Multiple sequence alignment - TraesCS4B01G221600

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G221600 chr4B 100.000 4650 0 0 1 4650 465776826 465781475 0.000000e+00 8588.0
1 TraesCS4B01G221600 chr4B 94.737 1159 61 0 3212 4370 465798684 465799842 0.000000e+00 1803.0
2 TraesCS4B01G221600 chr4B 94.525 621 29 4 4032 4650 165962547 165963164 0.000000e+00 953.0
3 TraesCS4B01G221600 chr4B 94.516 620 31 3 4031 4650 659218201 659217585 0.000000e+00 953.0
4 TraesCS4B01G221600 chr4B 97.519 524 12 1 2671 3194 404003061 404002539 0.000000e+00 894.0
5 TraesCS4B01G221600 chr4D 90.755 1709 138 12 971 2672 379159727 379161422 0.000000e+00 2263.0
6 TraesCS4B01G221600 chr4D 92.405 553 39 2 3460 4012 379162043 379162592 0.000000e+00 785.0
7 TraesCS4B01G221600 chr4D 78.221 877 128 29 2 850 379158763 379159604 1.930000e-138 503.0
8 TraesCS4B01G221600 chr4D 91.039 279 13 2 3195 3463 379161420 379161696 2.640000e-97 366.0
9 TraesCS4B01G221600 chr4A 89.103 1716 144 28 971 2672 85592497 85590811 0.000000e+00 2093.0
10 TraesCS4B01G221600 chr4A 91.928 830 54 4 3195 4013 85590813 85589986 0.000000e+00 1149.0
11 TraesCS4B01G221600 chr4A 97.714 525 11 1 2671 3194 738021092 738020568 0.000000e+00 902.0
12 TraesCS4B01G221600 chr6B 89.671 1307 119 11 972 2274 531797129 531795835 0.000000e+00 1652.0
13 TraesCS4B01G221600 chr6B 86.957 575 68 6 997 1570 531740255 531739687 1.410000e-179 640.0
14 TraesCS4B01G221600 chr6B 88.350 412 34 8 2271 2672 531791759 531791352 2.520000e-132 483.0
15 TraesCS4B01G221600 chr6B 94.138 290 17 0 3499 3788 531791085 531790796 4.270000e-120 442.0
16 TraesCS4B01G221600 chr6B 85.283 265 27 8 3200 3453 531791349 531791086 3.570000e-66 263.0
17 TraesCS4B01G221600 chr6B 90.291 103 10 0 1621 1723 532041056 532040954 8.120000e-28 135.0
18 TraesCS4B01G221600 chr1B 95.040 625 26 4 4027 4650 497118830 497118210 0.000000e+00 977.0
19 TraesCS4B01G221600 chr1B 94.839 620 27 3 4032 4650 158705384 158704769 0.000000e+00 963.0
20 TraesCS4B01G221600 chr1B 97.529 526 12 1 2670 3194 192107785 192107260 0.000000e+00 898.0
21 TraesCS4B01G221600 chr7D 95.000 620 27 3 4032 4650 442523053 442522437 0.000000e+00 970.0
22 TraesCS4B01G221600 chr2D 94.839 620 27 4 4032 4650 587348980 587348365 0.000000e+00 963.0
23 TraesCS4B01G221600 chr3B 94.677 620 30 3 4032 4650 623403052 623403669 0.000000e+00 959.0
24 TraesCS4B01G221600 chr3B 97.885 520 11 0 2675 3194 669447693 669447174 0.000000e+00 900.0
25 TraesCS4B01G221600 chr3B 97.889 521 10 1 2675 3194 778187250 778187770 0.000000e+00 900.0
26 TraesCS4B01G221600 chr3B 97.885 520 9 2 2675 3194 151747945 151748462 0.000000e+00 898.0
27 TraesCS4B01G221600 chr3B 97.343 527 13 1 2675 3201 608141392 608141917 0.000000e+00 894.0
28 TraesCS4B01G221600 chr3B 80.864 162 28 2 2 163 384913488 384913646 1.760000e-24 124.0
29 TraesCS4B01G221600 chr5D 94.382 623 31 3 4029 4650 378869802 378870421 0.000000e+00 953.0
30 TraesCS4B01G221600 chr2B 97.889 521 11 0 2674 3194 583691580 583692100 0.000000e+00 902.0
31 TraesCS4B01G221600 chr2B 97.885 520 11 0 2675 3194 394261420 394261939 0.000000e+00 900.0
32 TraesCS4B01G221600 chr3A 87.925 265 17 2 3500 3763 675182326 675182576 9.780000e-77 298.0
33 TraesCS4B01G221600 chr3A 83.929 280 33 8 2355 2626 675181732 675182007 1.660000e-64 257.0
34 TraesCS4B01G221600 chr3A 81.967 122 14 4 3342 3455 675182205 675182326 3.830000e-16 97.1
35 TraesCS4B01G221600 chr5B 75.467 428 80 12 237 641 707693631 707694056 7.950000e-43 185.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G221600 chr4B 465776826 465781475 4649 False 8588.000000 8588 100.0000 1 4650 1 chr4B.!!$F2 4649
1 TraesCS4B01G221600 chr4B 465798684 465799842 1158 False 1803.000000 1803 94.7370 3212 4370 1 chr4B.!!$F3 1158
2 TraesCS4B01G221600 chr4B 165962547 165963164 617 False 953.000000 953 94.5250 4032 4650 1 chr4B.!!$F1 618
3 TraesCS4B01G221600 chr4B 659217585 659218201 616 True 953.000000 953 94.5160 4031 4650 1 chr4B.!!$R2 619
4 TraesCS4B01G221600 chr4B 404002539 404003061 522 True 894.000000 894 97.5190 2671 3194 1 chr4B.!!$R1 523
5 TraesCS4B01G221600 chr4D 379158763 379162592 3829 False 979.250000 2263 88.1050 2 4012 4 chr4D.!!$F1 4010
6 TraesCS4B01G221600 chr4A 85589986 85592497 2511 True 1621.000000 2093 90.5155 971 4013 2 chr4A.!!$R2 3042
7 TraesCS4B01G221600 chr4A 738020568 738021092 524 True 902.000000 902 97.7140 2671 3194 1 chr4A.!!$R1 523
8 TraesCS4B01G221600 chr6B 531795835 531797129 1294 True 1652.000000 1652 89.6710 972 2274 1 chr6B.!!$R2 1302
9 TraesCS4B01G221600 chr6B 531739687 531740255 568 True 640.000000 640 86.9570 997 1570 1 chr6B.!!$R1 573
10 TraesCS4B01G221600 chr6B 531790796 531791759 963 True 396.000000 483 89.2570 2271 3788 3 chr6B.!!$R4 1517
11 TraesCS4B01G221600 chr1B 497118210 497118830 620 True 977.000000 977 95.0400 4027 4650 1 chr1B.!!$R3 623
12 TraesCS4B01G221600 chr1B 158704769 158705384 615 True 963.000000 963 94.8390 4032 4650 1 chr1B.!!$R1 618
13 TraesCS4B01G221600 chr1B 192107260 192107785 525 True 898.000000 898 97.5290 2670 3194 1 chr1B.!!$R2 524
14 TraesCS4B01G221600 chr7D 442522437 442523053 616 True 970.000000 970 95.0000 4032 4650 1 chr7D.!!$R1 618
15 TraesCS4B01G221600 chr2D 587348365 587348980 615 True 963.000000 963 94.8390 4032 4650 1 chr2D.!!$R1 618
16 TraesCS4B01G221600 chr3B 623403052 623403669 617 False 959.000000 959 94.6770 4032 4650 1 chr3B.!!$F4 618
17 TraesCS4B01G221600 chr3B 669447174 669447693 519 True 900.000000 900 97.8850 2675 3194 1 chr3B.!!$R1 519
18 TraesCS4B01G221600 chr3B 778187250 778187770 520 False 900.000000 900 97.8890 2675 3194 1 chr3B.!!$F5 519
19 TraesCS4B01G221600 chr3B 151747945 151748462 517 False 898.000000 898 97.8850 2675 3194 1 chr3B.!!$F1 519
20 TraesCS4B01G221600 chr3B 608141392 608141917 525 False 894.000000 894 97.3430 2675 3201 1 chr3B.!!$F3 526
21 TraesCS4B01G221600 chr5D 378869802 378870421 619 False 953.000000 953 94.3820 4029 4650 1 chr5D.!!$F1 621
22 TraesCS4B01G221600 chr2B 583691580 583692100 520 False 902.000000 902 97.8890 2674 3194 1 chr2B.!!$F2 520
23 TraesCS4B01G221600 chr2B 394261420 394261939 519 False 900.000000 900 97.8850 2675 3194 1 chr2B.!!$F1 519
24 TraesCS4B01G221600 chr3A 675181732 675182576 844 False 217.366667 298 84.6070 2355 3763 3 chr3A.!!$F1 1408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
871 933 0.036671 ACACGGCTTACTTGGCCTAC 60.037 55.0 3.32 0.0 46.73 3.18 F
1754 1864 0.116143 AGGCAGAGGAGGAAGACAGT 59.884 55.0 0.00 0.0 0.00 3.55 F
1817 1927 0.845337 AACCCTTTGTTGACCCGGTA 59.155 50.0 0.00 0.0 35.31 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2420 2556 0.454196 AACAGAAACGGTGCACCAAC 59.546 50.0 34.16 20.7 35.14 3.77 R
3622 4209 0.035881 CCTGCTGCTTCTTGTCCTGA 59.964 55.0 0.00 0.0 0.00 3.86 R
3797 4385 0.518636 TGCAATGCGACAAGAAGCTC 59.481 50.0 0.00 0.0 0.00 4.09 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.151668 CCAACAAGAGAAGCTGTCGG 58.848 55.000 0.00 0.00 0.00 4.79
33 34 2.175202 ACAAGAGAAGCTGTCGGAGAT 58.825 47.619 0.00 0.00 40.67 2.75
35 36 1.110442 AGAGAAGCTGTCGGAGATGG 58.890 55.000 0.00 0.00 40.67 3.51
36 37 0.529555 GAGAAGCTGTCGGAGATGGC 60.530 60.000 0.00 0.00 40.67 4.40
41 42 3.723235 CTGTCGGAGATGGCGGTGG 62.723 68.421 0.00 0.00 40.67 4.61
67 68 0.318191 ATCCGATGATCACGCTCGTG 60.318 55.000 15.49 15.49 46.64 4.35
81 82 2.476619 CGCTCGTGTGAAAGATCAACTT 59.523 45.455 0.00 0.00 40.98 2.66
110 111 4.783764 AGGAAAAATTACCGCCTCAAAG 57.216 40.909 0.00 0.00 0.00 2.77
111 112 4.149598 AGGAAAAATTACCGCCTCAAAGT 58.850 39.130 0.00 0.00 0.00 2.66
112 113 4.022329 AGGAAAAATTACCGCCTCAAAGTG 60.022 41.667 0.00 0.00 0.00 3.16
119 120 3.267974 GCCTCAAAGTGAAGGCGG 58.732 61.111 0.00 0.00 33.43 6.13
126 127 1.066908 CAAAGTGAAGGCGGCAAAGAA 59.933 47.619 13.08 0.00 0.00 2.52
128 129 0.108585 AGTGAAGGCGGCAAAGAAGA 59.891 50.000 13.08 0.00 0.00 2.87
131 132 0.949105 GAAGGCGGCAAAGAAGACGA 60.949 55.000 13.08 0.00 44.57 4.20
132 133 0.321653 AAGGCGGCAAAGAAGACGAT 60.322 50.000 13.08 0.00 44.57 3.73
133 134 1.021390 AGGCGGCAAAGAAGACGATG 61.021 55.000 13.08 0.00 44.57 3.84
134 135 1.226128 GCGGCAAAGAAGACGATGC 60.226 57.895 0.00 0.00 44.57 3.91
135 136 1.639298 GCGGCAAAGAAGACGATGCT 61.639 55.000 0.00 0.00 44.57 3.79
153 154 1.238439 CTCAAGAAGCAAAAGGCCGA 58.762 50.000 0.00 0.00 46.50 5.54
191 192 2.662596 GCAGACGTGGTGGATGGA 59.337 61.111 0.00 0.00 0.00 3.41
199 200 1.997311 TGGTGGATGGAGGAGCCTG 60.997 63.158 0.00 0.00 37.63 4.85
225 226 4.547367 GCCCCCGCTATTGTCGCT 62.547 66.667 0.00 0.00 0.00 4.93
234 235 1.927174 GCTATTGTCGCTGATCGTGTT 59.073 47.619 0.00 0.00 39.67 3.32
236 237 0.443869 ATTGTCGCTGATCGTGTTGC 59.556 50.000 0.00 0.00 39.67 4.17
237 238 1.565156 TTGTCGCTGATCGTGTTGCC 61.565 55.000 0.00 0.00 39.67 4.52
238 239 2.027073 GTCGCTGATCGTGTTGCCA 61.027 57.895 0.00 0.00 39.67 4.92
248 251 1.451337 CGTGTTGCCACCATGTCCAA 61.451 55.000 0.00 0.00 38.41 3.53
256 259 2.417243 GCCACCATGTCCAAAGCATTAC 60.417 50.000 0.00 0.00 0.00 1.89
260 263 4.218200 CACCATGTCCAAAGCATTACAAGA 59.782 41.667 0.00 0.00 0.00 3.02
264 267 2.492088 GTCCAAAGCATTACAAGACCCC 59.508 50.000 0.00 0.00 0.00 4.95
265 268 2.109128 TCCAAAGCATTACAAGACCCCA 59.891 45.455 0.00 0.00 0.00 4.96
275 278 6.183360 GCATTACAAGACCCCATACTACTACA 60.183 42.308 0.00 0.00 0.00 2.74
276 279 7.634210 GCATTACAAGACCCCATACTACTACAA 60.634 40.741 0.00 0.00 0.00 2.41
296 299 3.019003 GCCAAGCAGCTCGGTAGGA 62.019 63.158 0.07 0.00 0.00 2.94
297 300 1.596934 CCAAGCAGCTCGGTAGGAA 59.403 57.895 0.00 0.00 0.00 3.36
338 343 1.470098 GCAAGTGCCTTCATCGTTGAT 59.530 47.619 0.00 0.00 34.31 2.57
344 349 3.127548 GTGCCTTCATCGTTGATGTCAAT 59.872 43.478 6.68 0.00 40.55 2.57
353 358 0.892814 TTGATGTCAATGCGGTGCCA 60.893 50.000 0.00 0.00 0.00 4.92
354 359 0.680601 TGATGTCAATGCGGTGCCAT 60.681 50.000 0.00 0.00 0.00 4.40
356 361 1.717791 ATGTCAATGCGGTGCCATCG 61.718 55.000 0.00 0.00 0.00 3.84
364 369 3.825812 CGGTGCCATCGCTTTTATC 57.174 52.632 0.00 0.00 35.36 1.75
365 370 0.042188 CGGTGCCATCGCTTTTATCG 60.042 55.000 0.00 0.00 35.36 2.92
366 371 0.307760 GGTGCCATCGCTTTTATCGG 59.692 55.000 0.00 0.00 35.36 4.18
367 372 1.295792 GTGCCATCGCTTTTATCGGA 58.704 50.000 0.00 0.00 35.36 4.55
368 373 1.873591 GTGCCATCGCTTTTATCGGAT 59.126 47.619 0.00 0.00 35.36 4.18
369 374 2.290641 GTGCCATCGCTTTTATCGGATT 59.709 45.455 0.00 0.00 35.36 3.01
370 375 2.290367 TGCCATCGCTTTTATCGGATTG 59.710 45.455 0.00 0.00 35.36 2.67
371 376 2.290641 GCCATCGCTTTTATCGGATTGT 59.709 45.455 0.00 0.00 0.00 2.71
372 377 3.243068 GCCATCGCTTTTATCGGATTGTT 60.243 43.478 0.00 0.00 0.00 2.83
373 378 4.527564 CCATCGCTTTTATCGGATTGTTC 58.472 43.478 0.00 0.00 0.00 3.18
374 379 4.035091 CCATCGCTTTTATCGGATTGTTCA 59.965 41.667 0.00 0.00 0.00 3.18
375 380 5.277974 CCATCGCTTTTATCGGATTGTTCAT 60.278 40.000 0.00 0.00 0.00 2.57
376 381 5.403897 TCGCTTTTATCGGATTGTTCATC 57.596 39.130 0.00 0.00 0.00 2.92
377 382 4.873259 TCGCTTTTATCGGATTGTTCATCA 59.127 37.500 0.00 0.00 32.79 3.07
378 383 5.527214 TCGCTTTTATCGGATTGTTCATCAT 59.473 36.000 0.00 0.00 32.79 2.45
379 384 6.038161 TCGCTTTTATCGGATTGTTCATCATT 59.962 34.615 0.00 0.00 32.79 2.57
389 394 3.564235 TGTTCATCATTGCAGCTTGAC 57.436 42.857 0.00 0.00 0.00 3.18
390 395 3.151554 TGTTCATCATTGCAGCTTGACT 58.848 40.909 0.00 0.00 0.00 3.41
399 404 2.759783 CAGCTTGACTGGACATCGG 58.240 57.895 0.00 0.00 43.19 4.18
400 405 0.036952 CAGCTTGACTGGACATCGGT 60.037 55.000 0.00 0.00 43.19 4.69
408 413 1.595993 CTGGACATCGGTCGTGGAGT 61.596 60.000 0.00 0.00 45.28 3.85
413 418 1.306148 CATCGGTCGTGGAGTAGCTA 58.694 55.000 0.00 0.00 0.00 3.32
414 419 1.880675 CATCGGTCGTGGAGTAGCTAT 59.119 52.381 0.00 0.00 0.00 2.97
420 425 0.747255 CGTGGAGTAGCTATGTGCCT 59.253 55.000 0.00 0.00 44.23 4.75
421 426 1.269309 CGTGGAGTAGCTATGTGCCTC 60.269 57.143 0.00 0.00 44.23 4.70
424 429 1.069358 GGAGTAGCTATGTGCCTCCAC 59.931 57.143 18.09 0.00 44.42 4.02
499 504 5.526479 ACATGAAGATGTTTGAGATGATCCG 59.474 40.000 0.00 0.00 40.05 4.18
500 505 5.089970 TGAAGATGTTTGAGATGATCCGT 57.910 39.130 0.00 0.00 0.00 4.69
503 508 5.287674 AGATGTTTGAGATGATCCGTGAT 57.712 39.130 0.00 0.00 0.00 3.06
506 511 4.831107 TGTTTGAGATGATCCGTGATGAA 58.169 39.130 0.00 0.00 0.00 2.57
508 513 4.743057 TTGAGATGATCCGTGATGAAGT 57.257 40.909 0.00 0.00 0.00 3.01
515 520 1.095600 TCCGTGATGAAGTCGAGGAG 58.904 55.000 0.00 0.00 33.11 3.69
526 531 3.673543 AGTCGAGGAGGAGGTTTCTAT 57.326 47.619 0.00 0.00 0.00 1.98
533 538 2.362717 GGAGGAGGTTTCTATGAGGACG 59.637 54.545 0.00 0.00 0.00 4.79
535 540 1.413077 GGAGGTTTCTATGAGGACGGG 59.587 57.143 0.00 0.00 0.00 5.28
536 541 2.108970 GAGGTTTCTATGAGGACGGGT 58.891 52.381 0.00 0.00 0.00 5.28
539 544 2.364647 GGTTTCTATGAGGACGGGTAGG 59.635 54.545 0.00 0.00 0.00 3.18
559 564 0.842030 TGGATGACTTGGAGCCCACT 60.842 55.000 0.00 0.00 30.78 4.00
571 576 3.399181 CCCACTAAGGCCGCCTCA 61.399 66.667 13.72 0.00 35.39 3.86
572 577 2.125106 CCACTAAGGCCGCCTCAC 60.125 66.667 13.72 0.00 30.89 3.51
581 586 3.941188 CCGCCTCACACACCCAGT 61.941 66.667 0.00 0.00 0.00 4.00
598 603 1.207329 CAGTTGGGCTACACCTAGTCC 59.793 57.143 0.00 0.00 44.27 3.85
609 614 0.822164 ACCTAGTCCGGCATGTACAC 59.178 55.000 0.00 0.00 0.00 2.90
616 621 1.449601 CGGCATGTACACCCAGTCC 60.450 63.158 13.21 2.23 0.00 3.85
618 623 1.594833 GCATGTACACCCAGTCCGA 59.405 57.895 0.00 0.00 0.00 4.55
648 653 3.031417 GCTACACCCAGCCCGACAT 62.031 63.158 0.00 0.00 35.40 3.06
649 654 1.682451 GCTACACCCAGCCCGACATA 61.682 60.000 0.00 0.00 35.40 2.29
650 655 0.389391 CTACACCCAGCCCGACATAG 59.611 60.000 0.00 0.00 0.00 2.23
652 657 0.907704 ACACCCAGCCCGACATAGAA 60.908 55.000 0.00 0.00 0.00 2.10
655 660 0.251916 CCCAGCCCGACATAGAAACA 59.748 55.000 0.00 0.00 0.00 2.83
656 661 1.134098 CCCAGCCCGACATAGAAACAT 60.134 52.381 0.00 0.00 0.00 2.71
662 667 3.311596 GCCCGACATAGAAACATAACCAC 59.688 47.826 0.00 0.00 0.00 4.16
671 694 8.093927 ACATAGAAACATAACCACAAAATTGGG 58.906 33.333 0.00 0.00 41.49 4.12
673 696 3.694043 ACATAACCACAAAATTGGGCC 57.306 42.857 0.00 0.00 41.49 5.80
675 698 0.318762 TAACCACAAAATTGGGCCGC 59.681 50.000 0.00 0.00 41.49 6.53
691 714 4.704833 GCCGGACAGCAGGAGCAA 62.705 66.667 5.05 0.00 45.49 3.91
695 718 1.078567 GGACAGCAGGAGCAAGAGG 60.079 63.158 0.00 0.00 45.49 3.69
696 719 1.078567 GACAGCAGGAGCAAGAGGG 60.079 63.158 0.00 0.00 45.49 4.30
699 722 4.811364 GCAGGAGCAAGAGGGGGC 62.811 72.222 0.00 0.00 41.58 5.80
700 723 3.333219 CAGGAGCAAGAGGGGGCA 61.333 66.667 0.00 0.00 0.00 5.36
702 725 4.811364 GGAGCAAGAGGGGGCAGC 62.811 72.222 0.00 0.00 0.00 5.25
719 780 2.416566 GCAGCGACGATGATGATCCTAT 60.417 50.000 18.71 0.00 0.00 2.57
743 804 2.748461 TTTCTTTGAGTTGAACGGCG 57.252 45.000 4.80 4.80 0.00 6.46
744 805 1.942677 TTCTTTGAGTTGAACGGCGA 58.057 45.000 16.62 0.00 0.00 5.54
745 806 2.163818 TCTTTGAGTTGAACGGCGAT 57.836 45.000 16.62 0.00 0.00 4.58
746 807 1.798223 TCTTTGAGTTGAACGGCGATG 59.202 47.619 16.62 0.00 0.00 3.84
747 808 1.798223 CTTTGAGTTGAACGGCGATGA 59.202 47.619 16.62 0.00 0.00 2.92
748 809 2.093306 TTGAGTTGAACGGCGATGAT 57.907 45.000 16.62 0.00 0.00 2.45
749 810 1.640428 TGAGTTGAACGGCGATGATC 58.360 50.000 16.62 6.85 0.00 2.92
750 811 1.067213 TGAGTTGAACGGCGATGATCA 60.067 47.619 16.62 9.61 0.00 2.92
751 812 2.205074 GAGTTGAACGGCGATGATCAT 58.795 47.619 16.62 8.25 0.00 2.45
752 813 2.205074 AGTTGAACGGCGATGATCATC 58.795 47.619 23.42 23.42 34.56 2.92
795 856 6.921857 GGATCATCATAATTTGCAGAAGGTTG 59.078 38.462 0.00 0.00 0.00 3.77
812 873 0.670706 TTGCAAACCATGTAAGCGCA 59.329 45.000 11.47 0.00 0.00 6.09
814 875 0.240945 GCAAACCATGTAAGCGCACT 59.759 50.000 11.47 0.00 0.00 4.40
817 879 0.960364 AACCATGTAAGCGCACTGGG 60.960 55.000 11.47 8.41 0.00 4.45
819 881 2.039974 CATGTAAGCGCACTGGGCA 61.040 57.895 19.31 0.00 44.06 5.36
823 885 2.965520 TAAGCGCACTGGGCATGGA 61.966 57.895 19.31 0.00 44.06 3.41
845 907 1.044611 GACCAGCCTATCAGAGACCC 58.955 60.000 0.00 0.00 0.00 4.46
846 908 0.339859 ACCAGCCTATCAGAGACCCA 59.660 55.000 0.00 0.00 0.00 4.51
847 909 1.047002 CCAGCCTATCAGAGACCCAG 58.953 60.000 0.00 0.00 0.00 4.45
848 910 1.690845 CCAGCCTATCAGAGACCCAGT 60.691 57.143 0.00 0.00 0.00 4.00
849 911 2.114616 CAGCCTATCAGAGACCCAGTT 58.885 52.381 0.00 0.00 0.00 3.16
850 912 2.114616 AGCCTATCAGAGACCCAGTTG 58.885 52.381 0.00 0.00 0.00 3.16
851 913 2.111384 GCCTATCAGAGACCCAGTTGA 58.889 52.381 0.00 0.00 0.00 3.18
852 914 2.501723 GCCTATCAGAGACCCAGTTGAA 59.498 50.000 0.00 0.00 0.00 2.69
853 915 3.680196 GCCTATCAGAGACCCAGTTGAAC 60.680 52.174 0.00 0.00 0.00 3.18
854 916 3.515502 CCTATCAGAGACCCAGTTGAACA 59.484 47.826 0.00 0.00 0.00 3.18
855 917 2.910688 TCAGAGACCCAGTTGAACAC 57.089 50.000 0.00 0.00 0.00 3.32
856 918 1.068588 TCAGAGACCCAGTTGAACACG 59.931 52.381 0.00 0.00 0.00 4.49
857 919 0.393077 AGAGACCCAGTTGAACACGG 59.607 55.000 0.00 0.00 0.00 4.94
858 920 1.227853 AGACCCAGTTGAACACGGC 60.228 57.895 0.00 0.00 0.00 5.68
859 921 1.227853 GACCCAGTTGAACACGGCT 60.228 57.895 0.00 0.00 0.00 5.52
860 922 0.818040 GACCCAGTTGAACACGGCTT 60.818 55.000 0.00 0.00 0.00 4.35
861 923 0.470766 ACCCAGTTGAACACGGCTTA 59.529 50.000 0.00 0.00 0.00 3.09
862 924 0.872388 CCCAGTTGAACACGGCTTAC 59.128 55.000 0.00 0.00 0.00 2.34
863 925 1.542547 CCCAGTTGAACACGGCTTACT 60.543 52.381 0.00 0.00 0.00 2.24
864 926 2.218603 CCAGTTGAACACGGCTTACTT 58.781 47.619 0.00 0.00 0.00 2.24
865 927 2.032030 CCAGTTGAACACGGCTTACTTG 60.032 50.000 0.00 0.00 0.00 3.16
866 928 2.032030 CAGTTGAACACGGCTTACTTGG 60.032 50.000 0.00 0.00 0.00 3.61
867 929 0.948678 TTGAACACGGCTTACTTGGC 59.051 50.000 0.00 0.00 0.00 4.52
868 930 0.887387 TGAACACGGCTTACTTGGCC 60.887 55.000 0.00 0.00 45.57 5.36
869 931 0.605589 GAACACGGCTTACTTGGCCT 60.606 55.000 3.32 0.00 46.73 5.19
870 932 0.688487 AACACGGCTTACTTGGCCTA 59.312 50.000 3.32 0.00 46.73 3.93
871 933 0.036671 ACACGGCTTACTTGGCCTAC 60.037 55.000 3.32 0.00 46.73 3.18
872 934 0.249398 CACGGCTTACTTGGCCTACT 59.751 55.000 3.32 0.00 46.73 2.57
873 935 1.479323 CACGGCTTACTTGGCCTACTA 59.521 52.381 3.32 0.00 46.73 1.82
874 936 2.093869 CACGGCTTACTTGGCCTACTAA 60.094 50.000 3.32 0.00 46.73 2.24
875 937 2.568509 ACGGCTTACTTGGCCTACTAAA 59.431 45.455 3.32 0.00 46.73 1.85
876 938 3.195661 CGGCTTACTTGGCCTACTAAAG 58.804 50.000 3.32 0.39 46.73 1.85
877 939 3.118884 CGGCTTACTTGGCCTACTAAAGA 60.119 47.826 3.32 0.00 46.73 2.52
878 940 4.190001 GGCTTACTTGGCCTACTAAAGAC 58.810 47.826 3.32 0.00 45.57 3.01
879 941 4.190001 GCTTACTTGGCCTACTAAAGACC 58.810 47.826 3.32 0.00 0.00 3.85
880 942 4.767478 CTTACTTGGCCTACTAAAGACCC 58.233 47.826 3.32 0.00 0.00 4.46
881 943 2.627933 ACTTGGCCTACTAAAGACCCA 58.372 47.619 3.32 0.00 0.00 4.51
882 944 2.572104 ACTTGGCCTACTAAAGACCCAG 59.428 50.000 3.32 0.00 30.96 4.45
883 945 2.337359 TGGCCTACTAAAGACCCAGT 57.663 50.000 3.32 0.00 0.00 4.00
884 946 2.627933 TGGCCTACTAAAGACCCAGTT 58.372 47.619 3.32 0.00 0.00 3.16
885 947 2.304761 TGGCCTACTAAAGACCCAGTTG 59.695 50.000 3.32 0.00 0.00 3.16
886 948 2.570302 GGCCTACTAAAGACCCAGTTGA 59.430 50.000 0.00 0.00 0.00 3.18
887 949 3.369576 GGCCTACTAAAGACCCAGTTGAG 60.370 52.174 0.00 0.00 0.00 3.02
888 950 3.863041 CCTACTAAAGACCCAGTTGAGC 58.137 50.000 0.00 0.00 0.00 4.26
889 951 3.260884 CCTACTAAAGACCCAGTTGAGCA 59.739 47.826 0.00 0.00 0.00 4.26
897 959 1.230635 CCCAGTTGAGCACGGTTCAG 61.231 60.000 0.00 0.00 0.00 3.02
899 961 1.299541 CAGTTGAGCACGGTTCAGTT 58.700 50.000 0.00 0.00 0.00 3.16
914 976 1.559682 TCAGTTGGCCCATTAGAGACC 59.440 52.381 0.00 0.00 0.00 3.85
916 978 0.623723 GTTGGCCCATTAGAGACCCA 59.376 55.000 0.00 0.00 0.00 4.51
917 979 0.918983 TTGGCCCATTAGAGACCCAG 59.081 55.000 0.00 0.00 0.00 4.45
918 980 0.253160 TGGCCCATTAGAGACCCAGT 60.253 55.000 0.00 0.00 0.00 4.00
919 981 1.009060 TGGCCCATTAGAGACCCAGTA 59.991 52.381 0.00 0.00 0.00 2.74
920 982 1.694696 GGCCCATTAGAGACCCAGTAG 59.305 57.143 0.00 0.00 0.00 2.57
921 983 2.679082 GCCCATTAGAGACCCAGTAGA 58.321 52.381 0.00 0.00 0.00 2.59
922 984 3.039011 GCCCATTAGAGACCCAGTAGAA 58.961 50.000 0.00 0.00 0.00 2.10
923 985 3.454812 GCCCATTAGAGACCCAGTAGAAA 59.545 47.826 0.00 0.00 0.00 2.52
924 986 4.080526 GCCCATTAGAGACCCAGTAGAAAA 60.081 45.833 0.00 0.00 0.00 2.29
926 988 5.109903 CCATTAGAGACCCAGTAGAAAACG 58.890 45.833 0.00 0.00 0.00 3.60
927 989 4.796038 TTAGAGACCCAGTAGAAAACGG 57.204 45.455 0.00 0.00 0.00 4.44
929 991 1.275573 GAGACCCAGTAGAAAACGGCT 59.724 52.381 0.00 0.00 0.00 5.52
930 992 1.275573 AGACCCAGTAGAAAACGGCTC 59.724 52.381 0.00 0.00 0.00 4.70
931 993 1.001633 GACCCAGTAGAAAACGGCTCA 59.998 52.381 0.00 0.00 0.00 4.26
932 994 1.270678 ACCCAGTAGAAAACGGCTCAC 60.271 52.381 0.00 0.00 0.00 3.51
934 996 2.550208 CCCAGTAGAAAACGGCTCACTT 60.550 50.000 0.00 0.00 0.00 3.16
935 997 2.480419 CCAGTAGAAAACGGCTCACTTG 59.520 50.000 0.00 0.00 0.00 3.16
936 998 2.480419 CAGTAGAAAACGGCTCACTTGG 59.520 50.000 0.00 0.00 0.00 3.61
938 1000 1.594331 AGAAAACGGCTCACTTGGAC 58.406 50.000 0.00 0.00 0.00 4.02
941 1003 0.535102 AAACGGCTCACTTGGACCAG 60.535 55.000 0.00 0.00 0.00 4.00
942 1004 1.696097 AACGGCTCACTTGGACCAGT 61.696 55.000 0.00 0.00 0.00 4.00
943 1005 1.669115 CGGCTCACTTGGACCAGTG 60.669 63.158 14.48 14.48 44.96 3.66
945 1007 0.685097 GGCTCACTTGGACCAGTGTA 59.315 55.000 17.99 8.73 44.10 2.90
946 1008 1.338200 GGCTCACTTGGACCAGTGTAG 60.338 57.143 17.99 15.27 44.10 2.74
947 1009 1.941668 GCTCACTTGGACCAGTGTAGC 60.942 57.143 17.99 18.88 44.10 3.58
948 1010 0.685097 TCACTTGGACCAGTGTAGCC 59.315 55.000 17.99 0.00 44.10 3.93
949 1011 0.321653 CACTTGGACCAGTGTAGCCC 60.322 60.000 13.10 0.00 39.59 5.19
950 1012 1.079127 CTTGGACCAGTGTAGCCCG 60.079 63.158 0.00 0.00 0.00 6.13
951 1013 1.534476 TTGGACCAGTGTAGCCCGA 60.534 57.895 0.00 0.00 0.00 5.14
952 1014 1.823169 TTGGACCAGTGTAGCCCGAC 61.823 60.000 0.00 0.00 0.00 4.79
953 1015 2.577593 GACCAGTGTAGCCCGACC 59.422 66.667 0.00 0.00 0.00 4.79
955 1017 3.000819 CCAGTGTAGCCCGACCCA 61.001 66.667 0.00 0.00 0.00 4.51
956 1018 2.589157 CCAGTGTAGCCCGACCCAA 61.589 63.158 0.00 0.00 0.00 4.12
957 1019 1.602237 CAGTGTAGCCCGACCCAAT 59.398 57.895 0.00 0.00 0.00 3.16
959 1021 0.696501 AGTGTAGCCCGACCCAATTT 59.303 50.000 0.00 0.00 0.00 1.82
961 1023 0.988832 TGTAGCCCGACCCAATTTCT 59.011 50.000 0.00 0.00 0.00 2.52
964 1026 0.698818 AGCCCGACCCAATTTCTCTT 59.301 50.000 0.00 0.00 0.00 2.85
965 1027 0.811281 GCCCGACCCAATTTCTCTTG 59.189 55.000 0.00 0.00 0.00 3.02
966 1028 1.463674 CCCGACCCAATTTCTCTTGG 58.536 55.000 0.00 0.00 44.45 3.61
967 1029 1.271926 CCCGACCCAATTTCTCTTGGT 60.272 52.381 2.46 0.00 43.53 3.67
968 1030 1.812571 CCGACCCAATTTCTCTTGGTG 59.187 52.381 2.46 0.00 43.53 4.17
969 1031 2.504367 CGACCCAATTTCTCTTGGTGT 58.496 47.619 2.46 0.57 43.53 4.16
981 1090 1.968493 TCTTGGTGTTAGCTCGTCCTT 59.032 47.619 0.00 0.00 0.00 3.36
1004 1113 0.411848 CCAAACCCTACCCCCATGTT 59.588 55.000 0.00 0.00 0.00 2.71
1006 1115 1.076350 CAAACCCTACCCCCATGTTCA 59.924 52.381 0.00 0.00 0.00 3.18
1008 1117 1.693799 ACCCTACCCCCATGTTCAAT 58.306 50.000 0.00 0.00 0.00 2.57
1014 1123 1.379710 CCCCATGTTCAATGGCGGA 60.380 57.895 0.00 0.00 37.85 5.54
1017 1126 0.680921 CCATGTTCAATGGCGGAGGT 60.681 55.000 0.00 0.00 31.75 3.85
1060 1169 1.058695 CGACGCCGATGTGTAACTTTC 59.941 52.381 0.00 0.00 36.11 2.62
1074 1183 2.278332 ACTTTCTTCAGAAGCCACCC 57.722 50.000 5.15 0.00 35.21 4.61
1085 1194 2.852449 AGAAGCCACCCAAGAATATCCA 59.148 45.455 0.00 0.00 0.00 3.41
1095 1204 3.181461 CCAAGAATATCCAGAAGCGTCCT 60.181 47.826 0.00 0.00 0.00 3.85
1096 1205 4.039245 CCAAGAATATCCAGAAGCGTCCTA 59.961 45.833 0.00 0.00 0.00 2.94
1131 1240 2.683867 CTCCGATGACGAAGAAGGTAGT 59.316 50.000 0.00 0.00 42.66 2.73
1137 1246 1.183676 ACGAAGAAGGTAGTGGCGGT 61.184 55.000 0.00 0.00 0.00 5.68
1147 1256 1.134521 GTAGTGGCGGTGATGATTCCA 60.135 52.381 0.00 0.00 0.00 3.53
1212 1321 2.234414 CAGCAAGCTCTTCTTCTCCTCT 59.766 50.000 0.00 0.00 31.27 3.69
1216 1325 0.901124 GCTCTTCTTCTCCTCTGCCA 59.099 55.000 0.00 0.00 0.00 4.92
1220 1329 2.301296 TCTTCTTCTCCTCTGCCAACAG 59.699 50.000 0.00 0.00 45.95 3.16
1228 1337 0.533531 CTCTGCCAACAGCTCACACA 60.534 55.000 0.00 0.00 44.10 3.72
1233 1342 1.102809 CCAACAGCTCACACAAGCCA 61.103 55.000 0.00 0.00 43.56 4.75
1235 1344 0.394216 AACAGCTCACACAAGCCACA 60.394 50.000 0.00 0.00 43.56 4.17
1249 1358 1.098712 GCCACACCGTTTCCAGTTCA 61.099 55.000 0.00 0.00 0.00 3.18
1259 1368 1.124780 TTCCAGTTCAAGTCGTCCCA 58.875 50.000 0.00 0.00 0.00 4.37
1298 1407 4.041917 CAACCGCGCCACTGCAAT 62.042 61.111 0.00 0.00 37.32 3.56
1332 1441 1.409064 ACGACATACGACCATGATGCT 59.591 47.619 0.00 0.00 45.77 3.79
1335 1444 1.409064 ACATACGACCATGATGCTCGT 59.591 47.619 18.33 18.33 42.96 4.18
1366 1475 2.033141 GACAGCTCAAGCAGGCCA 59.967 61.111 5.01 0.00 45.16 5.36
1495 1605 3.452786 CGGAGAGAAGGCTGGCGA 61.453 66.667 0.00 0.00 0.00 5.54
1497 1607 2.650116 GGAGAGAAGGCTGGCGACA 61.650 63.158 0.00 0.00 39.59 4.35
1538 1648 1.470051 TAGTGCACATACGCCTCTCA 58.530 50.000 21.04 0.00 0.00 3.27
1565 1675 1.259609 TCGACTACCAACCCGACATT 58.740 50.000 0.00 0.00 0.00 2.71
1586 1696 6.260936 ACATTTGCAAGGATTATAAGGAGACG 59.739 38.462 0.00 0.00 0.00 4.18
1603 1713 1.324740 ACGGGCTATTGTGGCTACGA 61.325 55.000 0.00 0.00 35.44 3.43
1630 1740 3.843632 GCAAGTTCATGCACGACAA 57.156 47.368 0.00 0.00 45.70 3.18
1697 1807 0.882927 CCGAGAAAGCCCACAAACGA 60.883 55.000 0.00 0.00 0.00 3.85
1705 1815 1.296056 GCCCACAAACGACGCATAGT 61.296 55.000 0.00 0.00 0.00 2.12
1723 1833 1.002430 AGTGATGCGTGAGTTGGATGT 59.998 47.619 0.00 0.00 0.00 3.06
1732 1842 4.245660 CGTGAGTTGGATGTTAGTGATGT 58.754 43.478 0.00 0.00 0.00 3.06
1734 1844 5.237815 GTGAGTTGGATGTTAGTGATGTCA 58.762 41.667 0.00 0.00 0.00 3.58
1754 1864 0.116143 AGGCAGAGGAGGAAGACAGT 59.884 55.000 0.00 0.00 0.00 3.55
1757 1867 1.830477 GCAGAGGAGGAAGACAGTGAT 59.170 52.381 0.00 0.00 0.00 3.06
1764 1874 2.750166 GAGGAAGACAGTGATGACGAGA 59.250 50.000 0.00 0.00 0.00 4.04
1766 1876 3.057174 AGGAAGACAGTGATGACGAGAAC 60.057 47.826 0.00 0.00 0.00 3.01
1817 1927 0.845337 AACCCTTTGTTGACCCGGTA 59.155 50.000 0.00 0.00 35.31 4.02
1869 1979 2.500392 TTGCGCATTAAAGGTACCCT 57.500 45.000 12.75 0.00 33.87 4.34
1877 1987 4.380550 GCATTAAAGGTACCCTGCAGTTTC 60.381 45.833 13.81 0.01 32.13 2.78
1891 2001 4.935702 TGCAGTTTCTTCTGATTTTGTGG 58.064 39.130 0.00 0.00 37.61 4.17
2010 2135 5.139727 TGGAACCATGATTGTTTGAGTTCT 58.860 37.500 0.00 0.00 34.13 3.01
2013 2138 6.431234 GGAACCATGATTGTTTGAGTTCTAGT 59.569 38.462 0.00 0.00 34.13 2.57
2017 2142 7.667219 ACCATGATTGTTTGAGTTCTAGTCATT 59.333 33.333 0.00 0.00 0.00 2.57
2057 2182 5.300286 AGCACTTGCACAAGACTTCTAATTT 59.700 36.000 16.95 0.00 45.16 1.82
2079 2204 4.607293 TGGAGATATTGCGTATTCAGCT 57.393 40.909 0.00 0.00 35.28 4.24
2083 2208 5.641209 GGAGATATTGCGTATTCAGCTCAAT 59.359 40.000 0.00 0.00 35.28 2.57
2084 2209 6.148480 GGAGATATTGCGTATTCAGCTCAATT 59.852 38.462 0.00 0.00 35.28 2.32
2085 2210 7.331934 GGAGATATTGCGTATTCAGCTCAATTA 59.668 37.037 0.00 0.00 35.28 1.40
2086 2211 8.783833 AGATATTGCGTATTCAGCTCAATTAT 57.216 30.769 0.00 0.00 35.28 1.28
2087 2212 9.875691 AGATATTGCGTATTCAGCTCAATTATA 57.124 29.630 0.00 0.00 35.28 0.98
2161 2288 4.116747 TGACAATGTGGTGGAAACAAAC 57.883 40.909 0.00 0.00 46.06 2.93
2187 2314 8.706322 TTCTGTATCCATACTAGCTGAATGTA 57.294 34.615 0.00 0.00 34.41 2.29
2255 2383 2.608593 ATGGCCCATATAGCATGCAA 57.391 45.000 21.98 5.05 0.00 4.08
2258 2386 2.173519 GGCCCATATAGCATGCAACAT 58.826 47.619 21.98 12.22 0.00 2.71
2260 2388 3.763360 GGCCCATATAGCATGCAACATTA 59.237 43.478 21.98 2.91 0.00 1.90
2316 2444 8.854614 ATATTTGCTTTGTGAGTTCTTAGAGT 57.145 30.769 0.00 0.00 0.00 3.24
2431 2567 5.499139 AATATTATTCAGTTGGTGCACCG 57.501 39.130 30.07 16.33 39.43 4.94
2482 2618 6.894339 TGATTGCATAGGACTATCTTACGA 57.106 37.500 0.00 0.00 0.00 3.43
2493 2629 1.853963 ATCTTACGACCTGTCCTGCT 58.146 50.000 0.00 0.00 0.00 4.24
2610 2758 2.502142 TGAGGAGCAAGTGCATTCAT 57.498 45.000 6.00 0.00 45.16 2.57
2619 2767 3.488721 GCAAGTGCATTCATAGAGCTTGG 60.489 47.826 9.19 0.00 41.59 3.61
2626 2774 6.261826 GTGCATTCATAGAGCTTGGATAGTTT 59.738 38.462 0.00 0.00 0.00 2.66
2638 2786 8.814038 AGCTTGGATAGTTTGATGACTTATTT 57.186 30.769 0.00 0.00 0.00 1.40
2885 3035 8.012957 AGATCTCCTACTATTGTAACCAACTG 57.987 38.462 0.00 0.00 32.26 3.16
2964 3116 4.082136 GGACACAACAACAACAACCCTTAA 60.082 41.667 0.00 0.00 0.00 1.85
3234 3396 9.073475 GTTAGTCCAGATCTATAGAATGTGAGT 57.927 37.037 6.52 12.12 0.00 3.41
3321 3490 2.824936 CCAGTGCATGGGTCAATTGTAA 59.175 45.455 5.13 0.00 46.36 2.41
3324 3493 3.378112 AGTGCATGGGTCAATTGTAATCG 59.622 43.478 5.13 0.00 0.00 3.34
3368 3601 6.844254 GGTTTATCTAACCGCATTGTAACAA 58.156 36.000 0.00 0.00 46.48 2.83
3471 4058 5.723672 AACTCTCGAGGTTTCATAGTTCA 57.276 39.130 13.56 0.00 0.00 3.18
3472 4059 5.923733 ACTCTCGAGGTTTCATAGTTCAT 57.076 39.130 13.56 0.00 0.00 2.57
3481 4068 9.914131 CGAGGTTTCATAGTTCATAGAATGATA 57.086 33.333 0.00 0.00 39.39 2.15
3532 4119 7.096551 TGACAATCTACATCTGTTGATTTCGA 58.903 34.615 14.53 0.00 44.05 3.71
3610 4197 2.279717 GCAGCGCATGAGATCCGA 60.280 61.111 11.47 0.00 0.00 4.55
3622 4209 4.478206 TGAGATCCGAAAGAAGATTGCT 57.522 40.909 0.00 0.00 0.00 3.91
3698 4285 9.303116 GTATCATGGAGGATTACTTCTCTTCTA 57.697 37.037 0.00 0.00 0.00 2.10
3797 4385 3.763360 TCACCATTAGCCACCAAAATCTG 59.237 43.478 0.00 0.00 0.00 2.90
3817 4405 0.953727 AGCTTCTTGTCGCATTGCAA 59.046 45.000 9.69 0.00 0.00 4.08
3887 4475 5.793457 GTCATTCACATTTACCGCAACTTAC 59.207 40.000 0.00 0.00 0.00 2.34
3931 4520 5.880054 ATTATTTGTCTTGACGGACCTTG 57.120 39.130 0.00 0.00 35.54 3.61
4052 4641 4.348168 ACTGTAGTGACCAGACCTCAAATT 59.652 41.667 0.00 0.00 34.04 1.82
4056 4645 2.480419 GTGACCAGACCTCAAATTGTCG 59.520 50.000 0.00 0.00 36.61 4.35
4124 4713 7.921214 ACACACACAATACTCGAGGATTTATAG 59.079 37.037 20.58 11.60 0.00 1.31
4283 4872 1.190323 GCTGAGTGAAAGACAACGACG 59.810 52.381 0.00 0.00 0.00 5.12
4302 4891 1.133598 CGTATGGCACCTTACTCGTCA 59.866 52.381 10.10 0.00 0.00 4.35
4460 5052 5.782893 TGGTTACAGTTTTGCATAAAGCT 57.217 34.783 0.00 0.00 45.94 3.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.563580 GCTTCTCTTGTTGGACCATGAGTA 60.564 45.833 0.00 0.00 37.68 2.59
2 3 2.746362 GCTTCTCTTGTTGGACCATGAG 59.254 50.000 0.00 1.68 37.75 2.90
4 5 2.486982 CAGCTTCTCTTGTTGGACCATG 59.513 50.000 0.00 0.00 0.00 3.66
5 6 2.107204 ACAGCTTCTCTTGTTGGACCAT 59.893 45.455 0.00 0.00 0.00 3.55
6 7 1.490490 ACAGCTTCTCTTGTTGGACCA 59.510 47.619 0.00 0.00 0.00 4.02
8 9 1.795286 CGACAGCTTCTCTTGTTGGAC 59.205 52.381 0.00 0.00 0.00 4.02
9 10 1.270305 CCGACAGCTTCTCTTGTTGGA 60.270 52.381 5.17 0.00 37.90 3.53
11 12 2.064762 CTCCGACAGCTTCTCTTGTTG 58.935 52.381 0.00 0.00 0.00 3.33
12 13 1.964223 TCTCCGACAGCTTCTCTTGTT 59.036 47.619 0.00 0.00 0.00 2.83
13 14 1.621992 TCTCCGACAGCTTCTCTTGT 58.378 50.000 0.00 0.00 0.00 3.16
16 17 1.110442 CCATCTCCGACAGCTTCTCT 58.890 55.000 0.00 0.00 0.00 3.10
29 30 2.187946 CTCCACCACCGCCATCTC 59.812 66.667 0.00 0.00 0.00 2.75
33 34 3.399181 GATCCTCCACCACCGCCA 61.399 66.667 0.00 0.00 0.00 5.69
35 36 4.530857 CGGATCCTCCACCACCGC 62.531 72.222 10.75 0.00 35.91 5.68
36 37 2.134287 ATCGGATCCTCCACCACCG 61.134 63.158 10.75 0.00 44.09 4.94
67 68 5.049129 CCTTGTCTCCAAGTTGATCTTTCAC 60.049 44.000 3.87 0.00 45.49 3.18
70 71 5.310409 TCCTTGTCTCCAAGTTGATCTTT 57.690 39.130 3.87 0.00 45.49 2.52
81 82 3.504520 GCGGTAATTTTTCCTTGTCTCCA 59.495 43.478 0.00 0.00 0.00 3.86
92 93 5.508994 CCTTCACTTTGAGGCGGTAATTTTT 60.509 40.000 0.00 0.00 0.00 1.94
97 98 1.880646 GCCTTCACTTTGAGGCGGTAA 60.881 52.381 0.00 0.00 33.43 2.85
98 99 0.321298 GCCTTCACTTTGAGGCGGTA 60.321 55.000 0.00 0.00 33.43 4.02
99 100 1.600916 GCCTTCACTTTGAGGCGGT 60.601 57.895 0.00 0.00 33.43 5.68
110 111 0.238553 GTCTTCTTTGCCGCCTTCAC 59.761 55.000 0.00 0.00 0.00 3.18
111 112 1.227999 CGTCTTCTTTGCCGCCTTCA 61.228 55.000 0.00 0.00 0.00 3.02
112 113 0.949105 TCGTCTTCTTTGCCGCCTTC 60.949 55.000 0.00 0.00 0.00 3.46
118 119 1.442769 TGAGCATCGTCTTCTTTGCC 58.557 50.000 0.00 0.00 38.61 4.52
119 120 2.738846 TCTTGAGCATCGTCTTCTTTGC 59.261 45.455 0.00 0.00 38.61 3.68
134 135 1.068954 GTCGGCCTTTTGCTTCTTGAG 60.069 52.381 0.00 0.00 40.92 3.02
135 136 0.951558 GTCGGCCTTTTGCTTCTTGA 59.048 50.000 0.00 0.00 40.92 3.02
176 177 0.972983 CTCCTCCATCCACCACGTCT 60.973 60.000 0.00 0.00 0.00 4.18
178 179 2.660064 GCTCCTCCATCCACCACGT 61.660 63.158 0.00 0.00 0.00 4.49
211 212 1.278172 CGATCAGCGACAATAGCGGG 61.278 60.000 0.00 0.00 44.57 6.13
213 214 0.500178 CACGATCAGCGACAATAGCG 59.500 55.000 0.00 0.00 44.57 4.26
214 215 1.560923 ACACGATCAGCGACAATAGC 58.439 50.000 0.00 0.00 44.57 2.97
234 235 0.542467 ATGCTTTGGACATGGTGGCA 60.542 50.000 0.00 0.00 0.00 4.92
236 237 2.824936 TGTAATGCTTTGGACATGGTGG 59.175 45.455 0.00 0.00 0.00 4.61
237 238 4.218200 TCTTGTAATGCTTTGGACATGGTG 59.782 41.667 0.00 0.00 0.00 4.17
238 239 4.218417 GTCTTGTAATGCTTTGGACATGGT 59.782 41.667 0.00 0.00 0.00 3.55
248 251 4.862641 AGTATGGGGTCTTGTAATGCTT 57.137 40.909 0.00 0.00 0.00 3.91
256 259 4.679662 CGTTGTAGTAGTATGGGGTCTTG 58.320 47.826 0.00 0.00 0.00 3.02
260 263 1.758862 GGCGTTGTAGTAGTATGGGGT 59.241 52.381 0.00 0.00 0.00 4.95
264 267 3.517602 TGCTTGGCGTTGTAGTAGTATG 58.482 45.455 0.00 0.00 0.00 2.39
265 268 3.782046 CTGCTTGGCGTTGTAGTAGTAT 58.218 45.455 0.00 0.00 0.00 2.12
275 278 3.234630 TACCGAGCTGCTTGGCGTT 62.235 57.895 31.39 17.38 38.56 4.84
276 279 3.649277 CTACCGAGCTGCTTGGCGT 62.649 63.158 31.39 18.05 38.56 5.68
296 299 1.366435 AGTGGAGGATACCAGGGACTT 59.634 52.381 0.00 0.00 40.85 3.01
297 300 1.019650 AGTGGAGGATACCAGGGACT 58.980 55.000 0.00 0.00 40.85 3.85
305 308 2.029838 CACTTGCCAGTGGAGGATAC 57.970 55.000 15.20 0.00 46.10 2.24
338 343 2.397754 CGATGGCACCGCATTGACA 61.398 57.895 0.00 0.00 39.45 3.58
353 358 5.527214 TGATGAACAATCCGATAAAAGCGAT 59.473 36.000 0.00 0.00 34.00 4.58
354 359 4.873259 TGATGAACAATCCGATAAAAGCGA 59.127 37.500 0.00 0.00 34.00 4.93
356 361 6.074676 GCAATGATGAACAATCCGATAAAAGC 60.075 38.462 0.00 0.00 34.00 3.51
357 362 6.974048 TGCAATGATGAACAATCCGATAAAAG 59.026 34.615 0.00 0.00 34.00 2.27
358 363 6.861144 TGCAATGATGAACAATCCGATAAAA 58.139 32.000 0.00 0.00 34.00 1.52
359 364 6.448207 TGCAATGATGAACAATCCGATAAA 57.552 33.333 0.00 0.00 34.00 1.40
360 365 5.506151 GCTGCAATGATGAACAATCCGATAA 60.506 40.000 0.00 0.00 34.00 1.75
361 366 4.023792 GCTGCAATGATGAACAATCCGATA 60.024 41.667 0.00 0.00 34.00 2.92
362 367 3.243301 GCTGCAATGATGAACAATCCGAT 60.243 43.478 0.00 0.00 34.00 4.18
363 368 2.097954 GCTGCAATGATGAACAATCCGA 59.902 45.455 0.00 0.00 34.00 4.55
364 369 2.098607 AGCTGCAATGATGAACAATCCG 59.901 45.455 1.02 0.00 34.00 4.18
365 370 3.795623 AGCTGCAATGATGAACAATCC 57.204 42.857 1.02 0.00 34.00 3.01
366 371 4.561606 GTCAAGCTGCAATGATGAACAATC 59.438 41.667 10.64 0.00 35.67 2.67
367 372 4.219944 AGTCAAGCTGCAATGATGAACAAT 59.780 37.500 10.64 0.00 0.00 2.71
368 373 3.570975 AGTCAAGCTGCAATGATGAACAA 59.429 39.130 10.64 0.00 0.00 2.83
369 374 3.057806 CAGTCAAGCTGCAATGATGAACA 60.058 43.478 10.64 0.00 38.52 3.18
370 375 3.499048 CAGTCAAGCTGCAATGATGAAC 58.501 45.455 10.64 0.64 38.52 3.18
371 376 2.490509 CCAGTCAAGCTGCAATGATGAA 59.509 45.455 10.64 0.00 43.71 2.57
372 377 2.089201 CCAGTCAAGCTGCAATGATGA 58.911 47.619 10.64 0.80 43.71 2.92
373 378 2.089201 TCCAGTCAAGCTGCAATGATG 58.911 47.619 10.64 9.68 43.71 3.07
374 379 2.089980 GTCCAGTCAAGCTGCAATGAT 58.910 47.619 10.64 0.00 43.71 2.45
375 380 1.202794 TGTCCAGTCAAGCTGCAATGA 60.203 47.619 1.02 3.00 43.71 2.57
376 381 1.241165 TGTCCAGTCAAGCTGCAATG 58.759 50.000 1.02 0.21 43.71 2.82
377 382 2.089980 GATGTCCAGTCAAGCTGCAAT 58.910 47.619 1.02 0.00 43.71 3.56
378 383 1.527034 GATGTCCAGTCAAGCTGCAA 58.473 50.000 1.02 0.00 43.71 4.08
379 384 0.671472 CGATGTCCAGTCAAGCTGCA 60.671 55.000 1.02 0.00 43.71 4.41
389 394 1.139734 CTCCACGACCGATGTCCAG 59.860 63.158 0.00 0.00 38.32 3.86
390 395 0.322726 TACTCCACGACCGATGTCCA 60.323 55.000 0.00 0.00 38.32 4.02
395 400 1.880675 CATAGCTACTCCACGACCGAT 59.119 52.381 0.00 0.00 0.00 4.18
399 404 1.536284 GGCACATAGCTACTCCACGAC 60.536 57.143 0.00 0.00 44.79 4.34
400 405 0.744874 GGCACATAGCTACTCCACGA 59.255 55.000 0.00 0.00 44.79 4.35
408 413 0.830648 GGTGTGGAGGCACATAGCTA 59.169 55.000 0.00 0.00 44.79 3.32
413 418 1.302511 GAACGGTGTGGAGGCACAT 60.303 57.895 0.00 0.00 40.89 3.21
414 419 2.050836 ATGAACGGTGTGGAGGCACA 62.051 55.000 0.00 0.00 40.89 4.57
420 425 2.705730 CATACCAATGAACGGTGTGGA 58.294 47.619 1.55 0.00 40.79 4.02
421 426 1.132262 GCATACCAATGAACGGTGTGG 59.868 52.381 7.97 0.00 43.67 4.17
424 429 1.750193 AGGCATACCAATGAACGGTG 58.250 50.000 0.00 0.00 37.33 4.94
425 430 3.637911 TTAGGCATACCAATGAACGGT 57.362 42.857 0.00 0.00 40.73 4.83
427 432 3.546020 CGCTTTAGGCATACCAATGAACG 60.546 47.826 0.00 0.00 41.91 3.95
458 463 2.293677 TGTCTGCATCATCGTACACC 57.706 50.000 0.00 0.00 0.00 4.16
460 465 3.799281 TCATGTCTGCATCATCGTACA 57.201 42.857 0.00 0.00 31.99 2.90
467 472 5.005094 TCAAACATCTTCATGTCTGCATCA 58.995 37.500 0.00 0.00 42.89 3.07
473 478 6.766944 GGATCATCTCAAACATCTTCATGTCT 59.233 38.462 0.00 0.00 42.89 3.41
499 504 1.407258 CCTCCTCCTCGACTTCATCAC 59.593 57.143 0.00 0.00 0.00 3.06
500 505 1.006043 ACCTCCTCCTCGACTTCATCA 59.994 52.381 0.00 0.00 0.00 3.07
503 508 1.893801 GAAACCTCCTCCTCGACTTCA 59.106 52.381 0.00 0.00 0.00 3.02
506 511 3.053544 TCATAGAAACCTCCTCCTCGACT 60.054 47.826 0.00 0.00 0.00 4.18
508 513 3.556999 CTCATAGAAACCTCCTCCTCGA 58.443 50.000 0.00 0.00 0.00 4.04
515 520 1.413077 CCCGTCCTCATAGAAACCTCC 59.587 57.143 0.00 0.00 0.00 4.30
526 531 0.686441 CATCCACCTACCCGTCCTCA 60.686 60.000 0.00 0.00 0.00 3.86
533 538 1.486726 CTCCAAGTCATCCACCTACCC 59.513 57.143 0.00 0.00 0.00 3.69
535 540 1.134371 GGCTCCAAGTCATCCACCTAC 60.134 57.143 0.00 0.00 0.00 3.18
536 541 1.204146 GGCTCCAAGTCATCCACCTA 58.796 55.000 0.00 0.00 0.00 3.08
539 544 0.678048 GTGGGCTCCAAGTCATCCAC 60.678 60.000 0.00 0.00 37.98 4.02
559 564 2.345991 GTGTGTGAGGCGGCCTTA 59.654 61.111 24.71 17.31 31.76 2.69
566 571 1.898574 CCAACTGGGTGTGTGAGGC 60.899 63.158 0.00 0.00 0.00 4.70
567 572 4.481195 CCAACTGGGTGTGTGAGG 57.519 61.111 0.00 0.00 0.00 3.86
580 585 0.175073 CGGACTAGGTGTAGCCCAAC 59.825 60.000 0.00 0.00 38.26 3.77
581 586 0.974010 CCGGACTAGGTGTAGCCCAA 60.974 60.000 0.00 0.00 38.26 4.12
593 598 0.615261 TGGGTGTACATGCCGGACTA 60.615 55.000 5.05 0.00 0.00 2.59
598 603 1.449601 GGACTGGGTGTACATGCCG 60.450 63.158 0.00 0.00 0.00 5.69
609 614 2.821366 GCTGCATGTCGGACTGGG 60.821 66.667 9.88 0.15 0.00 4.45
616 621 4.529219 TAGCCCGGCTGCATGTCG 62.529 66.667 22.95 3.60 44.42 4.35
618 623 3.716195 TGTAGCCCGGCTGCATGT 61.716 61.111 24.74 0.00 45.44 3.21
641 646 4.509616 TGTGGTTATGTTTCTATGTCGGG 58.490 43.478 0.00 0.00 0.00 5.14
648 653 6.459923 GCCCAATTTTGTGGTTATGTTTCTA 58.540 36.000 0.00 0.00 36.90 2.10
649 654 5.304778 GCCCAATTTTGTGGTTATGTTTCT 58.695 37.500 0.00 0.00 36.90 2.52
650 655 4.454161 GGCCCAATTTTGTGGTTATGTTTC 59.546 41.667 0.00 0.00 36.90 2.78
652 657 3.556004 CGGCCCAATTTTGTGGTTATGTT 60.556 43.478 0.00 0.00 36.90 2.71
655 660 1.066502 GCGGCCCAATTTTGTGGTTAT 60.067 47.619 0.00 0.00 36.90 1.89
656 661 0.318762 GCGGCCCAATTTTGTGGTTA 59.681 50.000 0.00 0.00 36.90 2.85
662 667 3.377759 TCCGGCGGCCCAATTTTG 61.378 61.111 23.83 0.00 0.00 2.44
675 698 2.435586 CTTGCTCCTGCTGTCCGG 60.436 66.667 0.00 0.00 40.48 5.14
695 718 2.721971 ATCATCATCGTCGCTGCCCC 62.722 60.000 0.00 0.00 0.00 5.80
696 719 1.287730 GATCATCATCGTCGCTGCCC 61.288 60.000 0.00 0.00 0.00 5.36
699 722 2.997485 TAGGATCATCATCGTCGCTG 57.003 50.000 0.00 0.00 0.00 5.18
700 723 4.527509 AAATAGGATCATCATCGTCGCT 57.472 40.909 0.00 0.00 0.00 4.93
726 787 1.798223 CATCGCCGTTCAACTCAAAGA 59.202 47.619 0.00 0.00 0.00 2.52
727 788 1.798223 TCATCGCCGTTCAACTCAAAG 59.202 47.619 0.00 0.00 0.00 2.77
729 790 1.999735 GATCATCGCCGTTCAACTCAA 59.000 47.619 0.00 0.00 0.00 3.02
731 792 1.640428 TGATCATCGCCGTTCAACTC 58.360 50.000 0.00 0.00 0.00 3.01
732 793 2.205074 GATGATCATCGCCGTTCAACT 58.795 47.619 19.55 0.00 0.00 3.16
733 794 2.652662 GATGATCATCGCCGTTCAAC 57.347 50.000 19.55 0.00 0.00 3.18
765 826 9.595823 CTTCTGCAAATTATGATGATCCTTTTT 57.404 29.630 0.00 0.00 0.00 1.94
766 827 8.202137 CCTTCTGCAAATTATGATGATCCTTTT 58.798 33.333 0.00 0.00 0.00 2.27
767 828 7.343833 ACCTTCTGCAAATTATGATGATCCTTT 59.656 33.333 0.00 0.00 0.00 3.11
768 829 6.837568 ACCTTCTGCAAATTATGATGATCCTT 59.162 34.615 0.00 0.00 0.00 3.36
795 856 0.240945 AGTGCGCTTACATGGTTTGC 59.759 50.000 9.73 0.00 0.00 3.68
801 862 1.378882 ATGCCCAGTGCGCTTACATG 61.379 55.000 9.73 0.00 45.60 3.21
812 873 1.845627 CTGGTCTGTCCATGCCCAGT 61.846 60.000 9.00 0.00 46.12 4.00
814 875 3.080641 CTGGTCTGTCCATGCCCA 58.919 61.111 0.00 0.00 46.12 5.36
817 879 0.471617 ATAGGCTGGTCTGTCCATGC 59.528 55.000 0.00 1.17 46.12 4.06
819 881 2.045524 CTGATAGGCTGGTCTGTCCAT 58.954 52.381 0.00 0.00 46.12 3.41
823 885 2.383855 GTCTCTGATAGGCTGGTCTGT 58.616 52.381 0.00 0.00 0.00 3.41
834 896 3.056821 CGTGTTCAACTGGGTCTCTGATA 60.057 47.826 0.00 0.00 0.00 2.15
845 907 2.032030 CCAAGTAAGCCGTGTTCAACTG 60.032 50.000 0.00 0.00 0.00 3.16
846 908 2.218603 CCAAGTAAGCCGTGTTCAACT 58.781 47.619 0.00 0.00 0.00 3.16
847 909 1.334689 GCCAAGTAAGCCGTGTTCAAC 60.335 52.381 0.00 0.00 0.00 3.18
848 910 0.948678 GCCAAGTAAGCCGTGTTCAA 59.051 50.000 0.00 0.00 0.00 2.69
849 911 0.887387 GGCCAAGTAAGCCGTGTTCA 60.887 55.000 0.00 0.00 41.41 3.18
850 912 1.873863 GGCCAAGTAAGCCGTGTTC 59.126 57.895 0.00 0.00 41.41 3.18
851 913 4.074647 GGCCAAGTAAGCCGTGTT 57.925 55.556 0.00 0.00 41.41 3.32
866 928 3.863041 CTCAACTGGGTCTTTAGTAGGC 58.137 50.000 0.00 0.00 0.00 3.93
867 929 3.260884 TGCTCAACTGGGTCTTTAGTAGG 59.739 47.826 0.00 0.00 0.00 3.18
868 930 4.246458 GTGCTCAACTGGGTCTTTAGTAG 58.754 47.826 0.00 0.00 0.00 2.57
869 931 3.305813 CGTGCTCAACTGGGTCTTTAGTA 60.306 47.826 0.00 0.00 0.00 1.82
870 932 2.548067 CGTGCTCAACTGGGTCTTTAGT 60.548 50.000 0.00 0.00 0.00 2.24
871 933 2.069273 CGTGCTCAACTGGGTCTTTAG 58.931 52.381 0.00 0.00 0.00 1.85
872 934 1.270625 CCGTGCTCAACTGGGTCTTTA 60.271 52.381 0.00 0.00 0.00 1.85
873 935 0.535102 CCGTGCTCAACTGGGTCTTT 60.535 55.000 0.00 0.00 0.00 2.52
874 936 1.071471 CCGTGCTCAACTGGGTCTT 59.929 57.895 0.00 0.00 0.00 3.01
875 937 1.696097 AACCGTGCTCAACTGGGTCT 61.696 55.000 0.00 0.00 0.00 3.85
876 938 1.227853 AACCGTGCTCAACTGGGTC 60.228 57.895 0.00 0.00 0.00 4.46
877 939 1.227853 GAACCGTGCTCAACTGGGT 60.228 57.895 0.00 0.00 0.00 4.51
878 940 1.227823 TGAACCGTGCTCAACTGGG 60.228 57.895 0.00 0.00 0.00 4.45
879 941 0.532862 ACTGAACCGTGCTCAACTGG 60.533 55.000 0.00 0.00 0.00 4.00
880 942 1.003545 CAACTGAACCGTGCTCAACTG 60.004 52.381 0.00 0.00 0.00 3.16
881 943 1.299541 CAACTGAACCGTGCTCAACT 58.700 50.000 0.00 0.00 0.00 3.16
882 944 0.307760 CCAACTGAACCGTGCTCAAC 59.692 55.000 0.00 0.00 0.00 3.18
883 945 1.444119 GCCAACTGAACCGTGCTCAA 61.444 55.000 0.00 0.00 0.00 3.02
884 946 1.891919 GCCAACTGAACCGTGCTCA 60.892 57.895 0.00 0.00 0.00 4.26
885 947 2.617274 GGCCAACTGAACCGTGCTC 61.617 63.158 0.00 0.00 0.00 4.26
886 948 2.594592 GGCCAACTGAACCGTGCT 60.595 61.111 0.00 0.00 0.00 4.40
887 949 3.670377 GGGCCAACTGAACCGTGC 61.670 66.667 4.39 0.00 0.00 5.34
888 950 1.178534 AATGGGCCAACTGAACCGTG 61.179 55.000 11.89 0.00 0.00 4.94
889 951 0.402504 TAATGGGCCAACTGAACCGT 59.597 50.000 11.89 0.00 0.00 4.83
897 959 0.623723 TGGGTCTCTAATGGGCCAAC 59.376 55.000 11.89 1.99 0.00 3.77
899 961 0.253160 ACTGGGTCTCTAATGGGCCA 60.253 55.000 9.61 9.61 0.00 5.36
914 976 2.457366 AGTGAGCCGTTTTCTACTGG 57.543 50.000 0.00 0.00 0.00 4.00
916 978 2.367567 TCCAAGTGAGCCGTTTTCTACT 59.632 45.455 0.00 0.00 0.00 2.57
917 979 2.479275 GTCCAAGTGAGCCGTTTTCTAC 59.521 50.000 0.00 0.00 0.00 2.59
918 980 2.549349 GGTCCAAGTGAGCCGTTTTCTA 60.549 50.000 0.00 0.00 35.38 2.10
919 981 1.594331 GTCCAAGTGAGCCGTTTTCT 58.406 50.000 0.00 0.00 0.00 2.52
920 982 0.591659 GGTCCAAGTGAGCCGTTTTC 59.408 55.000 0.00 0.00 35.38 2.29
921 983 0.106918 TGGTCCAAGTGAGCCGTTTT 60.107 50.000 0.00 0.00 40.88 2.43
922 984 0.535102 CTGGTCCAAGTGAGCCGTTT 60.535 55.000 0.00 0.00 40.88 3.60
923 985 1.071471 CTGGTCCAAGTGAGCCGTT 59.929 57.895 0.00 0.00 40.88 4.44
924 986 2.140792 ACTGGTCCAAGTGAGCCGT 61.141 57.895 0.00 0.00 40.88 5.68
931 993 1.827399 CGGGCTACACTGGTCCAAGT 61.827 60.000 0.00 0.00 0.00 3.16
932 994 1.079127 CGGGCTACACTGGTCCAAG 60.079 63.158 0.00 0.00 0.00 3.61
934 996 2.118732 TCGGGCTACACTGGTCCA 59.881 61.111 0.00 0.00 0.00 4.02
935 997 2.577593 GTCGGGCTACACTGGTCC 59.422 66.667 0.00 0.00 0.00 4.46
936 998 2.577593 GGTCGGGCTACACTGGTC 59.422 66.667 0.00 0.00 0.00 4.02
938 1000 1.910580 ATTGGGTCGGGCTACACTGG 61.911 60.000 0.00 0.00 0.00 4.00
941 1003 1.092348 GAAATTGGGTCGGGCTACAC 58.908 55.000 0.00 0.00 0.00 2.90
942 1004 0.988832 AGAAATTGGGTCGGGCTACA 59.011 50.000 0.00 0.00 0.00 2.74
943 1005 1.209747 AGAGAAATTGGGTCGGGCTAC 59.790 52.381 0.00 0.00 0.00 3.58
945 1007 0.698818 AAGAGAAATTGGGTCGGGCT 59.301 50.000 0.00 0.00 0.00 5.19
946 1008 0.811281 CAAGAGAAATTGGGTCGGGC 59.189 55.000 0.00 0.00 0.00 6.13
947 1009 1.463674 CCAAGAGAAATTGGGTCGGG 58.536 55.000 0.00 0.00 45.07 5.14
955 1017 4.642429 ACGAGCTAACACCAAGAGAAATT 58.358 39.130 0.00 0.00 0.00 1.82
956 1018 4.246458 GACGAGCTAACACCAAGAGAAAT 58.754 43.478 0.00 0.00 0.00 2.17
957 1019 3.554337 GGACGAGCTAACACCAAGAGAAA 60.554 47.826 0.00 0.00 0.00 2.52
959 1021 1.544691 GGACGAGCTAACACCAAGAGA 59.455 52.381 0.00 0.00 0.00 3.10
961 1023 1.629043 AGGACGAGCTAACACCAAGA 58.371 50.000 0.00 0.00 0.00 3.02
964 1026 0.606604 GGAAGGACGAGCTAACACCA 59.393 55.000 0.00 0.00 0.00 4.17
965 1027 0.108281 GGGAAGGACGAGCTAACACC 60.108 60.000 0.00 0.00 0.00 4.16
966 1028 0.108281 GGGGAAGGACGAGCTAACAC 60.108 60.000 0.00 0.00 0.00 3.32
967 1029 1.262640 GGGGGAAGGACGAGCTAACA 61.263 60.000 0.00 0.00 0.00 2.41
968 1030 1.262640 TGGGGGAAGGACGAGCTAAC 61.263 60.000 0.00 0.00 0.00 2.34
969 1031 0.545787 TTGGGGGAAGGACGAGCTAA 60.546 55.000 0.00 0.00 0.00 3.09
981 1090 2.204338 GGGGTAGGGTTTGGGGGA 60.204 66.667 0.00 0.00 0.00 4.81
1004 1113 4.776322 CGCCACCTCCGCCATTGA 62.776 66.667 0.00 0.00 0.00 2.57
1006 1115 4.473520 CTCGCCACCTCCGCCATT 62.474 66.667 0.00 0.00 0.00 3.16
1042 1151 2.450609 AGAAAGTTACACATCGGCGT 57.549 45.000 6.85 0.00 0.00 5.68
1060 1169 2.276732 TTCTTGGGTGGCTTCTGAAG 57.723 50.000 13.02 13.02 0.00 3.02
1074 1183 4.065321 AGGACGCTTCTGGATATTCTTG 57.935 45.455 0.00 0.00 0.00 3.02
1113 1222 2.798680 CCACTACCTTCTTCGTCATCG 58.201 52.381 0.00 0.00 38.55 3.84
1131 1240 1.224315 CCTGGAATCATCACCGCCA 59.776 57.895 0.00 0.00 0.00 5.69
1137 1246 0.109153 CGATGGCCCTGGAATCATCA 59.891 55.000 0.00 1.06 36.68 3.07
1162 1271 1.589196 GCGGCTTCTTAGATCGCGT 60.589 57.895 5.77 0.00 36.45 6.01
1212 1321 1.727511 GCTTGTGTGAGCTGTTGGCA 61.728 55.000 0.00 0.00 44.79 4.92
1216 1325 0.394216 TGTGGCTTGTGTGAGCTGTT 60.394 50.000 0.00 0.00 42.32 3.16
1220 1329 2.896801 CGGTGTGGCTTGTGTGAGC 61.897 63.158 0.00 0.00 41.96 4.26
1228 1337 4.157607 CTGGAAACGGTGTGGCTT 57.842 55.556 0.00 0.00 0.00 4.35
1259 1368 1.187087 GGTGGAGGACTGAATCGTCT 58.813 55.000 5.53 0.00 41.22 4.18
1296 1405 1.025113 TCGTCTCCGTCTCGAGCATT 61.025 55.000 7.81 0.00 35.01 3.56
1298 1407 2.047560 TCGTCTCCGTCTCGAGCA 60.048 61.111 7.81 0.00 35.01 4.26
1325 1434 1.596203 CGGATGGCACGAGCATCAT 60.596 57.895 7.26 1.51 44.61 2.45
1414 1524 1.830145 CCGTGGATCCCCTTGTAGG 59.170 63.158 9.90 0.00 34.30 3.18
1453 1563 2.738213 CTTGTGCTCCCGCCTGAAGT 62.738 60.000 0.00 0.00 34.43 3.01
1471 1581 0.545548 AGCCTTCTCTCCGGAAACCT 60.546 55.000 5.23 0.00 0.00 3.50
1515 1625 0.528924 AGGCGTATGTGCACTAACGA 59.471 50.000 33.59 11.78 37.53 3.85
1519 1629 1.470051 TGAGAGGCGTATGTGCACTA 58.530 50.000 19.41 4.84 36.28 2.74
1538 1648 0.940991 GTTGGTAGTCGAACCGCGTT 60.941 55.000 4.92 0.00 42.91 4.84
1565 1675 4.444306 CCCGTCTCCTTATAATCCTTGCAA 60.444 45.833 0.00 0.00 0.00 4.08
1586 1696 0.874607 CGTCGTAGCCACAATAGCCC 60.875 60.000 0.00 0.00 0.00 5.19
1603 1713 1.470098 GCATGAACTTGCAGGAATCGT 59.530 47.619 1.40 0.00 42.31 3.73
1705 1815 2.183478 AACATCCAACTCACGCATCA 57.817 45.000 0.00 0.00 0.00 3.07
1723 1833 3.173151 TCCTCTGCCTTGACATCACTAA 58.827 45.455 0.00 0.00 0.00 2.24
1732 1842 1.270907 GTCTTCCTCCTCTGCCTTGA 58.729 55.000 0.00 0.00 0.00 3.02
1734 1844 1.274712 CTGTCTTCCTCCTCTGCCTT 58.725 55.000 0.00 0.00 0.00 4.35
1754 1864 1.008875 GCAGTGCGTTCTCGTCATCA 61.009 55.000 0.00 0.00 39.49 3.07
1757 1867 2.355837 GGCAGTGCGTTCTCGTCA 60.356 61.111 9.45 0.00 39.49 4.35
1817 1927 8.292448 CAGAAATAATGCTTACACTTTGTGACT 58.708 33.333 4.61 0.00 36.96 3.41
1869 1979 4.402155 ACCACAAAATCAGAAGAAACTGCA 59.598 37.500 0.00 0.00 37.75 4.41
1877 1987 8.437742 GCAAAATTATCACCACAAAATCAGAAG 58.562 33.333 0.00 0.00 0.00 2.85
1891 2001 8.233190 GCATAGATGAGTAGGCAAAATTATCAC 58.767 37.037 0.00 0.00 30.00 3.06
1965 2075 8.397575 TCCATGTTACAAACAAACTATTAGCA 57.602 30.769 0.00 0.00 45.86 3.49
1979 2089 6.662865 AACAATCATGGTTCCATGTTACAA 57.337 33.333 25.06 10.95 42.96 2.41
2017 2142 8.020819 GTGCAAGTGCTAATGTTTCAATAGTTA 58.979 33.333 4.69 0.00 42.66 2.24
2057 2182 4.960938 AGCTGAATACGCAATATCTCCAA 58.039 39.130 0.00 0.00 0.00 3.53
2142 2269 4.466015 AGAAGTTTGTTTCCACCACATTGT 59.534 37.500 0.00 0.00 0.00 2.71
2145 2272 4.023291 ACAGAAGTTTGTTTCCACCACAT 58.977 39.130 0.00 0.00 0.00 3.21
2187 2314 7.530426 AACATTCAGCTAGTCCAAAGAAAAT 57.470 32.000 0.00 0.00 0.00 1.82
2192 2319 6.076981 ACAAAACATTCAGCTAGTCCAAAG 57.923 37.500 0.00 0.00 0.00 2.77
2298 2426 7.041712 GGAAGGAAACTCTAAGAACTCACAAAG 60.042 40.741 0.00 0.00 42.68 2.77
2376 2512 1.858091 GGTCATGCATGGTACTCTCG 58.142 55.000 25.97 0.00 0.00 4.04
2420 2556 0.454196 AACAGAAACGGTGCACCAAC 59.546 50.000 34.16 20.70 35.14 3.77
2482 2618 2.584835 TATTTGCAAGCAGGACAGGT 57.415 45.000 0.00 0.00 0.00 4.00
2580 2728 4.337555 CACTTGCTCCTCAATATCAAAGGG 59.662 45.833 0.00 0.00 33.57 3.95
2610 2758 6.798427 AGTCATCAAACTATCCAAGCTCTA 57.202 37.500 0.00 0.00 0.00 2.43
2626 2774 8.737175 ACGTAGAGACTAACAAATAAGTCATCA 58.263 33.333 5.38 0.00 43.74 3.07
2638 2786 6.370994 CACTTCCTAGAACGTAGAGACTAACA 59.629 42.308 0.00 0.00 0.00 2.41
2881 3031 3.710165 GAGGGCTAGGGTTACATACAGTT 59.290 47.826 0.00 0.00 0.00 3.16
2885 3035 2.898612 GGAGAGGGCTAGGGTTACATAC 59.101 54.545 0.00 0.00 0.00 2.39
2964 3116 6.694445 AGAAGCTAGCCTATGGTATGATTT 57.306 37.500 12.13 0.00 0.00 2.17
3197 3349 2.837591 TCTGGACTAACTATGCAAGCCA 59.162 45.455 0.00 0.00 0.00 4.75
3234 3396 6.872020 CAGAATTTACGTTTCCAGACTCCTTA 59.128 38.462 0.00 0.00 0.00 2.69
3351 3579 6.660722 TGTTAGTTTGTTACAATGCGGTTAG 58.339 36.000 0.00 0.00 0.00 2.34
3471 4058 9.511272 TTGCAATATGAGCAACTATCATTCTAT 57.489 29.630 10.76 0.00 46.13 1.98
3472 4059 8.907222 TTGCAATATGAGCAACTATCATTCTA 57.093 30.769 10.76 0.00 46.13 2.10
3516 4103 5.240891 AGTGATGTCGAAATCAACAGATGT 58.759 37.500 19.84 0.00 38.28 3.06
3532 4119 5.334414 GCATTTCTTGTTCTTCGAGTGATGT 60.334 40.000 0.00 0.00 0.00 3.06
3610 4197 4.978099 TCTTGTCCTGAGCAATCTTCTTT 58.022 39.130 0.00 0.00 0.00 2.52
3622 4209 0.035881 CCTGCTGCTTCTTGTCCTGA 59.964 55.000 0.00 0.00 0.00 3.86
3797 4385 0.518636 TGCAATGCGACAAGAAGCTC 59.481 50.000 0.00 0.00 0.00 4.09
3817 4405 2.079158 CGACATGATGACACAGGCTTT 58.921 47.619 0.00 0.00 0.00 3.51
3887 4475 2.493278 ACCTCCGCAAAGATCCATTTTG 59.507 45.455 2.38 2.38 38.30 2.44
4017 4606 4.421948 GTCACTACAGTAATTCCAGACGG 58.578 47.826 0.00 0.00 0.00 4.79
4052 4641 1.185315 TGATGCACAGAGATCCGACA 58.815 50.000 0.00 0.00 0.00 4.35
4124 4713 0.371645 GTGCGTGATTGCTACTCTGC 59.628 55.000 0.00 0.00 35.36 4.26
4283 4872 2.953466 TGACGAGTAAGGTGCCATAC 57.047 50.000 0.00 0.00 0.00 2.39
4302 4891 6.395426 TTTCATGTTGCAGACTTTTCAGAT 57.605 33.333 0.00 0.00 0.00 2.90
4581 5174 9.591792 CATGTTGATCTCATCACTCTAAAGTAA 57.408 33.333 0.00 0.00 39.39 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.