Multiple sequence alignment - TraesCS4B01G224300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G224300 chr4B 100.000 4101 0 0 1 4101 469036778 469032678 0.000000e+00 7574.0
1 TraesCS4B01G224300 chr4A 90.438 2876 140 47 654 3462 81799249 81802056 0.000000e+00 3663.0
2 TraesCS4B01G224300 chr4A 87.879 462 27 9 140 574 81798685 81799144 2.190000e-142 516.0
3 TraesCS4B01G224300 chr4A 82.394 284 28 8 3782 4061 81815011 81815276 1.150000e-55 228.0
4 TraesCS4B01G224300 chr4A 87.654 81 4 4 10 84 81798532 81798612 5.650000e-14 89.8
5 TraesCS4B01G224300 chr4A 100.000 43 0 0 4059 4101 577472782 577472824 3.400000e-11 80.5
6 TraesCS4B01G224300 chr4D 92.823 2522 90 41 949 3446 381889498 381887044 0.000000e+00 3570.0
7 TraesCS4B01G224300 chr4D 87.438 812 40 25 140 907 381890294 381889501 0.000000e+00 878.0
8 TraesCS4B01G224300 chr4D 84.211 247 28 8 3824 4061 381885913 381885669 3.190000e-56 230.0
9 TraesCS4B01G224300 chr4D 86.275 102 4 5 53 146 381890421 381890322 7.250000e-18 102.0
10 TraesCS4B01G224300 chr7D 79.104 134 28 0 1841 1974 241882327 241882460 4.360000e-15 93.5
11 TraesCS4B01G224300 chr7D 94.444 54 1 2 4047 4100 106381705 106381654 9.450000e-12 82.4
12 TraesCS4B01G224300 chr7A 77.181 149 34 0 1841 1989 256214334 256214186 2.030000e-13 87.9
13 TraesCS4B01G224300 chr7B 77.612 134 30 0 1841 1974 217625186 217625319 9.450000e-12 82.4
14 TraesCS4B01G224300 chr6A 100.000 43 0 0 4059 4101 98986287 98986329 3.400000e-11 80.5
15 TraesCS4B01G224300 chr5A 100.000 43 0 0 4059 4101 666704114 666704156 3.400000e-11 80.5
16 TraesCS4B01G224300 chr3D 97.778 45 1 0 4056 4100 58053599 58053555 1.220000e-10 78.7
17 TraesCS4B01G224300 chr3D 94.000 50 2 1 4053 4101 568308851 568308802 1.580000e-09 75.0
18 TraesCS4B01G224300 chr1A 94.118 51 1 1 4051 4101 535049622 535049574 4.400000e-10 76.8
19 TraesCS4B01G224300 chr5D 95.745 47 1 1 4054 4100 445794274 445794229 1.580000e-09 75.0
20 TraesCS4B01G224300 chr1D 95.745 47 1 1 4054 4100 311900848 311900893 1.580000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G224300 chr4B 469032678 469036778 4100 True 7574.000000 7574 100.00000 1 4101 1 chr4B.!!$R1 4100
1 TraesCS4B01G224300 chr4A 81798532 81802056 3524 False 1422.933333 3663 88.65700 10 3462 3 chr4A.!!$F3 3452
2 TraesCS4B01G224300 chr4D 381885669 381890421 4752 True 1195.000000 3570 87.68675 53 4061 4 chr4D.!!$R1 4008

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
852 981 0.097150 GATTTTGAACCGCTCCGCTC 59.903 55.0 0.0 0.0 0.0 5.03 F
2160 2315 0.040204 CCCTTCCAATCTGTTGCCCT 59.960 55.0 0.0 0.0 33.9 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2456 2633 0.107456 CCAGCCGCCTGATGTAGAAT 59.893 55.0 0.0 0.0 41.77 2.40 R
3965 4996 0.030504 TGTTTTGACACATGGCAGCG 59.969 50.0 0.0 0.0 32.66 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 40 4.460873 CGCCGCGGCCTTCTTTTC 62.461 66.667 42.07 14.11 37.98 2.29
45 52 2.222027 CTTCTTTTCCACTGTTCCGCT 58.778 47.619 0.00 0.00 0.00 5.52
48 55 3.135994 TCTTTTCCACTGTTCCGCTAAC 58.864 45.455 0.00 0.00 38.67 2.34
101 108 0.394192 GAAAGCTGCCTTTTGCCCTT 59.606 50.000 0.00 0.00 41.22 3.95
171 220 0.316204 GCTTGCCATGCTTGTGAAGT 59.684 50.000 0.00 0.00 0.00 3.01
188 237 7.089770 TGTGAAGTTACTCTACATAGCTGAG 57.910 40.000 0.00 0.00 0.00 3.35
189 238 5.974751 GTGAAGTTACTCTACATAGCTGAGC 59.025 44.000 0.00 0.00 0.00 4.26
190 239 5.888724 TGAAGTTACTCTACATAGCTGAGCT 59.111 40.000 13.25 13.25 43.41 4.09
191 240 5.766150 AGTTACTCTACATAGCTGAGCTG 57.234 43.478 18.79 4.45 40.10 4.24
206 255 1.612463 GAGCTGATGGAATGGGAATGC 59.388 52.381 0.00 0.00 0.00 3.56
207 256 1.063492 AGCTGATGGAATGGGAATGCA 60.063 47.619 0.00 0.00 0.00 3.96
246 295 1.594331 GAAGGTTCAGTCAGGCGTTT 58.406 50.000 0.00 0.00 0.00 3.60
284 334 3.872728 CGATGGCGACGTCTCGGA 61.873 66.667 14.70 0.00 44.51 4.55
323 373 6.418226 GCACGTAAGAGTAACTCATAATCCTG 59.582 42.308 0.00 0.00 43.62 3.86
417 483 3.070018 CCAGACGCAAGAAAGAATCTGT 58.930 45.455 0.00 0.00 38.79 3.41
428 494 1.739067 AGAATCTGTAAAGGTGCGCC 58.261 50.000 8.71 8.71 0.00 6.53
429 495 0.373716 GAATCTGTAAAGGTGCGCCG 59.626 55.000 11.42 0.00 40.50 6.46
430 496 0.321298 AATCTGTAAAGGTGCGCCGT 60.321 50.000 11.42 4.31 40.50 5.68
508 579 1.227527 CACGCCCTTGTCAGTCACA 60.228 57.895 0.00 0.00 0.00 3.58
524 598 4.203076 CACGGTCGGTCGGGGATC 62.203 72.222 3.69 0.00 0.00 3.36
535 609 2.419713 GGTCGGGGATCTCCTACAAAAC 60.420 54.545 17.54 2.74 35.95 2.43
567 641 2.436115 CGGCCTCCCTCCGTTTTC 60.436 66.667 0.00 0.00 41.85 2.29
568 642 2.754375 GGCCTCCCTCCGTTTTCA 59.246 61.111 0.00 0.00 0.00 2.69
570 644 0.748367 GGCCTCCCTCCGTTTTCATC 60.748 60.000 0.00 0.00 0.00 2.92
572 646 0.462047 CCTCCCTCCGTTTTCATCCG 60.462 60.000 0.00 0.00 0.00 4.18
573 647 1.078708 TCCCTCCGTTTTCATCCGC 60.079 57.895 0.00 0.00 0.00 5.54
574 648 1.376683 CCCTCCGTTTTCATCCGCA 60.377 57.895 0.00 0.00 0.00 5.69
575 649 1.369091 CCCTCCGTTTTCATCCGCAG 61.369 60.000 0.00 0.00 0.00 5.18
576 650 1.425428 CTCCGTTTTCATCCGCAGC 59.575 57.895 0.00 0.00 0.00 5.25
577 651 1.982073 CTCCGTTTTCATCCGCAGCC 61.982 60.000 0.00 0.00 0.00 4.85
578 652 2.040544 CCGTTTTCATCCGCAGCCT 61.041 57.895 0.00 0.00 0.00 4.58
579 653 1.135315 CGTTTTCATCCGCAGCCTG 59.865 57.895 0.00 0.00 0.00 4.85
580 654 1.508088 GTTTTCATCCGCAGCCTGG 59.492 57.895 0.00 0.00 0.00 4.45
581 655 0.960364 GTTTTCATCCGCAGCCTGGA 60.960 55.000 0.00 0.00 40.46 3.86
582 656 0.677731 TTTTCATCCGCAGCCTGGAG 60.678 55.000 0.00 0.00 39.30 3.86
583 657 1.841302 TTTCATCCGCAGCCTGGAGT 61.841 55.000 0.00 0.00 39.30 3.85
584 658 2.513204 CATCCGCAGCCTGGAGTG 60.513 66.667 0.00 0.00 39.30 3.51
585 659 2.685017 ATCCGCAGCCTGGAGTGA 60.685 61.111 0.00 0.00 39.30 3.41
586 660 2.293318 ATCCGCAGCCTGGAGTGAA 61.293 57.895 0.00 0.00 39.30 3.18
587 661 2.527951 ATCCGCAGCCTGGAGTGAAC 62.528 60.000 0.00 0.00 39.30 3.18
588 662 2.031012 CGCAGCCTGGAGTGAACA 59.969 61.111 0.00 0.00 0.00 3.18
589 663 2.320587 CGCAGCCTGGAGTGAACAC 61.321 63.158 0.00 0.00 0.00 3.32
590 664 1.227943 GCAGCCTGGAGTGAACACA 60.228 57.895 0.00 0.00 0.00 3.72
591 665 1.510480 GCAGCCTGGAGTGAACACAC 61.510 60.000 0.00 0.97 35.07 3.82
618 719 3.084786 GCTAGTCCAAGTTCCATTTGCT 58.915 45.455 0.00 0.00 0.00 3.91
629 730 1.079127 CATTTGCTCGGTCCGTCCT 60.079 57.895 11.88 0.00 0.00 3.85
667 785 1.202580 CCAAAACCAAAATCCACGCCA 60.203 47.619 0.00 0.00 0.00 5.69
687 805 1.065418 AGGAATCGCGAGGATTTGGTT 60.065 47.619 16.66 0.00 45.33 3.67
688 806 1.743394 GGAATCGCGAGGATTTGGTTT 59.257 47.619 16.66 0.00 45.33 3.27
689 807 2.477863 GGAATCGCGAGGATTTGGTTTG 60.478 50.000 16.66 0.00 45.33 2.93
690 808 1.094785 ATCGCGAGGATTTGGTTTGG 58.905 50.000 16.66 0.00 28.32 3.28
691 809 0.250553 TCGCGAGGATTTGGTTTGGT 60.251 50.000 3.71 0.00 0.00 3.67
706 835 0.621862 TTGGTTTGGTTTGGGGGCTT 60.622 50.000 0.00 0.00 0.00 4.35
815 944 1.760086 CAGCACCCAAAACCCACCA 60.760 57.895 0.00 0.00 0.00 4.17
822 951 1.595093 CCAAAACCCACCATCTCCGC 61.595 60.000 0.00 0.00 0.00 5.54
824 953 1.789576 AAAACCCACCATCTCCGCCT 61.790 55.000 0.00 0.00 0.00 5.52
846 975 1.862602 GCACCCGATTTTGAACCGCT 61.863 55.000 0.00 0.00 0.00 5.52
847 976 0.168128 CACCCGATTTTGAACCGCTC 59.832 55.000 0.00 0.00 0.00 5.03
848 977 0.958876 ACCCGATTTTGAACCGCTCC 60.959 55.000 0.00 0.00 0.00 4.70
849 978 1.423845 CCGATTTTGAACCGCTCCG 59.576 57.895 0.00 0.00 0.00 4.63
850 979 1.226018 CGATTTTGAACCGCTCCGC 60.226 57.895 0.00 0.00 0.00 5.54
851 980 1.635663 CGATTTTGAACCGCTCCGCT 61.636 55.000 0.00 0.00 0.00 5.52
852 981 0.097150 GATTTTGAACCGCTCCGCTC 59.903 55.000 0.00 0.00 0.00 5.03
853 982 1.305930 ATTTTGAACCGCTCCGCTCC 61.306 55.000 0.00 0.00 0.00 4.70
854 983 4.735132 TTGAACCGCTCCGCTCCG 62.735 66.667 0.00 0.00 0.00 4.63
903 1034 1.970640 CTTTGGAAGGGTGGGGAAAAG 59.029 52.381 0.00 0.00 0.00 2.27
904 1035 1.236708 TTGGAAGGGTGGGGAAAAGA 58.763 50.000 0.00 0.00 0.00 2.52
908 1039 3.042682 GGAAGGGTGGGGAAAAGAAAAA 58.957 45.455 0.00 0.00 0.00 1.94
909 1040 3.071023 GGAAGGGTGGGGAAAAGAAAAAG 59.929 47.826 0.00 0.00 0.00 2.27
910 1041 2.689658 AGGGTGGGGAAAAGAAAAAGG 58.310 47.619 0.00 0.00 0.00 3.11
911 1042 1.697432 GGGTGGGGAAAAGAAAAAGGG 59.303 52.381 0.00 0.00 0.00 3.95
912 1043 1.071699 GGTGGGGAAAAGAAAAAGGGC 59.928 52.381 0.00 0.00 0.00 5.19
913 1044 1.044611 TGGGGAAAAGAAAAAGGGCG 58.955 50.000 0.00 0.00 0.00 6.13
914 1045 1.334160 GGGGAAAAGAAAAAGGGCGA 58.666 50.000 0.00 0.00 0.00 5.54
915 1046 1.272490 GGGGAAAAGAAAAAGGGCGAG 59.728 52.381 0.00 0.00 0.00 5.03
916 1047 1.272490 GGGAAAAGAAAAAGGGCGAGG 59.728 52.381 0.00 0.00 0.00 4.63
917 1048 1.272490 GGAAAAGAAAAAGGGCGAGGG 59.728 52.381 0.00 0.00 0.00 4.30
920 1051 3.440415 GAAAAAGGGCGAGGGGCG 61.440 66.667 0.00 0.00 44.92 6.13
1072 1203 2.283966 CCCCGAGGTGAGTGGAGT 60.284 66.667 0.00 0.00 0.00 3.85
1073 1204 2.650116 CCCCGAGGTGAGTGGAGTG 61.650 68.421 0.00 0.00 0.00 3.51
1074 1205 2.650116 CCCGAGGTGAGTGGAGTGG 61.650 68.421 0.00 0.00 0.00 4.00
1075 1206 2.650116 CCGAGGTGAGTGGAGTGGG 61.650 68.421 0.00 0.00 0.00 4.61
1076 1207 2.665603 GAGGTGAGTGGAGTGGGC 59.334 66.667 0.00 0.00 0.00 5.36
1077 1208 3.302347 GAGGTGAGTGGAGTGGGCG 62.302 68.421 0.00 0.00 0.00 6.13
1097 1228 3.470888 CGCGGGGGATTCCAGTCT 61.471 66.667 4.80 0.00 37.22 3.24
1098 1229 2.190578 GCGGGGGATTCCAGTCTG 59.809 66.667 4.80 0.00 37.22 3.51
1099 1230 2.911143 CGGGGGATTCCAGTCTGG 59.089 66.667 13.21 13.21 39.43 3.86
1700 1847 4.135153 CTCAGGCACGTCCTCCGG 62.135 72.222 0.00 0.00 45.52 5.14
1796 1943 2.430610 GCTGAGCGAGGACAGGGAT 61.431 63.158 0.00 0.00 35.05 3.85
1943 2090 1.299850 CGTCGTCTGCACCTTGACA 60.300 57.895 4.88 0.00 33.18 3.58
2033 2180 4.023707 CCTCTCGCAGTTTCTTGTTCAATT 60.024 41.667 0.00 0.00 0.00 2.32
2045 2192 8.567948 GTTTCTTGTTCAATTGATCTACAGGAA 58.432 33.333 22.47 22.47 34.40 3.36
2058 2210 9.658799 TTGATCTACAGGAAATTTGTTCTAGAG 57.341 33.333 0.00 0.00 0.00 2.43
2073 2225 2.124507 TAGAGCAGGTTGTGTGCCCC 62.125 60.000 0.00 0.00 42.24 5.80
2081 2233 0.167251 GTTGTGTGCCCCGTATTTCG 59.833 55.000 0.00 0.00 39.52 3.46
2098 2250 2.032680 TCGGGGAGCTTTAAATTCCG 57.967 50.000 10.93 9.36 37.61 4.30
2106 2258 4.437524 GGAGCTTTAAATTCCGCTCTTGAC 60.438 45.833 20.27 6.37 46.04 3.18
2108 2260 3.120304 GCTTTAAATTCCGCTCTTGACGT 60.120 43.478 0.00 0.00 0.00 4.34
2139 2294 2.347731 GGGCTTCCTAGACGTTTCTTG 58.652 52.381 0.00 0.00 32.75 3.02
2157 2312 0.899717 TGGCCCTTCCAATCTGTTGC 60.900 55.000 0.00 0.00 43.21 4.17
2160 2315 0.040204 CCCTTCCAATCTGTTGCCCT 59.960 55.000 0.00 0.00 33.90 5.19
2171 2326 2.375174 TCTGTTGCCCTCATTGGTTACT 59.625 45.455 0.00 0.00 0.00 2.24
2175 2330 2.265367 TGCCCTCATTGGTTACTCTGA 58.735 47.619 0.00 0.00 0.00 3.27
2219 2378 4.585879 TCTTATGGTTGGCTCCAAACTAC 58.414 43.478 16.71 0.00 43.51 2.73
2243 2402 1.858458 GAGCGGGCAAAAAGTTCAAAC 59.142 47.619 0.00 0.00 0.00 2.93
2264 2423 1.004745 GGGATCAGCTTTTCCCTGTCA 59.995 52.381 19.53 0.00 46.91 3.58
2276 2438 3.582998 TCCCTGTCATGAAATGGGATC 57.417 47.619 21.08 0.00 46.73 3.36
2278 2440 3.464456 TCCCTGTCATGAAATGGGATCAT 59.536 43.478 21.08 0.00 46.73 2.45
2301 2463 4.516321 TGTTTCACCTCAATCACATCACAG 59.484 41.667 0.00 0.00 0.00 3.66
2302 2464 3.339253 TCACCTCAATCACATCACAGG 57.661 47.619 0.00 0.00 0.00 4.00
2303 2465 1.741706 CACCTCAATCACATCACAGGC 59.258 52.381 0.00 0.00 0.00 4.85
2304 2466 1.352017 ACCTCAATCACATCACAGGCA 59.648 47.619 0.00 0.00 0.00 4.75
2305 2467 1.741706 CCTCAATCACATCACAGGCAC 59.258 52.381 0.00 0.00 0.00 5.01
2306 2468 2.617276 CCTCAATCACATCACAGGCACT 60.617 50.000 0.00 0.00 43.88 4.40
2388 2561 5.382618 AATGTTCATCTCCTGCAAGAAAC 57.617 39.130 0.00 0.00 34.07 2.78
2408 2581 8.641498 AGAAACAATTCAGATTACTCCATGTT 57.359 30.769 0.00 0.00 38.06 2.71
2456 2633 4.594854 TTGGCTTGGGCGCAGGAA 62.595 61.111 17.41 0.00 39.81 3.36
2466 2643 1.475034 GGGCGCAGGAATTCTACATCA 60.475 52.381 10.83 0.00 0.00 3.07
2523 2700 2.124151 GGCAGCGGGTGATCCAAT 60.124 61.111 12.03 0.00 34.36 3.16
2599 2776 6.323225 CCAATTGAATATCTCCTTTCCTTGCT 59.677 38.462 7.12 0.00 0.00 3.91
2647 2824 3.797353 CACCCGATCCCCCACCAG 61.797 72.222 0.00 0.00 0.00 4.00
2648 2825 4.019513 ACCCGATCCCCCACCAGA 62.020 66.667 0.00 0.00 0.00 3.86
2699 2876 2.622011 GCCATGTGTTCGGCCGAAA 61.622 57.895 40.13 26.48 42.82 3.46
2703 2880 1.520600 ATGTGTTCGGCCGAAAACCC 61.521 55.000 43.35 31.04 40.62 4.11
2704 2881 2.595172 TGTTCGGCCGAAAACCCC 60.595 61.111 40.13 27.26 35.75 4.95
2705 2882 2.595172 GTTCGGCCGAAAACCCCA 60.595 61.111 40.13 16.34 35.75 4.96
2706 2883 2.595172 TTCGGCCGAAAACCCCAC 60.595 61.111 37.13 0.00 0.00 4.61
2707 2884 4.646877 TCGGCCGAAAACCCCACC 62.647 66.667 28.99 0.00 0.00 4.61
2730 2907 1.008767 CCGACTAACGCGATCCTCC 60.009 63.158 15.93 0.00 41.07 4.30
2731 2908 1.445716 CCGACTAACGCGATCCTCCT 61.446 60.000 15.93 0.00 41.07 3.69
2732 2909 0.041135 CGACTAACGCGATCCTCCTC 60.041 60.000 15.93 0.00 34.51 3.71
2733 2910 1.310904 GACTAACGCGATCCTCCTCT 58.689 55.000 15.93 0.00 0.00 3.69
2849 3030 2.994995 ACGCCGAGATCACCACCA 60.995 61.111 0.00 0.00 0.00 4.17
3138 3328 4.129737 CGTGTCGGACGGGATGCT 62.130 66.667 3.34 0.00 44.85 3.79
3242 3456 1.569479 GCAGACACGAGGAAGTTGCC 61.569 60.000 0.00 0.00 0.00 4.52
3321 3535 9.362539 CCGATGTAAATAGGGTTGTACATATAC 57.637 37.037 0.00 0.00 37.32 1.47
3360 3579 5.306160 AGTGCTTTAGTAGTTCCTTGTACCA 59.694 40.000 0.00 0.00 0.00 3.25
3362 3581 5.176592 GCTTTAGTAGTTCCTTGTACCAGG 58.823 45.833 6.66 6.66 34.86 4.45
3410 3630 7.012327 AGCAAATTAAGCTGCTGATATCGTAAA 59.988 33.333 1.35 0.00 46.97 2.01
3458 3678 5.653507 TGAAAATCATATGTGGAAAGCTGC 58.346 37.500 1.90 0.00 0.00 5.25
3461 3681 1.284491 TCATATGTGGAAAGCTGCCCA 59.716 47.619 1.90 3.40 0.00 5.36
3462 3682 2.091720 TCATATGTGGAAAGCTGCCCAT 60.092 45.455 10.15 11.09 34.58 4.00
3463 3683 3.138098 TCATATGTGGAAAGCTGCCCATA 59.862 43.478 10.15 12.51 34.58 2.74
3464 3684 2.761786 ATGTGGAAAGCTGCCCATAT 57.238 45.000 10.15 10.06 34.58 1.78
3465 3685 3.882102 ATGTGGAAAGCTGCCCATATA 57.118 42.857 13.01 4.24 33.36 0.86
3469 3699 4.961730 TGTGGAAAGCTGCCCATATAAAAT 59.038 37.500 10.15 0.00 34.58 1.82
3496 3891 6.499172 TGTCGAGTTGTATGAATTTTGCAAA 58.501 32.000 8.05 8.05 0.00 3.68
3497 3892 7.144661 TGTCGAGTTGTATGAATTTTGCAAAT 58.855 30.769 13.65 0.00 0.00 2.32
3501 3896 8.486383 CGAGTTGTATGAATTTTGCAAATTTGA 58.514 29.630 22.31 14.50 0.00 2.69
3508 3903 8.844441 ATGAATTTTGCAAATTTGAGTGTTTG 57.156 26.923 22.31 0.00 38.13 2.93
3512 3907 6.566197 TTTGCAAATTTGAGTGTTTGGTTT 57.434 29.167 22.31 0.00 36.19 3.27
3515 3910 5.289675 TGCAAATTTGAGTGTTTGGTTTACG 59.710 36.000 22.31 0.00 36.19 3.18
3523 3918 4.329392 AGTGTTTGGTTTACGGGAATAGG 58.671 43.478 0.00 0.00 0.00 2.57
3528 3923 6.016108 TGTTTGGTTTACGGGAATAGGAAAAG 60.016 38.462 0.00 0.00 0.00 2.27
3529 3924 4.011698 TGGTTTACGGGAATAGGAAAAGC 58.988 43.478 0.00 0.00 0.00 3.51
3531 3926 4.142534 GGTTTACGGGAATAGGAAAAGCAC 60.143 45.833 0.00 0.00 0.00 4.40
3535 3930 3.244770 ACGGGAATAGGAAAAGCACAAGA 60.245 43.478 0.00 0.00 0.00 3.02
3536 3931 3.756434 CGGGAATAGGAAAAGCACAAGAA 59.244 43.478 0.00 0.00 0.00 2.52
3537 3932 4.399303 CGGGAATAGGAAAAGCACAAGAAT 59.601 41.667 0.00 0.00 0.00 2.40
3538 3933 5.449177 CGGGAATAGGAAAAGCACAAGAATC 60.449 44.000 0.00 0.00 0.00 2.52
3539 3934 5.163509 GGGAATAGGAAAAGCACAAGAATCC 60.164 44.000 0.00 0.00 0.00 3.01
3540 3935 5.654209 GGAATAGGAAAAGCACAAGAATCCT 59.346 40.000 0.00 0.00 40.30 3.24
3541 3936 6.828785 GGAATAGGAAAAGCACAAGAATCCTA 59.171 38.462 2.14 2.14 42.12 2.94
3542 3937 7.503902 GGAATAGGAAAAGCACAAGAATCCTAT 59.496 37.037 6.37 6.37 46.86 2.57
3543 3938 9.561069 GAATAGGAAAAGCACAAGAATCCTATA 57.439 33.333 11.41 0.00 45.13 1.31
3544 3939 9.920946 AATAGGAAAAGCACAAGAATCCTATAA 57.079 29.630 11.41 0.00 45.13 0.98
3547 3942 9.566432 AGGAAAAGCACAAGAATCCTATAATAG 57.434 33.333 0.00 0.00 35.59 1.73
3548 3943 9.561069 GGAAAAGCACAAGAATCCTATAATAGA 57.439 33.333 0.00 0.00 0.00 1.98
3591 4027 9.151471 CCTAATAAAGAGACTCAAAACGAATCA 57.849 33.333 5.02 0.00 0.00 2.57
3605 4041 6.826893 AAACGAATCAAACCACATGAAAAG 57.173 33.333 0.00 0.00 0.00 2.27
3607 4043 6.331369 ACGAATCAAACCACATGAAAAGAT 57.669 33.333 0.00 0.00 0.00 2.40
3609 4045 7.305474 ACGAATCAAACCACATGAAAAGATAC 58.695 34.615 0.00 0.00 0.00 2.24
3610 4046 7.174946 ACGAATCAAACCACATGAAAAGATACT 59.825 33.333 0.00 0.00 0.00 2.12
3645 4081 5.730296 TTATGCTACTAAGGATCTCAGCC 57.270 43.478 0.00 0.00 35.16 4.85
3646 4082 3.320610 TGCTACTAAGGATCTCAGCCT 57.679 47.619 0.00 0.00 37.35 4.58
3647 4083 4.455070 TGCTACTAAGGATCTCAGCCTA 57.545 45.455 0.00 0.00 33.76 3.93
3649 4085 4.769488 TGCTACTAAGGATCTCAGCCTATG 59.231 45.833 0.00 0.00 33.76 2.23
3650 4086 4.381505 GCTACTAAGGATCTCAGCCTATGC 60.382 50.000 0.00 0.00 33.76 3.14
3651 4087 2.560542 ACTAAGGATCTCAGCCTATGCG 59.439 50.000 0.00 0.00 44.33 4.73
3653 4089 2.294449 AGGATCTCAGCCTATGCGTA 57.706 50.000 0.00 0.00 44.33 4.42
3654 4090 2.166829 AGGATCTCAGCCTATGCGTAG 58.833 52.381 5.93 5.93 44.33 3.51
3655 4091 2.163509 GGATCTCAGCCTATGCGTAGA 58.836 52.381 14.79 0.00 44.33 2.59
3656 4092 2.558795 GGATCTCAGCCTATGCGTAGAA 59.441 50.000 14.79 0.00 44.33 2.10
3657 4093 3.005897 GGATCTCAGCCTATGCGTAGAAA 59.994 47.826 14.79 0.00 44.33 2.52
3659 4095 4.672587 TCTCAGCCTATGCGTAGAAATT 57.327 40.909 14.79 0.00 44.33 1.82
3660 4096 5.023533 TCTCAGCCTATGCGTAGAAATTT 57.976 39.130 14.79 0.00 44.33 1.82
3661 4097 4.811024 TCTCAGCCTATGCGTAGAAATTTG 59.189 41.667 14.79 5.42 44.33 2.32
3662 4098 4.765273 TCAGCCTATGCGTAGAAATTTGA 58.235 39.130 14.79 7.43 44.33 2.69
3663 4099 5.182487 TCAGCCTATGCGTAGAAATTTGAA 58.818 37.500 14.79 0.00 44.33 2.69
3664 4100 5.645929 TCAGCCTATGCGTAGAAATTTGAAA 59.354 36.000 14.79 0.00 44.33 2.69
3665 4101 6.150307 TCAGCCTATGCGTAGAAATTTGAAAA 59.850 34.615 14.79 0.00 44.33 2.29
3666 4102 6.806249 CAGCCTATGCGTAGAAATTTGAAAAA 59.194 34.615 14.79 0.00 44.33 1.94
3667 4103 7.008628 CAGCCTATGCGTAGAAATTTGAAAAAG 59.991 37.037 14.79 0.00 44.33 2.27
3668 4104 7.027161 GCCTATGCGTAGAAATTTGAAAAAGA 58.973 34.615 14.79 0.00 0.00 2.52
3669 4105 7.218963 GCCTATGCGTAGAAATTTGAAAAAGAG 59.781 37.037 14.79 0.00 0.00 2.85
3670 4106 7.698130 CCTATGCGTAGAAATTTGAAAAAGAGG 59.302 37.037 14.79 0.00 0.00 3.69
3671 4107 6.385649 TGCGTAGAAATTTGAAAAAGAGGT 57.614 33.333 0.00 0.00 0.00 3.85
3672 4108 6.801575 TGCGTAGAAATTTGAAAAAGAGGTT 58.198 32.000 0.00 0.00 0.00 3.50
3673 4109 6.915843 TGCGTAGAAATTTGAAAAAGAGGTTC 59.084 34.615 0.00 0.00 0.00 3.62
3674 4110 6.362551 GCGTAGAAATTTGAAAAAGAGGTTCC 59.637 38.462 0.00 0.00 0.00 3.62
3675 4111 7.422399 CGTAGAAATTTGAAAAAGAGGTTCCA 58.578 34.615 0.00 0.00 0.00 3.53
3676 4112 7.591426 CGTAGAAATTTGAAAAAGAGGTTCCAG 59.409 37.037 0.00 0.00 0.00 3.86
3683 4119 4.827284 TGAAAAAGAGGTTCCAGTGGATTC 59.173 41.667 14.00 11.45 0.00 2.52
3684 4120 4.731313 AAAAGAGGTTCCAGTGGATTCT 57.269 40.909 14.00 13.32 0.00 2.40
3689 4125 6.394345 AGAGGTTCCAGTGGATTCTAAAAT 57.606 37.500 14.00 0.00 0.00 1.82
3690 4126 6.794534 AGAGGTTCCAGTGGATTCTAAAATT 58.205 36.000 14.00 0.00 0.00 1.82
3691 4127 6.887002 AGAGGTTCCAGTGGATTCTAAAATTC 59.113 38.462 14.00 1.45 0.00 2.17
3692 4128 6.552008 AGGTTCCAGTGGATTCTAAAATTCA 58.448 36.000 14.00 0.00 0.00 2.57
3694 4130 7.123247 AGGTTCCAGTGGATTCTAAAATTCATG 59.877 37.037 14.00 0.00 32.91 3.07
3695 4131 7.122650 GGTTCCAGTGGATTCTAAAATTCATGA 59.877 37.037 14.00 0.00 32.91 3.07
3696 4132 8.689972 GTTCCAGTGGATTCTAAAATTCATGAT 58.310 33.333 14.00 0.00 32.91 2.45
3697 4133 8.827832 TCCAGTGGATTCTAAAATTCATGATT 57.172 30.769 8.12 0.00 32.91 2.57
3698 4134 9.258629 TCCAGTGGATTCTAAAATTCATGATTT 57.741 29.630 8.12 0.00 39.63 2.17
3729 4165 4.157840 TCTGAAACCGATCGAGATCAAAGA 59.842 41.667 18.66 8.83 37.69 2.52
3736 4172 6.776094 ACCGATCGAGATCAAAGAAAAATTC 58.224 36.000 18.66 0.00 37.69 2.17
3739 4175 5.545658 TCGAGATCAAAGAAAAATTCCCG 57.454 39.130 0.00 0.00 0.00 5.14
3741 4177 5.121768 TCGAGATCAAAGAAAAATTCCCGTC 59.878 40.000 0.00 0.00 0.00 4.79
3742 4178 5.106712 CGAGATCAAAGAAAAATTCCCGTCA 60.107 40.000 0.00 0.00 0.00 4.35
3745 4181 5.845391 TCAAAGAAAAATTCCCGTCACTT 57.155 34.783 0.00 0.00 0.00 3.16
3746 4182 6.215495 TCAAAGAAAAATTCCCGTCACTTT 57.785 33.333 0.00 0.00 0.00 2.66
3747 4183 6.635755 TCAAAGAAAAATTCCCGTCACTTTT 58.364 32.000 0.00 0.00 0.00 2.27
3748 4184 6.754675 TCAAAGAAAAATTCCCGTCACTTTTC 59.245 34.615 0.00 0.00 36.63 2.29
3749 4185 6.465439 AAGAAAAATTCCCGTCACTTTTCT 57.535 33.333 2.99 2.99 44.26 2.52
3750 4186 6.465439 AGAAAAATTCCCGTCACTTTTCTT 57.535 33.333 2.99 0.00 41.31 2.52
3753 4189 6.902224 AAAATTCCCGTCACTTTTCTTTTG 57.098 33.333 0.00 0.00 0.00 2.44
3754 4190 5.845391 AATTCCCGTCACTTTTCTTTTGA 57.155 34.783 0.00 0.00 0.00 2.69
3756 4192 4.625972 TCCCGTCACTTTTCTTTTGAAC 57.374 40.909 0.00 0.00 38.30 3.18
3757 4193 4.011023 TCCCGTCACTTTTCTTTTGAACA 58.989 39.130 0.00 0.00 38.30 3.18
3758 4194 4.459685 TCCCGTCACTTTTCTTTTGAACAA 59.540 37.500 0.00 0.00 38.30 2.83
3759 4195 5.047943 TCCCGTCACTTTTCTTTTGAACAAA 60.048 36.000 0.00 0.00 38.30 2.83
3760 4196 5.635700 CCCGTCACTTTTCTTTTGAACAAAA 59.364 36.000 11.35 11.35 38.30 2.44
3762 4198 7.172757 CCGTCACTTTTCTTTTGAACAAAATG 58.827 34.615 12.11 7.61 39.29 2.32
3764 4200 8.103924 CGTCACTTTTCTTTTGAACAAAATGAG 58.896 33.333 12.11 10.10 39.29 2.90
3765 4201 7.899841 GTCACTTTTCTTTTGAACAAAATGAGC 59.100 33.333 12.11 5.25 39.29 4.26
3766 4202 7.064490 TCACTTTTCTTTTGAACAAAATGAGCC 59.936 33.333 12.11 0.00 39.29 4.70
3767 4203 6.316140 ACTTTTCTTTTGAACAAAATGAGCCC 59.684 34.615 12.11 0.00 39.29 5.19
3769 4205 5.612725 TCTTTTGAACAAAATGAGCCCTT 57.387 34.783 12.11 0.00 39.29 3.95
3771 4207 7.118496 TCTTTTGAACAAAATGAGCCCTTAA 57.882 32.000 12.11 0.00 39.29 1.85
3772 4208 7.560368 TCTTTTGAACAAAATGAGCCCTTAAA 58.440 30.769 12.11 0.00 39.29 1.52
3773 4209 8.043710 TCTTTTGAACAAAATGAGCCCTTAAAA 58.956 29.630 12.11 0.00 39.29 1.52
3774 4210 7.784633 TTTGAACAAAATGAGCCCTTAAAAG 57.215 32.000 0.00 0.00 0.00 2.27
3775 4211 6.723298 TGAACAAAATGAGCCCTTAAAAGA 57.277 33.333 0.00 0.00 0.00 2.52
3776 4212 6.748132 TGAACAAAATGAGCCCTTAAAAGAG 58.252 36.000 0.00 0.00 0.00 2.85
3777 4213 5.139435 ACAAAATGAGCCCTTAAAAGAGC 57.861 39.130 0.00 0.00 0.00 4.09
3778 4214 4.588528 ACAAAATGAGCCCTTAAAAGAGCA 59.411 37.500 0.00 0.00 31.42 4.26
3782 4227 6.705863 AATGAGCCCTTAAAAGAGCAATAG 57.294 37.500 0.00 0.00 31.42 1.73
3817 4262 2.749076 TGCTATGTTTGCAGGTGCTTAG 59.251 45.455 3.18 0.00 42.66 2.18
3818 4263 2.478539 GCTATGTTTGCAGGTGCTTAGC 60.479 50.000 3.18 0.00 42.66 3.09
3819 4264 0.890683 ATGTTTGCAGGTGCTTAGCC 59.109 50.000 0.29 0.00 42.66 3.93
3821 4266 1.228124 TTTGCAGGTGCTTAGCCGT 60.228 52.632 0.29 0.00 42.66 5.68
3822 4267 0.035598 TTTGCAGGTGCTTAGCCGTA 59.964 50.000 0.29 0.00 42.66 4.02
3826 4849 1.927895 CAGGTGCTTAGCCGTAAGAG 58.072 55.000 0.29 0.00 38.39 2.85
3840 4863 2.606795 CGTAAGAGCAGAGCTAGCCATC 60.607 54.545 12.13 3.11 39.88 3.51
3846 4869 2.707791 AGCAGAGCTAGCCATCCATAAA 59.292 45.455 12.13 0.00 36.99 1.40
3848 4871 3.062763 CAGAGCTAGCCATCCATAAACG 58.937 50.000 12.13 0.00 0.00 3.60
3849 4872 1.801178 GAGCTAGCCATCCATAAACGC 59.199 52.381 12.13 0.00 0.00 4.84
3851 4874 2.154462 GCTAGCCATCCATAAACGCAT 58.846 47.619 2.29 0.00 0.00 4.73
3853 4876 3.372206 GCTAGCCATCCATAAACGCATAG 59.628 47.826 2.29 0.00 0.00 2.23
3862 4885 0.108567 TAAACGCATAGCTCGTGCCA 60.109 50.000 15.88 0.00 40.36 4.92
3863 4886 1.635663 AAACGCATAGCTCGTGCCAC 61.636 55.000 15.88 0.00 40.36 5.01
3868 4891 3.031417 ATAGCTCGTGCCACACCCC 62.031 63.158 5.73 0.00 40.80 4.95
3882 4905 0.811281 CACCCCGAATCTGAAAAGCC 59.189 55.000 0.00 0.00 0.00 4.35
3884 4907 1.913419 ACCCCGAATCTGAAAAGCCTA 59.087 47.619 0.00 0.00 0.00 3.93
3886 4909 2.092914 CCCCGAATCTGAAAAGCCTACT 60.093 50.000 0.00 0.00 0.00 2.57
3889 4912 4.099573 CCCGAATCTGAAAAGCCTACTAGA 59.900 45.833 0.00 0.00 0.00 2.43
3907 4930 6.718522 ACTAGAGGAATCAAGTAGCTTACC 57.281 41.667 0.00 0.00 0.00 2.85
3909 4932 4.024670 AGAGGAATCAAGTAGCTTACCGT 58.975 43.478 0.00 0.00 0.00 4.83
3911 4934 4.756502 AGGAATCAAGTAGCTTACCGTTC 58.243 43.478 0.00 0.00 0.00 3.95
3912 4935 4.222145 AGGAATCAAGTAGCTTACCGTTCA 59.778 41.667 0.00 0.00 0.00 3.18
3913 4936 5.104900 AGGAATCAAGTAGCTTACCGTTCAT 60.105 40.000 0.00 0.00 0.00 2.57
3914 4937 6.097839 AGGAATCAAGTAGCTTACCGTTCATA 59.902 38.462 0.00 0.00 0.00 2.15
3915 4938 6.929606 GGAATCAAGTAGCTTACCGTTCATAT 59.070 38.462 0.00 0.00 0.00 1.78
3916 4939 8.086522 GGAATCAAGTAGCTTACCGTTCATATA 58.913 37.037 0.00 0.00 0.00 0.86
3917 4940 9.472361 GAATCAAGTAGCTTACCGTTCATATAA 57.528 33.333 0.00 0.00 0.00 0.98
3918 4941 9.998106 AATCAAGTAGCTTACCGTTCATATAAT 57.002 29.630 0.00 0.00 0.00 1.28
3942 4973 2.028130 ACCGGACATTTCAAACTGCAA 58.972 42.857 9.46 0.00 0.00 4.08
3948 4979 3.052036 ACATTTCAAACTGCAATGACGC 58.948 40.909 6.11 0.00 33.77 5.19
3950 4981 1.028130 TTCAAACTGCAATGACGCCA 58.972 45.000 0.00 0.00 0.00 5.69
3954 4985 0.311790 AACTGCAATGACGCCACAAG 59.688 50.000 0.00 0.00 0.00 3.16
3959 4990 2.035704 TGCAATGACGCCACAAGATTTT 59.964 40.909 0.00 0.00 0.00 1.82
3962 4993 4.297510 CAATGACGCCACAAGATTTTCAA 58.702 39.130 0.00 0.00 0.00 2.69
3965 4996 1.000274 ACGCCACAAGATTTTCAAGGC 60.000 47.619 0.00 0.00 37.32 4.35
4014 5045 8.488651 AACCTATAAAATCCTAAACGTCACAG 57.511 34.615 0.00 0.00 0.00 3.66
4027 5058 1.470805 CGTCACAGACCGGCATTATGA 60.471 52.381 0.00 0.00 0.00 2.15
4061 5092 7.978099 ATGTAGGCCAAAAGGAAGATTAATT 57.022 32.000 5.01 0.00 0.00 1.40
4062 5093 7.169158 TGTAGGCCAAAAGGAAGATTAATTG 57.831 36.000 5.01 0.00 0.00 2.32
4063 5094 6.723977 TGTAGGCCAAAAGGAAGATTAATTGT 59.276 34.615 5.01 0.00 0.00 2.71
4064 5095 6.686484 AGGCCAAAAGGAAGATTAATTGTT 57.314 33.333 5.01 0.00 0.00 2.83
4065 5096 6.466812 AGGCCAAAAGGAAGATTAATTGTTG 58.533 36.000 5.01 0.00 0.00 3.33
4066 5097 6.269769 AGGCCAAAAGGAAGATTAATTGTTGA 59.730 34.615 5.01 0.00 0.00 3.18
4067 5098 6.591448 GGCCAAAAGGAAGATTAATTGTTGAG 59.409 38.462 0.00 0.00 0.00 3.02
4068 5099 7.154656 GCCAAAAGGAAGATTAATTGTTGAGT 58.845 34.615 0.00 0.00 0.00 3.41
4069 5100 8.303876 GCCAAAAGGAAGATTAATTGTTGAGTA 58.696 33.333 0.00 0.00 0.00 2.59
4076 5107 9.952188 GGAAGATTAATTGTTGAGTAAATAGGC 57.048 33.333 0.00 0.00 0.00 3.93
4084 5115 9.860898 AATTGTTGAGTAAATAGGCAATTTCTC 57.139 29.630 0.00 7.49 38.71 2.87
4085 5116 7.072177 TGTTGAGTAAATAGGCAATTTCTCG 57.928 36.000 0.00 0.00 38.71 4.04
4086 5117 6.876789 TGTTGAGTAAATAGGCAATTTCTCGA 59.123 34.615 0.00 5.03 38.71 4.04
4087 5118 7.552687 TGTTGAGTAAATAGGCAATTTCTCGAT 59.447 33.333 0.00 0.00 38.71 3.59
4088 5119 8.398665 GTTGAGTAAATAGGCAATTTCTCGATT 58.601 33.333 0.00 0.00 38.71 3.34
4089 5120 9.607988 TTGAGTAAATAGGCAATTTCTCGATTA 57.392 29.630 0.00 0.00 38.71 1.75
4090 5121 9.607988 TGAGTAAATAGGCAATTTCTCGATTAA 57.392 29.630 0.00 0.00 38.71 1.40
4099 5130 8.912988 AGGCAATTTCTCGATTAAATTAATCCA 58.087 29.630 17.23 6.53 41.10 3.41
4100 5131 9.696917 GGCAATTTCTCGATTAAATTAATCCAT 57.303 29.630 17.23 2.98 41.10 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 1.266989 CGGAACAGTGGAAAAGAAGGC 59.733 52.381 0.00 0.00 0.00 4.35
28 35 2.225727 GGTTAGCGGAACAGTGGAAAAG 59.774 50.000 6.83 0.00 40.09 2.27
30 37 1.543871 GGGTTAGCGGAACAGTGGAAA 60.544 52.381 6.83 0.00 40.09 3.13
31 38 0.035739 GGGTTAGCGGAACAGTGGAA 59.964 55.000 6.83 0.00 40.09 3.53
33 40 1.376812 GGGGTTAGCGGAACAGTGG 60.377 63.158 6.83 0.00 40.09 4.00
45 52 0.417035 TACGGGAGGGAAAGGGGTTA 59.583 55.000 0.00 0.00 0.00 2.85
48 55 1.002533 TCTACGGGAGGGAAAGGGG 59.997 63.158 0.00 0.00 0.00 4.79
101 108 2.548787 CATCAACGCAACGCACGA 59.451 55.556 0.00 0.00 0.00 4.35
171 220 5.242615 CCATCAGCTCAGCTATGTAGAGTAA 59.757 44.000 0.00 0.00 36.40 2.24
188 237 1.340248 CTGCATTCCCATTCCATCAGC 59.660 52.381 0.00 0.00 0.00 4.26
189 238 2.621998 GTCTGCATTCCCATTCCATCAG 59.378 50.000 0.00 0.00 0.00 2.90
190 239 2.658285 GTCTGCATTCCCATTCCATCA 58.342 47.619 0.00 0.00 0.00 3.07
191 240 1.605710 CGTCTGCATTCCCATTCCATC 59.394 52.381 0.00 0.00 0.00 3.51
206 255 0.994995 CCGAAATGCTGACTCGTCTG 59.005 55.000 0.00 0.00 0.00 3.51
207 256 0.737715 GCCGAAATGCTGACTCGTCT 60.738 55.000 0.00 0.00 0.00 4.18
246 295 7.223971 CCATCGAAGAATAGACCGAAAACATTA 59.776 37.037 0.00 0.00 43.58 1.90
429 495 2.019951 CCAGTCACCACGTACGCAC 61.020 63.158 16.72 4.55 0.00 5.34
430 496 2.337170 CCAGTCACCACGTACGCA 59.663 61.111 16.72 0.00 0.00 5.24
471 542 3.394836 GAAGAGGCAGGCTCGGGT 61.395 66.667 17.90 7.87 0.00 5.28
476 547 3.710722 CGTGGGAAGAGGCAGGCT 61.711 66.667 0.00 0.00 0.00 4.58
508 579 4.437587 AGATCCCCGACCGACCGT 62.438 66.667 0.00 0.00 0.00 4.83
524 598 1.702957 TGTGGGGAGGTTTTGTAGGAG 59.297 52.381 0.00 0.00 0.00 3.69
562 636 0.960364 TCCAGGCTGCGGATGAAAAC 60.960 55.000 9.56 0.00 0.00 2.43
563 637 0.677731 CTCCAGGCTGCGGATGAAAA 60.678 55.000 9.56 0.00 0.00 2.29
565 639 2.293318 ACTCCAGGCTGCGGATGAA 61.293 57.895 9.56 0.00 0.00 2.57
567 641 2.513204 CACTCCAGGCTGCGGATG 60.513 66.667 9.56 0.30 0.00 3.51
568 642 2.293318 TTCACTCCAGGCTGCGGAT 61.293 57.895 9.56 0.00 0.00 4.18
570 644 2.743928 GTTCACTCCAGGCTGCGG 60.744 66.667 9.56 6.19 0.00 5.69
572 646 1.227943 TGTGTTCACTCCAGGCTGC 60.228 57.895 9.56 0.00 0.00 5.25
573 647 0.886490 GGTGTGTTCACTCCAGGCTG 60.886 60.000 7.75 7.75 43.41 4.85
574 648 1.344953 TGGTGTGTTCACTCCAGGCT 61.345 55.000 18.69 0.00 43.41 4.58
575 649 0.886490 CTGGTGTGTTCACTCCAGGC 60.886 60.000 30.38 8.33 43.72 4.85
576 650 3.312404 CTGGTGTGTTCACTCCAGG 57.688 57.895 30.38 19.19 43.72 4.45
578 652 0.104120 CGACTGGTGTGTTCACTCCA 59.896 55.000 20.50 20.50 43.41 3.86
579 653 1.222115 GCGACTGGTGTGTTCACTCC 61.222 60.000 14.65 14.65 43.41 3.85
580 654 0.249489 AGCGACTGGTGTGTTCACTC 60.249 55.000 4.59 0.91 43.41 3.51
581 655 1.000163 CTAGCGACTGGTGTGTTCACT 60.000 52.381 4.59 0.00 43.41 3.41
582 656 1.269621 ACTAGCGACTGGTGTGTTCAC 60.270 52.381 0.00 0.00 43.19 3.18
583 657 1.000607 GACTAGCGACTGGTGTGTTCA 60.001 52.381 0.98 0.00 0.00 3.18
584 658 1.669211 GGACTAGCGACTGGTGTGTTC 60.669 57.143 0.98 0.00 0.00 3.18
585 659 0.317479 GGACTAGCGACTGGTGTGTT 59.683 55.000 0.98 0.00 0.00 3.32
586 660 0.826256 TGGACTAGCGACTGGTGTGT 60.826 55.000 0.98 0.00 0.00 3.72
587 661 0.317160 TTGGACTAGCGACTGGTGTG 59.683 55.000 0.98 0.00 0.00 3.82
588 662 0.603569 CTTGGACTAGCGACTGGTGT 59.396 55.000 0.98 0.00 0.00 4.16
589 663 0.603569 ACTTGGACTAGCGACTGGTG 59.396 55.000 0.98 0.00 0.00 4.17
590 664 1.272769 GAACTTGGACTAGCGACTGGT 59.727 52.381 0.00 0.00 0.00 4.00
591 665 1.404315 GGAACTTGGACTAGCGACTGG 60.404 57.143 0.00 0.00 0.00 4.00
637 754 0.551879 TTGGTTTTGGTTCCCGGAGA 59.448 50.000 0.73 0.00 0.00 3.71
667 785 0.541863 ACCAAATCCTCGCGATTCCT 59.458 50.000 10.36 0.00 40.47 3.36
687 805 0.621862 AAGCCCCCAAACCAAACCAA 60.622 50.000 0.00 0.00 0.00 3.67
688 806 1.003573 AAGCCCCCAAACCAAACCA 59.996 52.632 0.00 0.00 0.00 3.67
689 807 1.051556 TCAAGCCCCCAAACCAAACC 61.052 55.000 0.00 0.00 0.00 3.27
690 808 1.055849 ATCAAGCCCCCAAACCAAAC 58.944 50.000 0.00 0.00 0.00 2.93
691 809 1.813102 AATCAAGCCCCCAAACCAAA 58.187 45.000 0.00 0.00 0.00 3.28
706 835 1.611519 AAAACGGGCGGAGAAAATCA 58.388 45.000 0.00 0.00 0.00 2.57
796 925 2.421314 GTGGGTTTTGGGTGCTGC 59.579 61.111 0.00 0.00 0.00 5.25
798 927 0.831711 GATGGTGGGTTTTGGGTGCT 60.832 55.000 0.00 0.00 0.00 4.40
801 930 0.114364 GGAGATGGTGGGTTTTGGGT 59.886 55.000 0.00 0.00 0.00 4.51
822 951 0.958382 TTCAAAATCGGGTGCGGAGG 60.958 55.000 0.00 0.00 0.00 4.30
824 953 1.238625 GGTTCAAAATCGGGTGCGGA 61.239 55.000 0.00 0.00 0.00 5.54
850 979 3.783362 TTGGGTTGGGTGTGCGGAG 62.783 63.158 0.00 0.00 0.00 4.63
851 980 3.360423 TTTGGGTTGGGTGTGCGGA 62.360 57.895 0.00 0.00 0.00 5.54
852 981 2.835431 TTTGGGTTGGGTGTGCGG 60.835 61.111 0.00 0.00 0.00 5.69
853 982 2.415426 GTTTGGGTTGGGTGTGCG 59.585 61.111 0.00 0.00 0.00 5.34
854 983 1.334384 AAGGTTTGGGTTGGGTGTGC 61.334 55.000 0.00 0.00 0.00 4.57
855 984 0.750249 GAAGGTTTGGGTTGGGTGTG 59.250 55.000 0.00 0.00 0.00 3.82
856 985 0.397957 GGAAGGTTTGGGTTGGGTGT 60.398 55.000 0.00 0.00 0.00 4.16
903 1034 3.440415 CGCCCCTCGCCCTTTTTC 61.440 66.667 0.00 0.00 0.00 2.29
940 1071 2.914310 TTTCCTTCCTTCCCCGGGC 61.914 63.158 17.73 0.00 0.00 6.13
941 1072 1.001269 GTTTCCTTCCTTCCCCGGG 60.001 63.158 15.80 15.80 0.00 5.73
942 1073 1.376812 CGTTTCCTTCCTTCCCCGG 60.377 63.158 0.00 0.00 0.00 5.73
943 1074 1.376812 CCGTTTCCTTCCTTCCCCG 60.377 63.158 0.00 0.00 0.00 5.73
944 1075 0.402887 TTCCGTTTCCTTCCTTCCCC 59.597 55.000 0.00 0.00 0.00 4.81
945 1076 1.822506 CTTCCGTTTCCTTCCTTCCC 58.177 55.000 0.00 0.00 0.00 3.97
946 1077 1.166129 GCTTCCGTTTCCTTCCTTCC 58.834 55.000 0.00 0.00 0.00 3.46
1080 1211 3.470888 AGACTGGAATCCCCCGCG 61.471 66.667 0.00 0.00 0.00 6.46
1081 1212 2.190578 CAGACTGGAATCCCCCGC 59.809 66.667 0.00 0.00 0.00 6.13
1082 1213 2.911143 CCAGACTGGAATCCCCCG 59.089 66.667 17.22 0.00 40.96 5.73
1083 1214 2.597903 GCCAGACTGGAATCCCCC 59.402 66.667 26.25 1.19 40.96 5.40
1084 1215 2.190578 CGCCAGACTGGAATCCCC 59.809 66.667 26.25 5.07 40.96 4.81
1085 1216 1.153349 GTCGCCAGACTGGAATCCC 60.153 63.158 26.25 5.83 40.96 3.85
1086 1217 4.522971 GTCGCCAGACTGGAATCC 57.477 61.111 26.25 6.22 40.96 3.01
1095 1226 0.599204 GAAAGAACCGTGTCGCCAGA 60.599 55.000 0.00 0.00 0.00 3.86
1096 1227 0.600255 AGAAAGAACCGTGTCGCCAG 60.600 55.000 0.00 0.00 0.00 4.85
1097 1228 0.179067 AAGAAAGAACCGTGTCGCCA 60.179 50.000 0.00 0.00 0.00 5.69
1098 1229 0.234884 CAAGAAAGAACCGTGTCGCC 59.765 55.000 0.00 0.00 0.00 5.54
1099 1230 0.234884 CCAAGAAAGAACCGTGTCGC 59.765 55.000 0.00 0.00 0.00 5.19
1172 1319 4.244463 ACCCCGTTGTCCACCACG 62.244 66.667 0.00 0.00 0.00 4.94
1869 2016 3.766691 CACCACCGAGTACCCCCG 61.767 72.222 0.00 0.00 0.00 5.73
1943 2090 0.178970 ACACCACGTAGTCCAGGTCT 60.179 55.000 0.00 0.00 41.61 3.85
2033 2180 7.766278 GCTCTAGAACAAATTTCCTGTAGATCA 59.234 37.037 0.00 0.00 0.00 2.92
2045 2192 5.009010 CACACAACCTGCTCTAGAACAAATT 59.991 40.000 0.00 0.00 0.00 1.82
2058 2210 3.835790 TACGGGGCACACAACCTGC 62.836 63.158 0.00 0.00 36.57 4.85
2073 2225 5.494632 AATTTAAAGCTCCCCGAAATACG 57.505 39.130 0.00 0.00 42.18 3.06
2081 2233 1.763968 AGCGGAATTTAAAGCTCCCC 58.236 50.000 11.65 5.10 34.48 4.81
2098 2250 0.238553 GGCCAAGAAACGTCAAGAGC 59.761 55.000 0.00 0.00 0.00 4.09
2108 2260 2.282887 GAAGCCCGGGCCAAGAAA 60.283 61.111 41.72 0.00 43.17 2.52
2139 2294 1.607801 GGCAACAGATTGGAAGGGCC 61.608 60.000 0.00 0.00 36.23 5.80
2149 2304 2.610438 AACCAATGAGGGCAACAGAT 57.390 45.000 0.00 0.00 43.89 2.90
2150 2305 2.375174 AGTAACCAATGAGGGCAACAGA 59.625 45.455 0.00 0.00 43.89 3.41
2151 2306 2.749621 GAGTAACCAATGAGGGCAACAG 59.250 50.000 0.00 0.00 43.89 3.16
2152 2307 2.375174 AGAGTAACCAATGAGGGCAACA 59.625 45.455 0.00 0.00 43.89 3.33
2153 2308 2.749621 CAGAGTAACCAATGAGGGCAAC 59.250 50.000 0.00 0.00 43.89 4.17
2154 2309 2.642311 TCAGAGTAACCAATGAGGGCAA 59.358 45.455 0.00 0.00 43.89 4.52
2157 2312 7.775093 TGAATTAATCAGAGTAACCAATGAGGG 59.225 37.037 0.00 0.00 36.04 4.30
2190 2345 3.412386 GAGCCAACCATAAGAACTGTGT 58.588 45.455 0.00 0.00 0.00 3.72
2219 2378 1.515521 AACTTTTTGCCCGCTCGGAG 61.516 55.000 10.28 0.00 37.50 4.63
2264 2423 5.274822 AGGTGAAACATGATCCCATTTCAT 58.725 37.500 14.70 2.55 39.98 2.57
2276 2438 5.048573 TGTGATGTGATTGAGGTGAAACATG 60.049 40.000 0.00 0.00 39.98 3.21
2278 2440 4.459330 TGTGATGTGATTGAGGTGAAACA 58.541 39.130 0.00 0.00 39.98 2.83
2301 2463 5.449107 TTACGAGATATTCCTACAGTGCC 57.551 43.478 0.00 0.00 0.00 5.01
2302 2464 7.948278 ATTTTACGAGATATTCCTACAGTGC 57.052 36.000 0.00 0.00 0.00 4.40
2303 2465 8.276325 GCAATTTTACGAGATATTCCTACAGTG 58.724 37.037 0.00 0.00 0.00 3.66
2304 2466 7.985184 TGCAATTTTACGAGATATTCCTACAGT 59.015 33.333 0.00 0.00 0.00 3.55
2305 2467 8.365399 TGCAATTTTACGAGATATTCCTACAG 57.635 34.615 0.00 0.00 0.00 2.74
2306 2468 8.725405 TTGCAATTTTACGAGATATTCCTACA 57.275 30.769 0.00 0.00 0.00 2.74
2408 2581 6.992123 ACGGAAATCAGATCATAGCAATTACA 59.008 34.615 0.00 0.00 0.00 2.41
2456 2633 0.107456 CCAGCCGCCTGATGTAGAAT 59.893 55.000 0.00 0.00 41.77 2.40
2529 2706 2.354072 CCTCTCGATCGCCGCTTC 60.354 66.667 11.09 0.00 38.37 3.86
2599 2776 4.408821 GGTGGCGTGGCATGGAGA 62.409 66.667 9.08 0.00 0.00 3.71
2647 2824 1.838073 TTGGGCGGAAAGGGACTCTC 61.838 60.000 0.00 0.00 38.49 3.20
2648 2825 1.846124 TTGGGCGGAAAGGGACTCT 60.846 57.895 0.00 0.00 38.49 3.24
2709 2886 3.022914 GATCGCGTTAGTCGGCGG 61.023 66.667 7.21 0.00 38.67 6.13
2959 3140 4.778415 CACCGCTCCTCGTCCACG 62.778 72.222 0.00 0.00 41.45 4.94
3028 3212 2.048222 CCGAGCGAGAACAAGCCA 60.048 61.111 0.00 0.00 0.00 4.75
3032 3216 2.738521 GCTGCCGAGCGAGAACAA 60.739 61.111 0.00 0.00 34.87 2.83
3137 3327 1.730064 CCGTCCCGTATTCACACAAAG 59.270 52.381 0.00 0.00 0.00 2.77
3138 3328 1.070445 ACCGTCCCGTATTCACACAAA 59.930 47.619 0.00 0.00 0.00 2.83
3242 3456 1.135527 ACGTACATACATGACCCACCG 59.864 52.381 0.00 0.00 0.00 4.94
3349 3568 4.575645 CGTTAAAACACCTGGTACAAGGAA 59.424 41.667 23.92 2.38 38.70 3.36
3360 3579 3.851976 TTTGTGCACGTTAAAACACCT 57.148 38.095 13.13 0.00 31.98 4.00
3362 3581 5.688348 TTGATTTGTGCACGTTAAAACAC 57.312 34.783 13.13 6.03 0.00 3.32
3449 3669 6.823182 ACAAAATTTTATATGGGCAGCTTTCC 59.177 34.615 2.44 0.00 0.00 3.13
3469 3699 6.975197 TGCAAAATTCATACAACTCGACAAAA 59.025 30.769 0.00 0.00 0.00 2.44
3485 3715 7.249858 ACCAAACACTCAAATTTGCAAAATTC 58.750 30.769 17.19 0.00 34.99 2.17
3487 3717 6.756299 ACCAAACACTCAAATTTGCAAAAT 57.244 29.167 17.19 4.62 34.99 1.82
3488 3718 6.566197 AACCAAACACTCAAATTTGCAAAA 57.434 29.167 17.19 0.00 34.99 2.44
3489 3719 6.566197 AAACCAAACACTCAAATTTGCAAA 57.434 29.167 15.44 15.44 34.99 3.68
3496 3891 4.208746 TCCCGTAAACCAAACACTCAAAT 58.791 39.130 0.00 0.00 0.00 2.32
3497 3892 3.618351 TCCCGTAAACCAAACACTCAAA 58.382 40.909 0.00 0.00 0.00 2.69
3501 3896 4.041938 TCCTATTCCCGTAAACCAAACACT 59.958 41.667 0.00 0.00 0.00 3.55
3508 3903 4.011698 TGCTTTTCCTATTCCCGTAAACC 58.988 43.478 0.00 0.00 0.00 3.27
3512 3907 3.985019 TGTGCTTTTCCTATTCCCGTA 57.015 42.857 0.00 0.00 0.00 4.02
3515 3910 5.163509 GGATTCTTGTGCTTTTCCTATTCCC 60.164 44.000 0.00 0.00 0.00 3.97
3560 3955 9.372369 CGTTTTGAGTCTCTTTATTAGGATTCT 57.628 33.333 0.65 0.00 0.00 2.40
3561 3956 9.367444 TCGTTTTGAGTCTCTTTATTAGGATTC 57.633 33.333 0.65 0.00 0.00 2.52
3562 3957 9.720769 TTCGTTTTGAGTCTCTTTATTAGGATT 57.279 29.630 0.65 0.00 0.00 3.01
3563 3958 9.892130 ATTCGTTTTGAGTCTCTTTATTAGGAT 57.108 29.630 0.65 0.00 0.00 3.24
3574 3969 5.205565 GTGGTTTGATTCGTTTTGAGTCTC 58.794 41.667 0.00 0.00 34.59 3.36
3577 3972 4.974368 TGTGGTTTGATTCGTTTTGAGT 57.026 36.364 0.00 0.00 0.00 3.41
3578 3973 5.518812 TCATGTGGTTTGATTCGTTTTGAG 58.481 37.500 0.00 0.00 0.00 3.02
3584 3979 5.766150 TCTTTTCATGTGGTTTGATTCGT 57.234 34.783 0.00 0.00 0.00 3.85
3591 4027 9.461312 TGCTAATAGTATCTTTTCATGTGGTTT 57.539 29.630 0.00 0.00 0.00 3.27
3624 4060 5.004361 AGGCTGAGATCCTTAGTAGCATA 57.996 43.478 0.00 0.00 33.05 3.14
3628 4064 4.142491 CGCATAGGCTGAGATCCTTAGTAG 60.142 50.000 0.00 0.00 38.10 2.57
3629 4065 3.759086 CGCATAGGCTGAGATCCTTAGTA 59.241 47.826 0.00 0.00 38.10 1.82
3636 4072 3.924918 TTCTACGCATAGGCTGAGATC 57.075 47.619 0.00 0.00 38.10 2.75
3637 4073 4.881019 ATTTCTACGCATAGGCTGAGAT 57.119 40.909 0.00 0.00 38.10 2.75
3638 4074 4.672587 AATTTCTACGCATAGGCTGAGA 57.327 40.909 0.00 0.00 38.10 3.27
3639 4075 4.811024 TCAAATTTCTACGCATAGGCTGAG 59.189 41.667 0.00 0.00 38.10 3.35
3640 4076 4.765273 TCAAATTTCTACGCATAGGCTGA 58.235 39.130 0.00 0.00 38.10 4.26
3641 4077 5.484173 TTCAAATTTCTACGCATAGGCTG 57.516 39.130 0.00 0.00 38.10 4.85
3642 4078 6.509418 TTTTCAAATTTCTACGCATAGGCT 57.491 33.333 0.00 0.00 38.10 4.58
3643 4079 7.027161 TCTTTTTCAAATTTCTACGCATAGGC 58.973 34.615 0.00 0.00 0.00 3.93
3645 4081 8.237267 ACCTCTTTTTCAAATTTCTACGCATAG 58.763 33.333 0.00 0.00 0.00 2.23
3646 4082 8.106247 ACCTCTTTTTCAAATTTCTACGCATA 57.894 30.769 0.00 0.00 0.00 3.14
3647 4083 6.981722 ACCTCTTTTTCAAATTTCTACGCAT 58.018 32.000 0.00 0.00 0.00 4.73
3649 4085 6.362551 GGAACCTCTTTTTCAAATTTCTACGC 59.637 38.462 0.00 0.00 0.00 4.42
3650 4086 7.422399 TGGAACCTCTTTTTCAAATTTCTACG 58.578 34.615 0.00 0.00 0.00 3.51
3651 4087 8.414003 ACTGGAACCTCTTTTTCAAATTTCTAC 58.586 33.333 0.00 0.00 0.00 2.59
3653 4089 7.267857 CACTGGAACCTCTTTTTCAAATTTCT 58.732 34.615 0.00 0.00 0.00 2.52
3654 4090 6.479990 CCACTGGAACCTCTTTTTCAAATTTC 59.520 38.462 0.00 0.00 0.00 2.17
3655 4091 6.156083 TCCACTGGAACCTCTTTTTCAAATTT 59.844 34.615 0.00 0.00 0.00 1.82
3656 4092 5.660864 TCCACTGGAACCTCTTTTTCAAATT 59.339 36.000 0.00 0.00 0.00 1.82
3657 4093 5.208121 TCCACTGGAACCTCTTTTTCAAAT 58.792 37.500 0.00 0.00 0.00 2.32
3659 4095 4.243793 TCCACTGGAACCTCTTTTTCAA 57.756 40.909 0.00 0.00 0.00 2.69
3660 4096 3.943671 TCCACTGGAACCTCTTTTTCA 57.056 42.857 0.00 0.00 0.00 2.69
3661 4097 5.073428 AGAATCCACTGGAACCTCTTTTTC 58.927 41.667 0.66 0.00 34.34 2.29
3662 4098 5.066913 AGAATCCACTGGAACCTCTTTTT 57.933 39.130 0.66 0.00 34.34 1.94
3663 4099 4.731313 AGAATCCACTGGAACCTCTTTT 57.269 40.909 0.66 0.00 34.34 2.27
3664 4100 5.843019 TTAGAATCCACTGGAACCTCTTT 57.157 39.130 0.66 0.00 34.34 2.52
3665 4101 5.843019 TTTAGAATCCACTGGAACCTCTT 57.157 39.130 0.66 0.00 34.34 2.85
3666 4102 5.843019 TTTTAGAATCCACTGGAACCTCT 57.157 39.130 0.66 7.30 34.34 3.69
3667 4103 6.659242 TGAATTTTAGAATCCACTGGAACCTC 59.341 38.462 0.66 0.00 34.34 3.85
3668 4104 6.552008 TGAATTTTAGAATCCACTGGAACCT 58.448 36.000 0.66 4.97 34.34 3.50
3669 4105 6.834168 TGAATTTTAGAATCCACTGGAACC 57.166 37.500 0.66 0.00 34.34 3.62
3670 4106 8.055279 TCATGAATTTTAGAATCCACTGGAAC 57.945 34.615 0.66 0.00 34.34 3.62
3671 4107 8.827832 ATCATGAATTTTAGAATCCACTGGAA 57.172 30.769 0.66 0.00 34.34 3.53
3672 4108 8.827832 AATCATGAATTTTAGAATCCACTGGA 57.172 30.769 0.00 0.00 35.55 3.86
3673 4109 9.880157 AAAATCATGAATTTTAGAATCCACTGG 57.120 29.630 0.00 0.00 44.04 4.00
3703 4139 4.816392 TGATCTCGATCGGTTTCAGAAAA 58.184 39.130 16.41 0.44 40.63 2.29
3705 4141 4.450082 TTGATCTCGATCGGTTTCAGAA 57.550 40.909 16.41 0.00 40.63 3.02
3714 4150 6.195165 GGGAATTTTTCTTTGATCTCGATCG 58.805 40.000 9.36 9.36 40.63 3.69
3715 4151 6.183360 ACGGGAATTTTTCTTTGATCTCGATC 60.183 38.462 0.00 0.00 34.97 3.69
3716 4152 5.648092 ACGGGAATTTTTCTTTGATCTCGAT 59.352 36.000 0.00 0.00 34.97 3.59
3717 4153 5.001232 ACGGGAATTTTTCTTTGATCTCGA 58.999 37.500 0.00 0.00 34.97 4.04
3718 4154 5.106712 TGACGGGAATTTTTCTTTGATCTCG 60.107 40.000 0.00 0.00 36.86 4.04
3719 4155 6.072452 AGTGACGGGAATTTTTCTTTGATCTC 60.072 38.462 0.00 0.00 0.00 2.75
3723 4159 5.845391 AAGTGACGGGAATTTTTCTTTGA 57.155 34.783 0.00 0.00 0.00 2.69
3729 4165 7.100409 TCAAAAGAAAAGTGACGGGAATTTTT 58.900 30.769 0.00 0.00 0.00 1.94
3736 4172 4.364415 TGTTCAAAAGAAAAGTGACGGG 57.636 40.909 0.00 0.00 0.00 5.28
3739 4175 7.899841 GCTCATTTTGTTCAAAAGAAAAGTGAC 59.100 33.333 14.46 5.82 37.12 3.67
3741 4177 7.182089 GGCTCATTTTGTTCAAAAGAAAAGTG 58.818 34.615 14.46 8.18 37.12 3.16
3742 4178 6.316140 GGGCTCATTTTGTTCAAAAGAAAAGT 59.684 34.615 14.46 0.00 37.12 2.66
3745 4181 5.988287 AGGGCTCATTTTGTTCAAAAGAAA 58.012 33.333 14.46 4.17 0.00 2.52
3746 4182 5.612725 AGGGCTCATTTTGTTCAAAAGAA 57.387 34.783 14.46 6.10 0.00 2.52
3747 4183 5.612725 AAGGGCTCATTTTGTTCAAAAGA 57.387 34.783 14.46 11.11 0.00 2.52
3748 4184 7.784633 TTTAAGGGCTCATTTTGTTCAAAAG 57.215 32.000 14.46 8.27 0.00 2.27
3749 4185 8.043710 TCTTTTAAGGGCTCATTTTGTTCAAAA 58.956 29.630 12.11 12.11 0.00 2.44
3750 4186 7.560368 TCTTTTAAGGGCTCATTTTGTTCAAA 58.440 30.769 0.00 0.00 0.00 2.69
3765 4201 4.437390 CGCACACTATTGCTCTTTTAAGGG 60.437 45.833 0.00 0.00 40.62 3.95
3766 4202 4.391830 TCGCACACTATTGCTCTTTTAAGG 59.608 41.667 0.00 0.00 40.62 2.69
3767 4203 5.530519 TCGCACACTATTGCTCTTTTAAG 57.469 39.130 0.00 0.00 40.62 1.85
3769 4205 4.332543 CCATCGCACACTATTGCTCTTTTA 59.667 41.667 0.00 0.00 40.62 1.52
3771 4207 2.679837 CCATCGCACACTATTGCTCTTT 59.320 45.455 0.00 0.00 40.62 2.52
3772 4208 2.093500 TCCATCGCACACTATTGCTCTT 60.093 45.455 0.00 0.00 40.62 2.85
3773 4209 1.482182 TCCATCGCACACTATTGCTCT 59.518 47.619 0.00 0.00 40.62 4.09
3774 4210 1.863454 CTCCATCGCACACTATTGCTC 59.137 52.381 0.00 0.00 40.62 4.26
3775 4211 1.945387 CTCCATCGCACACTATTGCT 58.055 50.000 0.00 0.00 40.62 3.91
3776 4212 0.305922 GCTCCATCGCACACTATTGC 59.694 55.000 0.00 0.00 39.28 3.56
3777 4213 1.596260 CAGCTCCATCGCACACTATTG 59.404 52.381 0.00 0.00 0.00 1.90
3778 4214 1.945387 CAGCTCCATCGCACACTATT 58.055 50.000 0.00 0.00 0.00 1.73
3782 4227 0.531532 ATAGCAGCTCCATCGCACAC 60.532 55.000 0.00 0.00 0.00 3.82
3788 4233 2.019249 TGCAAACATAGCAGCTCCATC 58.981 47.619 0.00 0.00 37.02 3.51
3790 4235 3.648716 TGCAAACATAGCAGCTCCA 57.351 47.368 0.00 0.00 37.02 3.86
3817 4262 0.596341 GCTAGCTCTGCTCTTACGGC 60.596 60.000 7.70 0.00 40.44 5.68
3818 4263 0.031449 GGCTAGCTCTGCTCTTACGG 59.969 60.000 15.72 0.00 40.44 4.02
3819 4264 0.741326 TGGCTAGCTCTGCTCTTACG 59.259 55.000 15.72 0.00 40.44 3.18
3821 4266 1.967066 GGATGGCTAGCTCTGCTCTTA 59.033 52.381 15.72 0.00 40.44 2.10
3822 4267 0.758123 GGATGGCTAGCTCTGCTCTT 59.242 55.000 15.72 0.00 40.44 2.85
3826 4849 2.810852 GTTTATGGATGGCTAGCTCTGC 59.189 50.000 15.72 8.09 0.00 4.26
3840 4863 1.070577 GCACGAGCTATGCGTTTATGG 60.071 52.381 6.68 0.00 40.44 2.74
3846 4869 2.509336 GTGGCACGAGCTATGCGT 60.509 61.111 14.52 4.83 44.37 5.24
3848 4871 2.464459 GGTGTGGCACGAGCTATGC 61.464 63.158 13.77 12.98 42.62 3.14
3849 4872 1.815421 GGGTGTGGCACGAGCTATG 60.815 63.158 13.77 0.00 41.70 2.23
3851 4874 3.702048 GGGGTGTGGCACGAGCTA 61.702 66.667 13.77 0.00 41.70 3.32
3862 4885 1.534729 GCTTTTCAGATTCGGGGTGT 58.465 50.000 0.00 0.00 0.00 4.16
3863 4886 0.811281 GGCTTTTCAGATTCGGGGTG 59.189 55.000 0.00 0.00 0.00 4.61
3868 4891 5.067936 TCCTCTAGTAGGCTTTTCAGATTCG 59.932 44.000 0.00 0.00 46.10 3.34
3884 4907 5.299782 CGGTAAGCTACTTGATTCCTCTAGT 59.700 44.000 0.00 0.00 40.06 2.57
3886 4909 5.198965 ACGGTAAGCTACTTGATTCCTCTA 58.801 41.667 0.00 0.00 0.00 2.43
3889 4912 4.222145 TGAACGGTAAGCTACTTGATTCCT 59.778 41.667 0.00 0.00 0.00 3.36
3897 4920 9.688592 GTTACATTATATGAACGGTAAGCTACT 57.311 33.333 0.00 0.00 0.00 2.57
3901 4924 6.128742 CCGGTTACATTATATGAACGGTAAGC 60.129 42.308 0.00 0.00 36.44 3.09
3902 4925 7.115378 GTCCGGTTACATTATATGAACGGTAAG 59.885 40.741 0.00 0.00 0.00 2.34
3904 4927 6.040278 TGTCCGGTTACATTATATGAACGGTA 59.960 38.462 0.00 0.00 0.00 4.02
3905 4928 5.163426 TGTCCGGTTACATTATATGAACGGT 60.163 40.000 0.00 0.00 0.00 4.83
3906 4929 5.291178 TGTCCGGTTACATTATATGAACGG 58.709 41.667 0.00 0.00 0.00 4.44
3907 4930 7.416154 AATGTCCGGTTACATTATATGAACG 57.584 36.000 17.45 0.00 45.84 3.95
3909 4932 8.966069 TGAAATGTCCGGTTACATTATATGAA 57.034 30.769 18.81 2.89 46.72 2.57
3911 4934 9.445786 GTTTGAAATGTCCGGTTACATTATATG 57.554 33.333 18.81 0.00 46.72 1.78
3912 4935 9.403583 AGTTTGAAATGTCCGGTTACATTATAT 57.596 29.630 18.81 6.66 46.72 0.86
3913 4936 8.670135 CAGTTTGAAATGTCCGGTTACATTATA 58.330 33.333 18.81 10.21 46.72 0.98
3914 4937 7.535139 CAGTTTGAAATGTCCGGTTACATTAT 58.465 34.615 18.81 10.98 46.72 1.28
3915 4938 6.568844 GCAGTTTGAAATGTCCGGTTACATTA 60.569 38.462 18.81 5.00 46.72 1.90
3917 4940 4.320935 GCAGTTTGAAATGTCCGGTTACAT 60.321 41.667 0.00 1.31 41.87 2.29
3918 4941 3.003897 GCAGTTTGAAATGTCCGGTTACA 59.996 43.478 0.00 0.00 0.00 2.41
3942 4973 3.057315 CCTTGAAAATCTTGTGGCGTCAT 60.057 43.478 0.00 0.00 0.00 3.06
3948 4979 1.270550 AGCGCCTTGAAAATCTTGTGG 59.729 47.619 2.29 0.00 0.00 4.17
3950 4981 1.336240 GCAGCGCCTTGAAAATCTTGT 60.336 47.619 2.29 0.00 0.00 3.16
3954 4985 4.483711 GGCAGCGCCTTGAAAATC 57.516 55.556 2.29 0.00 46.69 2.17
3965 4996 0.030504 TGTTTTGACACATGGCAGCG 59.969 50.000 0.00 0.00 32.66 5.18
4000 5031 0.599558 CCGGTCTGTGACGTTTAGGA 59.400 55.000 0.00 0.00 32.65 2.94
4003 5034 0.319083 ATGCCGGTCTGTGACGTTTA 59.681 50.000 1.90 0.00 32.65 2.01
4014 5045 3.013921 TGGACTTTTCATAATGCCGGTC 58.986 45.455 1.90 0.00 0.00 4.79
4027 5058 5.454613 CCTTTTGGCCTACATTTGGACTTTT 60.455 40.000 3.32 0.00 32.71 2.27
4061 5092 6.876789 TCGAGAAATTGCCTATTTACTCAACA 59.123 34.615 0.00 0.00 36.59 3.33
4062 5093 7.303634 TCGAGAAATTGCCTATTTACTCAAC 57.696 36.000 0.00 0.00 36.59 3.18
4063 5094 8.506168 AATCGAGAAATTGCCTATTTACTCAA 57.494 30.769 0.00 0.00 36.59 3.02
4064 5095 9.607988 TTAATCGAGAAATTGCCTATTTACTCA 57.392 29.630 0.00 0.00 36.59 3.41
4073 5104 8.912988 TGGATTAATTTAATCGAGAAATTGCCT 58.087 29.630 22.08 11.75 44.24 4.75
4074 5105 9.696917 ATGGATTAATTTAATCGAGAAATTGCC 57.303 29.630 22.08 19.77 44.24 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.