14.58 34.09 3.33
87 88 5.334319 CACATGCATATCACGATTTGTTGT 58.666 37.500 0.00 0.00 0.00 3.32
88 89 4.205588 GCACATGCATATCACGATTTGTTG 59.794 41.667 0.00 0.00 41.59 3.33
89 90 4.096833 AGCACATGCATATCACGATTTGTT 59.903 37.500 6.64 0.00 45.16 2.83
90 91 3.628942 AGCACATGCATATCACGATTTGT 59.371 39.130 6.64 0.00 45.16 2.83
91 92 3.972502 CAGCACATGCATATCACGATTTG 59.027 43.478 6.64 0.00 45.16 2.32
92 93 3.878699 TCAGCACATGCATATCACGATTT 59.121 39.130 6.64 0.00 45.16 2.17
93 94 3.469739 TCAGCACATGCATATCACGATT 58.530 40.909 6.64 0.00 45.16 3.34
94 95 3.116079 TCAGCACATGCATATCACGAT 57.884 42.857 6.64 0.00 45.16 3.73
95 96 2.600470 TCAGCACATGCATATCACGA 57.400 45.000 6.64 0.00 45.16 4.35
96 97 3.547413 CCTTTCAGCACATGCATATCACG 60.547 47.826 6.64 0.00 45.16 4.35
97 98 3.794475 GCCTTTCAGCACATGCATATCAC 60.794 47.826 6.64 0.00 45.16 3.06
98 99 2.359848 GCCTTTCAGCACATGCATATCA 59.640 45.455 6.64 0.00 45.16 2.15
99 100 2.621998 AGCCTTTCAGCACATGCATATC 59.378 45.455 6.64 0.00 45.16 1.63
100 101 2.662866 AGCCTTTCAGCACATGCATAT 58.337 42.857 6.64 0.00 45.16 1.78
101 102 2.133281 AGCCTTTCAGCACATGCATA 57.867 45.000 6.64 0.00 45.16 3.14
102 103 2.133281 TAGCCTTTCAGCACATGCAT 57.867 45.000 6.64 0.00 45.16 3.96
103 104 1.908344 TTAGCCTTTCAGCACATGCA 58.092 45.000 6.64 0.00 45.16 3.96
104 105 3.302365 TTTTAGCCTTTCAGCACATGC 57.698 42.857 0.00 0.00 42.49 4.06
105 106 4.624024 CACATTTTAGCCTTTCAGCACATG 59.376 41.667 0.00 0.00 34.23 3.21
106 107 4.322198 CCACATTTTAGCCTTTCAGCACAT 60.322 41.667 0.00 0.00 34.23 3.21
107 108 3.005684 CCACATTTTAGCCTTTCAGCACA 59.994 43.478 0.00 0.00 34.23 4.57
108 109 3.005791 ACCACATTTTAGCCTTTCAGCAC 59.994 43.478 0.00 0.00 34.23 4.40
109 110 3.230134 ACCACATTTTAGCCTTTCAGCA 58.770 40.909 0.00 0.00 34.23 4.41
110 111 3.942130 ACCACATTTTAGCCTTTCAGC 57.058 42.857 0.00 0.00 0.00 4.26
111 112 8.682936 AGATATACCACATTTTAGCCTTTCAG 57.317 34.615 0.00 0.00 0.00 3.02
112 113 9.474313 AAAGATATACCACATTTTAGCCTTTCA 57.526 29.630 0.00 0.00 0.00 2.69
113 114 9.736023 CAAAGATATACCACATTTTAGCCTTTC 57.264 33.333 0.00 0.00 0.00 2.62
114 115 9.255029 ACAAAGATATACCACATTTTAGCCTTT 57.745 29.630 0.00 0.00 0.00 3.11
115 116 8.823220 ACAAAGATATACCACATTTTAGCCTT 57.177 30.769 0.00 0.00 0.00 4.35
116 117 8.686334 CAACAAAGATATACCACATTTTAGCCT 58.314 33.333 0.00 0.00 0.00 4.58
117 118 8.682710 TCAACAAAGATATACCACATTTTAGCC 58.317 33.333 0.00 0.00 0.00 3.93
137 138 9.979578 AGCATGTATACTTCAAAATTTCAACAA 57.020 25.926 4.17 0.00 0.00 2.83
138 139 9.409312 CAGCATGTATACTTCAAAATTTCAACA 57.591 29.630 4.17 0.00 0.00 3.33
139 140 9.624697 TCAGCATGTATACTTCAAAATTTCAAC 57.375 29.630 4.17 0.00 37.40 3.18
147 148 9.979578 ACAAAATTTCAGCATGTATACTTCAAA 57.020 25.926 4.17 0.00 37.40 2.69
196 197 5.821516 TTCACACTTCACCGTGTATTTTT 57.178 34.783 0.00 0.00 45.74 1.94
197 198 6.205784 CAATTCACACTTCACCGTGTATTTT 58.794 36.000 0.00 0.00 45.74 1.82
198 199 5.278266 CCAATTCACACTTCACCGTGTATTT 60.278 40.000 0.00 0.00 45.74 1.40
199 200 4.215399 CCAATTCACACTTCACCGTGTATT 59.785 41.667 0.00 0.00 45.74 1.89
200 201 3.751175 CCAATTCACACTTCACCGTGTAT 59.249 43.478 0.00 0.00 45.74 2.29
201 202 3.135225 CCAATTCACACTTCACCGTGTA 58.865 45.455 0.00 0.00 45.74 2.90
203 204 1.266718 CCCAATTCACACTTCACCGTG 59.733 52.381 0.00 0.00 40.67 4.94
204 205 1.133915 ACCCAATTCACACTTCACCGT 60.134 47.619 0.00 0.00 0.00 4.83
205 206 1.604604 ACCCAATTCACACTTCACCG 58.395 50.000 0.00 0.00 0.00 4.94
206 207 3.506067 CCTTACCCAATTCACACTTCACC 59.494 47.826 0.00 0.00 0.00 4.02
207 208 4.023193 CACCTTACCCAATTCACACTTCAC 60.023 45.833 0.00 0.00 0.00 3.18
208 209 4.141287 CACCTTACCCAATTCACACTTCA 58.859 43.478 0.00 0.00 0.00 3.02
209 210 3.506067 CCACCTTACCCAATTCACACTTC 59.494 47.826 0.00 0.00 0.00 3.01
210 211 3.496331 CCACCTTACCCAATTCACACTT 58.504 45.455 0.00 0.00 0.00 3.16
211 212 2.817839 GCCACCTTACCCAATTCACACT 60.818 50.000 0.00 0.00 0.00 3.55
212 213 1.544246 GCCACCTTACCCAATTCACAC 59.456 52.381 0.00 0.00 0.00 3.82
213 214 1.549037 GGCCACCTTACCCAATTCACA 60.549 52.381 0.00 0.00 0.00 3.58
214 215 1.182667 GGCCACCTTACCCAATTCAC 58.817 55.000 0.00 0.00 0.00 3.18
215 216 0.322997 CGGCCACCTTACCCAATTCA 60.323 55.000 2.24 0.00 0.00 2.57
216 217 0.034863 TCGGCCACCTTACCCAATTC 60.035 55.000 2.24 0.00 0.00 2.17
217 218 0.034477 CTCGGCCACCTTACCCAATT 60.034 55.000 2.24 0.00 0.00 2.32
218 219 0.912487 TCTCGGCCACCTTACCCAAT 60.912 55.000 2.24 0.00 0.00 3.16
219 220 1.128809 TTCTCGGCCACCTTACCCAA 61.129 55.000 2.24 0.00 0.00 4.12
220 221 1.536907 TTCTCGGCCACCTTACCCA 60.537 57.895 2.24 0.00 0.00 4.51
221 222 1.221021 CTTCTCGGCCACCTTACCC 59.779 63.158 2.24 0.00 0.00 3.69
222 223 1.221021 CCTTCTCGGCCACCTTACC 59.779 63.158 2.24 0.00 0.00 2.85
223 224 1.221021 CCCTTCTCGGCCACCTTAC 59.779 63.158 2.24 0.00 0.00 2.34
224 225 0.041535 TACCCTTCTCGGCCACCTTA 59.958 55.000 2.24 0.00 0.00 2.69
225 226 0.620700 ATACCCTTCTCGGCCACCTT 60.621 55.000 2.24 0.00 0.00 3.50
226 227 0.620700 AATACCCTTCTCGGCCACCT 60.621 55.000 2.24 0.00 0.00 4.00
227 228 0.255033 AAATACCCTTCTCGGCCACC 59.745 55.000 2.24 0.00 0.00 4.61
228 229 2.124277 AAAATACCCTTCTCGGCCAC 57.876 50.000 2.24 0.00 0.00 5.01
229 230 2.891191 AAAAATACCCTTCTCGGCCA 57.109 45.000 2.24 0.00 0.00 5.36
230 231 2.947652 GGTAAAAATACCCTTCTCGGCC 59.052 50.000 0.00 0.00 34.06 6.13
263 264 4.910585 CCATACCCGGCCGAGTGC 62.911 72.222 30.73 0.00 40.16 4.40
264 265 4.235762 CCCATACCCGGCCGAGTG 62.236 72.222 30.73 18.38 0.00 3.51
265 266 2.668106 ATACCCATACCCGGCCGAGT 62.668 60.000 30.73 24.61 0.00 4.18
266 267 1.911766 ATACCCATACCCGGCCGAG 60.912 63.158 30.73 18.52 0.00 4.63
267 268 2.202053 ATACCCATACCCGGCCGA 59.798 61.111 30.73 7.23 0.00 5.54
268 269 2.345991 CATACCCATACCCGGCCG 59.654 66.667 21.04 21.04 0.00 6.13
269 270 2.754375 CCATACCCATACCCGGCC 59.246 66.667 0.00 0.00 0.00 6.13
270 271 1.420532 TTCCCATACCCATACCCGGC 61.421 60.000 0.00 0.00 0.00 6.13
271 272 0.399075 GTTCCCATACCCATACCCGG 59.601 60.000 0.00 0.00 0.00 5.73
272 273 1.133363 TGTTCCCATACCCATACCCG 58.867 55.000 0.00 0.00 0.00 5.28
273 274 3.895041 CAATTGTTCCCATACCCATACCC 59.105 47.826 0.00 0.00 0.00 3.69
274 275 4.798882 TCAATTGTTCCCATACCCATACC 58.201 43.478 5.13 0.00 0.00 2.73
275 276 6.406512 GGTTTCAATTGTTCCCATACCCATAC 60.407 42.308 5.13 0.00 0.00 2.39
276 277 5.659079 GGTTTCAATTGTTCCCATACCCATA 59.341 40.000 5.13 0.00 0.00 2.74
277 278 4.469586 GGTTTCAATTGTTCCCATACCCAT 59.530 41.667 5.13 0.00 0.00 4.00
278 279 3.835395 GGTTTCAATTGTTCCCATACCCA 59.165 43.478 5.13 0.00 0.00 4.51
279 280 3.196901 GGGTTTCAATTGTTCCCATACCC 59.803 47.826 21.26 14.75 38.15 3.69
280 281 3.119280 CGGGTTTCAATTGTTCCCATACC 60.119 47.826 23.69 12.65 38.15 2.73
281 282 3.759618 TCGGGTTTCAATTGTTCCCATAC 59.240 43.478 23.69 6.28 38.15 2.39
282 283 4.013728 CTCGGGTTTCAATTGTTCCCATA 58.986 43.478 23.69 15.29 38.15 2.74
283 284 2.825532 CTCGGGTTTCAATTGTTCCCAT 59.174 45.455 23.69 0.00 38.15 4.00
284 285 2.235016 CTCGGGTTTCAATTGTTCCCA 58.765 47.619 23.69 15.06 38.15 4.37
285 286 1.544246 CCTCGGGTTTCAATTGTTCCC 59.456 52.381 18.35 18.35 35.22 3.97
286 287 2.030274 CACCTCGGGTTTCAATTGTTCC 60.030 50.000 5.13 6.56 31.02 3.62
287 288 2.607038 GCACCTCGGGTTTCAATTGTTC 60.607 50.000 5.13 0.00 31.02 3.18
288 289 1.339929 GCACCTCGGGTTTCAATTGTT 59.660 47.619 5.13 0.00 31.02 2.83
289 290 0.958822 GCACCTCGGGTTTCAATTGT 59.041 50.000 5.13 0.00 31.02 2.71
290 291 0.109781 CGCACCTCGGGTTTCAATTG 60.110 55.000 0.00 0.00 31.02 2.32
291 292 2.253513 CGCACCTCGGGTTTCAATT 58.746 52.632 0.00 0.00 31.02 2.32
292 293 3.981308 CGCACCTCGGGTTTCAAT 58.019 55.556 0.00 0.00 31.02 2.57
301 302 2.048023 TACCTGTACCCGCACCTCG 61.048 63.158 0.00 0.00 38.08 4.63
302 303 1.252904 TGTACCTGTACCCGCACCTC 61.253 60.000 5.07 0.00 35.26 3.85
303 304 0.616679 ATGTACCTGTACCCGCACCT 60.617 55.000 5.07 0.00 35.26 4.00
304 305 0.461339 CATGTACCTGTACCCGCACC 60.461 60.000 5.07 0.00 35.26 5.01
305 306 0.248289 ACATGTACCTGTACCCGCAC 59.752 55.000 0.00 0.00 35.26 5.34
306 307 1.477700 GTACATGTACCTGTACCCGCA 59.522 52.381 23.03 0.00 43.66 5.69
307 308 1.534595 CGTACATGTACCTGTACCCGC 60.535 57.143 26.37 9.93 45.63 6.13
308 309 1.066002 CCGTACATGTACCTGTACCCG 59.934 57.143 26.37 18.89 45.63 5.28
309 310 1.410153 CCCGTACATGTACCTGTACCC 59.590 57.143 26.37 10.76 45.63 3.69
310 311 2.102578 ACCCGTACATGTACCTGTACC 58.897 52.381 26.37 14.31 45.63 3.34
311 312 3.874392 AACCCGTACATGTACCTGTAC 57.126 47.619 26.37 23.83 45.18 2.90
312 313 3.831333 TCAAACCCGTACATGTACCTGTA 59.169 43.478 26.37 6.88 32.61 2.74
313 314 2.633967 TCAAACCCGTACATGTACCTGT 59.366 45.455 26.37 20.64 32.61 4.00
314 315 3.259064 CTCAAACCCGTACATGTACCTG 58.741 50.000 26.37 20.07 32.61 4.00
315 316 2.354403 GCTCAAACCCGTACATGTACCT 60.354 50.000 26.37 9.53 32.61 3.08
316 317 2.004733 GCTCAAACCCGTACATGTACC 58.995 52.381 26.37 11.73 32.61 3.34
317 318 1.657094 CGCTCAAACCCGTACATGTAC 59.343 52.381 23.53 23.53 0.00 2.90
318 319 1.545136 TCGCTCAAACCCGTACATGTA 59.455 47.619 0.08 0.08 0.00 2.29
319 320 0.319083 TCGCTCAAACCCGTACATGT 59.681 50.000 2.69 2.69 0.00 3.21
320 321 1.434555 TTCGCTCAAACCCGTACATG 58.565 50.000 0.00 0.00 0.00 3.21
321 322 2.172851 TTTCGCTCAAACCCGTACAT 57.827 45.000 0.00 0.00 0.00 2.29
322 323 1.950828 TTTTCGCTCAAACCCGTACA 58.049 45.000 0.00 0.00 0.00 2.90
323 324 3.547649 ATTTTTCGCTCAAACCCGTAC 57.452 42.857 0.00 0.00 0.00 3.67
324 325 5.411977 TCAATATTTTTCGCTCAAACCCGTA 59.588 36.000 0.00 0.00 0.00 4.02
325 326 4.216687 TCAATATTTTTCGCTCAAACCCGT 59.783 37.500 0.00 0.00 0.00 5.28
326 327 4.728534 TCAATATTTTTCGCTCAAACCCG 58.271 39.130 0.00 0.00 0.00 5.28
327 328 5.949735 TCTCAATATTTTTCGCTCAAACCC 58.050 37.500 0.00 0.00 0.00 4.11
328 329 6.473455 CCATCTCAATATTTTTCGCTCAAACC 59.527 38.462 0.00 0.00 0.00 3.27
329 330 6.473455 CCCATCTCAATATTTTTCGCTCAAAC 59.527 38.462 0.00 0.00 0.00 2.93
330 331 6.152661 ACCCATCTCAATATTTTTCGCTCAAA 59.847 34.615 0.00 0.00 0.00 2.69
331 332 5.652014 ACCCATCTCAATATTTTTCGCTCAA 59.348 36.000 0.00 0.00 0.00 3.02
332 333 5.192927 ACCCATCTCAATATTTTTCGCTCA 58.807 37.500 0.00 0.00 0.00 4.26
333 334 5.757850 ACCCATCTCAATATTTTTCGCTC 57.242 39.130 0.00 0.00 0.00 5.03
334 335 6.263168 CCTTACCCATCTCAATATTTTTCGCT 59.737 38.462 0.00 0.00 0.00 4.93
335 336 6.438763 CCTTACCCATCTCAATATTTTTCGC 58.561 40.000 0.00 0.00 0.00 4.70
336 337 6.546034 ACCCTTACCCATCTCAATATTTTTCG 59.454 38.462 0.00 0.00 0.00 3.46
337 338 7.898014 ACCCTTACCCATCTCAATATTTTTC 57.102 36.000 0.00 0.00 0.00 2.29
338 339 8.539544 CAAACCCTTACCCATCTCAATATTTTT 58.460 33.333 0.00 0.00 0.00 1.94
339 340 7.125659 CCAAACCCTTACCCATCTCAATATTTT 59.874 37.037 0.00 0.00 0.00 1.82
340 341 6.611236 CCAAACCCTTACCCATCTCAATATTT 59.389 38.462 0.00 0.00 0.00 1.40
341 342 6.068498 TCCAAACCCTTACCCATCTCAATATT 60.068 38.462 0.00 0.00 0.00 1.28
342 343 5.435041 TCCAAACCCTTACCCATCTCAATAT 59.565 40.000 0.00 0.00 0.00 1.28
343 344 4.791334 TCCAAACCCTTACCCATCTCAATA 59.209 41.667 0.00 0.00 0.00 1.90
344 345 3.596046 TCCAAACCCTTACCCATCTCAAT 59.404 43.478 0.00 0.00 0.00 2.57
345 346 2.990284 TCCAAACCCTTACCCATCTCAA 59.010 45.455 0.00 0.00 0.00 3.02
346 347 2.307686 GTCCAAACCCTTACCCATCTCA 59.692 50.000 0.00 0.00 0.00 3.27
347 348 2.679930 CGTCCAAACCCTTACCCATCTC 60.680 54.545 0.00 0.00 0.00 2.75
348 349 1.280998 CGTCCAAACCCTTACCCATCT 59.719 52.381 0.00 0.00 0.00 2.90
349 350 1.279846 TCGTCCAAACCCTTACCCATC 59.720 52.381 0.00 0.00 0.00 3.51
350 351 1.003928 GTCGTCCAAACCCTTACCCAT 59.996 52.381 0.00 0.00 0.00 4.00
351 352 0.397564 GTCGTCCAAACCCTTACCCA 59.602 55.000 0.00 0.00 0.00 4.51
352 353 0.321919 GGTCGTCCAAACCCTTACCC 60.322 60.000 0.00 0.00 0.00 3.69
353 354 0.397564 TGGTCGTCCAAACCCTTACC 59.602 55.000 0.00 0.00 41.25 2.85
364 365 0.878961 GGTGCGGATAATGGTCGTCC 60.879 60.000 0.00 0.00 0.00 4.79
365 366 0.878961 GGGTGCGGATAATGGTCGTC 60.879 60.000 0.00 0.00 0.00 4.20
366 367 1.145377 GGGTGCGGATAATGGTCGT 59.855 57.895 0.00 0.00 0.00 4.34
367 368 1.954146 CGGGTGCGGATAATGGTCG 60.954 63.158 0.00 0.00 0.00 4.79
368 369 0.179067 TTCGGGTGCGGATAATGGTC 60.179 55.000 0.00 0.00 0.00 4.02
369 370 0.463116 GTTCGGGTGCGGATAATGGT 60.463 55.000 0.00 0.00 0.00 3.55
370 371 1.164041 GGTTCGGGTGCGGATAATGG 61.164 60.000 0.00 0.00 0.00 3.16
371 372 1.164041 GGGTTCGGGTGCGGATAATG 61.164 60.000 0.00 0.00 0.00 1.90
372 373 1.147600 GGGTTCGGGTGCGGATAAT 59.852 57.895 0.00 0.00 0.00 1.28
373 374 2.585698 GGGTTCGGGTGCGGATAA 59.414 61.111 0.00 0.00 0.00 1.75
374 375 3.840594 CGGGTTCGGGTGCGGATA 61.841 66.667 0.00 0.00 0.00 2.59
388 389 2.034066 AACATGGCACCTGTCGGG 59.966 61.111 0.00 0.00 41.89 5.14
389 390 1.300971 CTCAACATGGCACCTGTCGG 61.301 60.000 0.00 0.00 0.00 4.79
390 391 0.603707 ACTCAACATGGCACCTGTCG 60.604 55.000 0.00 0.00 0.00 4.35
391 392 0.877071 CACTCAACATGGCACCTGTC 59.123 55.000 0.00 0.00 0.00 3.51
392 393 1.174712 GCACTCAACATGGCACCTGT 61.175 55.000 0.00 0.00 0.00 4.00
393 394 1.582968 GCACTCAACATGGCACCTG 59.417 57.895 0.00 0.00 0.00 4.00
394 395 1.968017 CGCACTCAACATGGCACCT 60.968 57.895 0.00 0.00 0.00 4.00
395 396 2.562912 CGCACTCAACATGGCACC 59.437 61.111 0.00 0.00 0.00 5.01
396 397 2.562912 CCGCACTCAACATGGCAC 59.437 61.111 0.00 0.00 0.00 5.01
397 398 3.364441 GCCGCACTCAACATGGCA 61.364 61.111 0.00 0.00 45.06 4.92
398 399 4.120331 GGCCGCACTCAACATGGC 62.120 66.667 0.00 0.00 44.98 4.40
399 400 3.803082 CGGCCGCACTCAACATGG 61.803 66.667 14.67 0.00 0.00 3.66
400 401 2.741985 TCGGCCGCACTCAACATG 60.742 61.111 23.51 0.00 0.00 3.21
401 402 2.434884 CTCGGCCGCACTCAACAT 60.435 61.111 23.51 0.00 0.00 2.71
402 403 3.858868 GACTCGGCCGCACTCAACA 62.859 63.158 23.51 0.00 0.00 3.33
403 404 3.112709 GACTCGGCCGCACTCAAC 61.113 66.667 23.51 3.37 0.00 3.18
404 405 4.373116 GGACTCGGCCGCACTCAA 62.373 66.667 23.51 0.00 0.00 3.02
413 414 2.775032 TAAACCACAGCGGACTCGGC 62.775 60.000 0.31 0.31 38.63 5.54
414 415 0.736325 CTAAACCACAGCGGACTCGG 60.736 60.000 0.00 0.00 38.63 4.63
415 416 0.736325 CCTAAACCACAGCGGACTCG 60.736 60.000 0.00 0.00 38.63 4.18
416 417 1.019805 GCCTAAACCACAGCGGACTC 61.020 60.000 0.00 0.00 38.63 3.36
417 418 1.003718 GCCTAAACCACAGCGGACT 60.004 57.895 0.00 0.00 38.63 3.85
418 419 0.887387 TTGCCTAAACCACAGCGGAC 60.887 55.000 0.00 0.00 38.63 4.79
419 420 0.037590 ATTGCCTAAACCACAGCGGA 59.962 50.000 0.00 0.00 38.63 5.54
420 421 1.745232 TATTGCCTAAACCACAGCGG 58.255 50.000 0.00 0.00 42.50 5.52
421 422 3.427503 CCTTTATTGCCTAAACCACAGCG 60.428 47.826 0.00 0.00 0.00 5.18
422 423 3.676049 GCCTTTATTGCCTAAACCACAGC 60.676 47.826 0.00 0.00 0.00 4.40
423 424 3.509575 TGCCTTTATTGCCTAAACCACAG 59.490 43.478 0.00 0.00 0.00 3.66
424 425 3.501349 TGCCTTTATTGCCTAAACCACA 58.499 40.909 0.00 0.00 0.00 4.17
425 426 3.676049 GCTGCCTTTATTGCCTAAACCAC 60.676 47.826 0.00 0.00 0.00 4.16
426 427 2.495669 GCTGCCTTTATTGCCTAAACCA 59.504 45.455 0.00 0.00 0.00 3.67
427 428 2.760650 AGCTGCCTTTATTGCCTAAACC 59.239 45.455 0.00 0.00 0.00 3.27
428 429 4.640647 ACTAGCTGCCTTTATTGCCTAAAC 59.359 41.667 0.00 0.00 0.00 2.01
429 430 4.855340 ACTAGCTGCCTTTATTGCCTAAA 58.145 39.130 0.00 0.00 0.00 1.85
430 431 4.503714 ACTAGCTGCCTTTATTGCCTAA 57.496 40.909 0.00 0.00 0.00 2.69
431 432 4.503714 AACTAGCTGCCTTTATTGCCTA 57.496 40.909 0.00 0.00 0.00 3.93
432 433 3.372440 AACTAGCTGCCTTTATTGCCT 57.628 42.857 0.00 0.00 0.00 4.75
433 434 4.424626 GAAAACTAGCTGCCTTTATTGCC 58.575 43.478 0.00 0.00 0.00 4.52
434 435 4.424626 GGAAAACTAGCTGCCTTTATTGC 58.575 43.478 0.00 0.00 0.00 3.56
435 436 4.142160 GGGGAAAACTAGCTGCCTTTATTG 60.142 45.833 0.00 0.00 0.00 1.90
436 437 4.023980 GGGGAAAACTAGCTGCCTTTATT 58.976 43.478 0.00 0.00 0.00 1.40
437 438 3.269643 AGGGGAAAACTAGCTGCCTTTAT 59.730 43.478 0.00 0.00 0.00 1.40
438 439 2.647802 AGGGGAAAACTAGCTGCCTTTA 59.352 45.455 0.00 0.00 0.00 1.85
439 440 1.429299 AGGGGAAAACTAGCTGCCTTT 59.571 47.619 0.00 0.00 0.00 3.11
440 441 1.004862 GAGGGGAAAACTAGCTGCCTT 59.995 52.381 0.00 0.00 0.00 4.35
441 442 0.621082 GAGGGGAAAACTAGCTGCCT 59.379 55.000 0.00 0.00 0.00 4.75
442 443 0.328258 TGAGGGGAAAACTAGCTGCC 59.672 55.000 0.00 0.00 0.00 4.85
443 444 2.200373 TTGAGGGGAAAACTAGCTGC 57.800 50.000 0.00 0.00 0.00 5.25
465 466 9.921637 CTAAGAGTCTCTCATGTCTAAGTTTTT 57.078 33.333 1.96 0.00 32.06 1.94
466 467 9.303116 TCTAAGAGTCTCTCATGTCTAAGTTTT 57.697 33.333 1.96 0.00 32.06 2.43
467 468 8.871629 TCTAAGAGTCTCTCATGTCTAAGTTT 57.128 34.615 1.96 0.00 32.06 2.66
530 531 7.424803 TGAATAATACATTTTTCCGCTGGATG 58.575 34.615 0.00 0.00 30.06 3.51
536 537 6.385649 TCCCTGAATAATACATTTTTCCGC 57.614 37.500 3.65 0.00 30.06 5.54
599 601 4.384868 GGCTGGTTTTATGTAGGCCTCTAA 60.385 45.833 9.68 3.07 35.73 2.10
600 602 3.135895 GGCTGGTTTTATGTAGGCCTCTA 59.864 47.826 9.68 0.00 35.73 2.43
601 603 2.092375 GGCTGGTTTTATGTAGGCCTCT 60.092 50.000 9.68 0.00 35.73 3.69
602 604 2.298610 GGCTGGTTTTATGTAGGCCTC 58.701 52.381 9.68 1.02 35.73 4.70
709 712 2.758423 GGGACTCTCTCCTTCTTCTGTC 59.242 54.545 0.00 0.00 39.39 3.51
743 746 3.964031 TGAGAAGGGAAGAGATAAGGAGC 59.036 47.826 0.00 0.00 0.00 4.70
858 861 0.988678 GGTGGAGGGGATGCTTACCT 60.989 60.000 0.03 0.00 37.31 3.08
970 999 1.879575 TCCTCCTTACCCCTGACATG 58.120 55.000 0.00 0.00 0.00 3.21
971 1000 2.197465 GTTCCTCCTTACCCCTGACAT 58.803 52.381 0.00 0.00 0.00 3.06
981 1010 2.284112 ACCGCCCGTTCCTCCTTA 60.284 61.111 0.00 0.00 0.00 2.69
1110 1139 1.404035 CAGGCAAGGGGCGTTAAATAC 59.596 52.381 0.00 0.00 46.16 1.89
1149 1184 3.189287 CACAAACAGAACCTAGTCATGGC 59.811 47.826 0.00 0.00 0.00 4.40
1155 1190 4.755266 ACAGACACAAACAGAACCTAGT 57.245 40.909 0.00 0.00 0.00 2.57
1165 1200 6.468956 CACAACTCACAATAACAGACACAAAC 59.531 38.462 0.00 0.00 0.00 2.93
1166 1201 6.372937 TCACAACTCACAATAACAGACACAAA 59.627 34.615 0.00 0.00 0.00 2.83
1177 1212 4.939271 TCAGTTCGTCACAACTCACAATA 58.061 39.130 0.00 0.00 34.17 1.90
1202 1237 7.031372 CAGCATAAGCAGAACATACAATTTGT 58.969 34.615 7.30 7.30 45.49 2.83
1216 1251 6.426980 TTCTTAACATCACAGCATAAGCAG 57.573 37.500 0.00 0.00 45.49 4.24
1225 1260 5.179929 TGTGCTCACATTCTTAACATCACAG 59.820 40.000 0.00 0.00 36.21 3.66
1270 1305 3.503839 TTCCCCACACCGCCCTTT 61.504 61.111 0.00 0.00 0.00 3.11
1407 1442 1.701431 GAAACAACATTCAACGACGCG 59.299 47.619 3.53 3.53 0.00 6.01
1417 1452 5.413833 CCTCAGACTGCATAGAAACAACATT 59.586 40.000 0.00 0.00 0.00 2.71
1530 1565 0.694771 TCTCCACAGCCTGCTCATTT 59.305 50.000 0.00 0.00 0.00 2.32
1959 2087 7.645340 CCAATGGAAGAAATTGATACGTTGATC 59.355 37.037 0.00 0.00 37.22 2.92
2101 2229 7.075121 CAGTAATGATTTAACGACAGCAACAA 58.925 34.615 0.00 0.00 0.00 2.83
2422 2555 6.655848 ACCATTTTAACCTCGTTAGTATGCAA 59.344 34.615 0.00 0.00 29.41 4.08
2446 2579 1.081094 AATAAGCACACGCGGGTTAC 58.919 50.000 13.62 7.36 45.49 2.50
2496 2629 8.620177 TCTAGAAAGGGAAAATTAATCCAAGGA 58.380 33.333 11.23 0.00 38.80 3.36
2633 2766 9.030301 TGATATACAGATTGTATGACAACAACG 57.970 33.333 11.04 0.00 42.93 4.10
2811 2944 5.362263 CAAATGGCCTTCCCTAATGAATTG 58.638 41.667 3.32 0.00 0.00 2.32
3217 3353 4.315803 TCAAGATCAAACCGAAAGAGGAC 58.684 43.478 0.00 0.00 34.73 3.85
3428 3564 4.143094 GCTCGTAATTGAAGAGTGTGTTCC 60.143 45.833 7.96 0.00 36.17 3.62
3494 3630 6.985188 AAGTACGACCGTTTATCTACAGTA 57.015 37.500 0.00 0.00 0.00 2.74
3948 4084 5.978919 ACAAATGATATGCCAAGTTTATGCG 59.021 36.000 0.00 0.00 0.00 4.73
4492 4653 2.621998 CAATCACCATGGCTTCTGATCC 59.378 50.000 13.04 0.00 0.00 3.36
4706 4868 4.619863 GCATGAAAGCAAATCCAGTCACAT 60.620 41.667 0.00 0.00 0.00 3.21
4756 4918 2.309528 TGAGCACGGACCATTGTATC 57.690 50.000 0.00 0.00 0.00 2.24
4779 4941 6.083098 TGCAGTGCAAGTGTACATATTTTT 57.917 33.333 17.26 0.00 40.18 1.94
4795 4957 0.029834 CCTGTTGAACTGTGCAGTGC 59.970 55.000 8.58 8.58 41.58 4.40
4938 5100 2.451132 CTAACCAGATACGTGCACTCG 58.549 52.381 16.19 5.07 0.00 4.18
5067 5229 2.948720 GCGACAAGGAGGGAGTGCT 61.949 63.158 0.00 0.00 0.00 4.40
5068 5230 2.435059 GCGACAAGGAGGGAGTGC 60.435 66.667 0.00 0.00 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.