Multiple sequence alignment - TraesCS4B01G225200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G225200 chr4B 100.000 2799 0 0 1 2799 471777083 471774285 0.000000e+00 5169.0
1 TraesCS4B01G225200 chr4B 96.923 975 29 1 1824 2798 66111730 66112703 0.000000e+00 1633.0
2 TraesCS4B01G225200 chr4B 95.506 979 42 2 1823 2799 97077714 97078692 0.000000e+00 1563.0
3 TraesCS4B01G225200 chr4B 95.209 981 42 4 1821 2799 452881173 452882150 0.000000e+00 1546.0
4 TraesCS4B01G225200 chr3B 97.344 979 25 1 1822 2799 647256439 647255461 0.000000e+00 1663.0
5 TraesCS4B01G225200 chr3B 96.520 977 34 0 1823 2799 159443457 159442481 0.000000e+00 1616.0
6 TraesCS4B01G225200 chr3B 93.565 979 61 2 1823 2799 202533434 202532456 0.000000e+00 1458.0
7 TraesCS4B01G225200 chr3B 82.390 318 50 4 1010 1324 720183224 720182910 3.550000e-69 272.0
8 TraesCS4B01G225200 chr3B 81.905 315 54 2 1010 1324 720178210 720177899 2.140000e-66 263.0
9 TraesCS4B01G225200 chr3B 78.977 176 37 0 1513 1688 720182818 720182643 1.360000e-23 121.0
10 TraesCS4B01G225200 chrUn 93.456 978 62 2 1822 2797 319744619 319743642 0.000000e+00 1450.0
11 TraesCS4B01G225200 chrUn 93.354 978 63 2 1822 2797 7990635 7989658 0.000000e+00 1445.0
12 TraesCS4B01G225200 chrUn 90.374 187 17 1 99 284 393604428 393604614 7.740000e-61 244.0
13 TraesCS4B01G225200 chrUn 88.776 196 19 2 99 291 51393723 51393528 1.300000e-58 237.0
14 TraesCS4B01G225200 chrUn 88.776 196 19 2 99 291 278334992 278335187 1.300000e-58 237.0
15 TraesCS4B01G225200 chr1B 93.054 979 63 5 1822 2797 638315454 638314478 0.000000e+00 1426.0
16 TraesCS4B01G225200 chr1B 80.571 350 64 3 984 1330 349541404 349541752 1.650000e-67 267.0
17 TraesCS4B01G225200 chr4A 90.842 950 66 12 887 1826 66559496 66558558 0.000000e+00 1253.0
18 TraesCS4B01G225200 chr4A 82.174 230 24 5 340 567 66560858 66560644 6.160000e-42 182.0
19 TraesCS4B01G225200 chr4A 91.935 124 6 3 572 695 66559739 66559620 1.330000e-38 171.0
20 TraesCS4B01G225200 chr4A 87.069 116 9 4 738 853 66559608 66559499 2.930000e-25 126.0
21 TraesCS4B01G225200 chr4A 94.444 36 2 0 1347 1382 702299546 702299511 3.890000e-04 56.5
22 TraesCS4B01G225200 chr4D 86.133 1024 62 23 353 1339 384952085 384951105 0.000000e+00 1031.0
23 TraesCS4B01G225200 chr4D 97.250 400 10 1 1404 1803 384951035 384950637 0.000000e+00 676.0
24 TraesCS4B01G225200 chr4D 91.489 188 14 2 99 285 58982032 58981846 9.950000e-65 257.0
25 TraesCS4B01G225200 chr7A 81.503 346 55 6 986 1324 709825053 709825396 2.750000e-70 276.0
26 TraesCS4B01G225200 chr7A 78.852 331 70 0 996 1326 671219711 671219381 1.010000e-54 224.0
27 TraesCS4B01G225200 chr3D 82.484 314 52 2 1011 1324 544277947 544277637 3.550000e-69 272.0
28 TraesCS4B01G225200 chr3D 74.834 302 69 6 1398 1693 544346650 544346350 2.260000e-26 130.0
29 TraesCS4B01G225200 chr3D 80.120 166 30 3 1547 1711 544440060 544440223 1.360000e-23 121.0
30 TraesCS4B01G225200 chr3D 93.333 45 2 1 1347 1390 41211649 41211605 6.470000e-07 65.8
31 TraesCS4B01G225200 chr7D 90.722 194 16 2 99 292 37872551 37872360 9.950000e-65 257.0
32 TraesCS4B01G225200 chr1D 92.614 176 13 0 99 274 491721663 491721488 1.290000e-63 254.0
33 TraesCS4B01G225200 chr5D 92.571 175 13 0 99 273 552044575 552044749 4.630000e-63 252.0
34 TraesCS4B01G225200 chr3A 80.357 336 59 5 994 1326 681396044 681396375 5.990000e-62 248.0
35 TraesCS4B01G225200 chr3A 80.588 170 29 4 1547 1714 681396501 681396668 8.140000e-26 128.0
36 TraesCS4B01G225200 chr3A 79.720 143 29 0 1551 1693 681321788 681321646 1.370000e-18 104.0
37 TraesCS4B01G225200 chr2D 90.323 186 16 2 99 284 27080471 27080288 2.790000e-60 243.0
38 TraesCS4B01G225200 chr2B 89.947 189 17 2 99 285 74196944 74196756 2.790000e-60 243.0
39 TraesCS4B01G225200 chr1A 77.824 239 49 4 1535 1771 337654524 337654288 8.080000e-31 145.0
40 TraesCS4B01G225200 chr5B 97.368 38 1 0 1347 1384 487713938 487713975 6.470000e-07 65.8
41 TraesCS4B01G225200 chr5B 97.222 36 1 0 1347 1382 505145291 505145256 8.370000e-06 62.1
42 TraesCS4B01G225200 chr7B 91.304 46 4 0 1347 1392 674193741 674193786 2.330000e-06 63.9
43 TraesCS4B01G225200 chr6B 92.308 39 3 0 1347 1385 576017104 576017142 3.890000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G225200 chr4B 471774285 471777083 2798 True 5169.0 5169 100.0000 1 2799 1 chr4B.!!$R1 2798
1 TraesCS4B01G225200 chr4B 66111730 66112703 973 False 1633.0 1633 96.9230 1824 2798 1 chr4B.!!$F1 974
2 TraesCS4B01G225200 chr4B 97077714 97078692 978 False 1563.0 1563 95.5060 1823 2799 1 chr4B.!!$F2 976
3 TraesCS4B01G225200 chr4B 452881173 452882150 977 False 1546.0 1546 95.2090 1821 2799 1 chr4B.!!$F3 978
4 TraesCS4B01G225200 chr3B 647255461 647256439 978 True 1663.0 1663 97.3440 1822 2799 1 chr3B.!!$R3 977
5 TraesCS4B01G225200 chr3B 159442481 159443457 976 True 1616.0 1616 96.5200 1823 2799 1 chr3B.!!$R1 976
6 TraesCS4B01G225200 chr3B 202532456 202533434 978 True 1458.0 1458 93.5650 1823 2799 1 chr3B.!!$R2 976
7 TraesCS4B01G225200 chrUn 319743642 319744619 977 True 1450.0 1450 93.4560 1822 2797 1 chrUn.!!$R3 975
8 TraesCS4B01G225200 chrUn 7989658 7990635 977 True 1445.0 1445 93.3540 1822 2797 1 chrUn.!!$R1 975
9 TraesCS4B01G225200 chr1B 638314478 638315454 976 True 1426.0 1426 93.0540 1822 2797 1 chr1B.!!$R1 975
10 TraesCS4B01G225200 chr4A 66558558 66560858 2300 True 433.0 1253 88.0050 340 1826 4 chr4A.!!$R2 1486
11 TraesCS4B01G225200 chr4D 384950637 384952085 1448 True 853.5 1031 91.6915 353 1803 2 chr4D.!!$R2 1450

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
29 30 0.031616 GATGAGGGGGACAGAGGAGT 60.032 60.0 0.00 0.00 0.0 3.85 F
411 414 0.095245 CAGACGGCTTTACATGTGCG 59.905 55.0 9.11 3.12 0.0 5.34 F
417 420 0.240945 GCTTTACATGTGCGTGCCTT 59.759 50.0 9.11 0.00 0.0 4.35 F
725 1628 0.249280 GTTGGGCGGTGAAAAGGTTG 60.249 55.0 0.00 0.00 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1132 2071 0.621862 GGGTTGGACCTGAGGAGGAT 60.622 60.000 4.99 0.0 42.93 3.24 R
1367 2306 1.066716 TGGAAATACTCCCACCGTTCG 60.067 52.381 0.00 0.0 44.69 3.95 R
1402 2346 1.068588 AGCTGCATTAATAGACGCCGA 59.931 47.619 1.02 0.0 0.00 5.54 R
1985 2975 1.268352 CTCTAGGCGAAATCCTCCTCG 59.732 57.143 0.00 0.0 37.66 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.907458 AAAGGAACAAGATGAGGGGG 57.093 50.000 0.00 0.00 0.00 5.40
20 21 2.059756 AAGGAACAAGATGAGGGGGA 57.940 50.000 0.00 0.00 0.00 4.81
21 22 1.290134 AGGAACAAGATGAGGGGGAC 58.710 55.000 0.00 0.00 0.00 4.46
22 23 0.991920 GGAACAAGATGAGGGGGACA 59.008 55.000 0.00 0.00 0.00 4.02
23 24 1.065126 GGAACAAGATGAGGGGGACAG 60.065 57.143 0.00 0.00 0.00 3.51
24 25 1.909302 GAACAAGATGAGGGGGACAGA 59.091 52.381 0.00 0.00 0.00 3.41
25 26 1.577736 ACAAGATGAGGGGGACAGAG 58.422 55.000 0.00 0.00 0.00 3.35
26 27 0.835941 CAAGATGAGGGGGACAGAGG 59.164 60.000 0.00 0.00 0.00 3.69
27 28 0.719015 AAGATGAGGGGGACAGAGGA 59.281 55.000 0.00 0.00 0.00 3.71
28 29 0.264359 AGATGAGGGGGACAGAGGAG 59.736 60.000 0.00 0.00 0.00 3.69
29 30 0.031616 GATGAGGGGGACAGAGGAGT 60.032 60.000 0.00 0.00 0.00 3.85
30 31 0.326048 ATGAGGGGGACAGAGGAGTG 60.326 60.000 0.00 0.00 0.00 3.51
31 32 1.388531 GAGGGGGACAGAGGAGTGA 59.611 63.158 0.00 0.00 0.00 3.41
32 33 0.686112 GAGGGGGACAGAGGAGTGAG 60.686 65.000 0.00 0.00 0.00 3.51
33 34 1.149782 AGGGGGACAGAGGAGTGAGA 61.150 60.000 0.00 0.00 0.00 3.27
34 35 0.252284 GGGGGACAGAGGAGTGAGAA 60.252 60.000 0.00 0.00 0.00 2.87
35 36 1.645710 GGGGACAGAGGAGTGAGAAA 58.354 55.000 0.00 0.00 0.00 2.52
36 37 1.552792 GGGGACAGAGGAGTGAGAAAG 59.447 57.143 0.00 0.00 0.00 2.62
37 38 2.530701 GGGACAGAGGAGTGAGAAAGA 58.469 52.381 0.00 0.00 0.00 2.52
38 39 2.900546 GGGACAGAGGAGTGAGAAAGAA 59.099 50.000 0.00 0.00 0.00 2.52
39 40 3.325135 GGGACAGAGGAGTGAGAAAGAAA 59.675 47.826 0.00 0.00 0.00 2.52
40 41 4.019771 GGGACAGAGGAGTGAGAAAGAAAT 60.020 45.833 0.00 0.00 0.00 2.17
41 42 5.513962 GGGACAGAGGAGTGAGAAAGAAATT 60.514 44.000 0.00 0.00 0.00 1.82
42 43 5.411053 GGACAGAGGAGTGAGAAAGAAATTG 59.589 44.000 0.00 0.00 0.00 2.32
43 44 6.179906 ACAGAGGAGTGAGAAAGAAATTGA 57.820 37.500 0.00 0.00 0.00 2.57
44 45 6.229733 ACAGAGGAGTGAGAAAGAAATTGAG 58.770 40.000 0.00 0.00 0.00 3.02
45 46 5.642919 CAGAGGAGTGAGAAAGAAATTGAGG 59.357 44.000 0.00 0.00 0.00 3.86
46 47 4.331108 AGGAGTGAGAAAGAAATTGAGGC 58.669 43.478 0.00 0.00 0.00 4.70
47 48 3.126000 GGAGTGAGAAAGAAATTGAGGCG 59.874 47.826 0.00 0.00 0.00 5.52
48 49 3.744660 AGTGAGAAAGAAATTGAGGCGT 58.255 40.909 0.00 0.00 0.00 5.68
49 50 3.748568 AGTGAGAAAGAAATTGAGGCGTC 59.251 43.478 0.00 0.00 0.00 5.19
50 51 3.748568 GTGAGAAAGAAATTGAGGCGTCT 59.251 43.478 8.06 0.00 0.00 4.18
51 52 3.748048 TGAGAAAGAAATTGAGGCGTCTG 59.252 43.478 8.06 0.00 0.00 3.51
52 53 3.744660 AGAAAGAAATTGAGGCGTCTGT 58.255 40.909 8.06 0.00 0.00 3.41
53 54 3.499918 AGAAAGAAATTGAGGCGTCTGTG 59.500 43.478 8.06 0.00 0.00 3.66
54 55 1.813513 AGAAATTGAGGCGTCTGTGG 58.186 50.000 8.06 0.00 0.00 4.17
55 56 1.347707 AGAAATTGAGGCGTCTGTGGA 59.652 47.619 8.06 0.00 0.00 4.02
56 57 2.151202 GAAATTGAGGCGTCTGTGGAA 58.849 47.619 8.06 0.00 0.00 3.53
57 58 2.496899 AATTGAGGCGTCTGTGGAAT 57.503 45.000 8.06 0.00 0.00 3.01
58 59 3.627395 AATTGAGGCGTCTGTGGAATA 57.373 42.857 8.06 0.00 0.00 1.75
59 60 3.845781 ATTGAGGCGTCTGTGGAATAT 57.154 42.857 8.06 0.00 0.00 1.28
60 61 2.602257 TGAGGCGTCTGTGGAATATG 57.398 50.000 8.06 0.00 0.00 1.78
61 62 1.221414 GAGGCGTCTGTGGAATATGC 58.779 55.000 0.00 0.00 0.00 3.14
62 63 0.541392 AGGCGTCTGTGGAATATGCA 59.459 50.000 0.00 0.00 0.00 3.96
63 64 0.657840 GGCGTCTGTGGAATATGCAC 59.342 55.000 0.00 0.00 39.30 4.57
64 65 0.657840 GCGTCTGTGGAATATGCACC 59.342 55.000 0.00 0.00 37.97 5.01
65 66 0.930310 CGTCTGTGGAATATGCACCG 59.070 55.000 0.00 0.00 37.97 4.94
66 67 1.739035 CGTCTGTGGAATATGCACCGT 60.739 52.381 0.00 0.00 37.97 4.83
67 68 2.480587 CGTCTGTGGAATATGCACCGTA 60.481 50.000 0.00 0.00 37.97 4.02
68 69 3.527533 GTCTGTGGAATATGCACCGTAA 58.472 45.455 0.00 0.00 37.97 3.18
69 70 3.936453 GTCTGTGGAATATGCACCGTAAA 59.064 43.478 0.00 0.00 37.97 2.01
70 71 4.393680 GTCTGTGGAATATGCACCGTAAAA 59.606 41.667 0.00 0.00 37.97 1.52
71 72 5.004448 TCTGTGGAATATGCACCGTAAAAA 58.996 37.500 0.00 0.00 37.97 1.94
72 73 5.650266 TCTGTGGAATATGCACCGTAAAAAT 59.350 36.000 0.00 0.00 37.97 1.82
73 74 6.824196 TCTGTGGAATATGCACCGTAAAAATA 59.176 34.615 0.00 0.00 37.97 1.40
74 75 7.337184 TCTGTGGAATATGCACCGTAAAAATAA 59.663 33.333 0.00 0.00 37.97 1.40
75 76 7.827701 TGTGGAATATGCACCGTAAAAATAAA 58.172 30.769 0.00 0.00 37.97 1.40
76 77 8.470805 TGTGGAATATGCACCGTAAAAATAAAT 58.529 29.630 0.00 0.00 37.97 1.40
77 78 8.751335 GTGGAATATGCACCGTAAAAATAAATG 58.249 33.333 0.00 0.00 32.15 2.32
78 79 8.470805 TGGAATATGCACCGTAAAAATAAATGT 58.529 29.630 0.00 0.00 0.00 2.71
79 80 9.308318 GGAATATGCACCGTAAAAATAAATGTT 57.692 29.630 0.00 0.00 0.00 2.71
82 83 9.959749 ATATGCACCGTAAAAATAAATGTTAGG 57.040 29.630 0.00 0.00 0.00 2.69
83 84 7.216973 TGCACCGTAAAAATAAATGTTAGGT 57.783 32.000 0.00 0.00 0.00 3.08
84 85 8.332996 TGCACCGTAAAAATAAATGTTAGGTA 57.667 30.769 0.00 0.00 0.00 3.08
85 86 8.790718 TGCACCGTAAAAATAAATGTTAGGTAA 58.209 29.630 0.00 0.00 0.00 2.85
86 87 9.064804 GCACCGTAAAAATAAATGTTAGGTAAC 57.935 33.333 0.00 0.00 36.74 2.50
100 101 2.521105 GGTAACTCGGTGTCACAACT 57.479 50.000 5.12 0.00 0.00 3.16
101 102 3.648339 GGTAACTCGGTGTCACAACTA 57.352 47.619 5.12 0.00 0.00 2.24
102 103 4.184079 GGTAACTCGGTGTCACAACTAT 57.816 45.455 5.12 0.00 0.00 2.12
103 104 5.314923 GGTAACTCGGTGTCACAACTATA 57.685 43.478 5.12 0.00 0.00 1.31
104 105 5.713025 GGTAACTCGGTGTCACAACTATAA 58.287 41.667 5.12 0.00 0.00 0.98
105 106 5.574443 GGTAACTCGGTGTCACAACTATAAC 59.426 44.000 5.12 0.00 0.00 1.89
106 107 4.859304 ACTCGGTGTCACAACTATAACA 57.141 40.909 5.12 0.00 0.00 2.41
107 108 5.204409 ACTCGGTGTCACAACTATAACAA 57.796 39.130 5.12 0.00 0.00 2.83
108 109 5.227908 ACTCGGTGTCACAACTATAACAAG 58.772 41.667 5.12 0.00 0.00 3.16
109 110 4.562082 TCGGTGTCACAACTATAACAAGG 58.438 43.478 5.12 0.00 0.00 3.61
110 111 4.039488 TCGGTGTCACAACTATAACAAGGT 59.961 41.667 5.12 0.00 0.00 3.50
111 112 4.753107 CGGTGTCACAACTATAACAAGGTT 59.247 41.667 5.12 0.00 0.00 3.50
112 113 5.237779 CGGTGTCACAACTATAACAAGGTTT 59.762 40.000 5.12 0.00 0.00 3.27
113 114 6.435428 GGTGTCACAACTATAACAAGGTTTG 58.565 40.000 5.12 0.00 0.00 2.93
114 115 5.912955 GTGTCACAACTATAACAAGGTTTGC 59.087 40.000 0.00 0.00 0.00 3.68
115 116 5.009210 TGTCACAACTATAACAAGGTTTGCC 59.991 40.000 0.00 0.00 0.00 4.52
116 117 4.521256 TCACAACTATAACAAGGTTTGCCC 59.479 41.667 0.00 0.00 34.57 5.36
117 118 4.279671 CACAACTATAACAAGGTTTGCCCA 59.720 41.667 0.00 0.00 34.66 5.36
118 119 4.522789 ACAACTATAACAAGGTTTGCCCAG 59.477 41.667 0.00 0.00 34.66 4.45
119 120 3.089284 ACTATAACAAGGTTTGCCCAGC 58.911 45.455 0.00 0.00 34.66 4.85
120 121 2.309136 ATAACAAGGTTTGCCCAGCT 57.691 45.000 0.00 0.00 34.66 4.24
121 122 1.616159 TAACAAGGTTTGCCCAGCTC 58.384 50.000 0.00 0.00 34.66 4.09
122 123 1.455383 AACAAGGTTTGCCCAGCTCG 61.455 55.000 0.00 0.00 34.66 5.03
123 124 2.282462 AAGGTTTGCCCAGCTCGG 60.282 61.111 0.00 0.00 34.66 4.63
132 133 3.465403 CCAGCTCGGGTGAGGGAG 61.465 72.222 4.90 0.00 42.79 4.30
133 134 3.465403 CAGCTCGGGTGAGGGAGG 61.465 72.222 0.00 0.00 42.79 4.30
134 135 4.787280 AGCTCGGGTGAGGGAGGG 62.787 72.222 0.00 0.00 42.79 4.30
140 141 3.866582 GGTGAGGGAGGGGCGATG 61.867 72.222 0.00 0.00 0.00 3.84
141 142 2.764128 GTGAGGGAGGGGCGATGA 60.764 66.667 0.00 0.00 0.00 2.92
142 143 2.764128 TGAGGGAGGGGCGATGAC 60.764 66.667 0.00 0.00 0.00 3.06
143 144 2.764128 GAGGGAGGGGCGATGACA 60.764 66.667 0.00 0.00 0.00 3.58
144 145 2.765807 AGGGAGGGGCGATGACAG 60.766 66.667 0.00 0.00 0.00 3.51
145 146 4.554036 GGGAGGGGCGATGACAGC 62.554 72.222 0.00 0.00 0.00 4.40
146 147 4.899239 GGAGGGGCGATGACAGCG 62.899 72.222 9.11 9.11 35.00 5.18
147 148 4.899239 GAGGGGCGATGACAGCGG 62.899 72.222 15.74 0.00 35.00 5.52
166 167 3.195698 GCGCCTTCGGATCGCTTT 61.196 61.111 0.00 0.00 44.79 3.51
167 168 1.881252 GCGCCTTCGGATCGCTTTA 60.881 57.895 0.00 0.00 44.79 1.85
168 169 1.822250 GCGCCTTCGGATCGCTTTAG 61.822 60.000 0.00 0.00 44.79 1.85
169 170 0.527817 CGCCTTCGGATCGCTTTAGT 60.528 55.000 0.00 0.00 0.00 2.24
170 171 0.931005 GCCTTCGGATCGCTTTAGTG 59.069 55.000 0.00 0.00 0.00 2.74
171 172 1.739371 GCCTTCGGATCGCTTTAGTGT 60.739 52.381 0.00 0.00 0.00 3.55
172 173 2.618053 CCTTCGGATCGCTTTAGTGTT 58.382 47.619 0.00 0.00 0.00 3.32
173 174 3.000727 CCTTCGGATCGCTTTAGTGTTT 58.999 45.455 0.00 0.00 0.00 2.83
174 175 3.435671 CCTTCGGATCGCTTTAGTGTTTT 59.564 43.478 0.00 0.00 0.00 2.43
175 176 4.083484 CCTTCGGATCGCTTTAGTGTTTTT 60.083 41.667 0.00 0.00 0.00 1.94
176 177 5.121142 CCTTCGGATCGCTTTAGTGTTTTTA 59.879 40.000 0.00 0.00 0.00 1.52
177 178 5.773239 TCGGATCGCTTTAGTGTTTTTAG 57.227 39.130 0.00 0.00 0.00 1.85
178 179 5.232463 TCGGATCGCTTTAGTGTTTTTAGT 58.768 37.500 0.00 0.00 0.00 2.24
179 180 5.346822 TCGGATCGCTTTAGTGTTTTTAGTC 59.653 40.000 0.00 0.00 0.00 2.59
180 181 5.548250 GGATCGCTTTAGTGTTTTTAGTCG 58.452 41.667 0.00 0.00 0.00 4.18
181 182 5.119743 GGATCGCTTTAGTGTTTTTAGTCGT 59.880 40.000 0.00 0.00 0.00 4.34
182 183 5.565723 TCGCTTTAGTGTTTTTAGTCGTC 57.434 39.130 0.00 0.00 0.00 4.20
183 184 4.146961 TCGCTTTAGTGTTTTTAGTCGTCG 59.853 41.667 0.00 0.00 0.00 5.12
184 185 4.085415 CGCTTTAGTGTTTTTAGTCGTCGT 60.085 41.667 0.00 0.00 0.00 4.34
185 186 5.555069 CGCTTTAGTGTTTTTAGTCGTCGTT 60.555 40.000 0.00 0.00 0.00 3.85
186 187 6.344936 CGCTTTAGTGTTTTTAGTCGTCGTTA 60.345 38.462 0.00 0.00 0.00 3.18
187 188 7.000200 GCTTTAGTGTTTTTAGTCGTCGTTAG 59.000 38.462 0.00 0.00 0.00 2.34
188 189 6.991485 TTAGTGTTTTTAGTCGTCGTTAGG 57.009 37.500 0.00 0.00 0.00 2.69
189 190 4.936891 AGTGTTTTTAGTCGTCGTTAGGT 58.063 39.130 0.00 0.00 0.00 3.08
190 191 4.741676 AGTGTTTTTAGTCGTCGTTAGGTG 59.258 41.667 0.00 0.00 0.00 4.00
191 192 4.050553 TGTTTTTAGTCGTCGTTAGGTGG 58.949 43.478 0.00 0.00 0.00 4.61
192 193 4.051237 GTTTTTAGTCGTCGTTAGGTGGT 58.949 43.478 0.00 0.00 0.00 4.16
193 194 3.559238 TTTAGTCGTCGTTAGGTGGTC 57.441 47.619 0.00 0.00 0.00 4.02
194 195 2.479566 TAGTCGTCGTTAGGTGGTCT 57.520 50.000 0.00 0.00 0.00 3.85
195 196 2.479566 AGTCGTCGTTAGGTGGTCTA 57.520 50.000 0.00 0.00 0.00 2.59
196 197 2.079925 AGTCGTCGTTAGGTGGTCTAC 58.920 52.381 0.00 0.00 0.00 2.59
197 198 1.078709 TCGTCGTTAGGTGGTCTACG 58.921 55.000 0.00 0.00 0.00 3.51
198 199 0.097674 CGTCGTTAGGTGGTCTACGG 59.902 60.000 0.00 0.00 0.00 4.02
199 200 1.453155 GTCGTTAGGTGGTCTACGGA 58.547 55.000 0.00 0.00 0.00 4.69
200 201 2.019984 GTCGTTAGGTGGTCTACGGAT 58.980 52.381 0.00 0.00 0.00 4.18
201 202 2.032675 GTCGTTAGGTGGTCTACGGATC 59.967 54.545 0.00 0.00 0.00 3.36
202 203 2.092753 TCGTTAGGTGGTCTACGGATCT 60.093 50.000 0.00 0.00 0.00 2.75
203 204 2.033049 CGTTAGGTGGTCTACGGATCTG 59.967 54.545 0.00 0.00 0.00 2.90
204 205 2.359981 TAGGTGGTCTACGGATCTGG 57.640 55.000 6.47 0.00 0.00 3.86
205 206 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
206 207 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
207 208 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
208 209 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
209 210 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
210 211 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
211 212 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
212 213 4.899457 TGGTCTACGGATCTGGATGTAATT 59.101 41.667 6.47 0.00 0.00 1.40
213 214 5.365605 TGGTCTACGGATCTGGATGTAATTT 59.634 40.000 6.47 0.00 0.00 1.82
214 215 6.126883 TGGTCTACGGATCTGGATGTAATTTT 60.127 38.462 6.47 0.00 0.00 1.82
215 216 6.766467 GGTCTACGGATCTGGATGTAATTTTT 59.234 38.462 6.47 0.00 0.00 1.94
216 217 7.929785 GGTCTACGGATCTGGATGTAATTTTTA 59.070 37.037 6.47 0.00 0.00 1.52
217 218 9.490379 GTCTACGGATCTGGATGTAATTTTTAT 57.510 33.333 6.47 0.00 0.00 1.40
243 244 9.539825 TTATTTTTAGTGTTCGTTGTACTACCA 57.460 29.630 1.76 0.00 0.00 3.25
244 245 8.611654 ATTTTTAGTGTTCGTTGTACTACCAT 57.388 30.769 1.76 0.00 0.00 3.55
245 246 7.410800 TTTTAGTGTTCGTTGTACTACCATG 57.589 36.000 1.76 0.00 0.00 3.66
246 247 4.859304 AGTGTTCGTTGTACTACCATGA 57.141 40.909 0.00 0.00 0.00 3.07
247 248 5.401531 AGTGTTCGTTGTACTACCATGAT 57.598 39.130 0.00 0.00 0.00 2.45
248 249 5.790593 AGTGTTCGTTGTACTACCATGATT 58.209 37.500 0.00 0.00 0.00 2.57
249 250 6.927416 AGTGTTCGTTGTACTACCATGATTA 58.073 36.000 0.00 0.00 0.00 1.75
250 251 7.380536 AGTGTTCGTTGTACTACCATGATTAA 58.619 34.615 0.00 0.00 0.00 1.40
251 252 7.874016 AGTGTTCGTTGTACTACCATGATTAAA 59.126 33.333 0.00 0.00 0.00 1.52
252 253 8.166706 GTGTTCGTTGTACTACCATGATTAAAG 58.833 37.037 0.00 0.00 0.00 1.85
253 254 8.089597 TGTTCGTTGTACTACCATGATTAAAGA 58.910 33.333 0.00 0.00 0.00 2.52
254 255 9.095065 GTTCGTTGTACTACCATGATTAAAGAT 57.905 33.333 0.00 0.00 0.00 2.40
298 299 9.622004 TCTAAAAGAAAAGTGTATACTGTCTCG 57.378 33.333 4.17 0.00 37.19 4.04
299 300 9.408069 CTAAAAGAAAAGTGTATACTGTCTCGT 57.592 33.333 4.17 2.34 37.19 4.18
301 302 9.924650 AAAAGAAAAGTGTATACTGTCTCGTAT 57.075 29.630 4.17 0.00 37.19 3.06
309 310 9.557061 AGTGTATACTGTCTCGTATATTTCAGA 57.443 33.333 4.17 0.00 35.48 3.27
364 365 4.457603 ACCAATTTTCGTCGGATCATTTGA 59.542 37.500 0.00 0.00 0.00 2.69
367 368 6.020440 CCAATTTTCGTCGGATCATTTGATTG 60.020 38.462 0.00 0.00 34.37 2.67
377 380 2.720915 TCATTTGATTGGATCACGGCA 58.279 42.857 0.00 0.00 39.39 5.69
403 406 2.434185 CGCCTGCAGACGGCTTTA 60.434 61.111 17.39 0.00 45.37 1.85
411 414 0.095245 CAGACGGCTTTACATGTGCG 59.905 55.000 9.11 3.12 0.00 5.34
415 418 1.154035 GGCTTTACATGTGCGTGCC 60.154 57.895 9.11 12.74 0.00 5.01
416 419 1.586154 GGCTTTACATGTGCGTGCCT 61.586 55.000 19.63 0.00 36.32 4.75
417 420 0.240945 GCTTTACATGTGCGTGCCTT 59.759 50.000 9.11 0.00 0.00 4.35
418 421 1.335872 GCTTTACATGTGCGTGCCTTT 60.336 47.619 9.11 0.00 0.00 3.11
419 422 2.862140 GCTTTACATGTGCGTGCCTTTT 60.862 45.455 9.11 0.00 0.00 2.27
420 423 2.697431 TTACATGTGCGTGCCTTTTC 57.303 45.000 9.11 0.00 0.00 2.29
421 424 1.890876 TACATGTGCGTGCCTTTTCT 58.109 45.000 9.11 0.00 0.00 2.52
422 425 1.032014 ACATGTGCGTGCCTTTTCTT 58.968 45.000 0.00 0.00 0.00 2.52
423 426 1.408702 ACATGTGCGTGCCTTTTCTTT 59.591 42.857 0.00 0.00 0.00 2.52
424 427 2.159114 ACATGTGCGTGCCTTTTCTTTT 60.159 40.909 0.00 0.00 0.00 2.27
482 485 0.334676 AAAATGGCTCCCGATTCCCA 59.665 50.000 0.00 0.00 0.00 4.37
484 487 1.999634 AATGGCTCCCGATTCCCAGG 62.000 60.000 0.00 0.00 0.00 4.45
494 497 2.105821 CCGATTCCCAGGGCAATTACTA 59.894 50.000 0.00 0.00 0.00 1.82
646 1549 7.938140 AATATTAGGAAGCAAGCAAACACTA 57.062 32.000 0.00 0.00 0.00 2.74
647 1550 5.886960 ATTAGGAAGCAAGCAAACACTAG 57.113 39.130 0.00 0.00 0.00 2.57
648 1551 3.214696 AGGAAGCAAGCAAACACTAGT 57.785 42.857 0.00 0.00 0.00 2.57
671 1574 8.171164 AGTATCATCGAGTCATTGACTGATTA 57.829 34.615 23.57 16.21 43.53 1.75
678 1581 6.366061 TCGAGTCATTGACTGATTAACAACAG 59.634 38.462 23.57 0.00 43.53 3.16
682 1585 7.667219 AGTCATTGACTGATTAACAACAGGAAT 59.333 33.333 18.35 0.00 41.76 3.01
709 1612 2.819115 AGCACTATCATCTCAGCGTTG 58.181 47.619 0.00 0.00 0.00 4.10
710 1613 1.863454 GCACTATCATCTCAGCGTTGG 59.137 52.381 0.00 0.00 0.00 3.77
712 1615 1.202580 ACTATCATCTCAGCGTTGGGC 60.203 52.381 0.00 0.00 44.05 5.36
721 1624 2.050442 GCGTTGGGCGGTGAAAAG 60.050 61.111 0.00 0.00 41.69 2.27
722 1625 2.642700 CGTTGGGCGGTGAAAAGG 59.357 61.111 0.00 0.00 36.85 3.11
723 1626 2.190841 CGTTGGGCGGTGAAAAGGT 61.191 57.895 0.00 0.00 36.85 3.50
724 1627 1.730451 CGTTGGGCGGTGAAAAGGTT 61.730 55.000 0.00 0.00 36.85 3.50
725 1628 0.249280 GTTGGGCGGTGAAAAGGTTG 60.249 55.000 0.00 0.00 0.00 3.77
726 1629 0.395862 TTGGGCGGTGAAAAGGTTGA 60.396 50.000 0.00 0.00 0.00 3.18
727 1630 1.104577 TGGGCGGTGAAAAGGTTGAC 61.105 55.000 0.00 0.00 0.00 3.18
728 1631 1.658114 GGCGGTGAAAAGGTTGACC 59.342 57.895 0.00 0.00 37.63 4.02
748 1651 6.022958 TGACCTGGCCAGCTATTATAATCTA 58.977 40.000 28.39 0.00 0.00 1.98
752 1655 7.017651 ACCTGGCCAGCTATTATAATCTAGTTT 59.982 37.037 28.39 0.00 0.00 2.66
827 1730 5.344743 AAGCATTCGAAAGATCTCTACCA 57.655 39.130 0.00 0.00 41.60 3.25
828 1731 4.942852 AGCATTCGAAAGATCTCTACCAG 58.057 43.478 0.00 0.00 41.60 4.00
849 1752 6.707161 ACCAGTATTAAAAACAAGCGTACTCA 59.293 34.615 0.00 0.00 0.00 3.41
853 1756 8.234546 AGTATTAAAAACAAGCGTACTCAATGG 58.765 33.333 0.00 0.00 0.00 3.16
854 1757 4.911514 AAAAACAAGCGTACTCAATGGT 57.088 36.364 0.00 0.00 0.00 3.55
858 1761 4.911514 ACAAGCGTACTCAATGGTTTTT 57.088 36.364 0.00 0.00 32.48 1.94
862 1765 6.430000 ACAAGCGTACTCAATGGTTTTTAGAT 59.570 34.615 0.00 0.00 32.48 1.98
898 1801 4.332828 ACCAAGTAAATAGGTTGGCTGAC 58.667 43.478 0.18 0.00 43.99 3.51
903 1806 3.560636 AAATAGGTTGGCTGACGCTAT 57.439 42.857 0.00 0.00 36.09 2.97
980 1885 3.518705 ACATCACTGAGAGAGCAAGGAAT 59.481 43.478 0.00 0.00 0.00 3.01
989 1928 4.473444 AGAGAGCAAGGAATAGAGAGAGG 58.527 47.826 0.00 0.00 0.00 3.69
990 1929 2.965147 AGAGCAAGGAATAGAGAGAGGC 59.035 50.000 0.00 0.00 0.00 4.70
1003 1942 1.073923 AGAGAGGCGGGAAAACAATGT 59.926 47.619 0.00 0.00 0.00 2.71
1113 2052 3.192422 GCTATGAGTACATCGAGCAGGAT 59.808 47.826 0.00 0.00 37.76 3.24
1206 2145 1.817099 CAAGCCCATCAGCGAGTCC 60.817 63.158 0.00 0.00 38.01 3.85
1333 2272 3.678662 GTCGACGACAAGGTATGTACTC 58.321 50.000 22.66 0.00 44.12 2.59
1339 2278 6.579666 ACGACAAGGTATGTACTCTGTTTA 57.420 37.500 0.00 0.00 44.12 2.01
1340 2279 6.618811 ACGACAAGGTATGTACTCTGTTTAG 58.381 40.000 0.00 0.00 44.12 1.85
1341 2280 6.034591 CGACAAGGTATGTACTCTGTTTAGG 58.965 44.000 0.00 0.00 44.12 2.69
1342 2281 6.127814 CGACAAGGTATGTACTCTGTTTAGGA 60.128 42.308 0.00 0.00 44.12 2.94
1343 2282 7.171630 ACAAGGTATGTACTCTGTTTAGGAG 57.828 40.000 0.00 0.00 41.63 3.69
1344 2283 6.724905 ACAAGGTATGTACTCTGTTTAGGAGT 59.275 38.462 0.00 0.00 41.63 3.85
1345 2284 7.892241 ACAAGGTATGTACTCTGTTTAGGAGTA 59.108 37.037 0.00 0.00 41.63 2.59
1373 2312 8.716619 TTTTTATGACAAGTAATTTCGAACGG 57.283 30.769 0.00 0.00 0.00 4.44
1374 2313 7.424227 TTTATGACAAGTAATTTCGAACGGT 57.576 32.000 0.00 0.00 0.00 4.83
1375 2314 4.718858 TGACAAGTAATTTCGAACGGTG 57.281 40.909 0.00 0.00 0.00 4.94
1376 2315 3.495377 TGACAAGTAATTTCGAACGGTGG 59.505 43.478 0.00 0.00 0.00 4.61
1377 2316 2.809696 ACAAGTAATTTCGAACGGTGGG 59.190 45.455 0.00 0.00 0.00 4.61
1378 2317 3.068560 CAAGTAATTTCGAACGGTGGGA 58.931 45.455 0.00 0.00 0.00 4.37
1379 2318 2.968675 AGTAATTTCGAACGGTGGGAG 58.031 47.619 0.00 0.00 0.00 4.30
1399 2343 4.384647 GGAGTATTTCCAATCACCAGAGCT 60.385 45.833 0.00 0.00 46.01 4.09
1400 2344 5.184892 AGTATTTCCAATCACCAGAGCTT 57.815 39.130 0.00 0.00 0.00 3.74
1401 2345 5.189180 AGTATTTCCAATCACCAGAGCTTC 58.811 41.667 0.00 0.00 0.00 3.86
1402 2346 3.795688 TTTCCAATCACCAGAGCTTCT 57.204 42.857 0.00 0.00 0.00 2.85
1411 2399 1.377366 CCAGAGCTTCTCGGCGTCTA 61.377 60.000 6.85 0.00 35.36 2.59
1414 2402 2.290916 CAGAGCTTCTCGGCGTCTATTA 59.709 50.000 6.85 0.00 35.36 0.98
1415 2403 2.950309 AGAGCTTCTCGGCGTCTATTAA 59.050 45.455 6.85 0.00 35.36 1.40
1509 2497 3.890674 GCTTGTGGGGTTAGCGAG 58.109 61.111 0.00 0.00 0.00 5.03
1533 2521 0.035915 GAAGAGGCCTTCACCCAGTC 60.036 60.000 6.77 0.00 46.18 3.51
1811 2799 4.023980 TGCCAAGTAGAGTAGCAGTGTAT 58.976 43.478 0.00 0.00 0.00 2.29
1813 2801 4.737946 GCCAAGTAGAGTAGCAGTGTATGG 60.738 50.000 0.00 0.00 0.00 2.74
1817 2805 6.607004 AGTAGAGTAGCAGTGTATGGTTTT 57.393 37.500 0.00 0.00 40.89 2.43
1818 2806 6.631962 AGTAGAGTAGCAGTGTATGGTTTTC 58.368 40.000 0.00 0.00 40.89 2.29
1819 2807 4.833390 AGAGTAGCAGTGTATGGTTTTCC 58.167 43.478 0.00 0.00 40.89 3.13
1820 2808 3.939592 GAGTAGCAGTGTATGGTTTTCCC 59.060 47.826 0.00 0.00 40.89 3.97
1928 2917 3.354948 TCAGCCACATAAGAAGTGCAT 57.645 42.857 0.00 0.00 35.69 3.96
1936 2925 6.260936 GCCACATAAGAAGTGCATATACAAGT 59.739 38.462 0.00 0.00 35.69 3.16
1985 2975 0.674895 CAAGCACCAGCCAGACTACC 60.675 60.000 0.00 0.00 43.56 3.18
2006 2996 2.588620 GAGGAGGATTTCGCCTAGAGA 58.411 52.381 0.00 0.00 45.98 3.10
2051 3041 7.657354 CCGTAGAATTCATTCTGGATAACATGA 59.343 37.037 8.44 0.00 46.01 3.07
2060 3050 7.552330 TCATTCTGGATAACATGACATCGAAAA 59.448 33.333 0.00 0.00 0.00 2.29
2214 3204 2.440796 CAACGCAGCCCATCCCAT 60.441 61.111 0.00 0.00 0.00 4.00
2234 3224 5.280727 CCCATGAAGAAAACCCTCTTAGACT 60.281 44.000 0.00 0.00 35.76 3.24
2307 3297 1.974236 CCAATTAACCCCAAGCCAACA 59.026 47.619 0.00 0.00 0.00 3.33
2343 3333 4.381932 CCATGTGAATTTAGCCAAGGAACC 60.382 45.833 0.00 0.00 0.00 3.62
2769 3760 0.617820 AACAGAGTCGGGTAGGCCAT 60.618 55.000 5.01 0.00 36.17 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.041755 GTCCCCCTCATCTTGTTCCTTT 59.958 50.000 0.00 0.00 0.00 3.11
1 2 1.636003 GTCCCCCTCATCTTGTTCCTT 59.364 52.381 0.00 0.00 0.00 3.36
2 3 1.290134 GTCCCCCTCATCTTGTTCCT 58.710 55.000 0.00 0.00 0.00 3.36
3 4 0.991920 TGTCCCCCTCATCTTGTTCC 59.008 55.000 0.00 0.00 0.00 3.62
4 5 1.909302 TCTGTCCCCCTCATCTTGTTC 59.091 52.381 0.00 0.00 0.00 3.18
5 6 1.912043 CTCTGTCCCCCTCATCTTGTT 59.088 52.381 0.00 0.00 0.00 2.83
6 7 1.577736 CTCTGTCCCCCTCATCTTGT 58.422 55.000 0.00 0.00 0.00 3.16
7 8 0.835941 CCTCTGTCCCCCTCATCTTG 59.164 60.000 0.00 0.00 0.00 3.02
8 9 0.719015 TCCTCTGTCCCCCTCATCTT 59.281 55.000 0.00 0.00 0.00 2.40
9 10 0.264359 CTCCTCTGTCCCCCTCATCT 59.736 60.000 0.00 0.00 0.00 2.90
10 11 0.031616 ACTCCTCTGTCCCCCTCATC 60.032 60.000 0.00 0.00 0.00 2.92
11 12 0.326048 CACTCCTCTGTCCCCCTCAT 60.326 60.000 0.00 0.00 0.00 2.90
12 13 1.079256 CACTCCTCTGTCCCCCTCA 59.921 63.158 0.00 0.00 0.00 3.86
13 14 0.686112 CTCACTCCTCTGTCCCCCTC 60.686 65.000 0.00 0.00 0.00 4.30
14 15 1.149782 TCTCACTCCTCTGTCCCCCT 61.150 60.000 0.00 0.00 0.00 4.79
15 16 0.252284 TTCTCACTCCTCTGTCCCCC 60.252 60.000 0.00 0.00 0.00 5.40
16 17 1.552792 CTTTCTCACTCCTCTGTCCCC 59.447 57.143 0.00 0.00 0.00 4.81
17 18 2.530701 TCTTTCTCACTCCTCTGTCCC 58.469 52.381 0.00 0.00 0.00 4.46
18 19 4.608948 TTTCTTTCTCACTCCTCTGTCC 57.391 45.455 0.00 0.00 0.00 4.02
19 20 6.226787 TCAATTTCTTTCTCACTCCTCTGTC 58.773 40.000 0.00 0.00 0.00 3.51
20 21 6.179906 TCAATTTCTTTCTCACTCCTCTGT 57.820 37.500 0.00 0.00 0.00 3.41
21 22 5.642919 CCTCAATTTCTTTCTCACTCCTCTG 59.357 44.000 0.00 0.00 0.00 3.35
22 23 5.802821 GCCTCAATTTCTTTCTCACTCCTCT 60.803 44.000 0.00 0.00 0.00 3.69
23 24 4.394610 GCCTCAATTTCTTTCTCACTCCTC 59.605 45.833 0.00 0.00 0.00 3.71
24 25 4.331108 GCCTCAATTTCTTTCTCACTCCT 58.669 43.478 0.00 0.00 0.00 3.69
25 26 3.126000 CGCCTCAATTTCTTTCTCACTCC 59.874 47.826 0.00 0.00 0.00 3.85
26 27 3.748568 ACGCCTCAATTTCTTTCTCACTC 59.251 43.478 0.00 0.00 0.00 3.51
27 28 3.744660 ACGCCTCAATTTCTTTCTCACT 58.255 40.909 0.00 0.00 0.00 3.41
28 29 3.748568 AGACGCCTCAATTTCTTTCTCAC 59.251 43.478 0.00 0.00 0.00 3.51
29 30 3.748048 CAGACGCCTCAATTTCTTTCTCA 59.252 43.478 0.00 0.00 0.00 3.27
30 31 3.748568 ACAGACGCCTCAATTTCTTTCTC 59.251 43.478 0.00 0.00 0.00 2.87
31 32 3.499918 CACAGACGCCTCAATTTCTTTCT 59.500 43.478 0.00 0.00 0.00 2.52
32 33 3.365364 CCACAGACGCCTCAATTTCTTTC 60.365 47.826 0.00 0.00 0.00 2.62
33 34 2.554032 CCACAGACGCCTCAATTTCTTT 59.446 45.455 0.00 0.00 0.00 2.52
34 35 2.154462 CCACAGACGCCTCAATTTCTT 58.846 47.619 0.00 0.00 0.00 2.52
35 36 1.347707 TCCACAGACGCCTCAATTTCT 59.652 47.619 0.00 0.00 0.00 2.52
36 37 1.808411 TCCACAGACGCCTCAATTTC 58.192 50.000 0.00 0.00 0.00 2.17
37 38 2.270352 TTCCACAGACGCCTCAATTT 57.730 45.000 0.00 0.00 0.00 1.82
38 39 2.496899 ATTCCACAGACGCCTCAATT 57.503 45.000 0.00 0.00 0.00 2.32
39 40 3.470709 CATATTCCACAGACGCCTCAAT 58.529 45.455 0.00 0.00 0.00 2.57
40 41 2.905075 CATATTCCACAGACGCCTCAA 58.095 47.619 0.00 0.00 0.00 3.02
41 42 1.473257 GCATATTCCACAGACGCCTCA 60.473 52.381 0.00 0.00 0.00 3.86
42 43 1.221414 GCATATTCCACAGACGCCTC 58.779 55.000 0.00 0.00 0.00 4.70
43 44 0.541392 TGCATATTCCACAGACGCCT 59.459 50.000 0.00 0.00 0.00 5.52
44 45 0.657840 GTGCATATTCCACAGACGCC 59.342 55.000 0.00 0.00 33.50 5.68
45 46 0.657840 GGTGCATATTCCACAGACGC 59.342 55.000 0.00 0.00 34.94 5.19
46 47 0.930310 CGGTGCATATTCCACAGACG 59.070 55.000 0.00 0.00 34.94 4.18
47 48 2.024176 ACGGTGCATATTCCACAGAC 57.976 50.000 9.41 0.00 34.94 3.51
48 49 3.897141 TTACGGTGCATATTCCACAGA 57.103 42.857 9.41 0.00 34.94 3.41
49 50 4.955925 TTTTACGGTGCATATTCCACAG 57.044 40.909 0.00 4.40 34.94 3.66
50 51 5.906113 ATTTTTACGGTGCATATTCCACA 57.094 34.783 0.00 0.00 34.94 4.17
51 52 8.751335 CATTTATTTTTACGGTGCATATTCCAC 58.249 33.333 0.00 0.00 0.00 4.02
52 53 8.470805 ACATTTATTTTTACGGTGCATATTCCA 58.529 29.630 0.00 0.00 0.00 3.53
53 54 8.865590 ACATTTATTTTTACGGTGCATATTCC 57.134 30.769 0.00 0.00 0.00 3.01
56 57 9.959749 CCTAACATTTATTTTTACGGTGCATAT 57.040 29.630 0.00 0.00 0.00 1.78
57 58 8.958506 ACCTAACATTTATTTTTACGGTGCATA 58.041 29.630 0.00 0.00 0.00 3.14
58 59 7.832769 ACCTAACATTTATTTTTACGGTGCAT 58.167 30.769 0.00 0.00 0.00 3.96
59 60 7.216973 ACCTAACATTTATTTTTACGGTGCA 57.783 32.000 0.00 0.00 0.00 4.57
60 61 9.064804 GTTACCTAACATTTATTTTTACGGTGC 57.935 33.333 0.00 0.00 36.25 5.01
63 64 9.693157 CGAGTTACCTAACATTTATTTTTACGG 57.307 33.333 0.00 0.00 38.62 4.02
64 65 9.693157 CCGAGTTACCTAACATTTATTTTTACG 57.307 33.333 0.00 0.00 38.62 3.18
67 68 9.070179 ACACCGAGTTACCTAACATTTATTTTT 57.930 29.630 0.00 0.00 38.62 1.94
68 69 8.625786 ACACCGAGTTACCTAACATTTATTTT 57.374 30.769 0.00 0.00 38.62 1.82
69 70 7.879160 TGACACCGAGTTACCTAACATTTATTT 59.121 33.333 0.00 0.00 38.62 1.40
70 71 7.332678 GTGACACCGAGTTACCTAACATTTATT 59.667 37.037 0.00 0.00 38.62 1.40
71 72 6.815142 GTGACACCGAGTTACCTAACATTTAT 59.185 38.462 0.00 0.00 38.62 1.40
72 73 6.158598 GTGACACCGAGTTACCTAACATTTA 58.841 40.000 0.00 0.00 38.62 1.40
73 74 4.992951 GTGACACCGAGTTACCTAACATTT 59.007 41.667 0.00 0.00 38.62 2.32
74 75 4.039488 TGTGACACCGAGTTACCTAACATT 59.961 41.667 2.45 0.00 38.62 2.71
75 76 3.575256 TGTGACACCGAGTTACCTAACAT 59.425 43.478 2.45 0.00 38.62 2.71
76 77 2.957680 TGTGACACCGAGTTACCTAACA 59.042 45.455 2.45 0.00 38.62 2.41
77 78 3.648339 TGTGACACCGAGTTACCTAAC 57.352 47.619 2.45 0.00 35.98 2.34
78 79 3.638160 AGTTGTGACACCGAGTTACCTAA 59.362 43.478 2.45 0.00 35.98 2.69
79 80 3.225104 AGTTGTGACACCGAGTTACCTA 58.775 45.455 2.45 0.00 35.98 3.08
80 81 2.037144 AGTTGTGACACCGAGTTACCT 58.963 47.619 2.45 0.00 35.98 3.08
81 82 2.521105 AGTTGTGACACCGAGTTACC 57.479 50.000 2.45 0.00 35.98 2.85
82 83 6.151691 TGTTATAGTTGTGACACCGAGTTAC 58.848 40.000 2.45 0.00 37.26 2.50
83 84 6.330004 TGTTATAGTTGTGACACCGAGTTA 57.670 37.500 2.45 0.00 0.00 2.24
84 85 5.204409 TGTTATAGTTGTGACACCGAGTT 57.796 39.130 2.45 0.00 0.00 3.01
85 86 4.859304 TGTTATAGTTGTGACACCGAGT 57.141 40.909 2.45 0.00 0.00 4.18
86 87 4.625742 CCTTGTTATAGTTGTGACACCGAG 59.374 45.833 2.45 0.00 0.00 4.63
87 88 4.039488 ACCTTGTTATAGTTGTGACACCGA 59.961 41.667 2.45 0.00 0.00 4.69
88 89 4.312443 ACCTTGTTATAGTTGTGACACCG 58.688 43.478 2.45 0.00 0.00 4.94
89 90 6.435428 CAAACCTTGTTATAGTTGTGACACC 58.565 40.000 2.45 0.00 0.00 4.16
90 91 5.912955 GCAAACCTTGTTATAGTTGTGACAC 59.087 40.000 0.00 0.00 0.00 3.67
91 92 5.009210 GGCAAACCTTGTTATAGTTGTGACA 59.991 40.000 0.00 0.00 0.00 3.58
92 93 5.458015 GGCAAACCTTGTTATAGTTGTGAC 58.542 41.667 0.00 0.00 0.00 3.67
93 94 4.521256 GGGCAAACCTTGTTATAGTTGTGA 59.479 41.667 0.00 0.00 35.85 3.58
94 95 4.279671 TGGGCAAACCTTGTTATAGTTGTG 59.720 41.667 0.00 0.00 41.11 3.33
95 96 4.475345 TGGGCAAACCTTGTTATAGTTGT 58.525 39.130 0.00 0.00 41.11 3.32
96 97 4.618227 GCTGGGCAAACCTTGTTATAGTTG 60.618 45.833 0.00 0.00 41.11 3.16
97 98 3.509967 GCTGGGCAAACCTTGTTATAGTT 59.490 43.478 0.00 0.00 41.11 2.24
98 99 3.089284 GCTGGGCAAACCTTGTTATAGT 58.911 45.455 0.00 0.00 41.11 2.12
99 100 3.356290 AGCTGGGCAAACCTTGTTATAG 58.644 45.455 0.00 0.00 41.11 1.31
100 101 3.352648 GAGCTGGGCAAACCTTGTTATA 58.647 45.455 0.00 0.00 41.11 0.98
101 102 2.171003 GAGCTGGGCAAACCTTGTTAT 58.829 47.619 0.00 0.00 41.11 1.89
102 103 1.616159 GAGCTGGGCAAACCTTGTTA 58.384 50.000 0.00 0.00 41.11 2.41
103 104 1.455383 CGAGCTGGGCAAACCTTGTT 61.455 55.000 0.00 0.00 41.11 2.83
104 105 1.898574 CGAGCTGGGCAAACCTTGT 60.899 57.895 0.00 0.00 41.11 3.16
105 106 2.629656 CCGAGCTGGGCAAACCTTG 61.630 63.158 0.21 0.00 41.11 3.61
106 107 2.282462 CCGAGCTGGGCAAACCTT 60.282 61.111 0.21 0.00 41.11 3.50
115 116 3.465403 CTCCCTCACCCGAGCTGG 61.465 72.222 0.00 0.00 38.00 4.85
116 117 3.465403 CCTCCCTCACCCGAGCTG 61.465 72.222 0.00 0.00 38.00 4.24
117 118 4.787280 CCCTCCCTCACCCGAGCT 62.787 72.222 0.00 0.00 38.00 4.09
123 124 3.866582 CATCGCCCCTCCCTCACC 61.867 72.222 0.00 0.00 0.00 4.02
124 125 2.764128 TCATCGCCCCTCCCTCAC 60.764 66.667 0.00 0.00 0.00 3.51
125 126 2.764128 GTCATCGCCCCTCCCTCA 60.764 66.667 0.00 0.00 0.00 3.86
126 127 2.764128 TGTCATCGCCCCTCCCTC 60.764 66.667 0.00 0.00 0.00 4.30
127 128 2.765807 CTGTCATCGCCCCTCCCT 60.766 66.667 0.00 0.00 0.00 4.20
128 129 4.554036 GCTGTCATCGCCCCTCCC 62.554 72.222 0.00 0.00 0.00 4.30
129 130 4.899239 CGCTGTCATCGCCCCTCC 62.899 72.222 0.00 0.00 0.00 4.30
130 131 4.899239 CCGCTGTCATCGCCCCTC 62.899 72.222 0.00 0.00 0.00 4.30
153 154 4.663636 AAAACACTAAAGCGATCCGAAG 57.336 40.909 0.00 0.00 0.00 3.79
154 155 5.697633 ACTAAAAACACTAAAGCGATCCGAA 59.302 36.000 0.00 0.00 0.00 4.30
155 156 5.232463 ACTAAAAACACTAAAGCGATCCGA 58.768 37.500 0.00 0.00 0.00 4.55
156 157 5.526010 ACTAAAAACACTAAAGCGATCCG 57.474 39.130 0.00 0.00 0.00 4.18
157 158 5.119743 ACGACTAAAAACACTAAAGCGATCC 59.880 40.000 0.00 0.00 0.00 3.36
158 159 6.149504 ACGACTAAAAACACTAAAGCGATC 57.850 37.500 0.00 0.00 0.00 3.69
159 160 5.164119 CGACGACTAAAAACACTAAAGCGAT 60.164 40.000 0.00 0.00 0.00 4.58
160 161 4.146961 CGACGACTAAAAACACTAAAGCGA 59.853 41.667 0.00 0.00 0.00 4.93
161 162 4.085415 ACGACGACTAAAAACACTAAAGCG 60.085 41.667 0.00 0.00 0.00 4.68
162 163 5.320607 ACGACGACTAAAAACACTAAAGC 57.679 39.130 0.00 0.00 0.00 3.51
163 164 7.168135 ACCTAACGACGACTAAAAACACTAAAG 59.832 37.037 0.00 0.00 0.00 1.85
164 165 6.978080 ACCTAACGACGACTAAAAACACTAAA 59.022 34.615 0.00 0.00 0.00 1.85
165 166 6.417635 CACCTAACGACGACTAAAAACACTAA 59.582 38.462 0.00 0.00 0.00 2.24
166 167 5.914635 CACCTAACGACGACTAAAAACACTA 59.085 40.000 0.00 0.00 0.00 2.74
167 168 4.741676 CACCTAACGACGACTAAAAACACT 59.258 41.667 0.00 0.00 0.00 3.55
168 169 4.084900 CCACCTAACGACGACTAAAAACAC 60.085 45.833 0.00 0.00 0.00 3.32
169 170 4.050553 CCACCTAACGACGACTAAAAACA 58.949 43.478 0.00 0.00 0.00 2.83
170 171 4.051237 ACCACCTAACGACGACTAAAAAC 58.949 43.478 0.00 0.00 0.00 2.43
171 172 4.037923 AGACCACCTAACGACGACTAAAAA 59.962 41.667 0.00 0.00 0.00 1.94
172 173 3.569701 AGACCACCTAACGACGACTAAAA 59.430 43.478 0.00 0.00 0.00 1.52
173 174 3.149196 AGACCACCTAACGACGACTAAA 58.851 45.455 0.00 0.00 0.00 1.85
174 175 2.783135 AGACCACCTAACGACGACTAA 58.217 47.619 0.00 0.00 0.00 2.24
175 176 2.479566 AGACCACCTAACGACGACTA 57.520 50.000 0.00 0.00 0.00 2.59
176 177 2.079925 GTAGACCACCTAACGACGACT 58.920 52.381 0.00 0.00 0.00 4.18
177 178 1.201965 CGTAGACCACCTAACGACGAC 60.202 57.143 0.00 0.00 35.43 4.34
178 179 1.078709 CGTAGACCACCTAACGACGA 58.921 55.000 0.00 0.00 35.43 4.20
179 180 0.097674 CCGTAGACCACCTAACGACG 59.902 60.000 0.00 0.00 33.84 5.12
180 181 1.453155 TCCGTAGACCACCTAACGAC 58.547 55.000 0.00 0.00 0.00 4.34
181 182 2.092753 AGATCCGTAGACCACCTAACGA 60.093 50.000 0.00 0.00 0.00 3.85
182 183 2.033049 CAGATCCGTAGACCACCTAACG 59.967 54.545 0.00 0.00 0.00 3.18
183 184 2.361438 CCAGATCCGTAGACCACCTAAC 59.639 54.545 0.00 0.00 0.00 2.34
184 185 2.242965 TCCAGATCCGTAGACCACCTAA 59.757 50.000 0.00 0.00 0.00 2.69
185 186 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
186 187 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
187 188 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
188 189 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
189 190 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
190 191 5.470047 AATTACATCCAGATCCGTAGACC 57.530 43.478 0.00 0.00 0.00 3.85
191 192 7.787725 AAAAATTACATCCAGATCCGTAGAC 57.212 36.000 0.00 0.00 0.00 2.59
217 218 9.539825 TGGTAGTACAACGAACACTAAAAATAA 57.460 29.630 2.06 0.00 0.00 1.40
218 219 9.709495 ATGGTAGTACAACGAACACTAAAAATA 57.291 29.630 2.06 0.00 0.00 1.40
219 220 8.500773 CATGGTAGTACAACGAACACTAAAAAT 58.499 33.333 2.06 0.00 0.00 1.82
220 221 7.710044 TCATGGTAGTACAACGAACACTAAAAA 59.290 33.333 2.06 0.00 0.00 1.94
221 222 7.208777 TCATGGTAGTACAACGAACACTAAAA 58.791 34.615 2.06 0.00 0.00 1.52
222 223 6.747125 TCATGGTAGTACAACGAACACTAAA 58.253 36.000 2.06 0.00 0.00 1.85
223 224 6.330004 TCATGGTAGTACAACGAACACTAA 57.670 37.500 2.06 0.00 0.00 2.24
224 225 5.963176 TCATGGTAGTACAACGAACACTA 57.037 39.130 2.06 0.00 0.00 2.74
225 226 4.859304 TCATGGTAGTACAACGAACACT 57.141 40.909 2.06 0.00 0.00 3.55
226 227 7.585286 TTAATCATGGTAGTACAACGAACAC 57.415 36.000 2.06 0.00 0.00 3.32
227 228 8.089597 TCTTTAATCATGGTAGTACAACGAACA 58.910 33.333 2.06 0.00 0.00 3.18
228 229 8.470040 TCTTTAATCATGGTAGTACAACGAAC 57.530 34.615 2.06 0.00 0.00 3.95
272 273 9.622004 CGAGACAGTATACACTTTTCTTTTAGA 57.378 33.333 5.50 0.00 30.46 2.10
273 274 9.408069 ACGAGACAGTATACACTTTTCTTTTAG 57.592 33.333 5.50 0.00 30.46 1.85
275 276 9.924650 ATACGAGACAGTATACACTTTTCTTTT 57.075 29.630 5.50 0.00 35.72 2.27
283 284 9.557061 TCTGAAATATACGAGACAGTATACACT 57.443 33.333 5.50 1.46 40.91 3.55
317 318 9.586435 GGTTGGTTGAAAAATAGATCCAAATAG 57.414 33.333 0.00 0.00 35.68 1.73
318 319 9.094578 TGGTTGGTTGAAAAATAGATCCAAATA 57.905 29.630 0.00 0.00 35.68 1.40
319 320 7.972301 TGGTTGGTTGAAAAATAGATCCAAAT 58.028 30.769 0.00 0.00 35.68 2.32
320 321 7.366847 TGGTTGGTTGAAAAATAGATCCAAA 57.633 32.000 0.00 0.00 35.68 3.28
321 322 6.985653 TGGTTGGTTGAAAAATAGATCCAA 57.014 33.333 0.00 0.00 0.00 3.53
322 323 6.985653 TTGGTTGGTTGAAAAATAGATCCA 57.014 33.333 0.00 0.00 0.00 3.41
323 324 8.846943 AAATTGGTTGGTTGAAAAATAGATCC 57.153 30.769 0.00 0.00 0.00 3.36
325 326 8.987890 CGAAAATTGGTTGGTTGAAAAATAGAT 58.012 29.630 0.00 0.00 0.00 1.98
326 327 7.982354 ACGAAAATTGGTTGGTTGAAAAATAGA 59.018 29.630 0.00 0.00 0.00 1.98
327 328 8.137210 ACGAAAATTGGTTGGTTGAAAAATAG 57.863 30.769 0.00 0.00 0.00 1.73
328 329 7.043325 CGACGAAAATTGGTTGGTTGAAAAATA 60.043 33.333 0.00 0.00 0.00 1.40
329 330 6.237969 CGACGAAAATTGGTTGGTTGAAAAAT 60.238 34.615 0.00 0.00 0.00 1.82
330 331 5.062308 CGACGAAAATTGGTTGGTTGAAAAA 59.938 36.000 0.00 0.00 0.00 1.94
331 332 4.563184 CGACGAAAATTGGTTGGTTGAAAA 59.437 37.500 0.00 0.00 0.00 2.29
332 333 4.106197 CGACGAAAATTGGTTGGTTGAAA 58.894 39.130 0.00 0.00 0.00 2.69
333 334 3.489398 CCGACGAAAATTGGTTGGTTGAA 60.489 43.478 0.00 0.00 36.15 2.69
334 335 2.033550 CCGACGAAAATTGGTTGGTTGA 59.966 45.455 0.00 0.00 36.15 3.18
335 336 2.033550 TCCGACGAAAATTGGTTGGTTG 59.966 45.455 12.58 0.02 40.28 3.77
336 337 2.299521 TCCGACGAAAATTGGTTGGTT 58.700 42.857 12.58 0.00 40.28 3.67
337 338 1.970092 TCCGACGAAAATTGGTTGGT 58.030 45.000 12.58 0.00 40.28 3.67
338 339 2.486203 TGATCCGACGAAAATTGGTTGG 59.514 45.455 7.96 7.96 40.62 3.77
342 343 4.980590 TCAAATGATCCGACGAAAATTGG 58.019 39.130 0.00 0.00 0.00 3.16
350 351 3.809279 TGATCCAATCAAATGATCCGACG 59.191 43.478 0.00 0.00 36.11 5.12
364 365 1.210234 TGATCTGTGCCGTGATCCAAT 59.790 47.619 0.00 0.00 38.53 3.16
367 368 1.009829 GTTGATCTGTGCCGTGATCC 58.990 55.000 0.00 0.00 38.53 3.36
377 380 0.671781 GTCTGCAGGCGTTGATCTGT 60.672 55.000 15.13 0.00 33.81 3.41
399 402 2.704725 AAAGGCACGCACATGTAAAG 57.295 45.000 0.00 0.00 0.00 1.85
403 406 1.032014 AAGAAAAGGCACGCACATGT 58.968 45.000 0.00 0.00 0.00 3.21
482 485 1.270147 GCCGATCGTAGTAATTGCCCT 60.270 52.381 15.09 0.00 0.00 5.19
484 487 2.150397 AGCCGATCGTAGTAATTGCC 57.850 50.000 15.09 0.00 0.00 4.52
494 497 0.315568 GCTCAGGATAAGCCGATCGT 59.684 55.000 15.09 0.00 43.43 3.73
581 585 6.228995 TGATGCTGGAGATCAGATACATTTC 58.771 40.000 0.00 0.00 46.18 2.17
646 1549 6.647334 ATCAGTCAATGACTCGATGATACT 57.353 37.500 13.72 0.00 41.37 2.12
647 1550 8.695284 GTTAATCAGTCAATGACTCGATGATAC 58.305 37.037 13.72 13.12 41.37 2.24
648 1551 8.413229 TGTTAATCAGTCAATGACTCGATGATA 58.587 33.333 13.72 7.70 41.37 2.15
671 1574 2.694628 TGCTTGCTTGATTCCTGTTGTT 59.305 40.909 0.00 0.00 0.00 2.83
678 1581 4.820716 AGATGATAGTGCTTGCTTGATTCC 59.179 41.667 0.00 0.00 0.00 3.01
682 1585 4.439968 CTGAGATGATAGTGCTTGCTTGA 58.560 43.478 0.00 0.00 0.00 3.02
709 1612 1.658114 GTCAACCTTTTCACCGCCC 59.342 57.895 0.00 0.00 0.00 6.13
710 1613 0.822121 AGGTCAACCTTTTCACCGCC 60.822 55.000 0.00 0.00 46.09 6.13
712 1615 0.951558 CCAGGTCAACCTTTTCACCG 59.048 55.000 0.00 0.00 46.09 4.94
713 1616 0.673985 GCCAGGTCAACCTTTTCACC 59.326 55.000 0.00 0.00 46.09 4.02
714 1617 0.673985 GGCCAGGTCAACCTTTTCAC 59.326 55.000 0.00 0.00 46.09 3.18
715 1618 0.260230 TGGCCAGGTCAACCTTTTCA 59.740 50.000 0.00 0.00 46.09 2.69
716 1619 0.961753 CTGGCCAGGTCAACCTTTTC 59.038 55.000 26.14 0.00 46.09 2.29
717 1620 1.115326 GCTGGCCAGGTCAACCTTTT 61.115 55.000 33.46 0.00 46.09 2.27
718 1621 1.531602 GCTGGCCAGGTCAACCTTT 60.532 57.895 33.46 0.00 46.09 3.11
719 1622 1.133809 TAGCTGGCCAGGTCAACCTT 61.134 55.000 39.28 11.00 46.09 3.50
721 1624 0.034089 AATAGCTGGCCAGGTCAACC 60.034 55.000 39.28 18.78 40.09 3.77
722 1625 2.710096 TAATAGCTGGCCAGGTCAAC 57.290 50.000 39.28 19.55 40.09 3.18
723 1626 5.310594 AGATTATAATAGCTGGCCAGGTCAA 59.689 40.000 39.28 24.60 40.09 3.18
724 1627 4.846367 AGATTATAATAGCTGGCCAGGTCA 59.154 41.667 39.28 25.38 40.09 4.02
725 1628 5.428184 AGATTATAATAGCTGGCCAGGTC 57.572 43.478 39.28 22.40 40.09 3.85
726 1629 6.026186 ACTAGATTATAATAGCTGGCCAGGT 58.974 40.000 37.43 37.43 42.47 4.00
727 1630 6.552445 ACTAGATTATAATAGCTGGCCAGG 57.448 41.667 33.46 15.81 0.00 4.45
728 1631 8.097038 TCAAACTAGATTATAATAGCTGGCCAG 58.903 37.037 29.34 29.34 0.00 4.85
729 1632 7.973402 TCAAACTAGATTATAATAGCTGGCCA 58.027 34.615 4.71 4.71 0.00 5.36
730 1633 8.887717 CATCAAACTAGATTATAATAGCTGGCC 58.112 37.037 0.00 0.00 0.00 5.36
731 1634 8.394121 GCATCAAACTAGATTATAATAGCTGGC 58.606 37.037 0.00 0.00 0.00 4.85
732 1635 9.664332 AGCATCAAACTAGATTATAATAGCTGG 57.336 33.333 0.00 0.00 0.00 4.85
734 1637 9.160496 GCAGCATCAAACTAGATTATAATAGCT 57.840 33.333 0.00 0.00 0.00 3.32
820 1723 7.360575 ACGCTTGTTTTTAATACTGGTAGAG 57.639 36.000 0.00 0.00 0.00 2.43
821 1724 8.090214 AGTACGCTTGTTTTTAATACTGGTAGA 58.910 33.333 0.00 0.00 0.00 2.59
822 1725 8.248117 AGTACGCTTGTTTTTAATACTGGTAG 57.752 34.615 0.00 0.00 0.00 3.18
823 1726 7.871973 TGAGTACGCTTGTTTTTAATACTGGTA 59.128 33.333 0.00 0.00 0.00 3.25
827 1730 8.234546 CCATTGAGTACGCTTGTTTTTAATACT 58.765 33.333 0.00 0.00 0.00 2.12
828 1731 8.019094 ACCATTGAGTACGCTTGTTTTTAATAC 58.981 33.333 0.00 0.00 0.00 1.89
838 1741 6.236017 TCTAAAAACCATTGAGTACGCTTG 57.764 37.500 0.00 0.00 0.00 4.01
840 1743 7.277981 CACTATCTAAAAACCATTGAGTACGCT 59.722 37.037 0.00 0.00 0.00 5.07
869 1772 6.826741 GCCAACCTATTTACTTGGTCAGATTA 59.173 38.462 0.00 0.00 37.38 1.75
874 1777 4.042311 TCAGCCAACCTATTTACTTGGTCA 59.958 41.667 0.00 0.00 37.38 4.02
882 1785 4.682778 ATAGCGTCAGCCAACCTATTTA 57.317 40.909 0.00 0.00 46.67 1.40
883 1786 3.560636 ATAGCGTCAGCCAACCTATTT 57.439 42.857 0.00 0.00 46.67 1.40
885 1788 5.624738 GCTTATATAGCGTCAGCCAACCTAT 60.625 44.000 0.00 0.00 46.67 2.57
980 1885 1.933021 TGTTTTCCCGCCTCTCTCTA 58.067 50.000 0.00 0.00 0.00 2.43
989 1928 1.200020 CTCCTGACATTGTTTTCCCGC 59.800 52.381 0.00 0.00 0.00 6.13
990 1929 2.778299 TCTCCTGACATTGTTTTCCCG 58.222 47.619 0.00 0.00 0.00 5.14
1003 1942 2.499289 GCTTGATGTCTCCTTCTCCTGA 59.501 50.000 0.00 0.00 0.00 3.86
1074 2013 2.401766 GCTCACGCCCTTCATGTGG 61.402 63.158 0.00 0.00 34.43 4.17
1132 2071 0.621862 GGGTTGGACCTGAGGAGGAT 60.622 60.000 4.99 0.00 42.93 3.24
1206 2145 2.945315 GTACTGCACGATGACGAGG 58.055 57.895 0.00 0.00 42.66 4.63
1287 2226 2.669569 GCCCAGAAGCGAGCAACA 60.670 61.111 0.00 0.00 0.00 3.33
1347 2286 9.337091 CCGTTCGAAATTACTTGTCATAAAAAT 57.663 29.630 0.00 0.00 0.00 1.82
1348 2287 8.344098 ACCGTTCGAAATTACTTGTCATAAAAA 58.656 29.630 0.00 0.00 0.00 1.94
1349 2288 7.799447 CACCGTTCGAAATTACTTGTCATAAAA 59.201 33.333 0.00 0.00 0.00 1.52
1350 2289 7.292292 CACCGTTCGAAATTACTTGTCATAAA 58.708 34.615 0.00 0.00 0.00 1.40
1351 2290 6.128499 CCACCGTTCGAAATTACTTGTCATAA 60.128 38.462 0.00 0.00 0.00 1.90
1352 2291 5.349270 CCACCGTTCGAAATTACTTGTCATA 59.651 40.000 0.00 0.00 0.00 2.15
1353 2292 4.153475 CCACCGTTCGAAATTACTTGTCAT 59.847 41.667 0.00 0.00 0.00 3.06
1354 2293 3.495377 CCACCGTTCGAAATTACTTGTCA 59.505 43.478 0.00 0.00 0.00 3.58
1355 2294 3.120442 CCCACCGTTCGAAATTACTTGTC 60.120 47.826 0.00 0.00 0.00 3.18
1356 2295 2.809696 CCCACCGTTCGAAATTACTTGT 59.190 45.455 0.00 0.00 0.00 3.16
1357 2296 3.068560 TCCCACCGTTCGAAATTACTTG 58.931 45.455 0.00 0.00 0.00 3.16
1358 2297 3.244318 ACTCCCACCGTTCGAAATTACTT 60.244 43.478 0.00 0.00 0.00 2.24
1359 2298 2.301009 ACTCCCACCGTTCGAAATTACT 59.699 45.455 0.00 0.00 0.00 2.24
1360 2299 2.691927 ACTCCCACCGTTCGAAATTAC 58.308 47.619 0.00 0.00 0.00 1.89
1361 2300 4.741321 ATACTCCCACCGTTCGAAATTA 57.259 40.909 0.00 0.00 0.00 1.40
1362 2301 3.622166 ATACTCCCACCGTTCGAAATT 57.378 42.857 0.00 0.00 0.00 1.82
1363 2302 3.622166 AATACTCCCACCGTTCGAAAT 57.378 42.857 0.00 0.00 0.00 2.17
1364 2303 3.328505 GAAATACTCCCACCGTTCGAAA 58.671 45.455 0.00 0.00 0.00 3.46
1365 2304 2.354003 GGAAATACTCCCACCGTTCGAA 60.354 50.000 0.00 0.00 38.44 3.71
1366 2305 1.205417 GGAAATACTCCCACCGTTCGA 59.795 52.381 0.00 0.00 38.44 3.71
1367 2306 1.066716 TGGAAATACTCCCACCGTTCG 60.067 52.381 0.00 0.00 44.69 3.95
1368 2307 2.773993 TGGAAATACTCCCACCGTTC 57.226 50.000 0.00 0.00 44.69 3.95
1369 2308 3.009695 TGATTGGAAATACTCCCACCGTT 59.990 43.478 0.00 0.00 44.69 4.44
1370 2309 2.574369 TGATTGGAAATACTCCCACCGT 59.426 45.455 0.00 0.00 44.69 4.83
1371 2310 2.943033 GTGATTGGAAATACTCCCACCG 59.057 50.000 0.00 0.00 44.69 4.94
1372 2311 3.288092 GGTGATTGGAAATACTCCCACC 58.712 50.000 0.00 0.00 44.69 4.61
1373 2312 3.947834 CTGGTGATTGGAAATACTCCCAC 59.052 47.826 0.00 0.00 44.69 4.61
1374 2313 3.849574 TCTGGTGATTGGAAATACTCCCA 59.150 43.478 0.00 0.00 44.69 4.37
1375 2314 4.455606 CTCTGGTGATTGGAAATACTCCC 58.544 47.826 0.00 0.00 44.69 4.30
1376 2315 3.879892 GCTCTGGTGATTGGAAATACTCC 59.120 47.826 0.00 0.00 45.64 3.85
1377 2316 4.775236 AGCTCTGGTGATTGGAAATACTC 58.225 43.478 0.00 0.00 0.00 2.59
1378 2317 4.851639 AGCTCTGGTGATTGGAAATACT 57.148 40.909 0.00 0.00 0.00 2.12
1379 2318 5.189180 AGAAGCTCTGGTGATTGGAAATAC 58.811 41.667 0.00 0.00 0.00 1.89
1389 2333 2.973899 GCCGAGAAGCTCTGGTGA 59.026 61.111 0.00 0.00 30.83 4.02
1399 2343 3.381045 CTGCATTAATAGACGCCGAGAA 58.619 45.455 0.00 0.00 0.00 2.87
1400 2344 2.862530 GCTGCATTAATAGACGCCGAGA 60.863 50.000 0.00 0.00 0.00 4.04
1401 2345 1.457303 GCTGCATTAATAGACGCCGAG 59.543 52.381 0.00 0.00 0.00 4.63
1402 2346 1.068588 AGCTGCATTAATAGACGCCGA 59.931 47.619 1.02 0.00 0.00 5.54
1411 2399 1.753073 GCAGGGAACAGCTGCATTAAT 59.247 47.619 15.27 0.00 41.98 1.40
1414 2402 3.690745 GCAGGGAACAGCTGCATT 58.309 55.556 15.27 0.36 41.98 3.56
1526 2514 1.425448 CTTCCCTTTTGAGGACTGGGT 59.575 52.381 0.00 0.00 38.95 4.51
1928 2917 6.533730 CCAATTAGGCTGGATGACTTGTATA 58.466 40.000 0.00 0.00 35.85 1.47
1985 2975 1.268352 CTCTAGGCGAAATCCTCCTCG 59.732 57.143 0.00 0.00 37.66 4.63
2006 2996 2.985456 GTCTACCCTGCTGCAGCT 59.015 61.111 36.61 20.81 42.66 4.24
2051 3041 3.118371 GGGGATCTACAGGTTTTCGATGT 60.118 47.826 0.00 0.00 0.00 3.06
2060 3050 2.897823 AAGGATGGGGATCTACAGGT 57.102 50.000 0.00 0.00 0.00 4.00
2127 3117 2.543635 TCCCTACTAACCCTGTCAACC 58.456 52.381 0.00 0.00 0.00 3.77
2214 3204 4.505039 GCCAGTCTAAGAGGGTTTTCTTCA 60.505 45.833 0.00 0.00 38.35 3.02
2234 3224 2.398588 CATCAACTCCCTAGTAGGCCA 58.601 52.381 11.08 0.00 33.75 5.36
2343 3333 4.393062 ACACTGAGCATATCTTTTTCCACG 59.607 41.667 0.00 0.00 0.00 4.94
2498 3489 8.531146 CATGGATAAGTTTAAGTCCATTTGGTT 58.469 33.333 3.14 0.00 46.50 3.67
2769 3760 2.358615 GTGACACCATGCTGGCGA 60.359 61.111 0.00 0.00 42.67 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.