Multiple sequence alignment - TraesCS4B01G224400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G224400 chr4B 100.000 3953 0 0 1 3953 469250011 469246059 0.000000e+00 7300
1 TraesCS4B01G224400 chr4D 95.299 3382 116 15 560 3922 381901221 381897864 0.000000e+00 5325
2 TraesCS4B01G224400 chr4D 92.568 148 10 1 152 299 381901517 381901371 1.110000e-50 211
3 TraesCS4B01G224400 chr4D 90.728 151 8 2 3804 3953 381897919 381897774 3.120000e-46 196
4 TraesCS4B01G224400 chr4D 88.608 158 15 2 2 159 381902449 381902295 5.210000e-44 189
5 TraesCS4B01G224400 chr4A 94.334 3424 116 30 570 3951 81763189 81766576 0.000000e+00 5177


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G224400 chr4B 469246059 469250011 3952 True 7300.00 7300 100.00000 1 3953 1 chr4B.!!$R1 3952
1 TraesCS4B01G224400 chr4D 381897774 381902449 4675 True 1480.25 5325 91.80075 2 3953 4 chr4D.!!$R1 3951
2 TraesCS4B01G224400 chr4A 81763189 81766576 3387 False 5177.00 5177 94.33400 570 3951 1 chr4A.!!$F1 3381

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
51 52 0.033503 TAGCTCACATCTGGGGACGA 60.034 55.0 0.00 0.0 0.00 4.20 F
179 965 0.042188 CGTTGTCGTGCAAAGTCCAG 60.042 55.0 0.00 0.0 39.03 3.86 F
348 1160 0.108329 AGTAGGTGTTTCGATGCCCG 60.108 55.0 0.00 0.0 40.25 6.13 F
833 1647 0.170116 GTCACTGACAGAGAGGCTCG 59.830 60.0 10.08 0.0 35.36 5.03 F
2340 3183 0.181587 TCTTGCAACAAGTCCGGGAA 59.818 50.0 0.00 0.0 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1758 2601 2.206750 TCCGTATATTCAAACCTGCGC 58.793 47.619 0.00 0.00 0.00 6.09 R
2136 2979 2.882677 ATGACCTGAGTGCACGGCA 61.883 57.895 12.01 12.91 35.60 5.69 R
2340 3183 0.114168 AGACCACCTCTGCTCTGAGT 59.886 55.000 6.53 0.00 32.50 3.41 R
2528 3371 3.669536 TGATCTAAATGGTGCGACACAA 58.330 40.909 11.20 1.48 35.86 3.33 R
3265 4113 1.396648 TGATGTAGTGCGCCAAATTCG 59.603 47.619 4.18 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 0.033503 TAGCTCACATCTGGGGACGA 60.034 55.000 0.00 0.00 0.00 4.20
78 79 2.358737 CCAGAGGTTGGTGGTCGC 60.359 66.667 0.00 0.00 42.41 5.19
80 81 4.003788 AGAGGTTGGTGGTCGCGG 62.004 66.667 6.13 0.00 0.00 6.46
179 965 0.042188 CGTTGTCGTGCAAAGTCCAG 60.042 55.000 0.00 0.00 39.03 3.86
227 1013 1.470632 CCAGAGACGATGGACTGAAGC 60.471 57.143 0.00 0.00 40.51 3.86
243 1029 4.393062 ACTGAAGCGAAGGTACAATTCATG 59.607 41.667 9.82 0.00 37.06 3.07
278 1064 4.218635 ACGTGTGAAATCAAGAGAGCTAGA 59.781 41.667 0.00 0.00 0.00 2.43
280 1066 4.867608 GTGTGAAATCAAGAGAGCTAGACC 59.132 45.833 0.00 0.00 0.00 3.85
281 1067 4.081420 TGTGAAATCAAGAGAGCTAGACCC 60.081 45.833 0.00 0.00 0.00 4.46
324 1136 3.950397 ACTTGGGTGAATTTAGCATCGA 58.050 40.909 1.64 0.00 0.00 3.59
334 1146 5.294306 TGAATTTAGCATCGAAGCAAGTAGG 59.706 40.000 15.84 0.00 36.85 3.18
348 1160 0.108329 AGTAGGTGTTTCGATGCCCG 60.108 55.000 0.00 0.00 40.25 6.13
349 1161 1.448893 TAGGTGTTTCGATGCCCGC 60.449 57.895 0.00 0.00 38.37 6.13
359 1171 1.476085 TCGATGCCCGCAAATTTTCAT 59.524 42.857 0.00 0.00 38.37 2.57
360 1172 2.685388 TCGATGCCCGCAAATTTTCATA 59.315 40.909 0.00 0.00 38.37 2.15
363 1175 3.176552 TGCCCGCAAATTTTCATATGG 57.823 42.857 2.13 0.00 0.00 2.74
365 1177 2.741228 GCCCGCAAATTTTCATATGGCA 60.741 45.455 2.13 0.00 36.40 4.92
366 1178 2.865551 CCCGCAAATTTTCATATGGCAC 59.134 45.455 2.13 0.00 0.00 5.01
367 1179 2.865551 CCGCAAATTTTCATATGGCACC 59.134 45.455 2.13 0.00 0.00 5.01
369 1181 2.284952 GCAAATTTTCATATGGCACCGC 59.715 45.455 2.13 0.00 0.00 5.68
380 1192 4.424566 GCACCGCCTGCACAATGG 62.425 66.667 0.00 0.00 46.29 3.16
381 1193 3.751246 CACCGCCTGCACAATGGG 61.751 66.667 0.00 0.00 0.00 4.00
397 1209 2.079170 TGGGGCATCTGTGTCAAAAA 57.921 45.000 0.00 0.00 0.00 1.94
423 1235 0.902048 TGGCATCGATTTTGGCCCAA 60.902 50.000 18.76 0.00 45.83 4.12
424 1236 0.179103 GGCATCGATTTTGGCCCAAG 60.179 55.000 12.35 0.00 40.55 3.61
443 1255 3.553109 GCCTTAGGCCGAGTTCTTT 57.447 52.632 13.12 0.00 44.06 2.52
444 1256 1.822506 GCCTTAGGCCGAGTTCTTTT 58.177 50.000 13.12 0.00 44.06 2.27
445 1257 1.468914 GCCTTAGGCCGAGTTCTTTTG 59.531 52.381 13.12 0.00 44.06 2.44
446 1258 2.084546 CCTTAGGCCGAGTTCTTTTGG 58.915 52.381 0.00 0.00 0.00 3.28
447 1259 2.084546 CTTAGGCCGAGTTCTTTTGGG 58.915 52.381 0.00 0.00 0.00 4.12
448 1260 0.322187 TAGGCCGAGTTCTTTTGGGC 60.322 55.000 0.00 0.00 45.32 5.36
449 1261 2.561373 GCCGAGTTCTTTTGGGCG 59.439 61.111 0.00 0.00 33.58 6.13
450 1262 1.964373 GCCGAGTTCTTTTGGGCGA 60.964 57.895 0.00 0.00 33.58 5.54
451 1263 1.305930 GCCGAGTTCTTTTGGGCGAT 61.306 55.000 0.00 0.00 33.58 4.58
452 1264 1.165270 CCGAGTTCTTTTGGGCGATT 58.835 50.000 0.00 0.00 0.00 3.34
453 1265 1.130561 CCGAGTTCTTTTGGGCGATTC 59.869 52.381 0.00 0.00 0.00 2.52
454 1266 1.804151 CGAGTTCTTTTGGGCGATTCA 59.196 47.619 0.00 0.00 0.00 2.57
455 1267 2.420022 CGAGTTCTTTTGGGCGATTCAT 59.580 45.455 0.00 0.00 0.00 2.57
456 1268 3.485877 CGAGTTCTTTTGGGCGATTCATC 60.486 47.826 0.00 0.00 0.00 2.92
457 1269 2.755103 AGTTCTTTTGGGCGATTCATCC 59.245 45.455 0.00 0.00 0.00 3.51
458 1270 2.491693 GTTCTTTTGGGCGATTCATCCA 59.508 45.455 0.00 0.00 0.00 3.41
459 1271 2.368439 TCTTTTGGGCGATTCATCCAG 58.632 47.619 0.00 0.00 31.59 3.86
460 1272 2.026356 TCTTTTGGGCGATTCATCCAGA 60.026 45.455 0.00 0.00 31.59 3.86
461 1273 2.505650 TTTGGGCGATTCATCCAGAA 57.494 45.000 0.00 0.00 41.28 3.02
474 1286 5.859205 TCATCCAGAATCTTGAGAATCGA 57.141 39.130 0.00 0.00 38.61 3.59
475 1287 5.595885 TCATCCAGAATCTTGAGAATCGAC 58.404 41.667 0.00 0.00 38.61 4.20
476 1288 5.362143 TCATCCAGAATCTTGAGAATCGACT 59.638 40.000 0.00 0.00 38.61 4.18
477 1289 5.255710 TCCAGAATCTTGAGAATCGACTC 57.744 43.478 0.00 0.00 38.61 3.36
478 1290 4.952957 TCCAGAATCTTGAGAATCGACTCT 59.047 41.667 0.00 0.00 38.61 3.24
479 1291 5.420421 TCCAGAATCTTGAGAATCGACTCTT 59.580 40.000 0.00 0.00 38.61 2.85
480 1292 5.748152 CCAGAATCTTGAGAATCGACTCTTC 59.252 44.000 0.00 0.00 38.61 2.87
481 1293 6.328714 CAGAATCTTGAGAATCGACTCTTCA 58.671 40.000 0.00 0.00 38.61 3.02
482 1294 6.253298 CAGAATCTTGAGAATCGACTCTTCAC 59.747 42.308 0.00 0.00 38.61 3.18
483 1295 4.442375 TCTTGAGAATCGACTCTTCACC 57.558 45.455 0.00 0.00 38.61 4.02
484 1296 3.193691 TCTTGAGAATCGACTCTTCACCC 59.806 47.826 0.00 0.00 38.61 4.61
485 1297 2.525368 TGAGAATCGACTCTTCACCCA 58.475 47.619 0.00 0.00 38.61 4.51
486 1298 2.493675 TGAGAATCGACTCTTCACCCAG 59.506 50.000 0.00 0.00 38.61 4.45
487 1299 1.205893 AGAATCGACTCTTCACCCAGC 59.794 52.381 0.00 0.00 0.00 4.85
488 1300 1.205893 GAATCGACTCTTCACCCAGCT 59.794 52.381 0.00 0.00 0.00 4.24
489 1301 1.270907 ATCGACTCTTCACCCAGCTT 58.729 50.000 0.00 0.00 0.00 3.74
490 1302 0.603569 TCGACTCTTCACCCAGCTTC 59.396 55.000 0.00 0.00 0.00 3.86
491 1303 0.605589 CGACTCTTCACCCAGCTTCT 59.394 55.000 0.00 0.00 0.00 2.85
492 1304 1.403514 CGACTCTTCACCCAGCTTCTC 60.404 57.143 0.00 0.00 0.00 2.87
493 1305 0.980423 ACTCTTCACCCAGCTTCTCC 59.020 55.000 0.00 0.00 0.00 3.71
494 1306 0.979665 CTCTTCACCCAGCTTCTCCA 59.020 55.000 0.00 0.00 0.00 3.86
495 1307 1.349026 CTCTTCACCCAGCTTCTCCAA 59.651 52.381 0.00 0.00 0.00 3.53
496 1308 1.349026 TCTTCACCCAGCTTCTCCAAG 59.651 52.381 0.00 0.00 0.00 3.61
504 1316 4.730487 CTTCTCCAAGCTGGGTGG 57.270 61.111 7.13 1.00 38.32 4.61
505 1317 2.069776 CTTCTCCAAGCTGGGTGGA 58.930 57.895 7.13 6.21 43.03 4.02
506 1318 0.401738 CTTCTCCAAGCTGGGTGGAA 59.598 55.000 7.13 11.83 44.55 3.53
507 1319 0.401738 TTCTCCAAGCTGGGTGGAAG 59.598 55.000 7.13 0.00 44.55 3.46
508 1320 1.001641 CTCCAAGCTGGGTGGAAGG 60.002 63.158 7.13 0.00 44.55 3.46
509 1321 1.774217 TCCAAGCTGGGTGGAAGGT 60.774 57.895 7.13 0.00 42.29 3.50
510 1322 1.303643 CCAAGCTGGGTGGAAGGTC 60.304 63.158 0.00 0.00 38.54 3.85
511 1323 1.672356 CAAGCTGGGTGGAAGGTCG 60.672 63.158 0.00 0.00 0.00 4.79
512 1324 1.841556 AAGCTGGGTGGAAGGTCGA 60.842 57.895 0.00 0.00 0.00 4.20
513 1325 1.201429 AAGCTGGGTGGAAGGTCGAT 61.201 55.000 0.00 0.00 0.00 3.59
514 1326 1.201429 AGCTGGGTGGAAGGTCGATT 61.201 55.000 0.00 0.00 0.00 3.34
515 1327 0.744771 GCTGGGTGGAAGGTCGATTC 60.745 60.000 0.00 0.00 0.00 2.52
516 1328 0.905357 CTGGGTGGAAGGTCGATTCT 59.095 55.000 0.00 0.00 0.00 2.40
517 1329 0.902531 TGGGTGGAAGGTCGATTCTC 59.097 55.000 0.00 0.00 0.00 2.87
518 1330 0.179108 GGGTGGAAGGTCGATTCTCG 60.179 60.000 0.00 0.00 42.10 4.04
530 1342 3.961182 TCGATTCTCGAGATTTTACGGG 58.039 45.455 17.44 0.60 44.82 5.28
531 1343 3.628942 TCGATTCTCGAGATTTTACGGGA 59.371 43.478 17.44 0.00 44.82 5.14
532 1344 3.975670 CGATTCTCGAGATTTTACGGGAG 59.024 47.826 17.44 0.00 43.74 4.30
533 1345 4.261072 CGATTCTCGAGATTTTACGGGAGA 60.261 45.833 17.44 0.00 43.74 3.71
534 1346 5.589192 GATTCTCGAGATTTTACGGGAGAA 58.411 41.667 17.44 4.04 42.59 2.87
535 1347 5.593679 TTCTCGAGATTTTACGGGAGAAT 57.406 39.130 17.44 0.00 40.08 2.40
536 1348 5.184340 TCTCGAGATTTTACGGGAGAATC 57.816 43.478 12.08 0.00 34.02 2.52
537 1349 3.961182 TCGAGATTTTACGGGAGAATCG 58.039 45.455 0.00 0.00 35.49 3.34
538 1350 3.050619 CGAGATTTTACGGGAGAATCGG 58.949 50.000 0.00 0.00 35.49 4.18
539 1351 2.801111 GAGATTTTACGGGAGAATCGGC 59.199 50.000 0.00 0.00 35.49 5.54
540 1352 1.871676 GATTTTACGGGAGAATCGGCC 59.128 52.381 0.00 0.00 34.37 6.13
541 1353 0.460635 TTTTACGGGAGAATCGGCCG 60.461 55.000 22.12 22.12 44.10 6.13
542 1354 1.321805 TTTACGGGAGAATCGGCCGA 61.322 55.000 33.12 33.12 41.61 5.54
543 1355 1.321805 TTACGGGAGAATCGGCCGAA 61.322 55.000 34.66 16.30 41.61 4.30
544 1356 1.111116 TACGGGAGAATCGGCCGAAT 61.111 55.000 34.66 26.43 41.61 3.34
545 1357 1.956170 CGGGAGAATCGGCCGAATG 60.956 63.158 34.66 7.61 41.61 2.67
546 1358 1.445942 GGGAGAATCGGCCGAATGA 59.554 57.895 34.66 9.93 34.37 2.57
547 1359 0.179056 GGGAGAATCGGCCGAATGAA 60.179 55.000 34.66 9.45 34.37 2.57
548 1360 0.938008 GGAGAATCGGCCGAATGAAC 59.062 55.000 34.66 20.98 34.37 3.18
549 1361 1.473434 GGAGAATCGGCCGAATGAACT 60.473 52.381 34.66 24.26 34.37 3.01
550 1362 1.861575 GAGAATCGGCCGAATGAACTC 59.138 52.381 34.66 27.29 0.00 3.01
551 1363 0.577269 GAATCGGCCGAATGAACTCG 59.423 55.000 34.66 0.00 38.58 4.18
589 1401 2.847327 AGAGACTGACACATGGGTTG 57.153 50.000 0.00 0.73 0.00 3.77
648 1461 1.614241 AATCCAGCGAACTACCGGCT 61.614 55.000 0.00 0.00 37.55 5.52
660 1474 0.260816 TACCGGCTCCATCAGTAGGT 59.739 55.000 0.00 0.00 37.63 3.08
680 1494 2.498885 GTTTCCATACCGGTAGACCACT 59.501 50.000 20.91 0.00 35.57 4.00
742 1556 4.654262 AGTGTTCCCATGGTATCGTTAGAT 59.346 41.667 11.73 0.00 40.76 1.98
781 1595 2.716017 GCCGAGCAGAGCCAGTACT 61.716 63.158 0.00 0.00 0.00 2.73
790 1604 5.810095 AGCAGAGCCAGTACTAAGAAAAAT 58.190 37.500 0.00 0.00 0.00 1.82
833 1647 0.170116 GTCACTGACAGAGAGGCTCG 59.830 60.000 10.08 0.00 35.36 5.03
841 1655 1.604023 AGAGAGGCTCGGTTCACGT 60.604 57.895 9.22 0.00 44.69 4.49
844 1658 1.300697 GAGGCTCGGTTCACGTGTT 60.301 57.895 16.51 0.00 44.69 3.32
847 1661 1.300697 GCTCGGTTCACGTGTTCCT 60.301 57.895 16.51 0.00 44.69 3.36
850 1664 2.019951 CGGTTCACGTGTTCCTCGG 61.020 63.158 16.51 3.57 37.93 4.63
880 1694 1.563435 CTGCGGTGACACAAGCTCAG 61.563 60.000 20.79 10.81 0.00 3.35
882 1696 0.671781 GCGGTGACACAAGCTCAGAT 60.672 55.000 15.33 0.00 0.00 2.90
891 1706 1.115467 CAAGCTCAGATAGTCCCGGT 58.885 55.000 0.00 0.00 0.00 5.28
973 1790 0.881118 GGCGCAGTGAAATTGGAAGA 59.119 50.000 10.83 0.00 0.00 2.87
974 1791 1.135575 GGCGCAGTGAAATTGGAAGAG 60.136 52.381 10.83 0.00 0.00 2.85
978 1795 3.748048 CGCAGTGAAATTGGAAGAGAGAA 59.252 43.478 0.00 0.00 0.00 2.87
979 1796 4.214119 CGCAGTGAAATTGGAAGAGAGAAA 59.786 41.667 0.00 0.00 0.00 2.52
980 1797 5.106396 CGCAGTGAAATTGGAAGAGAGAAAT 60.106 40.000 0.00 0.00 0.00 2.17
1023 1860 2.282958 AAGACCTCCTCGTCGCCA 60.283 61.111 0.00 0.00 37.85 5.69
1602 2445 2.430367 GGCCTCAAGGACACCGTT 59.570 61.111 0.00 0.00 44.76 4.44
1749 2592 3.781770 CTCATCGCCAGGACGAGGC 62.782 68.421 11.57 0.00 46.69 4.70
1971 2814 0.683973 CTGTGTCCTCTTCAGCCAGT 59.316 55.000 0.00 0.00 0.00 4.00
2079 2922 5.782893 TTGTGCCCATAGCCAATTATAAC 57.217 39.130 0.00 0.00 42.71 1.89
2136 2979 4.494350 CACTGCAGTGTTCAAGCTTTAT 57.506 40.909 34.04 0.00 40.96 1.40
2244 3087 7.615582 TGAGTTTGATCCAGACATTTATGAC 57.384 36.000 0.00 0.00 0.00 3.06
2245 3088 7.167535 TGAGTTTGATCCAGACATTTATGACA 58.832 34.615 0.00 0.00 0.00 3.58
2274 3117 2.236395 GGAAGGTGAGCCTAGCTTTACA 59.764 50.000 0.00 0.00 46.33 2.41
2340 3183 0.181587 TCTTGCAACAAGTCCGGGAA 59.818 50.000 0.00 0.00 0.00 3.97
2528 3371 3.717294 GGGATGGGCGACTGGTGT 61.717 66.667 0.00 0.00 0.00 4.16
2814 3657 6.605471 ATTAAGCCATTGATGCATGATGAT 57.395 33.333 17.17 8.51 0.00 2.45
2835 3678 3.059352 ACCATGGTAACTGACTCAAGC 57.941 47.619 18.10 0.00 37.61 4.01
2974 3817 5.191522 TGAGATTTGTGATTCACCCCTGATA 59.808 40.000 14.05 0.00 32.73 2.15
3026 3869 3.693085 AGAATGTCATAAGCTTGCACCAG 59.307 43.478 9.86 0.00 0.00 4.00
3143 3990 1.535462 GTGCCGCTGTTGATTACTGTT 59.465 47.619 0.00 0.00 0.00 3.16
3147 3994 3.821841 CCGCTGTTGATTACTGTTTTCC 58.178 45.455 0.00 0.00 0.00 3.13
3238 4085 6.438327 TGTACTTTCGAGCGTTAACTTAAC 57.562 37.500 3.71 2.01 35.37 2.01
3252 4099 7.644945 GCGTTAACTTAACCTATGTTTTTGTGT 59.355 33.333 3.71 0.00 35.87 3.72
3300 4148 5.528043 CTACATCAGTAGCAGGACAATCT 57.472 43.478 0.00 0.00 41.12 2.40
3301 4149 4.134379 ACATCAGTAGCAGGACAATCTG 57.866 45.455 0.00 0.00 37.79 2.90
3319 4167 3.431856 TCTGCTGTGTTATTACTACGCG 58.568 45.455 3.53 3.53 0.00 6.01
3335 4183 2.647019 ACGCGAGTTGCATCATTCTCG 61.647 52.381 15.93 15.82 46.40 4.04
3349 4197 4.744570 TCATTCTCGTCGTTGCTTCTTAT 58.255 39.130 0.00 0.00 0.00 1.73
3450 4298 6.586082 CCTTGTTTGCAATGTTACCTATTGTC 59.414 38.462 0.00 0.00 37.73 3.18
3460 4308 9.236691 CAATGTTACCTATTGTCAATGCAATAC 57.763 33.333 8.39 2.49 39.50 1.89
3461 4309 8.752005 ATGTTACCTATTGTCAATGCAATACT 57.248 30.769 8.39 0.33 39.50 2.12
3498 4353 8.542926 ACCTGATATGATATGCTGTTGCTTATA 58.457 33.333 0.00 0.00 38.92 0.98
3615 4470 4.711399 CTTCCCTGTGCATTGATCTATGA 58.289 43.478 19.51 3.79 0.00 2.15
3627 4482 6.261603 GCATTGATCTATGATTGACTGGTTGA 59.738 38.462 19.51 0.00 0.00 3.18
3731 4587 6.361433 TCAAACATTGTAAAGACAGGAAGGA 58.639 36.000 0.00 0.00 36.76 3.36
3767 4623 4.863491 CTGGCAACCAGTATATTTCATGC 58.137 43.478 5.43 0.00 45.82 4.06
3768 4624 4.243007 GGCAACCAGTATATTTCATGCC 57.757 45.455 0.00 0.00 44.44 4.40
3769 4625 4.916983 GCAACCAGTATATTTCATGCCA 57.083 40.909 0.00 0.00 0.00 4.92
3770 4626 5.458041 GCAACCAGTATATTTCATGCCAT 57.542 39.130 0.00 0.00 0.00 4.40
3771 4627 6.573664 GCAACCAGTATATTTCATGCCATA 57.426 37.500 0.00 0.00 0.00 2.74
3772 4628 7.161773 GCAACCAGTATATTTCATGCCATAT 57.838 36.000 0.00 0.00 0.00 1.78
3773 4629 8.279970 GCAACCAGTATATTTCATGCCATATA 57.720 34.615 0.00 0.00 0.00 0.86
3774 4630 8.906867 GCAACCAGTATATTTCATGCCATATAT 58.093 33.333 6.85 0.00 0.00 0.86
3776 4632 8.455903 ACCAGTATATTTCATGCCATATATGC 57.544 34.615 7.24 3.97 0.00 3.14
3777 4633 8.277197 ACCAGTATATTTCATGCCATATATGCT 58.723 33.333 7.24 0.00 0.00 3.79
3778 4634 8.565416 CCAGTATATTTCATGCCATATATGCTG 58.435 37.037 7.24 13.10 40.41 4.41
3827 4746 4.660789 ATGGGCAGCTAAAATCATTGAC 57.339 40.909 0.00 0.00 0.00 3.18
3836 4755 5.597182 AGCTAAAATCATTGACCATGCTCAT 59.403 36.000 0.00 0.00 32.13 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 2.524640 TACACCCACCTGCGACCA 60.525 61.111 0.00 0.00 0.00 4.02
31 32 0.103208 CGTCCCCAGATGTGAGCTAC 59.897 60.000 0.00 0.00 0.00 3.58
43 44 3.235481 TTGCGACCTTCGTCCCCA 61.235 61.111 0.00 0.00 42.81 4.96
51 52 1.837090 AACCTCTGGTTGCGACCTT 59.163 52.632 23.87 6.71 45.07 3.50
80 81 3.838271 TCACGAGATCAGGCCGCC 61.838 66.667 0.00 0.00 0.00 6.13
82 83 2.105128 GGTCACGAGATCAGGCCG 59.895 66.667 0.00 0.00 0.00 6.13
191 977 0.601046 CTGGTGAGCTCTTTGTCGCA 60.601 55.000 16.19 0.00 0.00 5.10
195 981 1.000283 CGTCTCTGGTGAGCTCTTTGT 60.000 52.381 16.19 0.00 40.03 2.83
227 1013 5.751680 CAATAGCCATGAATTGTACCTTCG 58.248 41.667 0.00 0.00 0.00 3.79
243 1029 1.438651 TCACACGTGAAGCAATAGCC 58.561 50.000 25.01 0.00 36.59 3.93
266 1052 4.440880 CATTTCAGGGTCTAGCTCTCTTG 58.559 47.826 0.00 0.00 0.00 3.02
267 1053 3.454082 CCATTTCAGGGTCTAGCTCTCTT 59.546 47.826 0.00 0.00 0.00 2.85
271 1057 4.429854 AATCCATTTCAGGGTCTAGCTC 57.570 45.455 0.00 0.00 0.00 4.09
299 1085 6.601613 TCGATGCTAAATTCACCCAAGTAATT 59.398 34.615 0.00 0.00 0.00 1.40
308 1120 4.142600 ACTTGCTTCGATGCTAAATTCACC 60.143 41.667 22.11 0.00 0.00 4.02
324 1136 2.484264 GCATCGAAACACCTACTTGCTT 59.516 45.455 0.00 0.00 0.00 3.91
334 1146 0.109319 ATTTGCGGGCATCGAAACAC 60.109 50.000 2.84 0.00 42.43 3.32
342 1154 3.731089 CCATATGAAAATTTGCGGGCAT 58.269 40.909 3.65 0.00 0.00 4.40
348 1160 2.284952 GCGGTGCCATATGAAAATTTGC 59.715 45.455 3.65 0.00 0.00 3.68
369 1181 1.380785 AGATGCCCCATTGTGCAGG 60.381 57.895 0.00 0.00 41.46 4.85
371 1183 1.077086 ACAGATGCCCCATTGTGCA 59.923 52.632 1.22 1.22 42.52 4.57
372 1184 1.252904 ACACAGATGCCCCATTGTGC 61.253 55.000 14.52 0.00 43.50 4.57
373 1185 0.813184 GACACAGATGCCCCATTGTG 59.187 55.000 13.69 13.69 44.81 3.33
374 1186 0.405198 TGACACAGATGCCCCATTGT 59.595 50.000 0.00 0.00 0.00 2.71
375 1187 1.548081 TTGACACAGATGCCCCATTG 58.452 50.000 0.00 0.00 0.00 2.82
376 1188 2.307496 TTTGACACAGATGCCCCATT 57.693 45.000 0.00 0.00 0.00 3.16
377 1189 2.307496 TTTTGACACAGATGCCCCAT 57.693 45.000 0.00 0.00 0.00 4.00
378 1190 2.079170 TTTTTGACACAGATGCCCCA 57.921 45.000 0.00 0.00 0.00 4.96
379 1191 2.354003 CCATTTTTGACACAGATGCCCC 60.354 50.000 0.00 0.00 0.00 5.80
380 1192 2.562298 TCCATTTTTGACACAGATGCCC 59.438 45.455 0.00 0.00 0.00 5.36
381 1193 3.940209 TCCATTTTTGACACAGATGCC 57.060 42.857 0.00 0.00 0.00 4.40
382 1194 5.121142 CCAAATCCATTTTTGACACAGATGC 59.879 40.000 0.00 0.00 38.58 3.91
383 1195 5.121142 GCCAAATCCATTTTTGACACAGATG 59.879 40.000 0.00 0.00 38.58 2.90
384 1196 5.221682 TGCCAAATCCATTTTTGACACAGAT 60.222 36.000 0.00 0.00 38.58 2.90
397 1209 3.742013 GCCAAAATCGATGCCAAATCCAT 60.742 43.478 0.00 0.00 0.00 3.41
409 1221 3.693411 GCCTTGGGCCAAAATCGA 58.307 55.556 21.28 0.00 44.06 3.59
431 1243 2.962569 GCCCAAAAGAACTCGGCC 59.037 61.111 0.00 0.00 33.30 6.13
432 1244 1.305930 ATCGCCCAAAAGAACTCGGC 61.306 55.000 0.00 0.00 36.21 5.54
433 1245 1.130561 GAATCGCCCAAAAGAACTCGG 59.869 52.381 0.00 0.00 0.00 4.63
434 1246 1.804151 TGAATCGCCCAAAAGAACTCG 59.196 47.619 0.00 0.00 0.00 4.18
435 1247 3.181496 GGATGAATCGCCCAAAAGAACTC 60.181 47.826 0.00 0.00 0.00 3.01
436 1248 2.755103 GGATGAATCGCCCAAAAGAACT 59.245 45.455 0.00 0.00 0.00 3.01
437 1249 2.491693 TGGATGAATCGCCCAAAAGAAC 59.508 45.455 0.00 0.00 0.00 3.01
438 1250 2.754552 CTGGATGAATCGCCCAAAAGAA 59.245 45.455 0.00 0.00 0.00 2.52
439 1251 2.026356 TCTGGATGAATCGCCCAAAAGA 60.026 45.455 0.00 0.00 0.00 2.52
440 1252 2.368439 TCTGGATGAATCGCCCAAAAG 58.632 47.619 0.00 0.00 0.00 2.27
441 1253 2.505650 TCTGGATGAATCGCCCAAAA 57.494 45.000 0.00 0.00 0.00 2.44
442 1254 2.505650 TTCTGGATGAATCGCCCAAA 57.494 45.000 0.00 0.00 0.00 3.28
443 1255 2.734755 ATTCTGGATGAATCGCCCAA 57.265 45.000 0.00 0.00 41.17 4.12
451 1263 6.045318 GTCGATTCTCAAGATTCTGGATGAA 58.955 40.000 0.00 0.00 39.24 2.57
452 1264 5.362143 AGTCGATTCTCAAGATTCTGGATGA 59.638 40.000 0.00 0.00 0.00 2.92
453 1265 5.599732 AGTCGATTCTCAAGATTCTGGATG 58.400 41.667 0.00 0.00 0.00 3.51
454 1266 5.598005 AGAGTCGATTCTCAAGATTCTGGAT 59.402 40.000 4.34 0.00 36.97 3.41
455 1267 4.952957 AGAGTCGATTCTCAAGATTCTGGA 59.047 41.667 4.34 0.00 36.97 3.86
456 1268 5.261209 AGAGTCGATTCTCAAGATTCTGG 57.739 43.478 4.34 0.00 36.97 3.86
457 1269 6.253298 GTGAAGAGTCGATTCTCAAGATTCTG 59.747 42.308 11.20 0.00 36.97 3.02
458 1270 6.329496 GTGAAGAGTCGATTCTCAAGATTCT 58.671 40.000 11.20 0.00 36.97 2.40
459 1271 5.518487 GGTGAAGAGTCGATTCTCAAGATTC 59.482 44.000 11.20 4.67 36.97 2.52
460 1272 5.415221 GGTGAAGAGTCGATTCTCAAGATT 58.585 41.667 11.20 0.00 36.97 2.40
461 1273 4.142049 GGGTGAAGAGTCGATTCTCAAGAT 60.142 45.833 11.20 0.00 36.97 2.40
462 1274 3.193691 GGGTGAAGAGTCGATTCTCAAGA 59.806 47.826 11.20 0.00 36.97 3.02
463 1275 3.056536 TGGGTGAAGAGTCGATTCTCAAG 60.057 47.826 11.20 0.00 36.97 3.02
464 1276 2.897326 TGGGTGAAGAGTCGATTCTCAA 59.103 45.455 11.20 0.00 36.97 3.02
465 1277 2.493675 CTGGGTGAAGAGTCGATTCTCA 59.506 50.000 11.20 8.20 36.97 3.27
466 1278 2.737039 GCTGGGTGAAGAGTCGATTCTC 60.737 54.545 11.20 2.75 34.96 2.87
467 1279 1.205893 GCTGGGTGAAGAGTCGATTCT 59.794 52.381 4.34 4.34 0.00 2.40
468 1280 1.205893 AGCTGGGTGAAGAGTCGATTC 59.794 52.381 0.00 0.00 0.00 2.52
469 1281 1.270907 AGCTGGGTGAAGAGTCGATT 58.729 50.000 0.00 0.00 0.00 3.34
470 1282 1.205893 GAAGCTGGGTGAAGAGTCGAT 59.794 52.381 0.00 0.00 0.00 3.59
471 1283 0.603569 GAAGCTGGGTGAAGAGTCGA 59.396 55.000 0.00 0.00 0.00 4.20
472 1284 0.605589 AGAAGCTGGGTGAAGAGTCG 59.394 55.000 0.00 0.00 0.00 4.18
473 1285 1.066502 GGAGAAGCTGGGTGAAGAGTC 60.067 57.143 0.00 0.00 0.00 3.36
474 1286 0.980423 GGAGAAGCTGGGTGAAGAGT 59.020 55.000 0.00 0.00 0.00 3.24
475 1287 0.979665 TGGAGAAGCTGGGTGAAGAG 59.020 55.000 0.00 0.00 0.00 2.85
476 1288 1.349026 CTTGGAGAAGCTGGGTGAAGA 59.651 52.381 0.00 0.00 0.00 2.87
477 1289 1.818642 CTTGGAGAAGCTGGGTGAAG 58.181 55.000 0.00 0.00 0.00 3.02
487 1299 0.401738 TTCCACCCAGCTTGGAGAAG 59.598 55.000 11.55 0.00 44.13 2.85
488 1300 0.401738 CTTCCACCCAGCTTGGAGAA 59.598 55.000 11.55 11.58 44.13 2.87
489 1301 1.492133 CCTTCCACCCAGCTTGGAGA 61.492 60.000 11.55 4.05 44.13 3.71
490 1302 1.001641 CCTTCCACCCAGCTTGGAG 60.002 63.158 11.55 2.03 44.13 3.86
491 1303 1.774217 ACCTTCCACCCAGCTTGGA 60.774 57.895 11.55 6.14 40.96 3.53
492 1304 1.303643 GACCTTCCACCCAGCTTGG 60.304 63.158 1.37 1.37 37.25 3.61
493 1305 1.672356 CGACCTTCCACCCAGCTTG 60.672 63.158 0.00 0.00 0.00 4.01
494 1306 1.201429 ATCGACCTTCCACCCAGCTT 61.201 55.000 0.00 0.00 0.00 3.74
495 1307 1.201429 AATCGACCTTCCACCCAGCT 61.201 55.000 0.00 0.00 0.00 4.24
496 1308 0.744771 GAATCGACCTTCCACCCAGC 60.745 60.000 0.00 0.00 0.00 4.85
497 1309 0.905357 AGAATCGACCTTCCACCCAG 59.095 55.000 0.00 0.00 0.00 4.45
498 1310 0.902531 GAGAATCGACCTTCCACCCA 59.097 55.000 0.00 0.00 0.00 4.51
499 1311 3.762674 GAGAATCGACCTTCCACCC 57.237 57.895 0.00 0.00 0.00 4.61
511 1323 5.184340 TCTCCCGTAAAATCTCGAGAATC 57.816 43.478 20.91 7.33 0.00 2.52
512 1324 5.593679 TTCTCCCGTAAAATCTCGAGAAT 57.406 39.130 20.91 8.52 0.00 2.40
513 1325 5.589192 GATTCTCCCGTAAAATCTCGAGAA 58.411 41.667 20.91 0.00 32.94 2.87
514 1326 4.261072 CGATTCTCCCGTAAAATCTCGAGA 60.261 45.833 19.19 19.19 0.00 4.04
515 1327 3.975670 CGATTCTCCCGTAAAATCTCGAG 59.024 47.826 5.93 5.93 0.00 4.04
516 1328 3.243301 CCGATTCTCCCGTAAAATCTCGA 60.243 47.826 0.00 0.00 0.00 4.04
517 1329 3.050619 CCGATTCTCCCGTAAAATCTCG 58.949 50.000 0.00 0.00 0.00 4.04
518 1330 2.801111 GCCGATTCTCCCGTAAAATCTC 59.199 50.000 0.00 0.00 0.00 2.75
519 1331 2.484947 GGCCGATTCTCCCGTAAAATCT 60.485 50.000 0.00 0.00 0.00 2.40
520 1332 1.871676 GGCCGATTCTCCCGTAAAATC 59.128 52.381 0.00 0.00 0.00 2.17
521 1333 1.808891 CGGCCGATTCTCCCGTAAAAT 60.809 52.381 24.07 0.00 37.36 1.82
522 1334 0.460635 CGGCCGATTCTCCCGTAAAA 60.461 55.000 24.07 0.00 37.36 1.52
523 1335 1.142314 CGGCCGATTCTCCCGTAAA 59.858 57.895 24.07 0.00 37.36 2.01
524 1336 1.321805 TTCGGCCGATTCTCCCGTAA 61.322 55.000 31.56 6.73 42.48 3.18
525 1337 1.111116 ATTCGGCCGATTCTCCCGTA 61.111 55.000 31.56 11.27 42.48 4.02
526 1338 2.432300 ATTCGGCCGATTCTCCCGT 61.432 57.895 31.56 4.87 42.48 5.28
527 1339 1.956170 CATTCGGCCGATTCTCCCG 60.956 63.158 31.56 9.30 43.21 5.14
528 1340 0.179056 TTCATTCGGCCGATTCTCCC 60.179 55.000 31.56 0.00 0.00 4.30
529 1341 0.938008 GTTCATTCGGCCGATTCTCC 59.062 55.000 31.56 13.66 0.00 3.71
530 1342 1.861575 GAGTTCATTCGGCCGATTCTC 59.138 52.381 31.56 24.43 0.00 2.87
531 1343 1.802880 CGAGTTCATTCGGCCGATTCT 60.803 52.381 31.56 21.05 36.95 2.40
532 1344 0.577269 CGAGTTCATTCGGCCGATTC 59.423 55.000 31.56 17.45 36.95 2.52
533 1345 2.677971 CGAGTTCATTCGGCCGATT 58.322 52.632 31.56 23.53 36.95 3.34
534 1346 4.420143 CGAGTTCATTCGGCCGAT 57.580 55.556 31.56 13.53 36.95 4.18
540 1352 4.369182 ACTATTAAGGCCGAGTTCATTCG 58.631 43.478 0.00 0.00 40.18 3.34
541 1353 7.272948 CGTATACTATTAAGGCCGAGTTCATTC 59.727 40.741 0.00 0.00 0.00 2.67
542 1354 7.040201 TCGTATACTATTAAGGCCGAGTTCATT 60.040 37.037 0.00 0.00 0.00 2.57
543 1355 6.432162 TCGTATACTATTAAGGCCGAGTTCAT 59.568 38.462 0.00 0.00 0.00 2.57
544 1356 5.764686 TCGTATACTATTAAGGCCGAGTTCA 59.235 40.000 0.00 0.00 0.00 3.18
545 1357 6.246420 TCGTATACTATTAAGGCCGAGTTC 57.754 41.667 0.00 0.00 0.00 3.01
546 1358 6.830873 ATCGTATACTATTAAGGCCGAGTT 57.169 37.500 0.00 0.00 0.00 3.01
547 1359 7.334090 TCTATCGTATACTATTAAGGCCGAGT 58.666 38.462 0.00 0.00 0.00 4.18
548 1360 7.710044 TCTCTATCGTATACTATTAAGGCCGAG 59.290 40.741 0.00 0.00 0.00 4.63
549 1361 7.493971 GTCTCTATCGTATACTATTAAGGCCGA 59.506 40.741 0.00 0.00 0.00 5.54
550 1362 7.495279 AGTCTCTATCGTATACTATTAAGGCCG 59.505 40.741 0.00 0.00 0.00 6.13
551 1363 8.614346 CAGTCTCTATCGTATACTATTAAGGCC 58.386 40.741 0.00 0.00 0.00 5.19
552 1364 9.381033 TCAGTCTCTATCGTATACTATTAAGGC 57.619 37.037 0.56 0.00 0.00 4.35
558 1370 9.157104 CATGTGTCAGTCTCTATCGTATACTAT 57.843 37.037 0.56 0.00 0.00 2.12
589 1401 0.321653 GTCACTGGGTCCCATCACAC 60.322 60.000 12.23 2.34 30.82 3.82
592 1404 1.151921 TGGTCACTGGGTCCCATCA 60.152 57.895 12.23 2.65 30.82 3.07
648 1461 3.386726 CGGTATGGAAACCTACTGATGGA 59.613 47.826 0.00 0.00 37.39 3.41
660 1474 2.823959 AGTGGTCTACCGGTATGGAAA 58.176 47.619 16.25 0.00 42.00 3.13
680 1494 1.136500 TGCGTCTCTCTACTCTCGCTA 59.864 52.381 8.63 0.00 43.23 4.26
742 1556 0.959372 GTTCGGAGAGGGACGACTCA 60.959 60.000 0.00 0.00 39.97 3.41
781 1595 9.602568 GGGTTTGGTTTGAGTTAATTTTTCTTA 57.397 29.630 0.00 0.00 0.00 2.10
790 1604 3.702045 CTGGTGGGTTTGGTTTGAGTTAA 59.298 43.478 0.00 0.00 0.00 2.01
833 1647 0.531311 AACCGAGGAACACGTGAACC 60.531 55.000 25.01 22.70 41.73 3.62
841 1655 3.961414 GGGCCCAACCGAGGAACA 61.961 66.667 19.95 0.00 40.62 3.18
869 1683 1.478510 CGGGACTATCTGAGCTTGTGT 59.521 52.381 0.00 0.00 0.00 3.72
891 1706 2.883730 GTTATCGGCTGCGCGTCA 60.884 61.111 8.43 5.42 0.00 4.35
1602 2445 2.501128 GCCTGCCTGATACGCTCA 59.499 61.111 0.00 0.00 0.00 4.26
1758 2601 2.206750 TCCGTATATTCAAACCTGCGC 58.793 47.619 0.00 0.00 0.00 6.09
2079 2922 9.140286 TGATATACAAAACTCTTGTCTTTCTCG 57.860 33.333 0.00 0.00 34.11 4.04
2136 2979 2.882677 ATGACCTGAGTGCACGGCA 61.883 57.895 12.01 12.91 35.60 5.69
2244 3087 2.295885 GGCTCACCTTCCTCATTGATG 58.704 52.381 0.00 0.00 0.00 3.07
2245 3088 2.725221 GGCTCACCTTCCTCATTGAT 57.275 50.000 0.00 0.00 0.00 2.57
2274 3117 6.069088 TGTCAACATCTACATCCCCCTTAATT 60.069 38.462 0.00 0.00 0.00 1.40
2328 3171 0.969894 CTCTGAGTTCCCGGACTTGT 59.030 55.000 0.73 0.00 0.00 3.16
2340 3183 0.114168 AGACCACCTCTGCTCTGAGT 59.886 55.000 6.53 0.00 32.50 3.41
2528 3371 3.669536 TGATCTAAATGGTGCGACACAA 58.330 40.909 11.20 1.48 35.86 3.33
2541 3384 4.135747 TGCACCATCGTGATGATCTAAA 57.864 40.909 11.35 0.00 43.14 1.85
2814 3657 3.838317 AGCTTGAGTCAGTTACCATGGTA 59.162 43.478 21.05 21.05 0.00 3.25
2835 3678 6.046593 TCCGTCTATTTGTATGCCTAACAAG 58.953 40.000 0.00 0.00 38.05 3.16
3026 3869 6.694447 TCCACCTACAGACACTACATTAAAC 58.306 40.000 0.00 0.00 0.00 2.01
3095 3938 9.793259 ATAGACAAGTTAAGAAGGTTGAATTGA 57.207 29.630 0.00 0.00 0.00 2.57
3143 3990 6.405731 CCAATGTTCAACTGTCTTGAAGGAAA 60.406 38.462 0.00 0.00 38.88 3.13
3147 3994 5.505173 ACCAATGTTCAACTGTCTTGAAG 57.495 39.130 0.00 0.00 38.88 3.02
3203 4050 9.740239 ACGCTCGAAAGTACAATAATAAGATAA 57.260 29.630 0.00 0.00 0.00 1.75
3228 4075 9.791820 ACACACAAAAACATAGGTTAAGTTAAC 57.208 29.630 16.07 16.07 35.82 2.01
3252 4099 2.287487 CCAAATTCGACACATGTGCACA 60.287 45.455 25.68 24.08 0.00 4.57
3265 4113 1.396648 TGATGTAGTGCGCCAAATTCG 59.603 47.619 4.18 0.00 0.00 3.34
3299 4147 3.431856 TCGCGTAGTAATAACACAGCAG 58.568 45.455 5.77 0.00 0.00 4.24
3300 4148 3.119743 ACTCGCGTAGTAATAACACAGCA 60.120 43.478 5.77 0.00 36.36 4.41
3301 4149 3.432782 ACTCGCGTAGTAATAACACAGC 58.567 45.455 5.77 0.00 36.36 4.40
3319 4167 2.263077 ACGACGAGAATGATGCAACTC 58.737 47.619 0.00 0.00 0.00 3.01
3335 4183 4.098416 GGATGCAAATAAGAAGCAACGAC 58.902 43.478 0.00 0.00 42.15 4.34
3395 4243 8.937207 AATGGACGACTAAGTATAGTAGGATT 57.063 34.615 0.00 0.00 42.47 3.01
3464 4314 7.776969 ACAGCATATCATATCAGGTTCAGTTTT 59.223 33.333 0.00 0.00 0.00 2.43
3513 4368 6.664816 AGGAACTCTGGAATTTTCAATATGCA 59.335 34.615 0.00 0.00 0.00 3.96
3615 4470 6.061441 TCACAGTAAACATCAACCAGTCAAT 58.939 36.000 0.00 0.00 0.00 2.57
3627 4482 6.215636 AGGAATACCCTTCTCACAGTAAACAT 59.784 38.462 0.00 0.00 44.85 2.71
3764 4620 5.356190 GTGAATACTGCAGCATATATGGCAT 59.644 40.000 15.27 4.88 35.45 4.40
3765 4621 4.696877 GTGAATACTGCAGCATATATGGCA 59.303 41.667 15.27 14.10 34.66 4.92
3766 4622 4.696877 TGTGAATACTGCAGCATATATGGC 59.303 41.667 15.27 10.39 0.00 4.40
3767 4623 6.997239 ATGTGAATACTGCAGCATATATGG 57.003 37.500 15.27 0.00 0.00 2.74
3770 4626 9.948964 AGAATTATGTGAATACTGCAGCATATA 57.051 29.630 15.27 8.84 0.00 0.86
3771 4627 8.859236 AGAATTATGTGAATACTGCAGCATAT 57.141 30.769 15.27 9.84 0.00 1.78
3772 4628 8.562052 CAAGAATTATGTGAATACTGCAGCATA 58.438 33.333 15.27 9.39 0.00 3.14
3773 4629 7.423199 CAAGAATTATGTGAATACTGCAGCAT 58.577 34.615 15.27 10.43 0.00 3.79
3774 4630 6.183360 CCAAGAATTATGTGAATACTGCAGCA 60.183 38.462 15.27 0.00 0.00 4.41
3775 4631 6.038603 TCCAAGAATTATGTGAATACTGCAGC 59.961 38.462 15.27 0.00 0.00 5.25
3776 4632 7.558161 TCCAAGAATTATGTGAATACTGCAG 57.442 36.000 13.48 13.48 0.00 4.41
3777 4633 7.392953 TGTTCCAAGAATTATGTGAATACTGCA 59.607 33.333 0.00 0.00 0.00 4.41
3778 4634 7.761409 TGTTCCAAGAATTATGTGAATACTGC 58.239 34.615 0.00 0.00 0.00 4.40
3827 4746 9.406828 CACTAATAATCATTTTCATGAGCATGG 57.593 33.333 10.31 0.00 42.93 3.66
3866 4785 2.084546 ACGATTTTAGCTGCCCAGAAC 58.915 47.619 0.00 0.00 0.00 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.