Multiple sequence alignment - TraesCS4B01G227000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G227000 chr4B 100.000 4734 0 0 1 4734 475196626 475191893 0.000000e+00 8743.0
1 TraesCS4B01G227000 chr4B 75.000 320 64 12 3264 3579 526275567 526275874 2.970000e-27 134.0
2 TraesCS4B01G227000 chr4B 92.063 63 3 2 3406 3467 15753796 15753857 2.350000e-13 87.9
3 TraesCS4B01G227000 chr4D 91.526 3965 177 69 1 3863 386998502 386994595 0.000000e+00 5313.0
4 TraesCS4B01G227000 chr4D 90.722 291 24 3 4445 4734 386994493 386994205 7.430000e-103 385.0
5 TraesCS4B01G227000 chr4D 74.688 320 65 12 3264 3579 428941065 428940758 1.380000e-25 128.0
6 TraesCS4B01G227000 chr4D 90.476 63 4 2 3406 3467 8258887 8258948 1.090000e-11 82.4
7 TraesCS4B01G227000 chr4A 91.048 3932 200 74 2 3863 68471200 68467351 0.000000e+00 5171.0
8 TraesCS4B01G227000 chr4A 86.923 260 34 0 4474 4733 68466768 68466509 4.630000e-75 292.0
9 TraesCS4B01G227000 chr4A 75.000 320 64 12 3264 3579 37318250 37318557 2.970000e-27 134.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G227000 chr4B 475191893 475196626 4733 True 8743.0 8743 100.0000 1 4734 1 chr4B.!!$R1 4733
1 TraesCS4B01G227000 chr4D 386994205 386998502 4297 True 2849.0 5313 91.1240 1 4734 2 chr4D.!!$R2 4733
2 TraesCS4B01G227000 chr4A 68466509 68471200 4691 True 2731.5 5171 88.9855 2 4733 2 chr4A.!!$R1 4731

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
937 1002 0.533755 GAGGCAGTGTGTGAGCTGTT 60.534 55.0 0.0 0.0 35.33 3.16 F
1742 1847 0.038892 ATTTGGAAGCAAGCACAGCG 60.039 50.0 0.0 0.0 37.01 5.18 F
2555 2679 0.179029 CCAACTTGACCTTCCCACGT 60.179 55.0 0.0 0.0 0.00 4.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2594 2718 0.039165 CTCTGCTTCGGCCCAAAAAC 60.039 55.0 0.00 0.00 40.91 2.43 R
3482 3610 0.036388 CACATCTGGTAGCACCCGTT 60.036 55.0 0.00 0.00 37.50 4.44 R
4095 4271 0.025898 GAATTACGTTTCGGCGAGGC 59.974 55.0 10.46 6.19 35.59 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 99 1.800315 CTTAGACGGGCGTGTCACG 60.800 63.158 21.02 21.02 45.88 4.35
110 116 1.197721 CACGTGTTGCTTTCCATCTCC 59.802 52.381 7.58 0.00 0.00 3.71
153 159 2.158058 TGGTTAGTTAATGCAACGTCGC 59.842 45.455 0.00 0.00 42.35 5.19
209 215 2.876091 TCATCACGAACGATGAACTCC 58.124 47.619 12.34 0.00 46.76 3.85
297 304 2.014554 CGACAGACGTGACAACCCG 61.015 63.158 0.00 0.00 37.22 5.28
370 377 2.968156 CCGTGAAACCCGACGCAA 60.968 61.111 0.00 0.00 34.18 4.85
371 378 2.247267 CGTGAAACCCGACGCAAC 59.753 61.111 0.00 0.00 0.00 4.17
372 379 2.247267 GTGAAACCCGACGCAACG 59.753 61.111 0.00 0.00 0.00 4.10
403 410 3.753294 ACGACATGAGAAAGTTCCAGT 57.247 42.857 0.00 0.00 0.00 4.00
477 493 4.876652 GGTACGAGACACCGGAAC 57.123 61.111 9.46 0.00 0.00 3.62
502 518 2.431683 GGGTTGCTCACAGGCAGA 59.568 61.111 0.00 0.00 43.39 4.26
503 519 1.968540 GGGTTGCTCACAGGCAGAC 60.969 63.158 0.00 0.00 43.39 3.51
602 635 2.263741 GCACCACAAGGGCACTCAG 61.264 63.158 0.00 0.00 42.05 3.35
603 636 1.451504 CACCACAAGGGCACTCAGA 59.548 57.895 0.00 0.00 42.05 3.27
922 987 1.953642 GCTAGCTAGCTTGCGAGGC 60.954 63.158 33.71 20.36 45.62 4.70
923 988 1.439228 CTAGCTAGCTTGCGAGGCA 59.561 57.895 24.88 0.24 38.13 4.75
924 989 0.597118 CTAGCTAGCTTGCGAGGCAG 60.597 60.000 24.88 7.57 40.61 4.85
925 990 1.323271 TAGCTAGCTTGCGAGGCAGT 61.323 55.000 24.88 0.00 40.61 4.40
926 991 2.459442 GCTAGCTTGCGAGGCAGTG 61.459 63.158 7.70 0.00 40.61 3.66
927 992 1.079543 CTAGCTTGCGAGGCAGTGT 60.080 57.895 2.37 0.00 40.61 3.55
928 993 1.357258 CTAGCTTGCGAGGCAGTGTG 61.357 60.000 2.37 0.00 40.61 3.82
929 994 2.099652 TAGCTTGCGAGGCAGTGTGT 62.100 55.000 2.37 0.00 40.61 3.72
930 995 2.941333 CTTGCGAGGCAGTGTGTG 59.059 61.111 0.00 0.00 40.61 3.82
935 1000 2.025969 CGAGGCAGTGTGTGAGCTG 61.026 63.158 0.00 0.00 35.93 4.24
937 1002 0.533755 GAGGCAGTGTGTGAGCTGTT 60.534 55.000 0.00 0.00 35.33 3.16
938 1003 0.758734 AGGCAGTGTGTGAGCTGTTA 59.241 50.000 0.00 0.00 35.33 2.41
947 1012 2.096713 GTGTGAGCTGTTAGTTTGAGCG 60.097 50.000 0.00 0.00 37.81 5.03
949 1014 1.079503 GAGCTGTTAGTTTGAGCGGG 58.920 55.000 0.00 0.00 37.81 6.13
950 1015 0.685097 AGCTGTTAGTTTGAGCGGGA 59.315 50.000 0.00 0.00 37.81 5.14
960 1025 3.394836 GAGCGGGAGAAGCTGGGT 61.395 66.667 0.00 0.00 46.13 4.51
962 1027 4.785453 GCGGGAGAAGCTGGGTGG 62.785 72.222 0.00 0.00 0.00 4.61
963 1028 3.003173 CGGGAGAAGCTGGGTGGA 61.003 66.667 0.00 0.00 0.00 4.02
965 1030 2.266055 GGAGAAGCTGGGTGGACG 59.734 66.667 0.00 0.00 0.00 4.79
966 1031 2.266055 GAGAAGCTGGGTGGACGG 59.734 66.667 0.00 0.00 0.00 4.79
988 1053 2.105128 CACGGCGCTAGCTAGCTT 59.895 61.111 36.02 19.01 46.85 3.74
1020 1085 1.142097 GAGGAGCCGTGGTAGCTTC 59.858 63.158 0.00 0.00 41.75 3.86
1026 1091 1.517257 CCGTGGTAGCTTCGCTCTG 60.517 63.158 0.00 0.00 40.44 3.35
1027 1092 1.506718 CGTGGTAGCTTCGCTCTGA 59.493 57.895 0.00 0.00 40.44 3.27
1028 1093 0.109272 CGTGGTAGCTTCGCTCTGAA 60.109 55.000 0.00 0.00 40.44 3.02
1072 1137 3.451004 GGATGGTGCATTGCGGCA 61.451 61.111 0.00 0.00 42.53 5.69
1074 1139 2.677524 ATGGTGCATTGCGGCAGT 60.678 55.556 1.67 0.00 45.96 4.40
1076 1141 3.364441 GGTGCATTGCGGCAGTGA 61.364 61.111 26.87 10.82 45.96 3.41
1080 1145 2.789917 CATTGCGGCAGTGAGCTC 59.210 61.111 19.39 6.82 44.79 4.09
1083 1148 3.807631 TTGCGGCAGTGAGCTCGTT 62.808 57.895 9.64 0.00 44.79 3.85
1109 1174 0.951040 GTGCCTCCTGGTCAGTTTCG 60.951 60.000 0.00 0.00 35.27 3.46
1114 1179 2.408050 CTCCTGGTCAGTTTCGTTCTG 58.592 52.381 0.00 0.00 0.00 3.02
1117 1182 2.224066 CCTGGTCAGTTTCGTTCTGTCT 60.224 50.000 0.00 0.00 34.86 3.41
1118 1183 3.053455 CTGGTCAGTTTCGTTCTGTCTC 58.947 50.000 0.00 0.00 34.86 3.36
1119 1184 2.693591 TGGTCAGTTTCGTTCTGTCTCT 59.306 45.455 0.00 0.00 34.86 3.10
1120 1185 3.243434 TGGTCAGTTTCGTTCTGTCTCTC 60.243 47.826 0.00 0.00 34.86 3.20
1121 1186 3.004944 GGTCAGTTTCGTTCTGTCTCTCT 59.995 47.826 0.00 0.00 34.86 3.10
1122 1187 4.500035 GGTCAGTTTCGTTCTGTCTCTCTT 60.500 45.833 0.00 0.00 34.86 2.85
1123 1188 5.278364 GGTCAGTTTCGTTCTGTCTCTCTTA 60.278 44.000 0.00 0.00 34.86 2.10
1124 1189 5.626132 GTCAGTTTCGTTCTGTCTCTCTTAC 59.374 44.000 0.00 0.00 34.86 2.34
1125 1190 5.531659 TCAGTTTCGTTCTGTCTCTCTTACT 59.468 40.000 0.00 0.00 34.86 2.24
1126 1191 6.039493 TCAGTTTCGTTCTGTCTCTCTTACTT 59.961 38.462 0.00 0.00 34.86 2.24
1127 1192 6.143118 CAGTTTCGTTCTGTCTCTCTTACTTG 59.857 42.308 0.00 0.00 0.00 3.16
1130 1195 4.083217 TCGTTCTGTCTCTCTTACTTGCTC 60.083 45.833 0.00 0.00 0.00 4.26
1131 1196 4.162812 GTTCTGTCTCTCTTACTTGCTCG 58.837 47.826 0.00 0.00 0.00 5.03
1142 1207 2.622064 ACTTGCTCGTGTTCCTCTTT 57.378 45.000 0.00 0.00 0.00 2.52
1146 1211 0.793250 GCTCGTGTTCCTCTTTCAGC 59.207 55.000 0.00 0.00 0.00 4.26
1151 1216 2.694213 GTGTTCCTCTTTCAGCCTCTC 58.306 52.381 0.00 0.00 0.00 3.20
1263 1344 1.646189 GATCCTCTGTTCTGCGTTCC 58.354 55.000 0.00 0.00 0.00 3.62
1280 1361 4.210746 GCGTTCCTTTCTCGAAGTAGTTTT 59.789 41.667 0.00 0.00 33.29 2.43
1308 1389 0.040067 GCTGCGAGTTTCTTTGGTGG 60.040 55.000 0.00 0.00 0.00 4.61
1315 1396 3.493699 CGAGTTTCTTTGGTGGGAGTGTA 60.494 47.826 0.00 0.00 0.00 2.90
1394 1475 4.555610 CTCTTGGGGAGCTCATGC 57.444 61.111 17.19 0.00 35.08 4.06
1404 1485 0.183492 GAGCTCATGCCATGGGGTTA 59.817 55.000 11.12 0.00 42.46 2.85
1405 1486 0.184451 AGCTCATGCCATGGGGTTAG 59.816 55.000 15.13 0.00 38.57 2.34
1406 1487 0.183492 GCTCATGCCATGGGGTTAGA 59.817 55.000 15.13 0.00 36.17 2.10
1407 1488 1.816961 GCTCATGCCATGGGGTTAGAG 60.817 57.143 15.13 0.00 36.17 2.43
1408 1489 0.183492 TCATGCCATGGGGTTAGAGC 59.817 55.000 15.13 0.00 36.17 4.09
1409 1490 0.184451 CATGCCATGGGGTTAGAGCT 59.816 55.000 15.13 0.00 36.17 4.09
1410 1491 1.421268 CATGCCATGGGGTTAGAGCTA 59.579 52.381 15.13 0.00 36.17 3.32
1412 1493 1.211949 TGCCATGGGGTTAGAGCTAAC 59.788 52.381 15.13 11.07 43.40 2.34
1413 1494 1.490910 GCCATGGGGTTAGAGCTAACT 59.509 52.381 15.13 0.00 43.58 2.24
1423 1506 5.535783 GGGTTAGAGCTAACTACTAGGAAGG 59.464 48.000 17.16 0.00 43.58 3.46
1429 1512 5.778542 AGCTAACTACTAGGAAGGGAATGA 58.221 41.667 0.00 0.00 0.00 2.57
1433 1516 2.198334 ACTAGGAAGGGAATGAGGGG 57.802 55.000 0.00 0.00 0.00 4.79
1436 1519 2.375345 GGAAGGGAATGAGGGGCGA 61.375 63.158 0.00 0.00 0.00 5.54
1437 1520 1.607612 GAAGGGAATGAGGGGCGAA 59.392 57.895 0.00 0.00 0.00 4.70
1439 1522 0.631212 AAGGGAATGAGGGGCGAAAT 59.369 50.000 0.00 0.00 0.00 2.17
1440 1523 0.106519 AGGGAATGAGGGGCGAAATG 60.107 55.000 0.00 0.00 0.00 2.32
1696 1801 4.504461 GGCTACAAGTATCATGACGAGTTG 59.496 45.833 18.90 18.90 0.00 3.16
1742 1847 0.038892 ATTTGGAAGCAAGCACAGCG 60.039 50.000 0.00 0.00 37.01 5.18
1864 1975 2.126307 CTGTCGCTGTCCTGTCCG 60.126 66.667 0.00 0.00 0.00 4.79
1872 1983 2.493713 CTGTCCTGTCCGTATACAGC 57.506 55.000 3.32 0.00 44.56 4.40
1955 2066 3.746751 GCATAGTTCACTCCCATGCATCT 60.747 47.826 0.00 0.00 41.25 2.90
1987 2098 7.201732 GGAATAGTGGTGATTAAATCTGTGTGG 60.202 40.741 0.00 0.00 0.00 4.17
2096 2207 1.163554 GGTACAAGACGACGGAGACT 58.836 55.000 0.00 0.00 0.00 3.24
2177 2288 2.156098 AGGCTGGGTGAAGCTGGAA 61.156 57.895 0.00 0.00 43.06 3.53
2340 2451 1.003580 TCATCTTCTTCCAGGTGCACC 59.996 52.381 29.22 29.22 0.00 5.01
2351 2462 1.043816 AGGTGCACCTGATATCCGAG 58.956 55.000 37.39 0.00 46.55 4.63
2352 2463 1.040646 GGTGCACCTGATATCCGAGA 58.959 55.000 29.12 0.00 0.00 4.04
2353 2464 1.412710 GGTGCACCTGATATCCGAGAA 59.587 52.381 29.12 0.00 0.00 2.87
2355 2466 2.101582 GTGCACCTGATATCCGAGAACT 59.898 50.000 5.22 0.00 0.00 3.01
2356 2467 2.766263 TGCACCTGATATCCGAGAACTT 59.234 45.455 0.00 0.00 0.00 2.66
2357 2468 3.197766 TGCACCTGATATCCGAGAACTTT 59.802 43.478 0.00 0.00 0.00 2.66
2359 2470 4.745620 GCACCTGATATCCGAGAACTTTAC 59.254 45.833 0.00 0.00 0.00 2.01
2360 2471 4.976731 CACCTGATATCCGAGAACTTTACG 59.023 45.833 0.00 0.00 0.00 3.18
2361 2472 3.982058 CCTGATATCCGAGAACTTTACGC 59.018 47.826 0.00 0.00 0.00 4.42
2363 2474 4.607955 TGATATCCGAGAACTTTACGCTG 58.392 43.478 0.00 0.00 0.00 5.18
2364 2475 4.337274 TGATATCCGAGAACTTTACGCTGA 59.663 41.667 0.00 0.00 0.00 4.26
2365 2476 3.587797 ATCCGAGAACTTTACGCTGAA 57.412 42.857 0.00 0.00 0.00 3.02
2376 2487 4.081030 CGCTGAACGTGCTGCCTG 62.081 66.667 18.72 3.05 36.87 4.85
2378 2489 2.037136 GCTGAACGTGCTGCCTGAT 61.037 57.895 14.21 0.00 0.00 2.90
2379 2490 1.580845 GCTGAACGTGCTGCCTGATT 61.581 55.000 14.21 0.00 0.00 2.57
2381 2492 0.874390 TGAACGTGCTGCCTGATTTC 59.126 50.000 0.00 0.00 0.00 2.17
2384 2495 2.472695 ACGTGCTGCCTGATTTCTTA 57.527 45.000 0.00 0.00 0.00 2.10
2385 2496 2.076863 ACGTGCTGCCTGATTTCTTAC 58.923 47.619 0.00 0.00 0.00 2.34
2387 2498 1.745653 GTGCTGCCTGATTTCTTACCC 59.254 52.381 0.00 0.00 0.00 3.69
2388 2499 1.340991 TGCTGCCTGATTTCTTACCCC 60.341 52.381 0.00 0.00 0.00 4.95
2389 2500 2.024306 GCTGCCTGATTTCTTACCCCC 61.024 57.143 0.00 0.00 0.00 5.40
2390 2501 1.566231 CTGCCTGATTTCTTACCCCCT 59.434 52.381 0.00 0.00 0.00 4.79
2391 2502 1.564348 TGCCTGATTTCTTACCCCCTC 59.436 52.381 0.00 0.00 0.00 4.30
2530 2654 4.260497 GGAAGGTACAGTTTTGTCGTTGTC 60.260 45.833 0.00 0.00 38.76 3.18
2531 2655 3.864243 AGGTACAGTTTTGTCGTTGTCA 58.136 40.909 0.00 0.00 38.76 3.58
2532 2656 3.619929 AGGTACAGTTTTGTCGTTGTCAC 59.380 43.478 0.00 0.00 38.76 3.67
2552 2676 0.467290 GTGCCAACTTGACCTTCCCA 60.467 55.000 0.00 0.00 0.00 4.37
2553 2677 0.467290 TGCCAACTTGACCTTCCCAC 60.467 55.000 0.00 0.00 0.00 4.61
2555 2679 0.179029 CCAACTTGACCTTCCCACGT 60.179 55.000 0.00 0.00 0.00 4.49
2558 2682 2.005370 ACTTGACCTTCCCACGTAGA 57.995 50.000 0.00 0.00 0.00 2.59
2559 2683 1.893801 ACTTGACCTTCCCACGTAGAG 59.106 52.381 0.00 0.00 0.00 2.43
2561 2685 2.885135 TGACCTTCCCACGTAGAGTA 57.115 50.000 0.00 0.00 0.00 2.59
2562 2686 2.719739 TGACCTTCCCACGTAGAGTAG 58.280 52.381 0.00 0.00 0.00 2.57
2563 2687 1.404748 GACCTTCCCACGTAGAGTAGC 59.595 57.143 0.00 0.00 0.00 3.58
2564 2688 1.272313 ACCTTCCCACGTAGAGTAGCA 60.272 52.381 0.00 0.00 0.00 3.49
2565 2689 1.405821 CCTTCCCACGTAGAGTAGCAG 59.594 57.143 0.00 0.00 0.00 4.24
2566 2690 2.093106 CTTCCCACGTAGAGTAGCAGT 58.907 52.381 0.00 0.00 0.00 4.40
2567 2691 2.211250 TCCCACGTAGAGTAGCAGTT 57.789 50.000 0.00 0.00 0.00 3.16
2568 2692 1.816835 TCCCACGTAGAGTAGCAGTTG 59.183 52.381 0.00 0.00 0.00 3.16
2569 2693 1.816835 CCCACGTAGAGTAGCAGTTGA 59.183 52.381 0.00 0.00 0.00 3.18
2570 2694 2.159366 CCCACGTAGAGTAGCAGTTGAG 60.159 54.545 0.00 0.00 0.00 3.02
2571 2695 2.488545 CCACGTAGAGTAGCAGTTGAGT 59.511 50.000 0.00 0.00 0.00 3.41
2572 2696 3.493272 CACGTAGAGTAGCAGTTGAGTG 58.507 50.000 0.00 0.00 0.00 3.51
2573 2697 3.188667 CACGTAGAGTAGCAGTTGAGTGA 59.811 47.826 0.00 0.00 0.00 3.41
2574 2698 3.437395 ACGTAGAGTAGCAGTTGAGTGAG 59.563 47.826 0.00 0.00 0.00 3.51
2575 2699 3.729462 CGTAGAGTAGCAGTTGAGTGAGC 60.729 52.174 0.00 0.00 0.00 4.26
2579 2703 1.862602 TAGCAGTTGAGTGAGCGCGA 61.863 55.000 12.10 0.00 0.00 5.87
2585 2709 1.584308 GTTGAGTGAGCGCGAGTAATC 59.416 52.381 12.10 3.64 0.00 1.75
2590 2714 1.783711 GTGAGCGCGAGTAATCTGATG 59.216 52.381 12.10 0.00 0.00 3.07
2591 2715 0.781191 GAGCGCGAGTAATCTGATGC 59.219 55.000 12.10 0.00 0.00 3.91
2594 2718 0.500178 CGCGAGTAATCTGATGCGTG 59.500 55.000 0.00 6.45 40.61 5.34
2599 2723 4.669197 GCGAGTAATCTGATGCGTGTTTTT 60.669 41.667 0.00 0.00 0.00 1.94
2601 2725 5.046910 AGTAATCTGATGCGTGTTTTTGG 57.953 39.130 0.00 0.00 0.00 3.28
2602 2726 3.302365 AATCTGATGCGTGTTTTTGGG 57.698 42.857 0.00 0.00 0.00 4.12
2604 2728 0.667184 CTGATGCGTGTTTTTGGGCC 60.667 55.000 0.00 0.00 0.00 5.80
2605 2729 1.732683 GATGCGTGTTTTTGGGCCG 60.733 57.895 0.00 0.00 0.00 6.13
2633 2761 2.190578 GGAAGAGGATGGCCACCG 59.809 66.667 8.16 0.00 36.29 4.94
2713 2841 1.602771 GGCTAAGGACTTCCCGCTT 59.397 57.895 0.00 0.00 40.87 4.68
3192 3320 3.735029 GGAGACCTGCGACGACGT 61.735 66.667 9.33 0.00 41.98 4.34
3193 3321 2.502080 GAGACCTGCGACGACGTG 60.502 66.667 4.58 0.00 41.98 4.49
3199 3327 4.379143 TGCGACGACGTGTCCTCG 62.379 66.667 4.58 14.35 45.23 4.63
3205 3333 2.175322 GACGTGTCCTCGACCGTC 59.825 66.667 15.11 15.11 43.09 4.79
3667 3795 4.659874 GTGAACGCCGGCAACACG 62.660 66.667 28.98 12.44 41.24 4.49
3741 3869 3.260884 ACCGTTCAGATATGACACTGGTT 59.739 43.478 0.00 0.00 35.20 3.67
3812 3941 1.804748 GTTGTTTCGGGCTTCTACCTG 59.195 52.381 0.00 0.00 37.44 4.00
3815 3944 1.537814 TTTCGGGCTTCTACCTGCGA 61.538 55.000 0.00 0.00 35.90 5.10
3853 3984 4.453478 GCTTGTGGGTAGTGGTTACTAAAC 59.547 45.833 0.00 0.00 40.89 2.01
3873 4049 8.566260 ACTAAACTATATACTCGAGCAAACGAT 58.434 33.333 13.61 0.35 41.39 3.73
3914 4090 8.537049 ACAAAACAAATGATTATGACATGGTG 57.463 30.769 0.00 0.00 0.00 4.17
3916 4092 8.649841 CAAAACAAATGATTATGACATGGTGAC 58.350 33.333 0.00 0.00 0.00 3.67
3928 4104 4.057428 GGTGACAGCTCGCCTCGT 62.057 66.667 0.00 0.00 43.05 4.18
3929 4105 2.505118 GTGACAGCTCGCCTCGTC 60.505 66.667 0.00 0.00 0.00 4.20
3930 4106 2.673341 TGACAGCTCGCCTCGTCT 60.673 61.111 1.86 0.00 0.00 4.18
3931 4107 1.376812 TGACAGCTCGCCTCGTCTA 60.377 57.895 1.86 0.00 0.00 2.59
3932 4108 1.353804 GACAGCTCGCCTCGTCTAG 59.646 63.158 0.00 0.00 0.00 2.43
3933 4109 1.370587 GACAGCTCGCCTCGTCTAGT 61.371 60.000 0.00 0.00 0.00 2.57
3934 4110 0.107800 ACAGCTCGCCTCGTCTAGTA 60.108 55.000 0.00 0.00 0.00 1.82
3935 4111 0.305313 CAGCTCGCCTCGTCTAGTAC 59.695 60.000 0.00 0.00 0.00 2.73
3936 4112 0.107800 AGCTCGCCTCGTCTAGTACA 60.108 55.000 0.00 0.00 0.00 2.90
3938 4114 0.301088 CTCGCCTCGTCTAGTACACG 59.699 60.000 0.00 0.00 38.67 4.49
3939 4115 1.086067 TCGCCTCGTCTAGTACACGG 61.086 60.000 4.61 0.00 37.85 4.94
3941 4117 1.375098 GCCTCGTCTAGTACACGGCT 61.375 60.000 4.61 0.00 39.05 5.52
3942 4118 1.945387 CCTCGTCTAGTACACGGCTA 58.055 55.000 4.61 0.00 37.85 3.93
3943 4119 1.865970 CCTCGTCTAGTACACGGCTAG 59.134 57.143 4.61 0.00 37.85 3.42
3944 4120 2.548875 CTCGTCTAGTACACGGCTAGT 58.451 52.381 4.61 0.00 37.69 2.57
4022 4198 6.283694 TGTATGGTCATCATAAGAGACAAGC 58.716 40.000 0.00 0.00 39.78 4.01
4024 4200 5.363562 TGGTCATCATAAGAGACAAGCAT 57.636 39.130 0.00 0.00 34.04 3.79
4025 4201 5.121105 TGGTCATCATAAGAGACAAGCATG 58.879 41.667 0.00 0.00 34.04 4.06
4026 4202 4.024218 GGTCATCATAAGAGACAAGCATGC 60.024 45.833 10.51 10.51 34.04 4.06
4027 4203 4.815308 GTCATCATAAGAGACAAGCATGCT 59.185 41.667 16.30 16.30 32.68 3.79
4028 4204 5.296283 GTCATCATAAGAGACAAGCATGCTT 59.704 40.000 27.21 27.21 36.60 3.91
4037 4213 2.512485 CAAGCATGCTTGTCAACCAA 57.488 45.000 40.10 0.00 45.91 3.67
4038 4214 2.129607 CAAGCATGCTTGTCAACCAAC 58.870 47.619 40.10 1.25 45.91 3.77
4040 4216 2.034124 AGCATGCTTGTCAACCAACTT 58.966 42.857 16.30 0.00 0.00 2.66
4041 4217 2.431782 AGCATGCTTGTCAACCAACTTT 59.568 40.909 16.30 0.00 0.00 2.66
4043 4219 2.292103 TGCTTGTCAACCAACTTTGC 57.708 45.000 0.00 0.00 0.00 3.68
4044 4220 1.547820 TGCTTGTCAACCAACTTTGCA 59.452 42.857 0.00 0.00 0.00 4.08
4045 4221 2.168106 TGCTTGTCAACCAACTTTGCAT 59.832 40.909 0.00 0.00 0.00 3.96
4046 4222 3.382865 TGCTTGTCAACCAACTTTGCATA 59.617 39.130 0.00 0.00 0.00 3.14
4047 4223 4.142071 TGCTTGTCAACCAACTTTGCATAA 60.142 37.500 0.00 0.00 0.00 1.90
4048 4224 4.808364 GCTTGTCAACCAACTTTGCATAAA 59.192 37.500 0.00 0.00 0.00 1.40
4050 4226 5.843673 TGTCAACCAACTTTGCATAAAGA 57.156 34.783 5.15 0.00 44.87 2.52
4051 4227 6.214191 TGTCAACCAACTTTGCATAAAGAA 57.786 33.333 5.15 0.00 44.87 2.52
4052 4228 6.815089 TGTCAACCAACTTTGCATAAAGAAT 58.185 32.000 5.15 0.00 44.87 2.40
4053 4229 7.271511 TGTCAACCAACTTTGCATAAAGAATT 58.728 30.769 5.15 0.00 44.87 2.17
4054 4230 7.437862 TGTCAACCAACTTTGCATAAAGAATTC 59.562 33.333 5.15 0.00 44.87 2.17
4055 4231 6.928492 TCAACCAACTTTGCATAAAGAATTCC 59.072 34.615 5.15 0.00 44.87 3.01
4056 4232 6.418057 ACCAACTTTGCATAAAGAATTCCA 57.582 33.333 5.15 0.00 44.87 3.53
4057 4233 6.223120 ACCAACTTTGCATAAAGAATTCCAC 58.777 36.000 5.15 0.00 44.87 4.02
4058 4234 6.183360 ACCAACTTTGCATAAAGAATTCCACA 60.183 34.615 5.15 0.00 44.87 4.17
4059 4235 6.705381 CCAACTTTGCATAAAGAATTCCACAA 59.295 34.615 5.15 0.00 44.87 3.33
4060 4236 7.095523 CCAACTTTGCATAAAGAATTCCACAAG 60.096 37.037 5.15 0.00 44.87 3.16
4061 4237 7.288810 ACTTTGCATAAAGAATTCCACAAGA 57.711 32.000 5.15 0.00 44.87 3.02
4063 4239 7.869429 ACTTTGCATAAAGAATTCCACAAGAAG 59.131 33.333 5.15 0.96 44.87 2.85
4064 4240 6.899393 TGCATAAAGAATTCCACAAGAAGT 57.101 33.333 0.65 0.00 38.07 3.01
4065 4241 7.994425 TGCATAAAGAATTCCACAAGAAGTA 57.006 32.000 0.65 0.00 38.07 2.24
4066 4242 8.402798 TGCATAAAGAATTCCACAAGAAGTAA 57.597 30.769 0.65 0.00 38.07 2.24
4067 4243 8.855110 TGCATAAAGAATTCCACAAGAAGTAAA 58.145 29.630 0.65 0.00 38.07 2.01
4068 4244 9.691362 GCATAAAGAATTCCACAAGAAGTAAAA 57.309 29.630 0.65 0.00 38.07 1.52
4080 4256 9.716507 CCACAAGAAGTAAAATTATATTCCACG 57.283 33.333 0.00 0.00 0.00 4.94
4093 4269 9.716507 AATTATATTCCACGTTCGAGAAAATTG 57.283 29.630 0.00 0.00 0.00 2.32
4094 4270 6.737254 ATATTCCACGTTCGAGAAAATTGT 57.263 33.333 0.00 0.00 0.00 2.71
4095 4271 3.870723 TCCACGTTCGAGAAAATTGTG 57.129 42.857 0.00 0.00 0.00 3.33
4096 4272 2.032377 TCCACGTTCGAGAAAATTGTGC 60.032 45.455 0.00 0.00 0.00 4.57
4097 4273 2.307049 CACGTTCGAGAAAATTGTGCC 58.693 47.619 0.00 0.00 0.00 5.01
4098 4274 2.032030 CACGTTCGAGAAAATTGTGCCT 60.032 45.455 0.00 0.00 0.00 4.75
4099 4275 2.223377 ACGTTCGAGAAAATTGTGCCTC 59.777 45.455 0.00 0.00 0.00 4.70
4100 4276 2.721797 CGTTCGAGAAAATTGTGCCTCG 60.722 50.000 0.00 0.00 46.82 4.63
4101 4277 0.796312 TCGAGAAAATTGTGCCTCGC 59.204 50.000 0.00 0.00 45.55 5.03
4103 4279 0.179189 GAGAAAATTGTGCCTCGCCG 60.179 55.000 0.00 0.00 0.00 6.46
4104 4280 0.605319 AGAAAATTGTGCCTCGCCGA 60.605 50.000 0.00 0.00 0.00 5.54
4105 4281 0.239879 GAAAATTGTGCCTCGCCGAA 59.760 50.000 0.00 0.00 0.00 4.30
4106 4282 0.671251 AAAATTGTGCCTCGCCGAAA 59.329 45.000 0.00 0.00 0.00 3.46
4108 4284 2.182614 AATTGTGCCTCGCCGAAACG 62.183 55.000 0.00 0.00 0.00 3.60
4109 4285 4.595538 TGTGCCTCGCCGAAACGT 62.596 61.111 0.00 0.00 0.00 3.99
4110 4286 2.431260 GTGCCTCGCCGAAACGTA 60.431 61.111 0.00 0.00 0.00 3.57
4111 4287 2.023223 GTGCCTCGCCGAAACGTAA 61.023 57.895 0.00 0.00 0.00 3.18
4112 4288 1.079681 TGCCTCGCCGAAACGTAAT 60.080 52.632 0.00 0.00 0.00 1.89
4113 4289 0.671163 TGCCTCGCCGAAACGTAATT 60.671 50.000 0.00 0.00 0.00 1.40
4114 4290 0.025898 GCCTCGCCGAAACGTAATTC 59.974 55.000 0.00 0.00 0.00 2.17
4115 4291 1.352114 CCTCGCCGAAACGTAATTCA 58.648 50.000 0.00 0.00 0.00 2.57
4116 4292 1.060122 CCTCGCCGAAACGTAATTCAC 59.940 52.381 0.00 0.00 0.00 3.18
4118 4294 2.133553 TCGCCGAAACGTAATTCACAA 58.866 42.857 0.00 0.00 0.00 3.33
4119 4295 2.543012 TCGCCGAAACGTAATTCACAAA 59.457 40.909 0.00 0.00 0.00 2.83
4120 4296 2.648431 CGCCGAAACGTAATTCACAAAC 59.352 45.455 0.00 0.00 0.00 2.93
4121 4297 3.619729 GCCGAAACGTAATTCACAAACA 58.380 40.909 0.00 0.00 0.00 2.83
4123 4299 4.319901 GCCGAAACGTAATTCACAAACATC 59.680 41.667 0.00 0.00 0.00 3.06
4124 4300 4.849383 CCGAAACGTAATTCACAAACATCC 59.151 41.667 0.00 0.00 0.00 3.51
4125 4301 5.334569 CCGAAACGTAATTCACAAACATCCT 60.335 40.000 0.00 0.00 0.00 3.24
4126 4302 5.788531 CGAAACGTAATTCACAAACATCCTC 59.211 40.000 0.00 0.00 0.00 3.71
4127 4303 5.622770 AACGTAATTCACAAACATCCTCC 57.377 39.130 0.00 0.00 0.00 4.30
4129 4305 3.485216 CGTAATTCACAAACATCCTCCGC 60.485 47.826 0.00 0.00 0.00 5.54
4130 4306 1.463674 ATTCACAAACATCCTCCGCC 58.536 50.000 0.00 0.00 0.00 6.13
4131 4307 0.400213 TTCACAAACATCCTCCGCCT 59.600 50.000 0.00 0.00 0.00 5.52
4133 4309 1.207089 TCACAAACATCCTCCGCCTAG 59.793 52.381 0.00 0.00 0.00 3.02
4137 4313 0.032017 AACATCCTCCGCCTAGACCT 60.032 55.000 0.00 0.00 0.00 3.85
4138 4314 0.468400 ACATCCTCCGCCTAGACCTC 60.468 60.000 0.00 0.00 0.00 3.85
4139 4315 1.154221 ATCCTCCGCCTAGACCTCC 59.846 63.158 0.00 0.00 0.00 4.30
4140 4316 1.656092 ATCCTCCGCCTAGACCTCCA 61.656 60.000 0.00 0.00 0.00 3.86
4141 4317 2.128507 CCTCCGCCTAGACCTCCAC 61.129 68.421 0.00 0.00 0.00 4.02
4142 4318 2.043248 TCCGCCTAGACCTCCACC 60.043 66.667 0.00 0.00 0.00 4.61
4143 4319 3.528370 CCGCCTAGACCTCCACCG 61.528 72.222 0.00 0.00 0.00 4.94
4144 4320 4.208686 CGCCTAGACCTCCACCGC 62.209 72.222 0.00 0.00 0.00 5.68
4161 4337 2.813908 CAGGCCGCGGTGACTAAC 60.814 66.667 28.70 7.66 0.00 2.34
4162 4338 3.307906 AGGCCGCGGTGACTAACA 61.308 61.111 28.70 0.00 0.00 2.41
4172 4348 1.523758 GTGACTAACACCCTTGCCAG 58.476 55.000 0.00 0.00 43.05 4.85
4174 4350 1.202758 TGACTAACACCCTTGCCAGTG 60.203 52.381 0.00 0.00 39.93 3.66
4175 4351 1.071699 GACTAACACCCTTGCCAGTGA 59.928 52.381 0.00 0.00 37.43 3.41
4176 4352 1.202770 ACTAACACCCTTGCCAGTGAC 60.203 52.381 0.00 0.00 37.43 3.67
4178 4354 1.136828 AACACCCTTGCCAGTGACTA 58.863 50.000 0.00 0.00 37.43 2.59
4179 4355 0.396811 ACACCCTTGCCAGTGACTAC 59.603 55.000 0.00 0.00 37.43 2.73
4180 4356 0.687354 CACCCTTGCCAGTGACTACT 59.313 55.000 0.00 0.00 36.01 2.57
4182 4358 0.250513 CCCTTGCCAGTGACTACTCC 59.749 60.000 0.00 0.00 34.07 3.85
4183 4359 0.108615 CCTTGCCAGTGACTACTCCG 60.109 60.000 0.00 0.00 34.07 4.63
4184 4360 0.108615 CTTGCCAGTGACTACTCCGG 60.109 60.000 0.00 0.00 34.07 5.14
4185 4361 0.830444 TTGCCAGTGACTACTCCGGT 60.830 55.000 0.00 0.00 34.07 5.28
4186 4362 0.830444 TGCCAGTGACTACTCCGGTT 60.830 55.000 0.00 0.00 34.07 4.44
4187 4363 0.108756 GCCAGTGACTACTCCGGTTC 60.109 60.000 0.00 0.00 34.07 3.62
4188 4364 0.531200 CCAGTGACTACTCCGGTTCC 59.469 60.000 0.00 0.00 34.07 3.62
4189 4365 0.170561 CAGTGACTACTCCGGTTCCG 59.829 60.000 0.00 4.08 34.07 4.30
4200 4376 4.754667 GGTTCCGGCTCCCACGTC 62.755 72.222 0.00 0.00 0.00 4.34
4201 4377 4.754667 GTTCCGGCTCCCACGTCC 62.755 72.222 0.00 0.00 0.00 4.79
4214 4390 3.275088 CGTCCTCGTGCCAGTAGT 58.725 61.111 0.00 0.00 0.00 2.73
4216 4392 1.306642 CGTCCTCGTGCCAGTAGTCT 61.307 60.000 0.00 0.00 0.00 3.24
4217 4393 0.452585 GTCCTCGTGCCAGTAGTCTC 59.547 60.000 0.00 0.00 0.00 3.36
4219 4395 1.178276 CCTCGTGCCAGTAGTCTCTT 58.822 55.000 0.00 0.00 0.00 2.85
4220 4396 1.133407 CCTCGTGCCAGTAGTCTCTTC 59.867 57.143 0.00 0.00 0.00 2.87
4222 4398 2.085320 TCGTGCCAGTAGTCTCTTCTC 58.915 52.381 0.00 0.00 0.00 2.87
4223 4399 1.813178 CGTGCCAGTAGTCTCTTCTCA 59.187 52.381 0.00 0.00 0.00 3.27
4224 4400 2.414824 CGTGCCAGTAGTCTCTTCTCAC 60.415 54.545 0.00 0.00 0.00 3.51
4225 4401 2.558795 GTGCCAGTAGTCTCTTCTCACA 59.441 50.000 0.00 0.00 0.00 3.58
4228 4404 5.016831 TGCCAGTAGTCTCTTCTCACAATA 58.983 41.667 0.00 0.00 0.00 1.90
4230 4406 5.982516 GCCAGTAGTCTCTTCTCACAATATG 59.017 44.000 0.00 0.00 0.00 1.78
4232 4408 6.097554 CCAGTAGTCTCTTCTCACAATATGGT 59.902 42.308 0.00 0.00 0.00 3.55
4233 4409 6.977502 CAGTAGTCTCTTCTCACAATATGGTG 59.022 42.308 3.59 3.59 40.16 4.17
4234 4410 4.764172 AGTCTCTTCTCACAATATGGTGC 58.236 43.478 5.25 0.00 38.66 5.01
4237 4413 4.713814 TCTCTTCTCACAATATGGTGCTCT 59.286 41.667 5.25 0.00 38.66 4.09
4238 4414 5.016051 TCTTCTCACAATATGGTGCTCTC 57.984 43.478 5.25 0.00 38.66 3.20
4239 4415 3.827008 TCTCACAATATGGTGCTCTCC 57.173 47.619 5.25 0.00 38.66 3.71
4240 4416 2.101415 TCTCACAATATGGTGCTCTCCG 59.899 50.000 5.25 0.00 38.66 4.63
4241 4417 2.101415 CTCACAATATGGTGCTCTCCGA 59.899 50.000 5.25 0.00 38.66 4.55
4242 4418 2.700371 TCACAATATGGTGCTCTCCGAT 59.300 45.455 5.25 0.00 38.66 4.18
4244 4420 2.288457 ACAATATGGTGCTCTCCGATCG 60.288 50.000 8.51 8.51 0.00 3.69
4245 4421 1.621992 ATATGGTGCTCTCCGATCGT 58.378 50.000 15.09 0.00 0.00 3.73
4246 4422 1.399714 TATGGTGCTCTCCGATCGTT 58.600 50.000 15.09 0.00 0.00 3.85
4247 4423 0.179100 ATGGTGCTCTCCGATCGTTG 60.179 55.000 15.09 6.31 0.00 4.10
4250 4426 0.389948 GTGCTCTCCGATCGTTGGTT 60.390 55.000 15.09 0.00 0.00 3.67
4251 4427 0.320374 TGCTCTCCGATCGTTGGTTT 59.680 50.000 15.09 0.00 0.00 3.27
4252 4428 0.721718 GCTCTCCGATCGTTGGTTTG 59.278 55.000 15.09 0.00 0.00 2.93
4254 4430 2.683968 CTCTCCGATCGTTGGTTTGAA 58.316 47.619 15.09 0.00 0.00 2.69
4274 4450 1.869774 CCAAGTTTGGCTTTTGAGGC 58.130 50.000 0.00 0.00 42.21 4.70
4283 4459 2.427506 GGCTTTTGAGGCCTATATCGG 58.572 52.381 4.42 0.00 45.57 4.18
4285 4461 3.007614 GGCTTTTGAGGCCTATATCGGTA 59.992 47.826 4.42 0.00 45.57 4.02
4286 4462 4.246458 GCTTTTGAGGCCTATATCGGTAG 58.754 47.826 4.42 0.00 0.00 3.18
4287 4463 4.822026 CTTTTGAGGCCTATATCGGTAGG 58.178 47.826 4.42 5.43 43.42 3.18
4288 4464 3.537795 TTGAGGCCTATATCGGTAGGT 57.462 47.619 4.42 0.00 42.68 3.08
4289 4465 4.662966 TTGAGGCCTATATCGGTAGGTA 57.337 45.455 4.42 0.00 42.68 3.08
4290 4466 4.662966 TGAGGCCTATATCGGTAGGTAA 57.337 45.455 4.42 0.00 42.68 2.85
4291 4467 5.202746 TGAGGCCTATATCGGTAGGTAAT 57.797 43.478 4.42 0.00 42.68 1.89
4292 4468 6.331577 TGAGGCCTATATCGGTAGGTAATA 57.668 41.667 4.42 0.00 42.68 0.98
4293 4469 6.125029 TGAGGCCTATATCGGTAGGTAATAC 58.875 44.000 4.42 0.00 42.68 1.89
4295 4471 7.127801 TGAGGCCTATATCGGTAGGTAATACTA 59.872 40.741 4.42 0.00 42.68 1.82
4298 4474 8.162746 GGCCTATATCGGTAGGTAATACTAGAT 58.837 40.741 0.00 0.00 42.68 1.98
4299 4475 9.218440 GCCTATATCGGTAGGTAATACTAGATC 57.782 40.741 0.00 0.00 42.68 2.75
4300 4476 9.723601 CCTATATCGGTAGGTAATACTAGATCC 57.276 40.741 0.00 0.00 37.13 3.36
4301 4477 9.723601 CTATATCGGTAGGTAATACTAGATCCC 57.276 40.741 0.00 0.00 35.20 3.85
4305 4481 5.517924 GGTAGGTAATACTAGATCCCCCTC 58.482 50.000 0.00 0.00 34.56 4.30
4306 4482 5.016031 GGTAGGTAATACTAGATCCCCCTCA 59.984 48.000 0.00 0.00 34.56 3.86
4307 4483 5.698369 AGGTAATACTAGATCCCCCTCAA 57.302 43.478 0.00 0.00 0.00 3.02
4308 4484 6.248080 AGGTAATACTAGATCCCCCTCAAT 57.752 41.667 0.00 0.00 0.00 2.57
4309 4485 6.644882 AGGTAATACTAGATCCCCCTCAATT 58.355 40.000 0.00 0.00 0.00 2.32
4310 4486 7.786968 AGGTAATACTAGATCCCCCTCAATTA 58.213 38.462 0.00 0.00 0.00 1.40
4314 4490 7.757242 ATACTAGATCCCCCTCAATTATTCC 57.243 40.000 0.00 0.00 0.00 3.01
4315 4491 4.532521 ACTAGATCCCCCTCAATTATTCCG 59.467 45.833 0.00 0.00 0.00 4.30
4316 4492 3.598264 AGATCCCCCTCAATTATTCCGA 58.402 45.455 0.00 0.00 0.00 4.55
4317 4493 4.179133 AGATCCCCCTCAATTATTCCGAT 58.821 43.478 0.00 0.00 0.00 4.18
4318 4494 5.350547 AGATCCCCCTCAATTATTCCGATA 58.649 41.667 0.00 0.00 0.00 2.92
4319 4495 5.426833 AGATCCCCCTCAATTATTCCGATAG 59.573 44.000 0.00 0.00 0.00 2.08
4331 4507 4.711980 CGATAGGCACGTCAGGAC 57.288 61.111 0.00 0.00 0.00 3.85
4343 4519 2.457366 GTCAGGACGTTCTTCATGGT 57.543 50.000 0.00 0.00 0.00 3.55
4344 4520 2.338500 GTCAGGACGTTCTTCATGGTC 58.662 52.381 0.00 0.00 0.00 4.02
4348 4524 1.275291 GGACGTTCTTCATGGTCCTCA 59.725 52.381 8.76 0.00 44.35 3.86
4349 4525 2.289444 GGACGTTCTTCATGGTCCTCAA 60.289 50.000 8.76 0.00 44.35 3.02
4350 4526 3.399330 GACGTTCTTCATGGTCCTCAAA 58.601 45.455 0.00 0.00 0.00 2.69
4351 4527 4.003648 GACGTTCTTCATGGTCCTCAAAT 58.996 43.478 0.00 0.00 0.00 2.32
4353 4529 4.455877 ACGTTCTTCATGGTCCTCAAATTC 59.544 41.667 0.00 0.00 0.00 2.17
4354 4530 4.697352 CGTTCTTCATGGTCCTCAAATTCT 59.303 41.667 0.00 0.00 0.00 2.40
4355 4531 5.163814 CGTTCTTCATGGTCCTCAAATTCTC 60.164 44.000 0.00 0.00 0.00 2.87
4357 4533 6.874278 TCTTCATGGTCCTCAAATTCTCTA 57.126 37.500 0.00 0.00 0.00 2.43
4358 4534 7.257790 TCTTCATGGTCCTCAAATTCTCTAA 57.742 36.000 0.00 0.00 0.00 2.10
4359 4535 7.334090 TCTTCATGGTCCTCAAATTCTCTAAG 58.666 38.462 0.00 0.00 0.00 2.18
4361 4537 6.644347 TCATGGTCCTCAAATTCTCTAAGTC 58.356 40.000 0.00 0.00 0.00 3.01
4362 4538 5.422214 TGGTCCTCAAATTCTCTAAGTCC 57.578 43.478 0.00 0.00 0.00 3.85
4363 4539 4.844085 TGGTCCTCAAATTCTCTAAGTCCA 59.156 41.667 0.00 0.00 0.00 4.02
4364 4540 5.309543 TGGTCCTCAAATTCTCTAAGTCCAA 59.690 40.000 0.00 0.00 0.00 3.53
4365 4541 5.877564 GGTCCTCAAATTCTCTAAGTCCAAG 59.122 44.000 0.00 0.00 0.00 3.61
4366 4542 6.295916 GGTCCTCAAATTCTCTAAGTCCAAGA 60.296 42.308 0.00 0.00 0.00 3.02
4368 4544 7.494298 GTCCTCAAATTCTCTAAGTCCAAGATC 59.506 40.741 0.00 0.00 0.00 2.75
4369 4545 7.180946 TCCTCAAATTCTCTAAGTCCAAGATCA 59.819 37.037 0.00 0.00 0.00 2.92
4371 4547 7.106239 TCAAATTCTCTAAGTCCAAGATCACC 58.894 38.462 0.00 0.00 0.00 4.02
4372 4548 6.627087 AATTCTCTAAGTCCAAGATCACCA 57.373 37.500 0.00 0.00 0.00 4.17
4374 4550 5.860941 TCTCTAAGTCCAAGATCACCATC 57.139 43.478 0.00 0.00 0.00 3.51
4376 4552 4.278310 TCTAAGTCCAAGATCACCATCGA 58.722 43.478 0.00 0.00 33.75 3.59
4378 4554 3.742433 AGTCCAAGATCACCATCGATC 57.258 47.619 0.00 0.00 41.85 3.69
4379 4555 3.033909 AGTCCAAGATCACCATCGATCA 58.966 45.455 0.00 0.00 43.61 2.92
4380 4556 3.452264 AGTCCAAGATCACCATCGATCAA 59.548 43.478 0.00 0.00 43.61 2.57
4381 4557 3.806521 GTCCAAGATCACCATCGATCAAG 59.193 47.826 0.00 0.00 43.61 3.02
4382 4558 3.706086 TCCAAGATCACCATCGATCAAGA 59.294 43.478 0.00 0.00 43.61 3.02
4384 4560 4.436332 CAAGATCACCATCGATCAAGACA 58.564 43.478 0.00 0.00 43.61 3.41
4385 4561 4.052159 AGATCACCATCGATCAAGACAC 57.948 45.455 0.00 0.00 43.61 3.67
4387 4563 3.236632 TCACCATCGATCAAGACACAG 57.763 47.619 0.00 0.00 0.00 3.66
4388 4564 2.562738 TCACCATCGATCAAGACACAGT 59.437 45.455 0.00 0.00 0.00 3.55
4390 4566 2.300152 ACCATCGATCAAGACACAGTGT 59.700 45.455 5.68 5.68 0.00 3.55
4391 4567 2.669924 CCATCGATCAAGACACAGTGTG 59.330 50.000 21.77 21.77 39.75 3.82
4392 4568 3.578688 CATCGATCAAGACACAGTGTGA 58.421 45.455 29.58 7.19 36.96 3.58
4393 4569 3.013276 TCGATCAAGACACAGTGTGAC 57.987 47.619 29.58 22.82 36.96 3.67
4394 4570 2.623416 TCGATCAAGACACAGTGTGACT 59.377 45.455 29.58 24.73 39.85 3.41
4395 4571 3.068165 TCGATCAAGACACAGTGTGACTT 59.932 43.478 27.88 27.88 45.72 3.01
4396 4572 4.277423 TCGATCAAGACACAGTGTGACTTA 59.723 41.667 31.06 21.97 43.83 2.24
4397 4573 5.048013 TCGATCAAGACACAGTGTGACTTAT 60.048 40.000 31.06 24.48 43.83 1.73
4398 4574 5.635280 CGATCAAGACACAGTGTGACTTATT 59.365 40.000 31.06 23.34 43.83 1.40
4400 4576 6.161855 TCAAGACACAGTGTGACTTATTCT 57.838 37.500 31.06 19.44 43.83 2.40
4401 4577 5.985530 TCAAGACACAGTGTGACTTATTCTG 59.014 40.000 31.06 22.46 43.83 3.02
4402 4578 4.310769 AGACACAGTGTGACTTATTCTGC 58.689 43.478 29.58 5.55 35.32 4.26
4404 4580 4.450976 ACACAGTGTGACTTATTCTGCAA 58.549 39.130 29.58 0.00 36.96 4.08
4406 4582 3.499918 ACAGTGTGACTTATTCTGCAAGC 59.500 43.478 0.00 0.00 0.00 4.01
4407 4583 3.750130 CAGTGTGACTTATTCTGCAAGCT 59.250 43.478 0.00 0.00 0.00 3.74
4409 4585 4.214971 AGTGTGACTTATTCTGCAAGCTTG 59.785 41.667 22.44 22.44 0.00 4.01
4410 4586 4.023707 GTGTGACTTATTCTGCAAGCTTGT 60.024 41.667 26.55 9.88 0.00 3.16
4411 4587 4.580167 TGTGACTTATTCTGCAAGCTTGTT 59.420 37.500 26.55 10.06 0.00 2.83
4412 4588 5.067674 TGTGACTTATTCTGCAAGCTTGTTT 59.932 36.000 26.55 10.38 0.00 2.83
4413 4589 5.979517 GTGACTTATTCTGCAAGCTTGTTTT 59.020 36.000 26.55 10.71 0.00 2.43
4414 4590 5.978919 TGACTTATTCTGCAAGCTTGTTTTG 59.021 36.000 26.55 14.28 0.00 2.44
4418 4594 1.136695 TCTGCAAGCTTGTTTTGGTGG 59.863 47.619 26.55 8.94 0.00 4.61
4419 4595 0.461693 TGCAAGCTTGTTTTGGTGGC 60.462 50.000 26.55 10.25 32.93 5.01
4421 4597 1.743431 GCAAGCTTGTTTTGGTGGCTT 60.743 47.619 26.55 0.00 42.85 4.35
4426 4602 2.354259 CTTGTTTTGGTGGCTTTGCAA 58.646 42.857 0.00 0.00 0.00 4.08
4433 4609 1.527433 GGTGGCTTTGCAACCCTCTC 61.527 60.000 14.51 6.90 46.35 3.20
4443 4619 1.473434 GCAACCCTCTCCAAGGTATCG 60.473 57.143 0.00 0.00 44.56 2.92
4451 4635 1.949525 CTCCAAGGTATCGCAATTGGG 59.050 52.381 15.98 15.98 42.05 4.12
4470 4654 4.630111 TGGGCATTCAAATTTTGTGTCTC 58.370 39.130 8.89 0.00 0.00 3.36
4556 4740 3.696548 GGATTTCCTGTTGTTGGGATCTC 59.303 47.826 0.00 0.00 0.00 2.75
4636 4820 0.804989 CTGTTGTTTCCCGATCCAGC 59.195 55.000 0.00 0.00 0.00 4.85
4644 4828 0.982852 TCCCGATCCAGCAATCACCT 60.983 55.000 0.00 0.00 0.00 4.00
4656 4840 5.533903 CCAGCAATCACCTATCTTATGCTTT 59.466 40.000 0.00 0.00 40.40 3.51
4674 4858 1.990160 TTTGTGGTTCGTGAGCCCCT 61.990 55.000 0.00 0.00 0.00 4.79
4684 4868 1.266989 CGTGAGCCCCTTTTCTTTGAC 59.733 52.381 0.00 0.00 0.00 3.18
4685 4869 2.306847 GTGAGCCCCTTTTCTTTGACA 58.693 47.619 0.00 0.00 0.00 3.58
4727 4911 5.068723 GGTATTCCTCCTCAATCACGTTCTA 59.931 44.000 0.00 0.00 0.00 2.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 67 2.417515 CGTCTAAGGAAGGGAAGCTGAC 60.418 54.545 0.00 0.00 0.00 3.51
93 99 3.841643 CAATGGAGATGGAAAGCAACAC 58.158 45.455 0.00 0.00 0.00 3.32
110 116 0.109458 AGCAAGCATGTGACGCAATG 60.109 50.000 0.00 0.00 0.00 2.82
153 159 4.496336 GCAGGGCACAGCTAGGGG 62.496 72.222 0.00 0.00 0.00 4.79
209 215 0.318360 TGTTGCACTGTAGTCGTCCG 60.318 55.000 0.00 0.00 0.00 4.79
297 304 2.804090 GAGTTCACGGTCGCGGAC 60.804 66.667 6.13 2.87 0.00 4.79
364 371 0.578211 TTTCGTTCTTCCGTTGCGTC 59.422 50.000 0.00 0.00 0.00 5.19
365 372 0.302589 GTTTCGTTCTTCCGTTGCGT 59.697 50.000 0.00 0.00 0.00 5.24
366 373 0.716926 CGTTTCGTTCTTCCGTTGCG 60.717 55.000 0.00 0.00 0.00 4.85
367 374 0.578211 TCGTTTCGTTCTTCCGTTGC 59.422 50.000 0.00 0.00 0.00 4.17
368 375 1.589320 TGTCGTTTCGTTCTTCCGTTG 59.411 47.619 0.00 0.00 0.00 4.10
369 376 1.925229 TGTCGTTTCGTTCTTCCGTT 58.075 45.000 0.00 0.00 0.00 4.44
370 377 1.790623 CATGTCGTTTCGTTCTTCCGT 59.209 47.619 0.00 0.00 0.00 4.69
371 378 2.055838 TCATGTCGTTTCGTTCTTCCG 58.944 47.619 0.00 0.00 0.00 4.30
372 379 3.314553 TCTCATGTCGTTTCGTTCTTCC 58.685 45.455 0.00 0.00 0.00 3.46
373 380 4.966850 TTCTCATGTCGTTTCGTTCTTC 57.033 40.909 0.00 0.00 0.00 2.87
502 518 3.305403 CGCGGTAAGATCATATCACAGGT 60.305 47.826 0.00 0.00 0.00 4.00
503 519 3.245797 CGCGGTAAGATCATATCACAGG 58.754 50.000 0.00 0.00 0.00 4.00
512 534 2.106131 ATGCGCGCGGTAAGATCA 59.894 55.556 33.06 19.13 0.00 2.92
602 635 1.602771 CTTCCTTCCTTCCCCGGTC 59.397 63.158 0.00 0.00 0.00 4.79
603 636 1.923909 CCTTCCTTCCTTCCCCGGT 60.924 63.158 0.00 0.00 0.00 5.28
605 638 2.272471 GCCTTCCTTCCTTCCCCG 59.728 66.667 0.00 0.00 0.00 5.73
606 639 2.272471 CGCCTTCCTTCCTTCCCC 59.728 66.667 0.00 0.00 0.00 4.81
917 982 2.025969 CAGCTCACACACTGCCTCG 61.026 63.158 0.00 0.00 0.00 4.63
922 987 3.871006 TCAAACTAACAGCTCACACACTG 59.129 43.478 0.00 0.00 39.86 3.66
923 988 4.122776 CTCAAACTAACAGCTCACACACT 58.877 43.478 0.00 0.00 0.00 3.55
924 989 3.303395 GCTCAAACTAACAGCTCACACAC 60.303 47.826 0.00 0.00 0.00 3.82
925 990 2.872245 GCTCAAACTAACAGCTCACACA 59.128 45.455 0.00 0.00 0.00 3.72
926 991 2.096713 CGCTCAAACTAACAGCTCACAC 60.097 50.000 0.00 0.00 0.00 3.82
927 992 2.135139 CGCTCAAACTAACAGCTCACA 58.865 47.619 0.00 0.00 0.00 3.58
928 993 1.461127 CCGCTCAAACTAACAGCTCAC 59.539 52.381 0.00 0.00 0.00 3.51
929 994 1.608025 CCCGCTCAAACTAACAGCTCA 60.608 52.381 0.00 0.00 0.00 4.26
930 995 1.079503 CCCGCTCAAACTAACAGCTC 58.920 55.000 0.00 0.00 0.00 4.09
935 1000 1.732809 GCTTCTCCCGCTCAAACTAAC 59.267 52.381 0.00 0.00 0.00 2.34
937 1002 1.066858 CAGCTTCTCCCGCTCAAACTA 60.067 52.381 0.00 0.00 35.07 2.24
938 1003 0.321122 CAGCTTCTCCCGCTCAAACT 60.321 55.000 0.00 0.00 35.07 2.66
947 1012 2.671682 GTCCACCCAGCTTCTCCC 59.328 66.667 0.00 0.00 0.00 4.30
949 1014 2.232298 CTCCGTCCACCCAGCTTCTC 62.232 65.000 0.00 0.00 0.00 2.87
950 1015 2.203788 TCCGTCCACCCAGCTTCT 60.204 61.111 0.00 0.00 0.00 2.85
997 1062 1.115467 CTACCACGGCTCCTCATCTT 58.885 55.000 0.00 0.00 0.00 2.40
1109 1174 4.162812 CGAGCAAGTAAGAGAGACAGAAC 58.837 47.826 0.00 0.00 0.00 3.01
1114 1179 3.562567 ACACGAGCAAGTAAGAGAGAC 57.437 47.619 0.00 0.00 0.00 3.36
1117 1182 2.891580 AGGAACACGAGCAAGTAAGAGA 59.108 45.455 0.00 0.00 0.00 3.10
1118 1183 3.057174 AGAGGAACACGAGCAAGTAAGAG 60.057 47.826 0.00 0.00 0.00 2.85
1119 1184 2.891580 AGAGGAACACGAGCAAGTAAGA 59.108 45.455 0.00 0.00 0.00 2.10
1120 1185 3.305398 AGAGGAACACGAGCAAGTAAG 57.695 47.619 0.00 0.00 0.00 2.34
1121 1186 3.746045 AAGAGGAACACGAGCAAGTAA 57.254 42.857 0.00 0.00 0.00 2.24
1122 1187 3.069016 TGAAAGAGGAACACGAGCAAGTA 59.931 43.478 0.00 0.00 0.00 2.24
1123 1188 2.158957 TGAAAGAGGAACACGAGCAAGT 60.159 45.455 0.00 0.00 0.00 3.16
1124 1189 2.478134 CTGAAAGAGGAACACGAGCAAG 59.522 50.000 0.00 0.00 34.07 4.01
1125 1190 2.483876 CTGAAAGAGGAACACGAGCAA 58.516 47.619 0.00 0.00 34.07 3.91
1126 1191 1.873903 GCTGAAAGAGGAACACGAGCA 60.874 52.381 0.00 0.00 34.07 4.26
1127 1192 0.793250 GCTGAAAGAGGAACACGAGC 59.207 55.000 0.00 0.00 34.07 5.03
1130 1195 1.001406 AGAGGCTGAAAGAGGAACACG 59.999 52.381 0.00 0.00 34.07 4.49
1131 1196 2.301583 AGAGAGGCTGAAAGAGGAACAC 59.698 50.000 0.00 0.00 34.07 3.32
1142 1207 4.772624 AGTGTTACATGTAAGAGAGGCTGA 59.227 41.667 18.56 0.00 0.00 4.26
1146 1211 6.071896 TCAGACAGTGTTACATGTAAGAGAGG 60.072 42.308 18.56 11.49 0.00 3.69
1151 1216 8.988064 ATAGTTCAGACAGTGTTACATGTAAG 57.012 34.615 18.56 9.48 0.00 2.34
1189 1270 4.415881 AATCGTACCAACCATCTGCATA 57.584 40.909 0.00 0.00 0.00 3.14
1263 1344 9.332301 CTACTACTGAAAACTACTTCGAGAAAG 57.668 37.037 0.00 0.00 41.08 2.62
1280 1361 3.082548 AGAAACTCGCAGCTACTACTGA 58.917 45.455 0.00 0.00 40.25 3.41
1308 1389 4.218852 AGCTCTGTCAAACTACTACACTCC 59.781 45.833 0.00 0.00 0.00 3.85
1315 1396 3.235200 AGACCAGCTCTGTCAAACTACT 58.765 45.455 13.81 0.00 0.00 2.57
1394 1475 3.967987 AGTAGTTAGCTCTAACCCCATGG 59.032 47.826 4.14 4.14 44.79 3.66
1404 1485 5.469210 TTCCCTTCCTAGTAGTTAGCTCT 57.531 43.478 0.00 0.00 0.00 4.09
1405 1486 5.834204 TCATTCCCTTCCTAGTAGTTAGCTC 59.166 44.000 0.00 0.00 0.00 4.09
1406 1487 5.778542 TCATTCCCTTCCTAGTAGTTAGCT 58.221 41.667 0.00 0.00 0.00 3.32
1407 1488 5.011227 CCTCATTCCCTTCCTAGTAGTTAGC 59.989 48.000 0.00 0.00 0.00 3.09
1408 1489 5.540719 CCCTCATTCCCTTCCTAGTAGTTAG 59.459 48.000 0.00 0.00 0.00 2.34
1409 1490 5.464984 CCCTCATTCCCTTCCTAGTAGTTA 58.535 45.833 0.00 0.00 0.00 2.24
1410 1491 4.299485 CCCTCATTCCCTTCCTAGTAGTT 58.701 47.826 0.00 0.00 0.00 2.24
1412 1493 3.243724 CCCCTCATTCCCTTCCTAGTAG 58.756 54.545 0.00 0.00 0.00 2.57
1413 1494 2.696158 GCCCCTCATTCCCTTCCTAGTA 60.696 54.545 0.00 0.00 0.00 1.82
1423 1506 1.762708 TTCATTTCGCCCCTCATTCC 58.237 50.000 0.00 0.00 0.00 3.01
1429 1512 1.094785 CGTCATTTCATTTCGCCCCT 58.905 50.000 0.00 0.00 0.00 4.79
1433 1516 1.171876 GCGTCGTCATTTCATTTCGC 58.828 50.000 0.00 0.00 36.06 4.70
1436 1519 1.135689 GCAGGCGTCGTCATTTCATTT 60.136 47.619 0.00 0.00 0.00 2.32
1437 1520 0.447801 GCAGGCGTCGTCATTTCATT 59.552 50.000 0.00 0.00 0.00 2.57
1439 1522 2.032634 GGCAGGCGTCGTCATTTCA 61.033 57.895 0.00 0.00 0.00 2.69
1440 1523 2.750888 GGGCAGGCGTCGTCATTTC 61.751 63.158 0.00 0.00 0.00 2.17
1622 1722 6.469139 TTCAATTATGCGACGAAAAGTGTA 57.531 33.333 0.00 0.00 0.00 2.90
1634 1734 6.292129 CGTAGACTAATGCTTCAATTATGCG 58.708 40.000 0.00 0.00 0.00 4.73
1864 1975 3.068307 ACTTCCATCAGTCCGCTGTATAC 59.932 47.826 0.00 0.00 43.05 1.47
1955 2066 5.925506 TTAATCACCACTATTCCACGAGA 57.074 39.130 0.00 0.00 0.00 4.04
1987 2098 1.850640 CACTGAACGCCACGTACAC 59.149 57.895 0.00 0.00 39.99 2.90
2072 2183 0.730494 CCGTCGTCTTGTACCCGTTC 60.730 60.000 0.00 0.00 0.00 3.95
2177 2288 3.749870 AGAGCCGAGGGAGAGCCT 61.750 66.667 0.00 0.00 0.00 4.58
2340 2451 4.677378 CAGCGTAAAGTTCTCGGATATCAG 59.323 45.833 4.83 0.00 0.00 2.90
2342 2453 4.856664 TCAGCGTAAAGTTCTCGGATATC 58.143 43.478 0.00 0.00 0.00 1.63
2343 2454 4.913335 TCAGCGTAAAGTTCTCGGATAT 57.087 40.909 2.74 0.00 0.00 1.63
2344 2455 4.418392 GTTCAGCGTAAAGTTCTCGGATA 58.582 43.478 2.74 0.00 0.00 2.59
2345 2456 3.251571 GTTCAGCGTAAAGTTCTCGGAT 58.748 45.455 2.74 0.00 0.00 4.18
2346 2457 2.669364 GTTCAGCGTAAAGTTCTCGGA 58.331 47.619 2.74 0.00 0.00 4.55
2347 2458 1.385743 CGTTCAGCGTAAAGTTCTCGG 59.614 52.381 2.74 0.00 35.54 4.63
2348 2459 2.745886 CGTTCAGCGTAAAGTTCTCG 57.254 50.000 0.00 0.00 35.54 4.04
2360 2471 1.580845 AATCAGGCAGCACGTTCAGC 61.581 55.000 0.00 0.00 0.00 4.26
2361 2472 0.877071 AAATCAGGCAGCACGTTCAG 59.123 50.000 0.00 0.00 0.00 3.02
2363 2474 1.160137 AGAAATCAGGCAGCACGTTC 58.840 50.000 0.00 0.00 0.00 3.95
2364 2475 1.609208 AAGAAATCAGGCAGCACGTT 58.391 45.000 0.00 0.00 0.00 3.99
2365 2476 2.076863 GTAAGAAATCAGGCAGCACGT 58.923 47.619 0.00 0.00 0.00 4.49
2367 2478 1.745653 GGGTAAGAAATCAGGCAGCAC 59.254 52.381 0.00 0.00 0.00 4.40
2368 2479 1.340991 GGGGTAAGAAATCAGGCAGCA 60.341 52.381 0.00 0.00 0.00 4.41
2369 2480 1.393603 GGGGTAAGAAATCAGGCAGC 58.606 55.000 0.00 0.00 0.00 5.25
2371 2482 1.564348 GAGGGGGTAAGAAATCAGGCA 59.436 52.381 0.00 0.00 0.00 4.75
2372 2483 1.475213 CGAGGGGGTAAGAAATCAGGC 60.475 57.143 0.00 0.00 0.00 4.85
2373 2484 1.838077 ACGAGGGGGTAAGAAATCAGG 59.162 52.381 0.00 0.00 0.00 3.86
2375 2486 2.907696 TCAACGAGGGGGTAAGAAATCA 59.092 45.455 0.00 0.00 0.00 2.57
2376 2487 3.622166 TCAACGAGGGGGTAAGAAATC 57.378 47.619 0.00 0.00 0.00 2.17
2378 2489 4.376225 AAATCAACGAGGGGGTAAGAAA 57.624 40.909 0.00 0.00 0.00 2.52
2379 2490 4.076394 CAAAATCAACGAGGGGGTAAGAA 58.924 43.478 0.00 0.00 0.00 2.52
2381 2492 2.163613 GCAAAATCAACGAGGGGGTAAG 59.836 50.000 0.00 0.00 0.00 2.34
2384 2495 0.178975 TGCAAAATCAACGAGGGGGT 60.179 50.000 0.00 0.00 0.00 4.95
2385 2496 1.185315 ATGCAAAATCAACGAGGGGG 58.815 50.000 0.00 0.00 0.00 5.40
2387 2498 3.911868 TGAAATGCAAAATCAACGAGGG 58.088 40.909 0.00 0.00 0.00 4.30
2388 2499 4.797471 TCTGAAATGCAAAATCAACGAGG 58.203 39.130 0.00 0.00 0.00 4.63
2389 2500 6.748321 CATTCTGAAATGCAAAATCAACGAG 58.252 36.000 0.00 0.00 36.15 4.18
2390 2501 6.693761 CATTCTGAAATGCAAAATCAACGA 57.306 33.333 0.00 0.00 36.15 3.85
2530 2654 0.307760 GAAGGTCAAGTTGGCACGTG 59.692 55.000 12.28 12.28 33.96 4.49
2531 2655 0.818040 GGAAGGTCAAGTTGGCACGT 60.818 55.000 10.13 0.00 0.00 4.49
2532 2656 1.515521 GGGAAGGTCAAGTTGGCACG 61.516 60.000 10.13 0.00 0.00 5.34
2534 2658 0.467290 GTGGGAAGGTCAAGTTGGCA 60.467 55.000 10.13 0.00 0.00 4.92
2545 2669 1.405821 CTGCTACTCTACGTGGGAAGG 59.594 57.143 0.00 0.00 0.00 3.46
2552 2676 3.409570 TCACTCAACTGCTACTCTACGT 58.590 45.455 0.00 0.00 0.00 3.57
2553 2677 3.729462 GCTCACTCAACTGCTACTCTACG 60.729 52.174 0.00 0.00 0.00 3.51
2555 2679 2.420372 CGCTCACTCAACTGCTACTCTA 59.580 50.000 0.00 0.00 0.00 2.43
2558 2682 0.389166 GCGCTCACTCAACTGCTACT 60.389 55.000 0.00 0.00 0.00 2.57
2559 2683 1.678269 CGCGCTCACTCAACTGCTAC 61.678 60.000 5.56 0.00 0.00 3.58
2561 2685 2.736236 CGCGCTCACTCAACTGCT 60.736 61.111 5.56 0.00 0.00 4.24
2562 2686 2.724708 CTCGCGCTCACTCAACTGC 61.725 63.158 5.56 0.00 0.00 4.40
2563 2687 0.109735 TACTCGCGCTCACTCAACTG 60.110 55.000 5.56 0.00 0.00 3.16
2564 2688 0.596577 TTACTCGCGCTCACTCAACT 59.403 50.000 5.56 0.00 0.00 3.16
2565 2689 1.584308 GATTACTCGCGCTCACTCAAC 59.416 52.381 5.56 0.00 0.00 3.18
2566 2690 1.472878 AGATTACTCGCGCTCACTCAA 59.527 47.619 5.56 0.00 0.00 3.02
2567 2691 1.095600 AGATTACTCGCGCTCACTCA 58.904 50.000 5.56 0.00 0.00 3.41
2568 2692 1.064208 TCAGATTACTCGCGCTCACTC 59.936 52.381 5.56 0.00 0.00 3.51
2569 2693 1.095600 TCAGATTACTCGCGCTCACT 58.904 50.000 5.56 0.00 0.00 3.41
2570 2694 1.783711 CATCAGATTACTCGCGCTCAC 59.216 52.381 5.56 0.00 0.00 3.51
2571 2695 1.865655 GCATCAGATTACTCGCGCTCA 60.866 52.381 5.56 0.00 0.00 4.26
2572 2696 0.781191 GCATCAGATTACTCGCGCTC 59.219 55.000 5.56 0.00 0.00 5.03
2573 2697 0.936764 CGCATCAGATTACTCGCGCT 60.937 55.000 5.56 0.00 35.97 5.92
2574 2698 1.209275 ACGCATCAGATTACTCGCGC 61.209 55.000 0.00 0.00 46.16 6.86
2579 2703 4.082787 CCCAAAAACACGCATCAGATTACT 60.083 41.667 0.00 0.00 0.00 2.24
2585 2709 0.667184 GGCCCAAAAACACGCATCAG 60.667 55.000 0.00 0.00 0.00 2.90
2590 2714 1.660264 CTTCGGCCCAAAAACACGC 60.660 57.895 0.00 0.00 0.00 5.34
2591 2715 1.660264 GCTTCGGCCCAAAAACACG 60.660 57.895 0.00 0.00 34.32 4.49
2594 2718 0.039165 CTCTGCTTCGGCCCAAAAAC 60.039 55.000 0.00 0.00 40.91 2.43
2599 2723 3.393970 CTCCTCTGCTTCGGCCCA 61.394 66.667 0.00 0.00 40.91 5.36
2601 2725 2.585791 CTTCCTCCTCTGCTTCGGCC 62.586 65.000 0.00 0.00 40.91 6.13
2602 2726 1.153469 CTTCCTCCTCTGCTTCGGC 60.153 63.158 0.00 0.00 42.19 5.54
2604 2728 0.459489 CCTCTTCCTCCTCTGCTTCG 59.541 60.000 0.00 0.00 0.00 3.79
2605 2729 1.859302 TCCTCTTCCTCCTCTGCTTC 58.141 55.000 0.00 0.00 0.00 3.86
2696 2824 0.744771 CCAAGCGGGAAGTCCTTAGC 60.745 60.000 0.00 1.59 40.01 3.09
3092 3220 2.751436 CTCCATGGTGGCGTTGGG 60.751 66.667 12.58 0.00 37.47 4.12
3482 3610 0.036388 CACATCTGGTAGCACCCGTT 60.036 55.000 0.00 0.00 37.50 4.44
3483 3611 1.596934 CACATCTGGTAGCACCCGT 59.403 57.895 0.00 0.00 37.50 5.28
3610 3738 0.528684 GGTAGCCGCTGAAGCTGTAG 60.529 60.000 2.16 0.00 41.71 2.74
3667 3795 2.032681 AAGGTGGCCTGCTTCGAC 59.967 61.111 3.32 0.00 32.13 4.20
3741 3869 4.201980 GCCACTCACATATACTACGACACA 60.202 45.833 0.00 0.00 0.00 3.72
3747 3875 2.626743 ACCGGCCACTCACATATACTAC 59.373 50.000 0.00 0.00 0.00 2.73
3748 3876 2.626266 CACCGGCCACTCACATATACTA 59.374 50.000 0.00 0.00 0.00 1.82
3749 3877 1.412710 CACCGGCCACTCACATATACT 59.587 52.381 0.00 0.00 0.00 2.12
3750 3878 1.540363 CCACCGGCCACTCACATATAC 60.540 57.143 0.00 0.00 0.00 1.47
3751 3879 0.756294 CCACCGGCCACTCACATATA 59.244 55.000 0.00 0.00 0.00 0.86
3752 3880 1.526887 CCACCGGCCACTCACATAT 59.473 57.895 0.00 0.00 0.00 1.78
3815 3944 2.860136 CACAAGCGACGATATGTGTCAT 59.140 45.455 15.48 0.00 38.62 3.06
3832 3961 5.892524 AGTTTAGTAACCACTACCCACAA 57.107 39.130 0.00 0.00 36.98 3.33
3853 3984 8.897457 ACATAATCGTTTGCTCGAGTATATAG 57.103 34.615 15.13 3.96 44.95 1.31
3892 4068 7.894708 TGTCACCATGTCATAATCATTTGTTT 58.105 30.769 0.00 0.00 0.00 2.83
3909 4085 2.581354 GAGGCGAGCTGTCACCAT 59.419 61.111 0.00 0.00 0.00 3.55
3912 4088 1.645704 TAGACGAGGCGAGCTGTCAC 61.646 60.000 0.00 0.00 33.83 3.67
3914 4090 1.353804 CTAGACGAGGCGAGCTGTC 59.646 63.158 0.00 0.00 0.00 3.51
3916 4092 0.305313 GTACTAGACGAGGCGAGCTG 59.695 60.000 0.00 0.00 0.00 4.24
3918 4094 0.027848 GTGTACTAGACGAGGCGAGC 59.972 60.000 0.00 0.00 0.00 5.03
3920 4096 1.086067 CCGTGTACTAGACGAGGCGA 61.086 60.000 7.30 0.00 39.21 5.54
3921 4097 1.351012 CCGTGTACTAGACGAGGCG 59.649 63.158 7.30 0.00 39.21 5.52
3922 4098 1.063811 GCCGTGTACTAGACGAGGC 59.936 63.158 7.30 6.01 43.16 4.70
3924 4100 2.284684 CACTAGCCGTGTACTAGACGAG 59.715 54.545 7.30 0.25 39.64 4.18
3925 4101 2.274437 CACTAGCCGTGTACTAGACGA 58.726 52.381 7.30 0.00 39.64 4.20
3926 4102 2.733820 CACTAGCCGTGTACTAGACG 57.266 55.000 0.00 0.00 39.64 4.18
3996 4172 8.090831 GCTTGTCTCTTATGATGACCATACATA 58.909 37.037 0.00 0.00 37.46 2.29
3997 4173 6.933521 GCTTGTCTCTTATGATGACCATACAT 59.066 38.462 0.00 0.00 37.46 2.29
3998 4174 6.127083 TGCTTGTCTCTTATGATGACCATACA 60.127 38.462 0.00 0.00 37.46 2.29
3999 4175 6.283694 TGCTTGTCTCTTATGATGACCATAC 58.716 40.000 0.00 0.00 37.46 2.39
4000 4176 6.484364 TGCTTGTCTCTTATGATGACCATA 57.516 37.500 0.00 0.00 36.71 2.74
4001 4177 5.363562 TGCTTGTCTCTTATGATGACCAT 57.636 39.130 0.00 0.00 39.25 3.55
4002 4178 4.824479 TGCTTGTCTCTTATGATGACCA 57.176 40.909 0.00 0.00 0.00 4.02
4003 4179 4.024218 GCATGCTTGTCTCTTATGATGACC 60.024 45.833 11.37 0.00 0.00 4.02
4004 4180 4.815308 AGCATGCTTGTCTCTTATGATGAC 59.185 41.667 16.30 0.00 0.00 3.06
4005 4181 5.032327 AGCATGCTTGTCTCTTATGATGA 57.968 39.130 16.30 0.00 0.00 2.92
4007 4183 5.752892 CAAGCATGCTTGTCTCTTATGAT 57.247 39.130 40.10 12.54 45.91 2.45
4021 4197 2.514205 AAGTTGGTTGACAAGCATGC 57.486 45.000 19.97 10.51 40.38 4.06
4022 4198 2.540931 GCAAAGTTGGTTGACAAGCATG 59.459 45.455 19.97 15.65 40.38 4.06
4024 4200 1.547820 TGCAAAGTTGGTTGACAAGCA 59.452 42.857 15.84 15.84 40.38 3.91
4025 4201 2.292103 TGCAAAGTTGGTTGACAAGC 57.708 45.000 10.46 10.46 40.38 4.01
4026 4202 6.272318 TCTTTATGCAAAGTTGGTTGACAAG 58.728 36.000 0.00 0.00 41.66 3.16
4027 4203 6.214191 TCTTTATGCAAAGTTGGTTGACAA 57.786 33.333 0.00 0.00 41.66 3.18
4028 4204 5.843673 TCTTTATGCAAAGTTGGTTGACA 57.156 34.783 0.00 0.00 41.66 3.58
4030 4206 6.928492 GGAATTCTTTATGCAAAGTTGGTTGA 59.072 34.615 5.23 0.00 41.66 3.18
4031 4207 6.705381 TGGAATTCTTTATGCAAAGTTGGTTG 59.295 34.615 5.23 0.00 41.66 3.77
4032 4208 6.705825 GTGGAATTCTTTATGCAAAGTTGGTT 59.294 34.615 5.23 0.00 41.66 3.67
4033 4209 6.183360 TGTGGAATTCTTTATGCAAAGTTGGT 60.183 34.615 5.23 0.00 41.66 3.67
4034 4210 6.222389 TGTGGAATTCTTTATGCAAAGTTGG 58.778 36.000 5.23 0.00 41.66 3.77
4035 4211 7.652909 TCTTGTGGAATTCTTTATGCAAAGTTG 59.347 33.333 5.23 0.00 41.66 3.16
4036 4212 7.725251 TCTTGTGGAATTCTTTATGCAAAGTT 58.275 30.769 5.23 0.00 41.66 2.66
4037 4213 7.288810 TCTTGTGGAATTCTTTATGCAAAGT 57.711 32.000 5.23 0.00 41.66 2.66
4038 4214 7.869429 ACTTCTTGTGGAATTCTTTATGCAAAG 59.131 33.333 5.23 0.00 36.94 2.77
4040 4216 7.288810 ACTTCTTGTGGAATTCTTTATGCAA 57.711 32.000 5.23 2.05 33.01 4.08
4041 4217 6.899393 ACTTCTTGTGGAATTCTTTATGCA 57.101 33.333 5.23 0.00 33.01 3.96
4054 4230 9.716507 CGTGGAATATAATTTTACTTCTTGTGG 57.283 33.333 0.00 0.00 0.00 4.17
4059 4235 9.590451 TCGAACGTGGAATATAATTTTACTTCT 57.410 29.630 0.00 0.00 0.00 2.85
4060 4236 9.845305 CTCGAACGTGGAATATAATTTTACTTC 57.155 33.333 0.00 0.00 0.00 3.01
4061 4237 9.590451 TCTCGAACGTGGAATATAATTTTACTT 57.410 29.630 0.00 0.00 0.00 2.24
4067 4243 9.716507 CAATTTTCTCGAACGTGGAATATAATT 57.283 29.630 0.00 0.00 0.00 1.40
4068 4244 8.889717 ACAATTTTCTCGAACGTGGAATATAAT 58.110 29.630 0.00 0.00 0.00 1.28
4072 4248 5.615984 GCACAATTTTCTCGAACGTGGAATA 60.616 40.000 0.00 0.00 0.00 1.75
4073 4249 4.783242 CACAATTTTCTCGAACGTGGAAT 58.217 39.130 0.00 0.00 0.00 3.01
4075 4251 2.032377 GCACAATTTTCTCGAACGTGGA 60.032 45.455 0.00 0.00 0.00 4.02
4076 4252 2.307049 GCACAATTTTCTCGAACGTGG 58.693 47.619 0.00 0.00 0.00 4.94
4077 4253 2.032030 AGGCACAATTTTCTCGAACGTG 60.032 45.455 0.00 0.00 0.00 4.49
4084 4260 0.179189 CGGCGAGGCACAATTTTCTC 60.179 55.000 0.00 0.00 0.00 2.87
4089 4265 1.579429 GTTTCGGCGAGGCACAATT 59.421 52.632 10.46 0.00 0.00 2.32
4090 4266 2.677003 CGTTTCGGCGAGGCACAAT 61.677 57.895 10.46 0.00 0.00 2.71
4091 4267 2.696409 TACGTTTCGGCGAGGCACAA 62.696 55.000 10.46 0.00 35.59 3.33
4092 4268 2.696409 TTACGTTTCGGCGAGGCACA 62.696 55.000 10.46 0.00 35.59 4.57
4093 4269 1.356527 ATTACGTTTCGGCGAGGCAC 61.357 55.000 10.46 7.76 35.59 5.01
4094 4270 0.671163 AATTACGTTTCGGCGAGGCA 60.671 50.000 10.46 0.00 35.59 4.75
4095 4271 0.025898 GAATTACGTTTCGGCGAGGC 59.974 55.000 10.46 6.19 35.59 4.70
4096 4272 1.060122 GTGAATTACGTTTCGGCGAGG 59.940 52.381 10.46 6.41 35.59 4.63
4097 4273 1.722464 TGTGAATTACGTTTCGGCGAG 59.278 47.619 10.46 0.54 35.59 5.03
4098 4274 1.780806 TGTGAATTACGTTTCGGCGA 58.219 45.000 4.99 4.99 35.59 5.54
4099 4275 2.580729 TTGTGAATTACGTTTCGGCG 57.419 45.000 0.00 0.00 37.94 6.46
4100 4276 3.619729 TGTTTGTGAATTACGTTTCGGC 58.380 40.909 0.00 0.00 0.00 5.54
4101 4277 4.849383 GGATGTTTGTGAATTACGTTTCGG 59.151 41.667 0.00 0.00 0.00 4.30
4103 4279 6.084277 GGAGGATGTTTGTGAATTACGTTTC 58.916 40.000 0.00 0.00 0.00 2.78
4104 4280 5.334569 CGGAGGATGTTTGTGAATTACGTTT 60.335 40.000 0.00 0.00 0.00 3.60
4105 4281 4.153475 CGGAGGATGTTTGTGAATTACGTT 59.847 41.667 0.00 0.00 0.00 3.99
4106 4282 3.682858 CGGAGGATGTTTGTGAATTACGT 59.317 43.478 0.00 0.00 0.00 3.57
4108 4284 3.181500 GGCGGAGGATGTTTGTGAATTAC 60.181 47.826 0.00 0.00 0.00 1.89
4109 4285 3.013921 GGCGGAGGATGTTTGTGAATTA 58.986 45.455 0.00 0.00 0.00 1.40
4110 4286 1.818674 GGCGGAGGATGTTTGTGAATT 59.181 47.619 0.00 0.00 0.00 2.17
4111 4287 1.004745 AGGCGGAGGATGTTTGTGAAT 59.995 47.619 0.00 0.00 0.00 2.57
4112 4288 0.400213 AGGCGGAGGATGTTTGTGAA 59.600 50.000 0.00 0.00 0.00 3.18
4113 4289 1.207089 CTAGGCGGAGGATGTTTGTGA 59.793 52.381 0.00 0.00 0.00 3.58
4114 4290 1.207089 TCTAGGCGGAGGATGTTTGTG 59.793 52.381 0.00 0.00 0.00 3.33
4115 4291 1.207329 GTCTAGGCGGAGGATGTTTGT 59.793 52.381 0.00 0.00 0.00 2.83
4116 4292 1.473434 GGTCTAGGCGGAGGATGTTTG 60.473 57.143 0.00 0.00 0.00 2.93
4118 4294 0.032017 AGGTCTAGGCGGAGGATGTT 60.032 55.000 0.00 0.00 0.00 2.71
4119 4295 0.468400 GAGGTCTAGGCGGAGGATGT 60.468 60.000 0.00 0.00 0.00 3.06
4120 4296 1.182385 GGAGGTCTAGGCGGAGGATG 61.182 65.000 0.00 0.00 0.00 3.51
4121 4297 1.154221 GGAGGTCTAGGCGGAGGAT 59.846 63.158 0.00 0.00 0.00 3.24
4123 4299 2.128507 GTGGAGGTCTAGGCGGAGG 61.129 68.421 0.00 0.00 0.00 4.30
4124 4300 2.128507 GGTGGAGGTCTAGGCGGAG 61.129 68.421 0.00 0.00 0.00 4.63
4125 4301 2.043248 GGTGGAGGTCTAGGCGGA 60.043 66.667 0.00 0.00 0.00 5.54
4126 4302 3.528370 CGGTGGAGGTCTAGGCGG 61.528 72.222 0.00 0.00 0.00 6.13
4127 4303 4.208686 GCGGTGGAGGTCTAGGCG 62.209 72.222 0.00 0.00 0.00 5.52
4129 4305 2.427245 CCTGCGGTGGAGGTCTAGG 61.427 68.421 0.00 0.00 0.00 3.02
4130 4306 3.082579 GCCTGCGGTGGAGGTCTAG 62.083 68.421 6.23 0.00 32.60 2.43
4131 4307 3.075005 GCCTGCGGTGGAGGTCTA 61.075 66.667 6.23 0.00 32.60 2.59
4143 4319 4.752879 TTAGTCACCGCGGCCTGC 62.753 66.667 28.58 13.43 41.47 4.85
4144 4320 2.813908 GTTAGTCACCGCGGCCTG 60.814 66.667 28.58 18.10 0.00 4.85
4153 4329 1.202770 ACTGGCAAGGGTGTTAGTCAC 60.203 52.381 0.00 0.00 45.47 3.67
4154 4330 1.136828 ACTGGCAAGGGTGTTAGTCA 58.863 50.000 0.00 0.00 0.00 3.41
4156 4332 1.136828 TCACTGGCAAGGGTGTTAGT 58.863 50.000 5.42 0.00 35.26 2.24
4157 4333 1.072331 AGTCACTGGCAAGGGTGTTAG 59.928 52.381 5.42 0.00 35.26 2.34
4158 4334 1.136828 AGTCACTGGCAAGGGTGTTA 58.863 50.000 5.42 0.00 35.26 2.41
4159 4335 1.136828 TAGTCACTGGCAAGGGTGTT 58.863 50.000 5.42 0.00 35.26 3.32
4161 4337 0.687354 AGTAGTCACTGGCAAGGGTG 59.313 55.000 0.00 0.00 32.25 4.61
4162 4338 0.977395 GAGTAGTCACTGGCAAGGGT 59.023 55.000 0.00 0.00 34.21 4.34
4163 4339 0.250513 GGAGTAGTCACTGGCAAGGG 59.749 60.000 0.00 0.00 34.21 3.95
4164 4340 0.108615 CGGAGTAGTCACTGGCAAGG 60.109 60.000 0.00 0.00 34.21 3.61
4165 4341 0.108615 CCGGAGTAGTCACTGGCAAG 60.109 60.000 0.00 0.00 34.21 4.01
4166 4342 0.830444 ACCGGAGTAGTCACTGGCAA 60.830 55.000 9.46 0.00 34.21 4.52
4167 4343 0.830444 AACCGGAGTAGTCACTGGCA 60.830 55.000 9.46 0.00 34.21 4.92
4168 4344 0.108756 GAACCGGAGTAGTCACTGGC 60.109 60.000 9.46 0.00 34.21 4.85
4169 4345 0.531200 GGAACCGGAGTAGTCACTGG 59.469 60.000 9.46 0.80 34.21 4.00
4170 4346 0.170561 CGGAACCGGAGTAGTCACTG 59.829 60.000 9.46 0.00 34.21 3.66
4183 4359 4.754667 GACGTGGGAGCCGGAACC 62.755 72.222 5.05 7.31 0.00 3.62
4184 4360 4.754667 GGACGTGGGAGCCGGAAC 62.755 72.222 5.05 0.00 0.00 3.62
4197 4373 1.136984 GACTACTGGCACGAGGACG 59.863 63.158 0.00 0.00 45.75 4.79
4199 4375 0.328592 AGAGACTACTGGCACGAGGA 59.671 55.000 0.00 0.00 0.00 3.71
4200 4376 1.133407 GAAGAGACTACTGGCACGAGG 59.867 57.143 0.00 0.00 0.00 4.63
4201 4377 2.088423 AGAAGAGACTACTGGCACGAG 58.912 52.381 0.00 0.00 0.00 4.18
4202 4378 2.085320 GAGAAGAGACTACTGGCACGA 58.915 52.381 0.00 0.00 0.00 4.35
4203 4379 1.813178 TGAGAAGAGACTACTGGCACG 59.187 52.381 0.00 0.00 0.00 5.34
4204 4380 2.558795 TGTGAGAAGAGACTACTGGCAC 59.441 50.000 0.00 0.00 0.00 5.01
4205 4381 2.876581 TGTGAGAAGAGACTACTGGCA 58.123 47.619 0.00 0.00 0.00 4.92
4207 4383 6.097554 ACCATATTGTGAGAAGAGACTACTGG 59.902 42.308 0.00 0.00 0.00 4.00
4208 4384 6.977502 CACCATATTGTGAGAAGAGACTACTG 59.022 42.308 0.56 0.00 38.55 2.74
4209 4385 6.406400 GCACCATATTGTGAGAAGAGACTACT 60.406 42.308 10.98 0.00 38.55 2.57
4210 4386 5.751028 GCACCATATTGTGAGAAGAGACTAC 59.249 44.000 10.98 0.00 38.55 2.73
4213 4389 4.764172 AGCACCATATTGTGAGAAGAGAC 58.236 43.478 10.98 0.00 38.55 3.36
4214 4390 4.713814 AGAGCACCATATTGTGAGAAGAGA 59.286 41.667 10.98 0.00 38.55 3.10
4216 4392 4.141846 GGAGAGCACCATATTGTGAGAAGA 60.142 45.833 10.98 0.00 38.55 2.87
4217 4393 4.125703 GGAGAGCACCATATTGTGAGAAG 58.874 47.826 10.98 0.00 38.55 2.85
4219 4395 2.101415 CGGAGAGCACCATATTGTGAGA 59.899 50.000 10.98 0.00 38.55 3.27
4220 4396 2.101415 TCGGAGAGCACCATATTGTGAG 59.899 50.000 10.98 0.00 38.55 3.51
4222 4398 2.602257 TCGGAGAGCACCATATTGTG 57.398 50.000 2.56 2.56 39.29 3.33
4223 4399 3.393089 GATCGGAGAGCACCATATTGT 57.607 47.619 0.00 0.00 45.47 2.71
4233 4409 0.721718 CAAACCAACGATCGGAGAGC 59.278 55.000 20.98 0.00 43.63 4.09
4234 4410 2.363788 TCAAACCAACGATCGGAGAG 57.636 50.000 20.98 7.58 43.63 3.20
4264 4440 3.127425 ACCGATATAGGCCTCAAAAGC 57.873 47.619 9.68 0.00 33.69 3.51
4265 4441 4.283722 ACCTACCGATATAGGCCTCAAAAG 59.716 45.833 9.68 0.00 45.08 2.27
4267 4443 3.853207 ACCTACCGATATAGGCCTCAAA 58.147 45.455 9.68 0.00 45.08 2.69
4268 4444 3.537795 ACCTACCGATATAGGCCTCAA 57.462 47.619 9.68 0.00 45.08 3.02
4271 4447 6.338591 AGTATTACCTACCGATATAGGCCT 57.661 41.667 11.78 11.78 45.08 5.19
4272 4448 7.512992 TCTAGTATTACCTACCGATATAGGCC 58.487 42.308 1.12 0.00 45.08 5.19
4273 4449 9.218440 GATCTAGTATTACCTACCGATATAGGC 57.782 40.741 1.12 0.00 45.08 3.93
4274 4450 9.723601 GGATCTAGTATTACCTACCGATATAGG 57.276 40.741 0.00 0.00 46.41 2.57
4275 4451 9.723601 GGGATCTAGTATTACCTACCGATATAG 57.276 40.741 0.00 0.00 0.00 1.31
4276 4452 8.664079 GGGGATCTAGTATTACCTACCGATATA 58.336 40.741 0.00 0.00 0.00 0.86
4277 4453 7.422325 GGGGGATCTAGTATTACCTACCGATAT 60.422 44.444 0.00 0.00 0.00 1.63
4278 4454 6.126361 GGGGGATCTAGTATTACCTACCGATA 60.126 46.154 0.00 0.00 0.00 2.92
4279 4455 5.340695 GGGGGATCTAGTATTACCTACCGAT 60.341 48.000 0.00 0.00 0.00 4.18
4281 4457 4.017683 AGGGGGATCTAGTATTACCTACCG 60.018 50.000 0.00 0.00 0.00 4.02
4282 4458 5.016031 TGAGGGGGATCTAGTATTACCTACC 59.984 48.000 0.00 0.00 0.00 3.18
4283 4459 6.150034 TGAGGGGGATCTAGTATTACCTAC 57.850 45.833 0.00 0.00 0.00 3.18
4285 4461 5.698369 TTGAGGGGGATCTAGTATTACCT 57.302 43.478 0.00 0.00 0.00 3.08
4286 4462 6.954352 AATTGAGGGGGATCTAGTATTACC 57.046 41.667 0.00 0.00 0.00 2.85
4288 4464 9.280456 GGAATAATTGAGGGGGATCTAGTATTA 57.720 37.037 0.00 0.00 29.68 0.98
4289 4465 7.092846 CGGAATAATTGAGGGGGATCTAGTATT 60.093 40.741 0.00 0.00 31.29 1.89
4290 4466 6.384305 CGGAATAATTGAGGGGGATCTAGTAT 59.616 42.308 0.00 0.00 0.00 2.12
4291 4467 5.720041 CGGAATAATTGAGGGGGATCTAGTA 59.280 44.000 0.00 0.00 0.00 1.82
4292 4468 4.532521 CGGAATAATTGAGGGGGATCTAGT 59.467 45.833 0.00 0.00 0.00 2.57
4293 4469 4.777896 TCGGAATAATTGAGGGGGATCTAG 59.222 45.833 0.00 0.00 0.00 2.43
4295 4471 3.598264 TCGGAATAATTGAGGGGGATCT 58.402 45.455 0.00 0.00 0.00 2.75
4298 4474 3.844211 CCTATCGGAATAATTGAGGGGGA 59.156 47.826 0.00 0.00 0.00 4.81
4299 4475 3.622455 GCCTATCGGAATAATTGAGGGGG 60.622 52.174 0.00 0.00 0.00 5.40
4300 4476 3.009033 TGCCTATCGGAATAATTGAGGGG 59.991 47.826 0.00 0.00 0.00 4.79
4301 4477 4.003648 GTGCCTATCGGAATAATTGAGGG 58.996 47.826 0.00 0.00 0.00 4.30
4305 4481 4.055360 TGACGTGCCTATCGGAATAATTG 58.945 43.478 0.00 0.00 0.00 2.32
4306 4482 4.307432 CTGACGTGCCTATCGGAATAATT 58.693 43.478 0.00 0.00 0.00 1.40
4307 4483 3.306088 CCTGACGTGCCTATCGGAATAAT 60.306 47.826 0.00 0.00 0.00 1.28
4308 4484 2.035449 CCTGACGTGCCTATCGGAATAA 59.965 50.000 0.00 0.00 0.00 1.40
4309 4485 1.611977 CCTGACGTGCCTATCGGAATA 59.388 52.381 0.00 0.00 0.00 1.75
4310 4486 0.389391 CCTGACGTGCCTATCGGAAT 59.611 55.000 0.00 0.00 0.00 3.01
4313 4489 1.065928 GTCCTGACGTGCCTATCGG 59.934 63.158 0.00 0.00 0.00 4.18
4314 4490 4.711980 GTCCTGACGTGCCTATCG 57.288 61.111 0.00 0.00 0.00 2.92
4324 4500 2.338500 GACCATGAAGAACGTCCTGAC 58.662 52.381 0.00 0.00 0.00 3.51
4325 4501 1.275291 GGACCATGAAGAACGTCCTGA 59.725 52.381 8.76 0.00 41.36 3.86
4328 4504 1.275291 TGAGGACCATGAAGAACGTCC 59.725 52.381 8.13 8.13 44.31 4.79
4330 4506 3.485463 TTTGAGGACCATGAAGAACGT 57.515 42.857 0.00 0.00 0.00 3.99
4331 4507 4.697352 AGAATTTGAGGACCATGAAGAACG 59.303 41.667 0.00 0.00 0.00 3.95
4333 4509 6.131972 AGAGAATTTGAGGACCATGAAGAA 57.868 37.500 0.00 0.00 0.00 2.52
4334 4510 5.768980 AGAGAATTTGAGGACCATGAAGA 57.231 39.130 0.00 0.00 0.00 2.87
4335 4511 7.108847 ACTTAGAGAATTTGAGGACCATGAAG 58.891 38.462 0.00 0.00 0.00 3.02
4336 4512 7.020827 ACTTAGAGAATTTGAGGACCATGAA 57.979 36.000 0.00 0.00 0.00 2.57
4338 4514 5.819901 GGACTTAGAGAATTTGAGGACCATG 59.180 44.000 0.00 0.00 0.00 3.66
4339 4515 5.488919 TGGACTTAGAGAATTTGAGGACCAT 59.511 40.000 0.00 0.00 0.00 3.55
4340 4516 4.844085 TGGACTTAGAGAATTTGAGGACCA 59.156 41.667 0.00 0.00 0.00 4.02
4341 4517 5.422214 TGGACTTAGAGAATTTGAGGACC 57.578 43.478 0.00 0.00 0.00 4.46
4342 4518 6.702329 TCTTGGACTTAGAGAATTTGAGGAC 58.298 40.000 0.00 0.00 0.00 3.85
4343 4519 6.935240 TCTTGGACTTAGAGAATTTGAGGA 57.065 37.500 0.00 0.00 0.00 3.71
4344 4520 7.279758 GTGATCTTGGACTTAGAGAATTTGAGG 59.720 40.741 0.00 0.00 0.00 3.86
4345 4521 7.279758 GGTGATCTTGGACTTAGAGAATTTGAG 59.720 40.741 0.00 0.00 0.00 3.02
4346 4522 7.106239 GGTGATCTTGGACTTAGAGAATTTGA 58.894 38.462 0.00 0.00 0.00 2.69
4348 4524 7.020827 TGGTGATCTTGGACTTAGAGAATTT 57.979 36.000 0.00 0.00 0.00 1.82
4349 4525 6.627087 TGGTGATCTTGGACTTAGAGAATT 57.373 37.500 0.00 0.00 0.00 2.17
4350 4526 6.462207 CGATGGTGATCTTGGACTTAGAGAAT 60.462 42.308 0.00 0.00 0.00 2.40
4351 4527 5.163509 CGATGGTGATCTTGGACTTAGAGAA 60.164 44.000 0.00 0.00 0.00 2.87
4353 4529 4.339530 TCGATGGTGATCTTGGACTTAGAG 59.660 45.833 0.00 0.00 0.00 2.43
4354 4530 4.278310 TCGATGGTGATCTTGGACTTAGA 58.722 43.478 0.00 0.00 0.00 2.10
4355 4531 4.655762 TCGATGGTGATCTTGGACTTAG 57.344 45.455 0.00 0.00 0.00 2.18
4357 4533 3.452264 TGATCGATGGTGATCTTGGACTT 59.548 43.478 0.54 0.00 44.12 3.01
4358 4534 3.033909 TGATCGATGGTGATCTTGGACT 58.966 45.455 0.54 0.00 44.12 3.85
4359 4535 3.459232 TGATCGATGGTGATCTTGGAC 57.541 47.619 0.54 0.00 44.12 4.02
4361 4537 3.806521 GTCTTGATCGATGGTGATCTTGG 59.193 47.826 0.54 0.00 44.12 3.61
4362 4538 4.269603 GTGTCTTGATCGATGGTGATCTTG 59.730 45.833 0.54 0.00 44.12 3.02
4363 4539 4.081476 TGTGTCTTGATCGATGGTGATCTT 60.081 41.667 0.54 0.00 44.12 2.40
4364 4540 3.448660 TGTGTCTTGATCGATGGTGATCT 59.551 43.478 0.54 0.00 44.12 2.75
4365 4541 3.785486 TGTGTCTTGATCGATGGTGATC 58.215 45.455 0.54 0.00 44.07 2.92
4366 4542 3.196469 ACTGTGTCTTGATCGATGGTGAT 59.804 43.478 0.54 0.00 0.00 3.06
4368 4544 2.669924 CACTGTGTCTTGATCGATGGTG 59.330 50.000 0.54 0.00 0.00 4.17
4369 4545 2.300152 ACACTGTGTCTTGATCGATGGT 59.700 45.455 7.80 0.00 0.00 3.55
4371 4547 3.366121 GTCACACTGTGTCTTGATCGATG 59.634 47.826 11.12 0.00 34.79 3.84
4372 4548 3.256879 AGTCACACTGTGTCTTGATCGAT 59.743 43.478 11.12 0.00 34.79 3.59
4374 4550 3.018598 AGTCACACTGTGTCTTGATCG 57.981 47.619 11.12 0.00 34.79 3.69
4376 4552 6.648310 CAGAATAAGTCACACTGTGTCTTGAT 59.352 38.462 23.76 15.52 40.70 2.57
4378 4554 5.333645 GCAGAATAAGTCACACTGTGTCTTG 60.334 44.000 23.76 13.27 40.70 3.02
4379 4555 4.752101 GCAGAATAAGTCACACTGTGTCTT 59.248 41.667 20.65 20.65 42.42 3.01
4380 4556 4.202253 TGCAGAATAAGTCACACTGTGTCT 60.202 41.667 11.12 3.24 33.83 3.41
4381 4557 4.058124 TGCAGAATAAGTCACACTGTGTC 58.942 43.478 11.12 0.60 34.79 3.67
4382 4558 4.071961 TGCAGAATAAGTCACACTGTGT 57.928 40.909 7.80 7.80 34.79 3.72
4384 4560 3.499918 GCTTGCAGAATAAGTCACACTGT 59.500 43.478 0.00 0.00 0.00 3.55
4385 4561 3.750130 AGCTTGCAGAATAAGTCACACTG 59.250 43.478 0.00 0.00 0.00 3.66
4387 4563 4.023707 ACAAGCTTGCAGAATAAGTCACAC 60.024 41.667 26.27 0.00 0.00 3.82
4388 4564 4.136796 ACAAGCTTGCAGAATAAGTCACA 58.863 39.130 26.27 0.00 0.00 3.58
4390 4566 5.772825 AAACAAGCTTGCAGAATAAGTCA 57.227 34.783 26.27 0.00 0.00 3.41
4391 4567 5.403466 CCAAAACAAGCTTGCAGAATAAGTC 59.597 40.000 26.27 0.00 0.00 3.01
4392 4568 5.163416 ACCAAAACAAGCTTGCAGAATAAGT 60.163 36.000 26.27 10.65 0.00 2.24
4393 4569 5.176223 CACCAAAACAAGCTTGCAGAATAAG 59.824 40.000 26.27 10.04 0.00 1.73
4394 4570 5.049167 CACCAAAACAAGCTTGCAGAATAA 58.951 37.500 26.27 0.00 0.00 1.40
4395 4571 4.501229 CCACCAAAACAAGCTTGCAGAATA 60.501 41.667 26.27 0.00 0.00 1.75
4396 4572 3.460103 CACCAAAACAAGCTTGCAGAAT 58.540 40.909 26.27 3.26 0.00 2.40
4397 4573 2.418471 CCACCAAAACAAGCTTGCAGAA 60.418 45.455 26.27 0.00 0.00 3.02
4398 4574 1.136695 CCACCAAAACAAGCTTGCAGA 59.863 47.619 26.27 0.00 0.00 4.26
4400 4576 0.461693 GCCACCAAAACAAGCTTGCA 60.462 50.000 26.27 0.00 0.00 4.08
4401 4577 0.179076 AGCCACCAAAACAAGCTTGC 60.179 50.000 26.27 8.92 0.00 4.01
4402 4578 2.314323 AAGCCACCAAAACAAGCTTG 57.686 45.000 24.84 24.84 41.97 4.01
4404 4580 1.743431 GCAAAGCCACCAAAACAAGCT 60.743 47.619 0.00 0.00 34.64 3.74
4406 4582 2.021355 TGCAAAGCCACCAAAACAAG 57.979 45.000 0.00 0.00 0.00 3.16
4407 4583 2.079925 GTTGCAAAGCCACCAAAACAA 58.920 42.857 0.00 0.00 0.00 2.83
4409 4585 1.013596 GGTTGCAAAGCCACCAAAAC 58.986 50.000 0.00 0.00 42.87 2.43
4410 4586 3.467776 GGTTGCAAAGCCACCAAAA 57.532 47.368 0.00 0.00 42.87 2.44
4418 4594 0.600057 CTTGGAGAGGGTTGCAAAGC 59.400 55.000 0.00 0.00 45.23 3.51
4419 4595 1.251251 CCTTGGAGAGGGTTGCAAAG 58.749 55.000 0.00 0.00 42.26 2.77
4433 4609 0.385390 GCCCAATTGCGATACCTTGG 59.615 55.000 0.00 0.00 38.28 3.61
4443 4619 4.918583 CACAAAATTTGAATGCCCAATTGC 59.081 37.500 13.19 0.00 0.00 3.56
4451 4635 8.801715 TTAGAAGAGACACAAAATTTGAATGC 57.198 30.769 13.19 0.00 0.00 3.56
4470 4654 9.801873 TGATTTCAAAACCAAGTTCTTTAGAAG 57.198 29.630 0.00 0.00 34.27 2.85
4481 4665 4.244862 CCCCGAATGATTTCAAAACCAAG 58.755 43.478 0.00 0.00 0.00 3.61
4528 4712 1.238439 ACAACAGGAAATCCGCACTG 58.762 50.000 0.00 0.00 42.08 3.66
4533 4717 1.904287 TCCCAACAACAGGAAATCCG 58.096 50.000 0.00 0.00 42.08 4.18
4556 4740 1.712977 GCGAGCAGATCAAGGCCTTG 61.713 60.000 35.52 35.52 41.71 3.61
4583 4767 5.068987 CCTCCAAAGAACCAATGAAAGAACA 59.931 40.000 0.00 0.00 0.00 3.18
4636 4820 7.148018 ACCACAAAAGCATAAGATAGGTGATTG 60.148 37.037 0.00 0.00 0.00 2.67
4644 4828 5.935206 TCACGAACCACAAAAGCATAAGATA 59.065 36.000 0.00 0.00 0.00 1.98
4656 4840 1.990160 AAGGGGCTCACGAACCACAA 61.990 55.000 0.00 0.00 0.00 3.33
4684 4868 1.442769 CACCTGAAGAATGACCGGTG 58.557 55.000 14.63 0.00 36.36 4.94
4685 4869 0.324943 CCACCTGAAGAATGACCGGT 59.675 55.000 6.92 6.92 0.00 5.28
4692 4876 4.779993 GGAGGAATACCACCTGAAGAAT 57.220 45.455 0.00 0.00 42.41 2.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.