AutoCloner

Multiple sequence alignment - TraesCS4B01G222800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4B01G222800	chr4B	100.000	2264	0	0	1	2264	467350040	467347777	0.000000e+00	4181
1	TraesCS4B01G222800	chr4B	91.093	1437	110	14	408	1832	588824472	588825902	0.000000e+00	1929
2	TraesCS4B01G222800	chr2D	93.070	1746	93	15	416	2154	632766566	632768290	0.000000e+00	2529
3	TraesCS4B01G222800	chr2D	96.117	412	14	2	1	412	476788153	476788562	0.000000e+00	671
4	TraesCS4B01G222800	chr2D	96.314	407	15	0	1	407	619852496	619852902	0.000000e+00	669
5	TraesCS4B01G222800	chr2D	96.069	407	16	0	1	407	152000076	152000482	0.000000e+00	664
6	TraesCS4B01G222800	chr2D	94.186	86	5	0	2178	2263	632768272	632768187	5.070000e-27	132
7	TraesCS4B01G222800	chr6B	92.022	1805	102	23	417	2217	281222985	281221219	0.000000e+00	2497
8	TraesCS4B01G222800	chr6B	96.359	412	14	1	1	412	281224515	281224105	0.000000e+00	676
9	TraesCS4B01G222800	chr6B	91.479	399	18	7	408	805	126305483	126305866	3.310000e-148	534
10	TraesCS4B01G222800	chr1D	89.770	1867	149	29	408	2263	14674449	14672614	0.000000e+00	2351
11	TraesCS4B01G222800	chr1D	96.602	412	13	1	1	412	446418173	446418583	0.000000e+00	682
12	TraesCS4B01G222800	chr4A	88.847	1874	147	33	408	2263	564697607	564699436	0.000000e+00	2246
13	TraesCS4B01G222800	chr7D	88.297	1897	165	37	408	2263	131689776	131691656	0.000000e+00	2220
14	TraesCS4B01G222800	chr7D	86.402	1184	123	30	1095	2263	610729345	610728185	0.000000e+00	1260
15	TraesCS4B01G222800	chr7D	95.631	412	17	1	1	412	573000571	573000981	0.000000e+00	660
16	TraesCS4B01G222800	chr7D	95.631	412	15	2	1	412	72150969	72151377	0.000000e+00	658
17	TraesCS4B01G222800	chrUn	89.359	1795	126	37	408	2156	10399555	10401330	0.000000e+00	2196
18	TraesCS4B01G222800	chrUn	89.419	1446	110	31	735	2156	349150177	349151603	0.000000e+00	1783
19	TraesCS4B01G222800	chr5B	93.356	1460	73	7	416	1851	387878523	387879982	0.000000e+00	2137
20	TraesCS4B01G222800	chr5B	90.361	415	37	2	408	821	234885237	234884825	1.980000e-150	542
21	TraesCS4B01G222800	chr5B	85.494	324	39	7	1944	2263	387880032	387880351	4.660000e-87	331
22	TraesCS4B01G222800	chr5B	84.711	242	26	9	2027	2263	387880375	387880140	4.860000e-57	231
23	TraesCS4B01G222800	chr4D	93.445	1434	83	6	408	1832	122178198	122179629	0.000000e+00	2117
24	TraesCS4B01G222800	chr4D	87.654	243	23	3	2027	2263	495818443	495818684	2.220000e-70	276
25	TraesCS4B01G222800	chr4D	84.898	245	26	8	2027	2263	495818708	495818467	1.050000e-58	237
26	TraesCS4B01G222800	chr4D	81.034	174	26	6	1906	2076	495818436	495818605	5.070000e-27	132
27	TraesCS4B01G222800	chr3D	89.406	1699	121	27	411	2070	310406480	310408158	0.000000e+00	2085
28	TraesCS4B01G222800	chr3D	96.069	407	16	0	1	407	446921289	446921695	0.000000e+00	664
29	TraesCS4B01G222800	chr3D	91.429	105	7	2	2160	2263	310408402	310408505	2.340000e-30	143
30	TraesCS4B01G222800	chr5D	92.938	1416	72	13	408	1796	348341625	348343039	0.000000e+00	2036
31	TraesCS4B01G222800	chr5D	96.069	407	16	0	1	407	445783052	445782646	0.000000e+00	664
32	TraesCS4B01G222800	chr5D	81.152	191	32	4	1948	2136	520880506	520880694	1.400000e-32	150
33	TraesCS4B01G222800	chr5D	93.103	87	5	1	2178	2263	520880694	520880608	2.360000e-25	126
34	TraesCS4B01G222800	chr2B	91.678	1466	91	12	408	1843	430232080	430230616	0.000000e+00	2002
35	TraesCS4B01G222800	chr6D	91.241	1450	87	12	408	1830	62141622	62143058	0.000000e+00	1938
36	TraesCS4B01G222800	chr1B	90.074	1481	108	11	408	1851	540290199	540288721	0.000000e+00	1884
37	TraesCS4B01G222800	chr6A	85.405	1891	182	47	411	2258	23005069	23006908	0.000000e+00	1877
38	TraesCS4B01G222800	chr6A	82.979	235	32	8	2033	2263	466146738	466146508	2.950000e-49	206
39	TraesCS4B01G222800	chr6A	80.247	243	38	10	2027	2263	466412511	466412273	8.310000e-40	174
40	TraesCS4B01G222800	chr6A	81.081	222	36	6	2046	2263	466408756	466408537	2.990000e-39	172
41	TraesCS4B01G222800	chr3B	82.258	372	56	9	1898	2263	103210666	103211033	1.690000e-81	313
42	TraesCS4B01G222800	chr3B	82.400	250	33	11	2019	2263	103211064	103210821	8.200000e-50	207
43	TraesCS4B01G222800	chr3A	79.339	242	39	11	1911	2146	349070781	349071017	2.330000e-35	159

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4B01G222800	chr4B	467347777	467350040	2263	True	4181.0	4181	100.0000	1	2264	1	chr4B.!!$R1	2263
1	TraesCS4B01G222800	chr4B	588824472	588825902	1430	False	1929.0	1929	91.0930	408	1832	1	chr4B.!!$F1	1424
2	TraesCS4B01G222800	chr2D	632766566	632768290	1724	False	2529.0	2529	93.0700	416	2154	1	chr2D.!!$F4	1738
3	TraesCS4B01G222800	chr6B	281221219	281224515	3296	True	1586.5	2497	94.1905	1	2217	2	chr6B.!!$R1	2216
4	TraesCS4B01G222800	chr1D	14672614	14674449	1835	True	2351.0	2351	89.7700	408	2263	1	chr1D.!!$R1	1855
5	TraesCS4B01G222800	chr4A	564697607	564699436	1829	False	2246.0	2246	88.8470	408	2263	1	chr4A.!!$F1	1855
6	TraesCS4B01G222800	chr7D	131689776	131691656	1880	False	2220.0	2220	88.2970	408	2263	1	chr7D.!!$F2	1855
7	TraesCS4B01G222800	chr7D	610728185	610729345	1160	True	1260.0	1260	86.4020	1095	2263	1	chr7D.!!$R1	1168
8	TraesCS4B01G222800	chrUn	10399555	10401330	1775	False	2196.0	2196	89.3590	408	2156	1	chrUn.!!$F1	1748
9	TraesCS4B01G222800	chrUn	349150177	349151603	1426	False	1783.0	1783	89.4190	735	2156	1	chrUn.!!$F2	1421
10	TraesCS4B01G222800	chr5B	387878523	387880351	1828	False	1234.0	2137	89.4250	416	2263	2	chr5B.!!$F1	1847
11	TraesCS4B01G222800	chr4D	122178198	122179629	1431	False	2117.0	2117	93.4450	408	1832	1	chr4D.!!$F1	1424
12	TraesCS4B01G222800	chr3D	310406480	310408505	2025	False	1114.0	2085	90.4175	411	2263	2	chr3D.!!$F2	1852
13	TraesCS4B01G222800	chr5D	348341625	348343039	1414	False	2036.0	2036	92.9380	408	1796	1	chr5D.!!$F1	1388
14	TraesCS4B01G222800	chr2B	430230616	430232080	1464	True	2002.0	2002	91.6780	408	1843	1	chr2B.!!$R1	1435
15	TraesCS4B01G222800	chr6D	62141622	62143058	1436	False	1938.0	1938	91.2410	408	1830	1	chr6D.!!$F1	1422
16	TraesCS4B01G222800	chr1B	540288721	540290199	1478	True	1884.0	1884	90.0740	408	1851	1	chr1B.!!$R1	1443
17	TraesCS4B01G222800	chr6A	23005069	23006908	1839	False	1877.0	1877	85.4050	411	2258	1	chr6A.!!$F1	1847

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
204	205	0.318955	CAAGGCGGACCAAAGCAAAG	60.319	55.0	0.0	0.0	39.06	2.77	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1319	2561	0.112606	CATAGAGGAGGCGGGGACTA	59.887	60.0	0.0	0.0	0.0	2.59	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
33	34	1.271379	CCATTAGGAACCATAGGCCGG	60.271	57.143	0.00	0.00	36.89	6.13
141	142	0.965439	CAAAGAAACCGGGCAATGGA	59.035	50.000	6.32	0.00	0.00	3.41
188	189	3.697747	TGCGTACCCCCGGACAAG	61.698	66.667	0.73	0.00	0.00	3.16
204	205	0.318955	CAAGGCGGACCAAAGCAAAG	60.319	55.000	0.00	0.00	39.06	2.77
220	221	2.494059	CAAAGGACACCGTCAACTCAT	58.506	47.619	0.00	0.00	33.68	2.90
225	226	2.061773	GACACCGTCAACTCATGTCTG	58.938	52.381	0.00	0.00	37.33	3.51
226	227	1.270305	ACACCGTCAACTCATGTCTGG	60.270	52.381	0.00	0.00	0.00	3.86
298	299	6.038714	GTGAAGGTCAAGTTTCTCATGTCTTT	59.961	38.462	0.00	0.00	0.00	2.52
348	349	1.426598	AGTATGGGAAGGCATGGATGG	59.573	52.381	0.00	0.00	0.00	3.51
374	375	3.627577	AGGCAAACGCTATTAGGATGTTG	59.372	43.478	0.00	0.00	0.00	3.33
381	382	4.202315	ACGCTATTAGGATGTTGCATGGTA	60.202	41.667	0.00	0.00	0.00	3.25
408	409	2.744202	GAGGCCGCATATAACATTCTGG	59.256	50.000	0.00	0.00	0.00	3.86
466	1581	1.492176	CCTGAGTATGTTGGGCCAGAT	59.508	52.381	6.23	5.81	0.00	2.90
488	1603	1.448540	GTGCCAGATCCCACACTCG	60.449	63.158	4.44	0.00	32.37	4.18
597	1712	3.054361	GGTAGTGGTCATTTCATGGAGGT	60.054	47.826	0.00	0.00	0.00	3.85
600	1715	5.456921	AGTGGTCATTTCATGGAGGTATT	57.543	39.130	0.00	0.00	0.00	1.89
641	1756	1.221466	ATGCAACGACACAGGACACG	61.221	55.000	0.00	0.00	0.00	4.49
648	1763	2.230508	ACGACACAGGACACGATGTTAT	59.769	45.455	0.00	0.00	0.00	1.89
861	2086	0.551377	TGGGTTGATAGGGGAAGGCA	60.551	55.000	0.00	0.00	0.00	4.75
869	2094	2.391926	TAGGGGAAGGCATATCGACA	57.608	50.000	0.00	0.00	0.00	4.35
880	2105	3.546815	GGCATATCGACATGTTGCTCAAC	60.547	47.826	16.70	5.84	41.50	3.18
1361	2603	5.189736	TGCAAGTACTTCACCTGGATAGATT	59.810	40.000	4.77	0.00	0.00	2.40
1412	2654	7.127955	AGGACCAATATGAAGATTGTCTTAGGT	59.872	37.037	0.00	0.00	36.73	3.08
1507	2749	2.701780	GCAACGCGAGGAGGAGAGA	61.702	63.158	15.93	0.00	0.00	3.10
1508	2750	2.010582	GCAACGCGAGGAGGAGAGAT	62.011	60.000	15.93	0.00	0.00	2.75
1540	2782	1.509373	AGCTTGCTCATGAGGAGGAT	58.491	50.000	27.08	19.85	44.06	3.24
1626	2888	0.179056	AAATGGCCCCGTATGACTCG	60.179	55.000	0.00	0.00	0.00	4.18
1697	2960	7.117236	CCATGCCAAATTTATCATGAACTATGC	59.883	37.037	22.98	0.00	38.77	3.14
1845	3132	6.154445	GTGATTTGTCAGCAATTTCTGTGAT	58.846	36.000	4.99	0.00	35.63	3.06
1851	3138	5.997129	TGTCAGCAATTTCTGTGATCTGTTA	59.003	36.000	4.99	0.00	35.63	2.41
1852	3139	6.148315	TGTCAGCAATTTCTGTGATCTGTTAG	59.852	38.462	4.99	0.00	35.63	2.34
1853	3140	5.122869	TCAGCAATTTCTGTGATCTGTTAGC	59.877	40.000	4.99	0.00	35.63	3.09
1854	3141	5.005740	AGCAATTTCTGTGATCTGTTAGCA	58.994	37.500	0.00	0.00	0.00	3.49
1855	3142	5.474532	AGCAATTTCTGTGATCTGTTAGCAA	59.525	36.000	0.00	0.00	0.00	3.91
1856	3143	6.152323	AGCAATTTCTGTGATCTGTTAGCAAT	59.848	34.615	0.00	0.00	0.00	3.56
1857	3144	6.810182	GCAATTTCTGTGATCTGTTAGCAATT	59.190	34.615	0.00	0.00	0.00	2.32
1858	3145	7.330208	GCAATTTCTGTGATCTGTTAGCAATTT	59.670	33.333	0.00	0.00	0.00	1.82
1859	3146	8.857216	CAATTTCTGTGATCTGTTAGCAATTTC	58.143	33.333	0.00	0.00	0.00	2.17
1860	3147	7.750229	TTTCTGTGATCTGTTAGCAATTTCT	57.250	32.000	0.00	0.00	0.00	2.52
1861	3148	6.732531	TCTGTGATCTGTTAGCAATTTCTG	57.267	37.500	0.00	0.00	0.00	3.02
1862	3149	6.233434	TCTGTGATCTGTTAGCAATTTCTGT	58.767	36.000	0.00	0.00	0.00	3.41
1863	3150	6.148315	TCTGTGATCTGTTAGCAATTTCTGTG	59.852	38.462	0.00	0.00	0.00	3.66
1864	3151	5.997129	TGTGATCTGTTAGCAATTTCTGTGA	59.003	36.000	0.00	0.00	0.00	3.58
1865	3152	6.073058	TGTGATCTGTTAGCAATTTCTGTGAC	60.073	38.462	0.00	0.00	0.00	3.67
1866	3153	5.412594	TGATCTGTTAGCAATTTCTGTGACC	59.587	40.000	0.00	0.00	0.00	4.02
1876	3163	3.552132	TTTCTGTGACCTGTTGTGCTA	57.448	42.857	0.00	0.00	0.00	3.49
1880	3167	3.261643	TCTGTGACCTGTTGTGCTATGAT	59.738	43.478	0.00	0.00	0.00	2.45
1881	3168	4.005650	CTGTGACCTGTTGTGCTATGATT	58.994	43.478	0.00	0.00	0.00	2.57
1935	3242	4.351054	GCCACAGGACCTGGTGGG	62.351	72.222	29.21	24.81	35.11	4.61
1972	3279	1.003355	ACCAGAGACAATGGCGGTG	60.003	57.895	0.00	0.00	41.87	4.94
2081	3396	2.454369	TCCTACCGCCAGGAACAAA	58.546	52.632	1.00	0.00	41.88	2.83
2083	3398	1.305930	CCTACCGCCAGGAACAAAGC	61.306	60.000	0.00	0.00	41.02	3.51
2086	3401	2.978010	CGCCAGGAACAAAGCGGT	60.978	61.111	0.00	0.00	44.64	5.68
2158	3627	1.078426	GAAGCCTACCGCCACATGT	60.078	57.895	0.00	0.00	38.78	3.21
2162	3631	1.241315	GCCTACCGCCACATGTTGTT	61.241	55.000	0.00	0.00	0.00	2.83
2263	3734	1.971357	CGGTAGGATCCTGCAACCTAT	59.029	52.381	28.38	0.83	38.33	2.57

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
33	34	6.900568	TTGATTTGAATGACCAACAACAAC	57.099	33.333	0.00	0.00	32.33	3.32
141	142	3.254166	GTGCCAACATGACTCTTCAACAT	59.746	43.478	0.00	0.00	34.61	2.71
188	189	1.901464	TCCTTTGCTTTGGTCCGCC	60.901	57.895	0.00	0.00	0.00	6.13
196	197	1.404035	GTTGACGGTGTCCTTTGCTTT	59.596	47.619	0.00	0.00	0.00	3.51
204	205	1.000955	AGACATGAGTTGACGGTGTCC	59.999	52.381	0.00	0.00	39.89	4.02
220	221	7.347222	ACAATTTGTATCCTAGATACCCAGACA	59.653	37.037	11.25	0.00	0.00	3.41
225	226	8.974060	TTCAACAATTTGTATCCTAGATACCC	57.026	34.615	11.25	0.00	34.02	3.69
298	299	5.011738	GGGTATCCGAATAGTTCCTCAATCA	59.988	44.000	0.00	0.00	0.00	2.57
350	351	3.877508	ACATCCTAATAGCGTTTGCCTTC	59.122	43.478	0.00	0.00	44.31	3.46
360	361	6.824305	ATTACCATGCAACATCCTAATAGC	57.176	37.500	0.00	0.00	0.00	2.97
374	375	1.200020	GCGGCCTCATAATTACCATGC	59.800	52.381	0.00	0.00	0.00	4.06
381	382	6.886459	AGAATGTTATATGCGGCCTCATAATT	59.114	34.615	18.94	13.49	33.19	1.40
408	409	3.969553	AGGAAAGGATTAAACTGAGGGC	58.030	45.455	0.00	0.00	0.00	5.19
466	1581	1.915489	AGTGTGGGATCTGGCACAATA	59.085	47.619	13.44	0.00	38.70	1.90
488	1603	0.181350	CTTCCCCTCATAGGCACCAC	59.819	60.000	0.00	0.00	32.73	4.16
597	1712	6.303054	TCTCCACAATTGTTGTTCTCCAATA	58.697	36.000	8.77	0.00	43.23	1.90
600	1715	4.163441	TCTCCACAATTGTTGTTCTCCA	57.837	40.909	8.77	0.00	43.23	3.86
641	1756	6.199937	AGGTTTCTTGCATGTCATAACATC	57.800	37.500	0.00	0.00	44.41	3.06
648	1763	4.072131	GGTTCTAGGTTTCTTGCATGTCA	58.928	43.478	0.00	0.00	0.00	3.58
724	1913	3.560251	CTACCGCCCCCTCCATGG	61.560	72.222	4.97	4.97	0.00	3.66
725	1914	4.256180	GCTACCGCCCCCTCCATG	62.256	72.222	0.00	0.00	0.00	3.66
737	1926	1.684734	TCCTTCCTCCACGGCTACC	60.685	63.158	0.00	0.00	0.00	3.18
740	1929	0.684805	CTAGTCCTTCCTCCACGGCT	60.685	60.000	0.00	0.00	0.00	5.52
823	2048	2.039746	CCAACATGTCCTAGAACCACCA	59.960	50.000	0.00	0.00	0.00	4.17
861	2086	3.206150	GGGTTGAGCAACATGTCGATAT	58.794	45.455	14.55	0.00	42.85	1.63
869	2094	1.843368	CCATCTGGGTTGAGCAACAT	58.157	50.000	14.55	0.00	42.85	2.71
880	2105	6.528537	TTCACATTATTTCAACCATCTGGG	57.471	37.500	0.54	0.00	44.81	4.45
1319	2561	0.112606	CATAGAGGAGGCGGGGACTA	59.887	60.000	0.00	0.00	0.00	2.59
1361	2603	4.661222	TGGACATCTTTTGGCACTTCATA	58.339	39.130	0.00	0.00	33.62	2.15
1427	2669	4.926140	AGCCTCTTTGAAACCTTTCTTG	57.074	40.909	0.00	0.00	38.02	3.02
1507	2749	4.085876	AGCTTTGCTTGGCGTGAT	57.914	50.000	0.00	0.00	33.89	3.06
1562	2804	0.473755	TCCTCTTGTGCCTTGCAAGA	59.526	50.000	28.05	5.82	46.78	3.02
1697	2960	4.943705	ACATGGGTTCTTGCATTAGTACTG	59.056	41.667	5.39	0.00	0.00	2.74
1819	3086	5.924254	CACAGAAATTGCTGACAAATCACAT	59.076	36.000	20.85	0.00	39.77	3.21
1845	3132	4.756642	CAGGTCACAGAAATTGCTAACAGA	59.243	41.667	0.00	0.00	0.00	3.41
1851	3138	3.067180	CACAACAGGTCACAGAAATTGCT	59.933	43.478	0.00	0.00	0.00	3.91
1852	3139	3.374745	CACAACAGGTCACAGAAATTGC	58.625	45.455	0.00	0.00	0.00	3.56
1853	3140	3.067180	AGCACAACAGGTCACAGAAATTG	59.933	43.478	0.00	0.00	0.00	2.32
1854	3141	3.290710	AGCACAACAGGTCACAGAAATT	58.709	40.909	0.00	0.00	0.00	1.82
1855	3142	2.936202	AGCACAACAGGTCACAGAAAT	58.064	42.857	0.00	0.00	0.00	2.17
1856	3143	2.418368	AGCACAACAGGTCACAGAAA	57.582	45.000	0.00	0.00	0.00	2.52
1857	3144	3.070878	TCATAGCACAACAGGTCACAGAA	59.929	43.478	0.00	0.00	0.00	3.02
1858	3145	2.632512	TCATAGCACAACAGGTCACAGA	59.367	45.455	0.00	0.00	0.00	3.41
1859	3146	3.044235	TCATAGCACAACAGGTCACAG	57.956	47.619	0.00	0.00	0.00	3.66
1860	3147	3.701205	ATCATAGCACAACAGGTCACA	57.299	42.857	0.00	0.00	0.00	3.58
1861	3148	4.379813	CCAAATCATAGCACAACAGGTCAC	60.380	45.833	0.00	0.00	0.00	3.67
1862	3149	3.758023	CCAAATCATAGCACAACAGGTCA	59.242	43.478	0.00	0.00	0.00	4.02
1863	3150	3.428045	GCCAAATCATAGCACAACAGGTC	60.428	47.826	0.00	0.00	0.00	3.85
1864	3151	2.493278	GCCAAATCATAGCACAACAGGT	59.507	45.455	0.00	0.00	0.00	4.00
1865	3152	2.492881	TGCCAAATCATAGCACAACAGG	59.507	45.455	0.00	0.00	0.00	4.00
1866	3153	3.441222	TCTGCCAAATCATAGCACAACAG	59.559	43.478	0.00	0.00	32.06	3.16
1876	3163	3.726557	TCCTCTGTTCTGCCAAATCAT	57.273	42.857	0.00	0.00	0.00	2.45
1880	3167	4.579869	GAGTAATCCTCTGTTCTGCCAAA	58.420	43.478	0.00	0.00	37.22	3.28
1881	3168	4.207891	GAGTAATCCTCTGTTCTGCCAA	57.792	45.455	0.00	0.00	37.22	4.52
1935	3242	1.134371	GTGGTAGGGTCAAGCATCCTC	60.134	57.143	0.00	0.00	32.46	3.71
1978	3286	6.573725	CGTTTTTCTCGTCATAGAAACTTTGG	59.426	38.462	0.00	0.00	43.39	3.28
1989	3302	3.991367	AGGTTCTCGTTTTTCTCGTCAT	58.009	40.909	0.00	0.00	0.00	3.06
2158	3627	0.535553	GGTTGACCCTACCGCAACAA	60.536	55.000	0.00	0.00	42.65	2.83
2229	3700	3.627332	TACCGCCAGGGACCATGGA	62.627	63.158	29.23	4.62	43.47	3.41

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.