Multiple sequence alignment - TraesCS4B01G221400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G221400 chr4B 100.000 7898 0 0 1 7898 465730837 465738734 0.000000e+00 14585.0
1 TraesCS4B01G221400 chr4B 87.944 1435 138 9 4177 5594 649476156 649477572 0.000000e+00 1659.0
2 TraesCS4B01G221400 chr4B 83.401 247 30 4 3694 3940 553607370 553607135 1.330000e-52 219.0
3 TraesCS4B01G221400 chr4B 100.000 81 0 0 4034 4114 422776375 422776455 4.940000e-32 150.0
4 TraesCS4B01G221400 chr4B 94.382 89 2 1 1394 1482 477150244 477150329 4.970000e-27 134.0
5 TraesCS4B01G221400 chr4B 95.238 84 1 1 1398 1481 477150328 477150248 6.430000e-26 130.0
6 TraesCS4B01G221400 chr4B 92.308 91 4 1 1392 1482 653543912 653543825 8.320000e-25 126.0
7 TraesCS4B01G221400 chr4B 89.888 89 7 2 2405 2491 660420356 660420268 6.480000e-21 113.0
8 TraesCS4B01G221400 chr4B 89.888 89 7 2 2405 2491 660449664 660449576 6.480000e-21 113.0
9 TraesCS4B01G221400 chr4B 90.588 85 5 3 2404 2487 604049701 604049619 8.380000e-20 110.0
10 TraesCS4B01G221400 chr4B 96.774 62 1 1 4094 4154 422776456 422776517 1.400000e-17 102.0
11 TraesCS4B01G221400 chr4B 100.000 38 0 0 4139 4176 422776513 422776550 3.950000e-08 71.3
12 TraesCS4B01G221400 chr4D 93.508 1987 81 15 5638 7609 379149434 379151387 0.000000e+00 2911.0
13 TraesCS4B01G221400 chr4D 92.806 1404 62 22 1479 2863 379147829 379149212 0.000000e+00 1997.0
14 TraesCS4B01G221400 chr4D 94.438 845 35 4 3 837 379146350 379147192 0.000000e+00 1290.0
15 TraesCS4B01G221400 chr4D 95.374 562 18 3 839 1399 379147277 379147831 0.000000e+00 887.0
16 TraesCS4B01G221400 chr4D 87.986 283 20 12 7621 7898 379151446 379151719 9.890000e-84 322.0
17 TraesCS4B01G221400 chr4D 94.565 184 9 1 2977 3160 379149261 379149443 4.670000e-72 283.0
18 TraesCS4B01G221400 chr4D 91.579 95 1 2 1391 1481 67233276 67233367 2.990000e-24 124.0
19 TraesCS4B01G221400 chr4A 93.378 1933 72 23 5638 7556 85904278 85902388 0.000000e+00 2809.0
20 TraesCS4B01G221400 chr4A 95.863 1402 51 5 1 1399 85907331 85905934 0.000000e+00 2261.0
21 TraesCS4B01G221400 chr4A 95.174 1409 44 9 1479 2877 85905936 85904542 0.000000e+00 2204.0
22 TraesCS4B01G221400 chr4A 83.622 751 96 12 3164 3901 689358089 689357353 0.000000e+00 680.0
23 TraesCS4B01G221400 chr4A 87.931 290 18 11 7623 7898 85902364 85902078 7.640000e-85 326.0
24 TraesCS4B01G221400 chr4A 85.766 274 14 7 2908 3160 85904538 85904269 4.700000e-67 267.0
25 TraesCS4B01G221400 chr4A 100.000 81 0 0 4034 4114 29159037 29158957 4.940000e-32 150.0
26 TraesCS4B01G221400 chr4A 91.089 101 7 2 2848 2947 712733807 712733708 1.380000e-27 135.0
27 TraesCS4B01G221400 chr7A 88.411 1441 132 7 4177 5603 479839955 479841374 0.000000e+00 1703.0
28 TraesCS4B01G221400 chr7A 100.000 144 0 0 4033 4176 467427152 467427009 4.700000e-67 267.0
29 TraesCS4B01G221400 chr3A 88.069 1450 127 12 4177 5608 19336580 19338001 0.000000e+00 1677.0
30 TraesCS4B01G221400 chr3A 86.753 770 85 6 3268 4033 19335831 19336587 0.000000e+00 841.0
31 TraesCS4B01G221400 chr3A 83.815 865 124 5 3173 4033 47082249 47081397 0.000000e+00 808.0
32 TraesCS4B01G221400 chr3A 83.986 562 79 6 4194 4753 747533066 747533618 5.430000e-146 529.0
33 TraesCS4B01G221400 chr3A 85.455 385 47 2 4176 4560 47081405 47081030 7.430000e-105 392.0
34 TraesCS4B01G221400 chr3A 84.583 240 26 2 3701 3940 45088998 45088770 2.220000e-55 228.0
35 TraesCS4B01G221400 chr3A 86.826 167 1 1 4031 4176 734007034 734007200 4.900000e-37 167.0
36 TraesCS4B01G221400 chr3A 100.000 83 0 0 4032 4114 217823793 217823711 3.820000e-33 154.0
37 TraesCS4B01G221400 chr3A 94.595 74 2 2 4094 4166 217823710 217823638 6.480000e-21 113.0
38 TraesCS4B01G221400 chr2B 87.775 1456 145 9 4177 5617 520227522 520226085 0.000000e+00 1672.0
39 TraesCS4B01G221400 chr2B 86.122 771 89 7 3268 4033 520228272 520227515 0.000000e+00 815.0
40 TraesCS4B01G221400 chr2B 78.182 550 92 24 6032 6562 245009322 245008782 7.640000e-85 326.0
41 TraesCS4B01G221400 chr2B 84.167 240 27 2 3701 3940 209831391 209831163 1.030000e-53 222.0
42 TraesCS4B01G221400 chr7B 87.294 1456 147 9 4177 5615 597247569 597246135 0.000000e+00 1629.0
43 TraesCS4B01G221400 chr7B 85.863 771 90 8 3268 4033 597248318 597247562 0.000000e+00 802.0
44 TraesCS4B01G221400 chr7B 84.583 240 26 2 3701 3940 565967762 565967534 2.220000e-55 228.0
45 TraesCS4B01G221400 chr7B 97.531 81 2 0 4034 4114 355727483 355727403 1.070000e-28 139.0
46 TraesCS4B01G221400 chr7B 90.654 107 6 2 2860 2966 654925769 654925871 1.070000e-28 139.0
47 TraesCS4B01G221400 chr7B 93.243 74 3 2 4094 4166 355727402 355727330 3.010000e-19 108.0
48 TraesCS4B01G221400 chr7B 87.500 80 10 0 2408 2487 618503334 618503255 8.440000e-15 93.5
49 TraesCS4B01G221400 chr7B 86.250 80 11 0 2408 2487 385504433 385504354 3.930000e-13 87.9
50 TraesCS4B01G221400 chr7B 97.619 42 0 1 4139 4180 516468029 516467989 3.950000e-08 71.3
51 TraesCS4B01G221400 chr1B 87.154 1409 147 9 4179 5573 562193448 562194836 0.000000e+00 1568.0
52 TraesCS4B01G221400 chr1B 89.848 660 58 5 4177 4836 17726596 17727246 0.000000e+00 839.0
53 TraesCS4B01G221400 chr1B 86.334 761 86 7 3268 4023 562192700 562193447 0.000000e+00 813.0
54 TraesCS4B01G221400 chr1B 85.979 378 42 2 3656 4033 17726237 17726603 2.070000e-105 394.0
55 TraesCS4B01G221400 chr1B 84.553 246 27 2 3695 3940 539462437 539462671 4.770000e-57 233.0
56 TraesCS4B01G221400 chr1B 89.565 115 6 6 2852 2965 164770457 164770348 2.970000e-29 141.0
57 TraesCS4B01G221400 chr1B 91.579 95 2 2 1397 1491 579792243 579792155 8.320000e-25 126.0
58 TraesCS4B01G221400 chr5A 85.518 1457 165 13 4177 5615 653954645 653953217 0.000000e+00 1480.0
59 TraesCS4B01G221400 chr5A 85.943 875 105 13 3163 4033 653955498 653954638 0.000000e+00 918.0
60 TraesCS4B01G221400 chr5A 100.000 122 0 0 4033 4154 130533126 130533247 7.970000e-55 226.0
61 TraesCS4B01G221400 chr5A 94.318 88 1 3 1394 1481 634490467 634490384 1.790000e-26 132.0
62 TraesCS4B01G221400 chr5B 84.774 1458 154 28 4177 5605 662601736 662600318 0.000000e+00 1400.0
63 TraesCS4B01G221400 chr5B 87.200 875 92 7 3163 4033 662602587 662601729 0.000000e+00 977.0
64 TraesCS4B01G221400 chr5B 90.099 101 0 4 1387 1482 676928095 676928190 1.080000e-23 122.0
65 TraesCS4B01G221400 chr3B 86.521 1187 121 16 4177 5351 580222335 580223494 0.000000e+00 1269.0
66 TraesCS4B01G221400 chr3B 86.177 1143 108 16 4175 5306 395908295 395907192 0.000000e+00 1190.0
67 TraesCS4B01G221400 chr3B 87.557 884 82 20 3162 4033 580221475 580222342 0.000000e+00 998.0
68 TraesCS4B01G221400 chr3B 87.329 876 93 5 3162 4033 395909147 395908286 0.000000e+00 987.0
69 TraesCS4B01G221400 chr3B 86.691 819 88 11 3166 3979 179372955 179372153 0.000000e+00 889.0
70 TraesCS4B01G221400 chr3B 80.070 1144 177 22 4470 5598 826155572 826154465 0.000000e+00 802.0
71 TraesCS4B01G221400 chr3B 84.793 651 83 8 3163 3809 60410546 60409908 2.400000e-179 640.0
72 TraesCS4B01G221400 chr3B 84.259 216 31 1 5391 5603 580223498 580223713 2.890000e-49 207.0
73 TraesCS4B01G221400 chr3B 88.608 158 6 2 4027 4184 236507684 236507829 1.750000e-41 182.0
74 TraesCS4B01G221400 chr3B 87.195 164 0 1 4034 4176 428093300 428093137 4.900000e-37 167.0
75 TraesCS4B01G221400 chr3B 92.553 94 1 2 1398 1488 193961386 193961296 6.430000e-26 130.0
76 TraesCS4B01G221400 chr5D 87.475 998 103 8 4177 5166 526841743 526840760 0.000000e+00 1131.0
77 TraesCS4B01G221400 chr5D 88.346 532 56 3 3162 3689 526842734 526842205 1.120000e-177 634.0
78 TraesCS4B01G221400 chr5D 85.169 472 50 10 5160 5611 526831509 526831038 4.320000e-127 466.0
79 TraesCS4B01G221400 chr5D 90.604 149 4 3 4033 4171 557197320 557197468 1.050000e-43 189.0
80 TraesCS4B01G221400 chr5D 82.381 210 25 4 3732 3940 255591937 255591739 1.050000e-38 172.0
81 TraesCS4B01G221400 chr3D 85.535 878 106 13 3161 4033 36841441 36840580 0.000000e+00 898.0
82 TraesCS4B01G221400 chr3D 81.800 1022 161 12 4561 5573 612775676 612774671 0.000000e+00 833.0
83 TraesCS4B01G221400 chr3D 86.458 384 43 2 4177 4560 36840587 36840213 5.700000e-111 412.0
84 TraesCS4B01G221400 chr2A 77.905 611 99 24 5971 6562 203005107 203004514 1.630000e-91 348.0
85 TraesCS4B01G221400 chr2A 88.889 108 8 4 2837 2943 568412684 568412788 6.430000e-26 130.0
86 TraesCS4B01G221400 chr2A 87.273 110 7 5 2860 2964 759455616 759455509 1.390000e-22 119.0
87 TraesCS4B01G221400 chr2A 86.585 82 11 0 2407 2488 569278807 569278888 3.040000e-14 91.6
88 TraesCS4B01G221400 chr2D 77.500 600 105 20 5967 6550 188884859 188884274 4.570000e-87 333.0
89 TraesCS4B01G221400 chr2D 84.146 246 28 2 3695 3940 188840345 188840579 2.220000e-55 228.0
90 TraesCS4B01G221400 chr2D 87.943 141 14 3 4037 4176 185386245 185386107 6.340000e-36 163.0
91 TraesCS4B01G221400 chr6A 90.260 154 5 1 4034 4177 609256051 609256204 8.090000e-45 193.0
92 TraesCS4B01G221400 chr6A 100.000 81 0 0 4034 4114 111742719 111742639 4.940000e-32 150.0
93 TraesCS4B01G221400 chr6A 90.991 111 7 2 2857 2965 27342892 27343001 6.390000e-31 147.0
94 TraesCS4B01G221400 chr6A 100.000 61 0 0 4094 4154 111742638 111742578 6.480000e-21 113.0
95 TraesCS4B01G221400 chr6A 98.413 63 1 0 4114 4176 82092524 82092462 2.330000e-20 111.0
96 TraesCS4B01G221400 chr7D 90.260 154 4 5 4034 4177 59938594 59938442 2.910000e-44 191.0
97 TraesCS4B01G221400 chr7D 82.938 211 25 5 5090 5289 111399274 111399484 6.300000e-41 180.0
98 TraesCS4B01G221400 chr7D 91.262 103 5 4 2860 2961 49828860 49828761 3.840000e-28 137.0
99 TraesCS4B01G221400 chr7D 88.889 108 8 4 2840 2947 318577501 318577398 6.430000e-26 130.0
100 TraesCS4B01G221400 chr7D 94.253 87 0 2 1398 1482 561332765 561332848 2.310000e-25 128.0
101 TraesCS4B01G221400 chr7D 89.535 86 5 4 2408 2491 410057986 410057903 1.080000e-18 106.0
102 TraesCS4B01G221400 chr1A 96.809 94 1 2 4085 4176 372237703 372237796 1.060000e-33 156.0
103 TraesCS4B01G221400 chr1A 100.000 36 0 0 4034 4069 372237464 372237499 5.110000e-07 67.6
104 TraesCS4B01G221400 chr6B 100.000 83 0 0 4032 4114 289693809 289693891 3.820000e-33 154.0
105 TraesCS4B01G221400 chr6B 100.000 82 0 0 4033 4114 438927450 438927531 1.370000e-32 152.0
106 TraesCS4B01G221400 chr6B 100.000 81 0 0 4034 4114 239363452 239363532 4.940000e-32 150.0
107 TraesCS4B01G221400 chr6B 92.000 100 4 3 2845 2943 96970858 96970762 3.840000e-28 137.0
108 TraesCS4B01G221400 chr6B 82.692 156 3 9 4034 4166 438924935 438924781 5.010000e-22 117.0
109 TraesCS4B01G221400 chr6B 100.000 61 0 0 4094 4154 239363533 239363593 6.480000e-21 113.0
110 TraesCS4B01G221400 chr6B 100.000 61 0 0 4094 4154 289693892 289693952 6.480000e-21 113.0
111 TraesCS4B01G221400 chr6B 100.000 61 0 0 4094 4154 438927532 438927592 6.480000e-21 113.0
112 TraesCS4B01G221400 chrUn 91.176 102 6 3 2850 2950 17148693 17148594 1.380000e-27 135.0
113 TraesCS4B01G221400 chrUn 87.640 89 5 3 2408 2491 83375546 83375633 1.810000e-16 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G221400 chr4B 465730837 465738734 7897 False 14585.000000 14585 100.000000 1 7898 1 chr4B.!!$F1 7897
1 TraesCS4B01G221400 chr4B 649476156 649477572 1416 False 1659.000000 1659 87.944000 4177 5594 1 chr4B.!!$F3 1417
2 TraesCS4B01G221400 chr4D 379146350 379151719 5369 False 1281.666667 2911 93.112833 3 7898 6 chr4D.!!$F2 7895
3 TraesCS4B01G221400 chr4A 85902078 85907331 5253 True 1573.400000 2809 91.622400 1 7898 5 chr4A.!!$R4 7897
4 TraesCS4B01G221400 chr4A 689357353 689358089 736 True 680.000000 680 83.622000 3164 3901 1 chr4A.!!$R2 737
5 TraesCS4B01G221400 chr7A 479839955 479841374 1419 False 1703.000000 1703 88.411000 4177 5603 1 chr7A.!!$F1 1426
6 TraesCS4B01G221400 chr3A 19335831 19338001 2170 False 1259.000000 1677 87.411000 3268 5608 2 chr3A.!!$F3 2340
7 TraesCS4B01G221400 chr3A 47081030 47082249 1219 True 600.000000 808 84.635000 3173 4560 2 chr3A.!!$R2 1387
8 TraesCS4B01G221400 chr3A 747533066 747533618 552 False 529.000000 529 83.986000 4194 4753 1 chr3A.!!$F2 559
9 TraesCS4B01G221400 chr2B 520226085 520228272 2187 True 1243.500000 1672 86.948500 3268 5617 2 chr2B.!!$R3 2349
10 TraesCS4B01G221400 chr2B 245008782 245009322 540 True 326.000000 326 78.182000 6032 6562 1 chr2B.!!$R2 530
11 TraesCS4B01G221400 chr7B 597246135 597248318 2183 True 1215.500000 1629 86.578500 3268 5615 2 chr7B.!!$R6 2347
12 TraesCS4B01G221400 chr1B 562192700 562194836 2136 False 1190.500000 1568 86.744000 3268 5573 2 chr1B.!!$F3 2305
13 TraesCS4B01G221400 chr1B 17726237 17727246 1009 False 616.500000 839 87.913500 3656 4836 2 chr1B.!!$F2 1180
14 TraesCS4B01G221400 chr5A 653953217 653955498 2281 True 1199.000000 1480 85.730500 3163 5615 2 chr5A.!!$R2 2452
15 TraesCS4B01G221400 chr5B 662600318 662602587 2269 True 1188.500000 1400 85.987000 3163 5605 2 chr5B.!!$R1 2442
16 TraesCS4B01G221400 chr3B 395907192 395909147 1955 True 1088.500000 1190 86.753000 3162 5306 2 chr3B.!!$R6 2144
17 TraesCS4B01G221400 chr3B 179372153 179372955 802 True 889.000000 889 86.691000 3166 3979 1 chr3B.!!$R2 813
18 TraesCS4B01G221400 chr3B 580221475 580223713 2238 False 824.666667 1269 86.112333 3162 5603 3 chr3B.!!$F2 2441
19 TraesCS4B01G221400 chr3B 826154465 826155572 1107 True 802.000000 802 80.070000 4470 5598 1 chr3B.!!$R5 1128
20 TraesCS4B01G221400 chr3B 60409908 60410546 638 True 640.000000 640 84.793000 3163 3809 1 chr3B.!!$R1 646
21 TraesCS4B01G221400 chr5D 526840760 526842734 1974 True 882.500000 1131 87.910500 3162 5166 2 chr5D.!!$R3 2004
22 TraesCS4B01G221400 chr3D 612774671 612775676 1005 True 833.000000 833 81.800000 4561 5573 1 chr3D.!!$R1 1012
23 TraesCS4B01G221400 chr3D 36840213 36841441 1228 True 655.000000 898 85.996500 3161 4560 2 chr3D.!!$R2 1399
24 TraesCS4B01G221400 chr2A 203004514 203005107 593 True 348.000000 348 77.905000 5971 6562 1 chr2A.!!$R1 591
25 TraesCS4B01G221400 chr2D 188884274 188884859 585 True 333.000000 333 77.500000 5967 6550 1 chr2D.!!$R2 583

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
329 334 2.038557 GTCCAGTAGCTCCCTTGTTGAA 59.961 50.0 0.0 0.0 0.00 2.69 F
1413 1510 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.0 0.0 0.0 0.00 4.55 F
1415 1512 1.109609 GTACTCCCTCCGTTCCGATT 58.890 55.0 0.0 0.0 0.00 3.34 F
3092 3233 0.038343 CCCCTTTTCATTGTGTGCCG 60.038 55.0 0.0 0.0 0.00 5.69 F
4643 4945 0.035725 CCCAAGCAGTGAGAGCATCA 60.036 55.0 0.0 0.0 37.82 3.07 F
5129 5443 0.036388 GGAACCTCGCATGAGACCAA 60.036 55.0 0.0 0.0 45.57 3.67 F
5622 5989 0.099436 GCCGCATCGCTTCTGATTTT 59.901 50.0 0.0 0.0 0.00 1.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1445 1542 0.037975 ATTTACTCGTCGCCGTGGTT 60.038 50.000 0.00 0.0 35.01 3.67 R
2473 2589 0.668535 GCACACCCTCTGTTCCAAAC 59.331 55.000 0.00 0.0 0.00 2.93 R
3273 3423 0.885879 ATGCCGTGTGAGTAGTTCGA 59.114 50.000 0.00 0.0 0.00 3.71 R
5063 5377 0.243907 CAATCTGGTCCTCACGACGT 59.756 55.000 0.00 0.0 42.99 4.34 R
5622 5989 0.753867 TGAACTTACAGGCCACGTCA 59.246 50.000 5.01 0.0 0.00 4.35 R
6562 6964 2.423577 AGGAGCCATTACACGACAAAC 58.576 47.619 0.00 0.0 0.00 2.93 R
7156 7561 0.178767 TCCGGTGATCAGGCATGAAG 59.821 55.000 4.62 0.0 39.39 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
78 79 3.119637 ACTTTGTCCAACGAGGTTTTGTG 60.120 43.478 0.00 0.00 39.02 3.33
84 85 2.223479 CCAACGAGGTTTTGTGAACTGG 60.223 50.000 0.00 0.00 0.00 4.00
88 89 2.226437 CGAGGTTTTGTGAACTGGGATG 59.774 50.000 0.00 0.00 0.00 3.51
94 95 4.879295 TTTGTGAACTGGGATGGGATAT 57.121 40.909 0.00 0.00 0.00 1.63
102 103 6.159575 TGAACTGGGATGGGATATTACAAGAA 59.840 38.462 0.00 0.00 0.00 2.52
107 108 7.647827 TGGGATGGGATATTACAAGAAAAGAA 58.352 34.615 0.00 0.00 0.00 2.52
112 113 9.927081 ATGGGATATTACAAGAAAAGAACATCT 57.073 29.630 0.00 0.00 0.00 2.90
169 170 6.331061 AGGCTACAACTTATACTGTTTCTCG 58.669 40.000 0.00 0.00 0.00 4.04
192 193 6.041637 TCGGCATTATCTACTATTGGTTCTGT 59.958 38.462 0.00 0.00 0.00 3.41
230 231 7.156673 TGTTACCGAAATATACCAGATTAGCC 58.843 38.462 0.00 0.00 0.00 3.93
317 322 2.611225 AAGCATAGCTGTCCAGTAGC 57.389 50.000 0.00 0.00 39.62 3.58
329 334 2.038557 GTCCAGTAGCTCCCTTGTTGAA 59.961 50.000 0.00 0.00 0.00 2.69
449 454 4.445305 CCCAGAAATATCATCAGCCAGTGA 60.445 45.833 0.00 0.00 40.38 3.41
535 540 4.020218 TGTGCCCTGCTATTATATCCACTC 60.020 45.833 0.00 0.00 0.00 3.51
749 760 4.084287 TCTTTGAGAGCATTCTGCCATTT 58.916 39.130 0.00 0.00 46.52 2.32
886 982 3.057019 TCTTTGTTGTCGAATCTGGACG 58.943 45.455 0.00 0.00 37.22 4.79
1212 1308 5.992217 TCCTGCTTGTTTTAGTCTTCTCTTC 59.008 40.000 0.00 0.00 0.00 2.87
1408 1505 7.613551 AGATTAAATTATGTACTCCCTCCGT 57.386 36.000 0.00 0.00 0.00 4.69
1409 1506 8.030913 AGATTAAATTATGTACTCCCTCCGTT 57.969 34.615 0.00 0.00 0.00 4.44
1410 1507 8.148999 AGATTAAATTATGTACTCCCTCCGTTC 58.851 37.037 0.00 0.00 0.00 3.95
1411 1508 4.684484 AATTATGTACTCCCTCCGTTCC 57.316 45.455 0.00 0.00 0.00 3.62
1412 1509 1.683943 TATGTACTCCCTCCGTTCCG 58.316 55.000 0.00 0.00 0.00 4.30
1413 1510 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
1414 1511 0.033796 TGTACTCCCTCCGTTCCGAT 60.034 55.000 0.00 0.00 0.00 4.18
1415 1512 1.109609 GTACTCCCTCCGTTCCGATT 58.890 55.000 0.00 0.00 0.00 3.34
1416 1513 1.479730 GTACTCCCTCCGTTCCGATTT 59.520 52.381 0.00 0.00 0.00 2.17
1417 1514 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
1418 1515 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
1419 1516 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
1420 1517 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
1422 1519 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
1423 1520 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
1424 1521 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
1425 1522 1.466360 CCGTTCCGATTTACTCGTCGT 60.466 52.381 0.00 0.00 46.18 4.34
1426 1523 1.576246 CGTTCCGATTTACTCGTCGTG 59.424 52.381 0.00 0.00 46.18 4.35
1427 1524 1.916000 GTTCCGATTTACTCGTCGTGG 59.084 52.381 0.00 0.00 46.18 4.94
1428 1525 1.167851 TCCGATTTACTCGTCGTGGT 58.832 50.000 0.00 0.00 46.18 4.16
1429 1526 1.541147 TCCGATTTACTCGTCGTGGTT 59.459 47.619 0.00 0.00 46.18 3.67
1430 1527 2.030007 TCCGATTTACTCGTCGTGGTTT 60.030 45.455 0.00 0.00 46.18 3.27
1431 1528 2.733026 CCGATTTACTCGTCGTGGTTTT 59.267 45.455 0.00 0.00 46.18 2.43
1432 1529 3.919804 CCGATTTACTCGTCGTGGTTTTA 59.080 43.478 0.00 0.00 46.18 1.52
1433 1530 4.030977 CCGATTTACTCGTCGTGGTTTTAG 59.969 45.833 0.00 0.00 46.18 1.85
1434 1531 4.618489 CGATTTACTCGTCGTGGTTTTAGT 59.382 41.667 0.00 0.00 42.56 2.24
1435 1532 5.117592 CGATTTACTCGTCGTGGTTTTAGTT 59.882 40.000 0.00 0.00 42.56 2.24
1436 1533 6.346040 CGATTTACTCGTCGTGGTTTTAGTTT 60.346 38.462 0.00 0.00 42.56 2.66
1437 1534 6.660887 TTTACTCGTCGTGGTTTTAGTTTT 57.339 33.333 0.00 0.00 0.00 2.43
1438 1535 4.525411 ACTCGTCGTGGTTTTAGTTTTG 57.475 40.909 0.00 0.00 0.00 2.44
1439 1536 4.183101 ACTCGTCGTGGTTTTAGTTTTGA 58.817 39.130 0.00 0.00 0.00 2.69
1440 1537 4.630940 ACTCGTCGTGGTTTTAGTTTTGAA 59.369 37.500 0.00 0.00 0.00 2.69
1441 1538 4.896080 TCGTCGTGGTTTTAGTTTTGAAC 58.104 39.130 0.00 0.00 0.00 3.18
1442 1539 4.630940 TCGTCGTGGTTTTAGTTTTGAACT 59.369 37.500 0.00 0.00 45.40 3.01
1443 1540 5.809562 TCGTCGTGGTTTTAGTTTTGAACTA 59.190 36.000 0.00 0.00 42.81 2.24
1454 1551 2.759538 TTTGAACTAAAACCACGGCG 57.240 45.000 4.80 4.80 0.00 6.46
1455 1552 1.950828 TTGAACTAAAACCACGGCGA 58.049 45.000 16.62 0.00 0.00 5.54
1456 1553 1.219646 TGAACTAAAACCACGGCGAC 58.780 50.000 16.62 0.00 0.00 5.19
1457 1554 6.760898 TTTTGAACTAAAACCACGGCGACG 62.761 45.833 16.62 10.39 45.82 5.12
1605 1702 8.458573 TGTACCATTTTAAATGCTATCGGAAT 57.541 30.769 11.82 0.00 0.00 3.01
1693 1791 7.120432 GTGCTTCTTTGGTCTTGAATCTAGATT 59.880 37.037 17.96 17.96 0.00 2.40
1757 1855 1.144298 CCCAGATTCCATGGCTGATGA 59.856 52.381 16.86 0.00 36.43 2.92
1785 1883 9.684702 AAGGTAGGAATTAATGGTCTAATAGGA 57.315 33.333 0.00 0.00 0.00 2.94
1791 1889 8.847196 GGAATTAATGGTCTAATAGGACAAACC 58.153 37.037 0.00 0.00 37.91 3.27
2061 2176 7.347508 GCCAATGCTGAATCATATTTCATTC 57.652 36.000 0.00 0.00 35.20 2.67
2125 2240 5.710099 AGAAAAAGGACTTGTCAACTGTTGA 59.290 36.000 18.69 18.69 37.33 3.18
2135 2250 4.792068 TGTCAACTGTTGAAGATCCCTTT 58.208 39.130 23.55 0.00 42.15 3.11
2216 2331 1.820519 AGTGTTGTAATACTCGCGGGA 59.179 47.619 15.95 0.92 0.00 5.14
2428 2544 6.403878 TGTTACTACCTCTGTTCCTAAATGC 58.596 40.000 0.00 0.00 0.00 3.56
2473 2589 8.761575 AATTGAACTGCCAAAATGTATTACAG 57.238 30.769 2.53 0.00 0.00 2.74
2491 2607 1.949525 CAGTTTGGAACAGAGGGTGTG 59.050 52.381 0.00 0.00 42.39 3.82
2588 2704 4.225942 TCCTCTCCAGTGTTAAGCATCATT 59.774 41.667 0.00 0.00 0.00 2.57
2667 2786 3.028850 CCATTTCACTGATGATTGGGCT 58.971 45.455 0.00 0.00 35.93 5.19
2877 2998 3.339713 AATACTCCCTCCGTCCCATAA 57.660 47.619 0.00 0.00 0.00 1.90
2878 2999 3.562108 ATACTCCCTCCGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
2879 3000 1.424638 ACTCCCTCCGTCCCATAATG 58.575 55.000 0.00 0.00 0.00 1.90
2880 3001 1.344087 ACTCCCTCCGTCCCATAATGT 60.344 52.381 0.00 0.00 0.00 2.71
2881 3002 2.090943 ACTCCCTCCGTCCCATAATGTA 60.091 50.000 0.00 0.00 0.00 2.29
2882 3003 2.969950 CTCCCTCCGTCCCATAATGTAA 59.030 50.000 0.00 0.00 0.00 2.41
2883 3004 2.969950 TCCCTCCGTCCCATAATGTAAG 59.030 50.000 0.00 0.00 0.00 2.34
2884 3005 2.969950 CCCTCCGTCCCATAATGTAAGA 59.030 50.000 0.00 0.00 0.00 2.10
2885 3006 3.244112 CCCTCCGTCCCATAATGTAAGAC 60.244 52.174 0.00 0.00 0.00 3.01
2887 3008 3.025978 TCCGTCCCATAATGTAAGACGT 58.974 45.455 9.63 0.00 46.62 4.34
2888 3009 3.448301 TCCGTCCCATAATGTAAGACGTT 59.552 43.478 9.63 0.00 46.62 3.99
2889 3010 4.081531 TCCGTCCCATAATGTAAGACGTTT 60.082 41.667 9.63 0.00 46.62 3.60
2890 3011 4.632688 CCGTCCCATAATGTAAGACGTTTT 59.367 41.667 9.63 0.00 46.62 2.43
2891 3012 5.122711 CCGTCCCATAATGTAAGACGTTTTT 59.877 40.000 9.63 0.00 46.62 1.94
2943 3064 1.615384 GCATTATGGGATGGAGGGAGC 60.615 57.143 0.00 0.00 0.00 4.70
2948 3069 0.044092 TGGGATGGAGGGAGCACTTA 59.956 55.000 0.00 0.00 0.00 2.24
2979 3100 4.090761 TCTGAACTGCAGGAATTCACTT 57.909 40.909 19.93 0.00 44.98 3.16
2980 3101 4.067896 TCTGAACTGCAGGAATTCACTTC 58.932 43.478 19.93 10.34 44.98 3.01
3004 3144 5.504755 CGTTAGCGAAAAAGTCTGCTAATTG 59.495 40.000 8.54 2.30 43.54 2.32
3092 3233 0.038343 CCCCTTTTCATTGTGTGCCG 60.038 55.000 0.00 0.00 0.00 5.69
3149 3290 5.463286 CAACTTGCAGAAAATCATGCTGTA 58.537 37.500 0.00 0.00 42.98 2.74
3150 3291 5.306532 ACTTGCAGAAAATCATGCTGTAG 57.693 39.130 0.00 0.00 42.98 2.74
3151 3292 4.763793 ACTTGCAGAAAATCATGCTGTAGT 59.236 37.500 0.00 0.00 42.98 2.73
3152 3293 5.242393 ACTTGCAGAAAATCATGCTGTAGTT 59.758 36.000 0.00 0.00 42.98 2.24
3153 3294 5.300969 TGCAGAAAATCATGCTGTAGTTC 57.699 39.130 0.00 0.00 42.98 3.01
3154 3295 4.761227 TGCAGAAAATCATGCTGTAGTTCA 59.239 37.500 0.00 0.00 42.98 3.18
3155 3296 5.416639 TGCAGAAAATCATGCTGTAGTTCAT 59.583 36.000 0.00 0.00 42.98 2.57
3156 3297 6.071784 TGCAGAAAATCATGCTGTAGTTCATT 60.072 34.615 0.00 0.00 42.98 2.57
3157 3298 7.121020 TGCAGAAAATCATGCTGTAGTTCATTA 59.879 33.333 0.00 0.00 42.98 1.90
3158 3299 7.642978 GCAGAAAATCATGCTGTAGTTCATTAG 59.357 37.037 0.00 0.00 39.38 1.73
3159 3300 8.671921 CAGAAAATCATGCTGTAGTTCATTAGT 58.328 33.333 0.00 0.00 0.00 2.24
3273 3423 2.158726 ACCAATACAAACGGACCACAGT 60.159 45.455 0.00 0.00 0.00 3.55
3404 3554 1.614903 CCAATCAAGCAGGCAAAGACA 59.385 47.619 0.00 0.00 0.00 3.41
3433 3584 2.564721 GGCGCCACTCTTGCCTTTT 61.565 57.895 24.80 0.00 45.40 2.27
3514 3666 1.202879 CCAAACCAGGTCTAGCAACCA 60.203 52.381 0.00 0.00 42.12 3.67
3573 3725 4.162651 AGAGAGCATTTGAATTTGGGGTT 58.837 39.130 0.00 0.00 0.00 4.11
3605 3757 0.330604 AGTGGCTGAATGGTCATGCT 59.669 50.000 0.00 0.00 31.85 3.79
3607 3759 1.945394 GTGGCTGAATGGTCATGCTAG 59.055 52.381 0.00 0.00 31.85 3.42
3635 3790 1.153489 CCTGCTCGATGGTCACAGG 60.153 63.158 0.00 0.00 41.78 4.00
3647 3802 1.918293 TCACAGGCGAGGGAATGGT 60.918 57.895 0.00 0.00 0.00 3.55
3654 3809 1.889105 CGAGGGAATGGTGGCATCG 60.889 63.158 0.00 0.00 0.00 3.84
3695 3850 1.335496 GATGTCGAGAGGTAGGCTGTC 59.665 57.143 0.00 0.00 0.00 3.51
3720 3876 4.796231 CGACGAAGCTCCACGGGG 62.796 72.222 0.00 0.00 0.00 5.73
3753 3909 4.320844 AGGTCCACCTGTGAAGCT 57.679 55.556 0.00 0.00 46.55 3.74
3782 3940 0.473755 TCCAACTTGAGCTGCTCCAA 59.526 50.000 25.61 17.77 0.00 3.53
3791 4082 0.179045 AGCTGCTCCAACGACAAAGT 60.179 50.000 0.00 0.00 0.00 2.66
3804 4095 4.007659 ACGACAAAGTTGAAACAGGTTCT 58.992 39.130 0.00 0.00 37.13 3.01
3805 4096 4.094442 ACGACAAAGTTGAAACAGGTTCTC 59.906 41.667 0.00 0.00 37.13 2.87
3806 4097 4.495844 CGACAAAGTTGAAACAGGTTCTCC 60.496 45.833 0.00 0.00 37.13 3.71
3807 4098 4.340617 ACAAAGTTGAAACAGGTTCTCCA 58.659 39.130 0.00 0.00 37.13 3.86
3808 4099 4.157840 ACAAAGTTGAAACAGGTTCTCCAC 59.842 41.667 0.00 0.00 37.13 4.02
3989 4284 1.556911 AGATCCACATCTTTGTCGCCT 59.443 47.619 0.00 0.00 35.67 5.52
3992 4287 0.804989 CCACATCTTTGTCGCCTTCC 59.195 55.000 0.00 0.00 32.34 3.46
4006 4301 2.159310 CGCCTTCCAAGTCAACAACAAA 60.159 45.455 0.00 0.00 0.00 2.83
4023 4318 0.890683 AAATTTTGGCAGAGGAGGCG 59.109 50.000 0.00 0.00 36.77 5.52
4024 4319 0.038166 AATTTTGGCAGAGGAGGCGA 59.962 50.000 0.00 0.00 36.77 5.54
4025 4320 0.678048 ATTTTGGCAGAGGAGGCGAC 60.678 55.000 0.00 0.00 36.77 5.19
4026 4321 2.050836 TTTTGGCAGAGGAGGCGACA 62.051 55.000 0.00 0.00 36.77 4.35
4027 4322 1.841302 TTTGGCAGAGGAGGCGACAT 61.841 55.000 0.00 0.00 36.77 3.06
4028 4323 0.975556 TTGGCAGAGGAGGCGACATA 60.976 55.000 0.00 0.00 36.77 2.29
4029 4324 1.365633 GGCAGAGGAGGCGACATAG 59.634 63.158 0.00 0.00 0.00 2.23
4030 4325 1.365633 GCAGAGGAGGCGACATAGG 59.634 63.158 0.00 0.00 0.00 2.57
4031 4326 1.109920 GCAGAGGAGGCGACATAGGA 61.110 60.000 0.00 0.00 0.00 2.94
4032 4327 0.958091 CAGAGGAGGCGACATAGGAG 59.042 60.000 0.00 0.00 0.00 3.69
4033 4328 0.825840 AGAGGAGGCGACATAGGAGC 60.826 60.000 0.00 0.00 0.00 4.70
4034 4329 0.825840 GAGGAGGCGACATAGGAGCT 60.826 60.000 0.00 0.00 0.00 4.09
4035 4330 0.478942 AGGAGGCGACATAGGAGCTA 59.521 55.000 0.00 0.00 0.00 3.32
4036 4331 1.076350 AGGAGGCGACATAGGAGCTAT 59.924 52.381 0.00 0.00 0.00 2.97
4037 4332 1.203523 GGAGGCGACATAGGAGCTATG 59.796 57.143 0.00 0.00 46.43 2.23
4048 4343 5.990408 CATAGGAGCTATGTTTTTAAGGCG 58.010 41.667 0.00 0.00 39.01 5.52
4049 4344 4.216411 AGGAGCTATGTTTTTAAGGCGA 57.784 40.909 0.00 0.00 0.00 5.54
4050 4345 3.939592 AGGAGCTATGTTTTTAAGGCGAC 59.060 43.478 0.00 0.00 0.00 5.19
4051 4346 3.242316 GGAGCTATGTTTTTAAGGCGACG 60.242 47.826 0.00 0.00 0.00 5.12
4052 4347 2.095372 AGCTATGTTTTTAAGGCGACGC 59.905 45.455 12.43 12.43 0.00 5.19
4062 4357 3.259930 GGCGACGCCTTGCTTTAA 58.740 55.556 31.30 0.00 46.69 1.52
4063 4358 1.134694 GGCGACGCCTTGCTTTAAG 59.865 57.895 31.30 0.00 46.69 1.85
4071 4366 1.508088 CTTGCTTTAAGGCGCTGGG 59.492 57.895 7.64 0.00 32.56 4.45
4072 4367 1.937546 CTTGCTTTAAGGCGCTGGGG 61.938 60.000 7.64 0.00 32.56 4.96
4073 4368 3.140814 GCTTTAAGGCGCTGGGGG 61.141 66.667 7.64 0.00 0.00 5.40
4164 4459 4.125695 GTCGCCTTACGGACGCCT 62.126 66.667 0.00 0.00 43.89 5.52
4165 4460 3.376078 TCGCCTTACGGACGCCTT 61.376 61.111 0.00 0.00 43.89 4.35
4166 4461 2.433664 CGCCTTACGGACGCCTTT 60.434 61.111 0.00 0.00 38.44 3.11
4167 4462 1.153784 CGCCTTACGGACGCCTTTA 60.154 57.895 0.00 0.00 38.44 1.85
4168 4463 0.737019 CGCCTTACGGACGCCTTTAA 60.737 55.000 0.00 0.00 38.44 1.52
4169 4464 1.441738 GCCTTACGGACGCCTTTAAA 58.558 50.000 0.00 0.00 0.00 1.52
4170 4465 1.805943 GCCTTACGGACGCCTTTAAAA 59.194 47.619 0.00 0.00 0.00 1.52
4171 4466 2.413239 GCCTTACGGACGCCTTTAAAAC 60.413 50.000 0.00 0.00 0.00 2.43
4172 4467 2.807392 CCTTACGGACGCCTTTAAAACA 59.193 45.455 0.00 0.00 0.00 2.83
4173 4468 3.437741 CCTTACGGACGCCTTTAAAACAT 59.562 43.478 0.00 0.00 0.00 2.71
4286 4582 2.223876 GCCATCCGTGCATTGAATCAAT 60.224 45.455 2.07 2.07 34.04 2.57
4298 4594 6.096282 TGCATTGAATCAATCACATCACTCAT 59.904 34.615 5.36 0.00 37.92 2.90
4299 4595 6.417930 GCATTGAATCAATCACATCACTCATG 59.582 38.462 5.36 0.00 37.92 3.07
4334 4630 4.574674 TCACCATCTGTAAAGAAGCCAT 57.425 40.909 0.00 0.00 0.00 4.40
4391 4687 2.216046 CAGCAAAGACAGACTGAAGCA 58.784 47.619 10.08 0.00 31.67 3.91
4435 4731 3.620488 ACCAGCAGAAGAAGAAACAACA 58.380 40.909 0.00 0.00 0.00 3.33
4448 4744 2.046892 CAACAGACGCCCAGGAGG 60.047 66.667 0.00 0.00 39.47 4.30
4460 4756 2.284995 AGGAGGCCAGGAGTCACC 60.285 66.667 5.01 0.00 39.35 4.02
4643 4945 0.035725 CCCAAGCAGTGAGAGCATCA 60.036 55.000 0.00 0.00 37.82 3.07
4650 4952 2.089980 CAGTGAGAGCATCAAAAGGGG 58.910 52.381 0.00 0.00 40.43 4.79
4653 4955 1.339055 TGAGAGCATCAAAAGGGGTCG 60.339 52.381 0.00 0.00 37.82 4.79
4715 5017 2.058001 ATCGACCATGGAGCCACGA 61.058 57.895 21.47 19.25 0.00 4.35
4732 5034 4.760220 AAGGGATGGGCCGAGGGT 62.760 66.667 0.00 0.00 37.63 4.34
4764 5066 3.399181 GGGGACACCAGGCGATGA 61.399 66.667 0.00 0.00 39.85 2.92
4823 5125 2.714991 TAGCTGCCTCACGCTCAGG 61.715 63.158 0.00 0.00 37.68 3.86
4855 5157 1.601759 GAGCACTTGGAAGCCAGCA 60.602 57.895 0.00 0.00 33.81 4.41
4901 5205 4.083961 GCCATCTTCATCATCTTCGTCATG 60.084 45.833 0.00 0.00 0.00 3.07
4934 5242 2.125512 GCTCCACGAAGACCGCAT 60.126 61.111 0.00 0.00 43.32 4.73
4956 5264 0.739462 TGTCCGTAGCCAAAGCATCG 60.739 55.000 0.00 0.00 43.56 3.84
4965 5273 0.962356 CCAAAGCATCGGAAGCACCT 60.962 55.000 8.03 0.00 36.31 4.00
5029 5343 2.094659 GTGACATGACCGCCGTCTG 61.095 63.158 0.00 5.25 39.94 3.51
5051 5365 1.815003 CAGCAATGACGGGCGATGA 60.815 57.895 0.00 0.00 34.54 2.92
5060 5374 2.109181 GGGCGATGAGGTAGGTGC 59.891 66.667 0.00 0.00 0.00 5.01
5063 5377 1.676678 GGCGATGAGGTAGGTGCTGA 61.677 60.000 0.00 0.00 0.00 4.26
5129 5443 0.036388 GGAACCTCGCATGAGACCAA 60.036 55.000 0.00 0.00 45.57 3.67
5131 5446 2.158957 GGAACCTCGCATGAGACCAATA 60.159 50.000 0.00 0.00 45.57 1.90
5377 5722 1.749638 AGAGCGAACGGAGGTCGAT 60.750 57.895 11.93 4.54 42.43 3.59
5383 5728 2.552585 GAACGGAGGTCGATGCGGAA 62.553 60.000 4.95 0.00 42.43 4.30
5517 5880 4.031129 CAGCAGAGCAGGGGCACT 62.031 66.667 0.00 0.00 44.61 4.40
5619 5986 2.963854 CGCCGCATCGCTTCTGAT 60.964 61.111 0.00 0.00 0.00 2.90
5620 5987 2.528743 CGCCGCATCGCTTCTGATT 61.529 57.895 0.00 0.00 0.00 2.57
5621 5988 1.723870 GCCGCATCGCTTCTGATTT 59.276 52.632 0.00 0.00 0.00 2.17
5622 5989 0.099436 GCCGCATCGCTTCTGATTTT 59.901 50.000 0.00 0.00 0.00 1.82
5623 5990 1.818850 CCGCATCGCTTCTGATTTTG 58.181 50.000 0.00 0.00 0.00 2.44
5624 5991 1.398041 CCGCATCGCTTCTGATTTTGA 59.602 47.619 0.00 0.00 0.00 2.69
5625 5992 2.434761 CGCATCGCTTCTGATTTTGAC 58.565 47.619 0.00 0.00 0.00 3.18
5626 5993 2.434761 GCATCGCTTCTGATTTTGACG 58.565 47.619 0.00 0.00 0.00 4.35
5627 5994 2.159653 GCATCGCTTCTGATTTTGACGT 60.160 45.455 0.00 0.00 0.00 4.34
5628 5995 3.410850 CATCGCTTCTGATTTTGACGTG 58.589 45.455 0.00 0.00 0.00 4.49
5629 5996 1.798223 TCGCTTCTGATTTTGACGTGG 59.202 47.619 0.00 0.00 0.00 4.94
5630 5997 1.725931 CGCTTCTGATTTTGACGTGGC 60.726 52.381 0.00 0.00 0.00 5.01
5631 5998 1.401539 GCTTCTGATTTTGACGTGGCC 60.402 52.381 0.00 0.00 0.00 5.36
5632 5999 2.154462 CTTCTGATTTTGACGTGGCCT 58.846 47.619 3.32 0.00 0.00 5.19
5633 6000 1.522668 TCTGATTTTGACGTGGCCTG 58.477 50.000 3.32 0.00 0.00 4.85
5634 6001 1.202758 TCTGATTTTGACGTGGCCTGT 60.203 47.619 3.32 1.70 0.00 4.00
5635 6002 2.037902 TCTGATTTTGACGTGGCCTGTA 59.962 45.455 3.32 0.00 0.00 2.74
5636 6003 2.811431 CTGATTTTGACGTGGCCTGTAA 59.189 45.455 3.32 0.00 0.00 2.41
5794 6163 6.378661 TGCTCATTATAGCCTGGATGTTAT 57.621 37.500 0.00 0.00 42.05 1.89
5823 6192 4.642437 TGTTTAGCATGTTGTCAGTTTCCA 59.358 37.500 0.00 0.00 0.00 3.53
5875 6244 7.621832 TTTACTGAATTTCTTTTGTGCATCG 57.378 32.000 0.00 0.00 0.00 3.84
5911 6280 4.828939 TGTCAGTTTGAATGCCTCAATCTT 59.171 37.500 6.52 0.00 43.64 2.40
6046 6415 2.350388 GCGTGTTGTTGTTACCATCCTG 60.350 50.000 0.00 0.00 0.00 3.86
6150 6520 5.401531 TCCTGACATAGTGTGGTAGTTTC 57.598 43.478 0.00 0.00 0.00 2.78
6155 6528 5.185249 TGACATAGTGTGGTAGTTTCCTCTC 59.815 44.000 0.00 0.00 0.00 3.20
6440 6826 6.351881 GGCTGCAATATATAGTGGGCTACTTA 60.352 42.308 9.37 2.27 40.89 2.24
6477 6877 2.479566 AGCGGTATATGGCAATGAGG 57.520 50.000 0.00 0.00 0.00 3.86
6528 6930 2.285220 GCGAATGATAACACAGCGACAT 59.715 45.455 0.00 0.00 0.00 3.06
6529 6931 3.842439 GCGAATGATAACACAGCGACATG 60.842 47.826 0.00 0.00 0.00 3.21
6580 6982 3.889196 TTGTTTGTCGTGTAATGGCTC 57.111 42.857 0.00 0.00 0.00 4.70
6606 7008 8.819974 CCTTGCAAGTTTTATATATGCCTTTTG 58.180 33.333 24.35 0.00 36.20 2.44
6607 7009 9.369904 CTTGCAAGTTTTATATATGCCTTTTGT 57.630 29.630 18.65 0.00 36.20 2.83
6631 7033 3.920231 TCAGATGATGCTTTGCTACCT 57.080 42.857 0.00 0.00 0.00 3.08
6652 7054 4.265073 CTTGGAAAGGAACACTAGGATGG 58.735 47.826 0.00 0.00 41.27 3.51
6717 7119 6.976934 ACTTGGTTATTGGTCACTTGAATT 57.023 33.333 0.00 0.00 0.00 2.17
6723 7125 6.808212 GGTTATTGGTCACTTGAATTGACATG 59.192 38.462 15.96 0.00 44.47 3.21
6744 7146 6.379133 ACATGCATGTCTTATTTCAGGTCAAT 59.621 34.615 26.61 0.00 35.87 2.57
6956 7359 0.178926 TGGGTCGAGGAACTGGGTAA 60.179 55.000 0.00 0.00 41.55 2.85
6969 7372 1.055551 TGGGTAACAGGACGTGGGTT 61.056 55.000 0.00 0.00 39.74 4.11
7016 7419 2.287977 AACCTCTTTGGGTTAGGTGC 57.712 50.000 0.00 0.00 46.46 5.01
7021 7426 1.141254 TCTTTGGGTTAGGTGCGACAA 59.859 47.619 0.00 0.00 0.00 3.18
7022 7427 1.950909 CTTTGGGTTAGGTGCGACAAA 59.049 47.619 0.00 0.00 0.00 2.83
7104 7509 9.338622 CCGGGTCTCTTCTATACATTTTTATTT 57.661 33.333 0.00 0.00 0.00 1.40
7156 7561 4.692228 TGATTTGTCTTTGTTGAAAGCCC 58.308 39.130 0.00 0.00 38.83 5.19
7172 7577 1.105759 GCCCTTCATGCCTGATCACC 61.106 60.000 0.00 0.00 0.00 4.02
7176 7581 0.839277 TTCATGCCTGATCACCGGAT 59.161 50.000 9.46 0.00 36.13 4.18
7211 7616 1.045407 TTCCTTGCGTGTACTCACCT 58.955 50.000 0.00 0.00 41.09 4.00
7214 7619 1.066858 CCTTGCGTGTACTCACCTGAT 60.067 52.381 0.00 0.00 41.09 2.90
7296 7705 6.932356 TGTCCAATGCTCTTTCTATGATTC 57.068 37.500 0.00 0.00 0.00 2.52
7372 7781 8.606830 ACCCTAATTGTATGGATAGATTCTTCC 58.393 37.037 0.00 0.08 0.00 3.46
7401 7810 7.489160 ACTAATCTAGAACATGTCATTGCGTA 58.511 34.615 0.00 0.00 0.00 4.42
7415 7825 3.358111 TTGCGTATTCTTTGGGGATGA 57.642 42.857 0.00 0.00 0.00 2.92
7417 7827 2.026729 TGCGTATTCTTTGGGGATGACA 60.027 45.455 0.00 0.00 0.00 3.58
7422 7832 1.851304 TCTTTGGGGATGACAATGGC 58.149 50.000 0.00 0.00 0.00 4.40
7548 7958 3.550842 GGTGATTGTTCTCTGTTTGTGGC 60.551 47.826 0.00 0.00 0.00 5.01
7573 7990 3.875727 CTGATCTTGTTCAAGCGATCCAT 59.124 43.478 7.58 0.00 33.15 3.41
7581 7998 0.029035 CAAGCGATCCATGCAAGCTC 59.971 55.000 0.00 0.00 37.15 4.09
7605 8022 4.569564 GCTCCCTACTGGTTTTATGTTACG 59.430 45.833 0.00 0.00 34.77 3.18
7609 8026 4.632688 CCTACTGGTTTTATGTTACGGTGG 59.367 45.833 0.00 0.00 0.00 4.61
7610 8027 4.354893 ACTGGTTTTATGTTACGGTGGA 57.645 40.909 0.00 0.00 0.00 4.02
7612 8029 3.075884 TGGTTTTATGTTACGGTGGAGC 58.924 45.455 0.00 0.00 0.00 4.70
7613 8030 3.075884 GGTTTTATGTTACGGTGGAGCA 58.924 45.455 0.00 0.00 0.00 4.26
7614 8031 3.502979 GGTTTTATGTTACGGTGGAGCAA 59.497 43.478 0.00 0.00 0.00 3.91
7615 8032 4.023021 GGTTTTATGTTACGGTGGAGCAAA 60.023 41.667 0.00 0.00 0.00 3.68
7616 8033 5.151389 GTTTTATGTTACGGTGGAGCAAAG 58.849 41.667 0.00 0.00 0.00 2.77
7617 8034 1.821216 ATGTTACGGTGGAGCAAAGG 58.179 50.000 0.00 0.00 0.00 3.11
7618 8035 0.250553 TGTTACGGTGGAGCAAAGGG 60.251 55.000 0.00 0.00 0.00 3.95
7637 8101 9.120538 GCAAAGGGAAATCTATAGTTTGACATA 57.879 33.333 11.75 0.00 0.00 2.29
7681 8146 5.538053 TGCTGGGTTTGAATTCATCACTTTA 59.462 36.000 9.40 0.00 37.92 1.85
7698 8164 3.549433 TACCCCTCCCACGCCTTCA 62.549 63.158 0.00 0.00 0.00 3.02
7701 8167 2.124570 CCTCCCACGCCTTCATGG 60.125 66.667 0.00 0.00 39.35 3.66
7735 8201 3.188786 CTGCTACGGCCGTTGAGC 61.189 66.667 35.43 35.43 37.74 4.26
7737 8203 4.789075 GCTACGGCCGTTGAGCGA 62.789 66.667 37.87 19.21 44.77 4.93
7738 8204 2.104331 CTACGGCCGTTGAGCGAT 59.896 61.111 38.94 11.55 44.77 4.58
7739 8205 2.202690 TACGGCCGTTGAGCGATG 60.203 61.111 38.94 0.00 44.77 3.84
7745 8221 1.809869 CCGTTGAGCGATGAGGAGA 59.190 57.895 0.00 0.00 44.77 3.71
7753 8229 2.196925 CGATGAGGAGACGAGGGGG 61.197 68.421 0.00 0.00 0.00 5.40
7774 8250 4.101119 GGGGCAACACTGTCATACTAGTAT 59.899 45.833 9.71 9.71 36.63 2.12
7775 8251 5.303589 GGGGCAACACTGTCATACTAGTATA 59.696 44.000 15.03 0.00 36.63 1.47
7776 8252 6.014499 GGGGCAACACTGTCATACTAGTATAT 60.014 42.308 15.03 0.00 36.63 0.86
7819 8295 1.144503 GTGATGGATCAGGGGAGCAAT 59.855 52.381 0.00 0.00 37.51 3.56
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 0.890683 CTGGATGGCCCTTTCACAAC 59.109 55.000 0.00 0.00 35.38 3.32
78 79 6.187727 TCTTGTAATATCCCATCCCAGTTC 57.812 41.667 0.00 0.00 0.00 3.01
84 85 8.519799 TGTTCTTTTCTTGTAATATCCCATCC 57.480 34.615 0.00 0.00 0.00 3.51
94 95 8.956426 ACTGTTCAAGATGTTCTTTTCTTGTAA 58.044 29.630 11.24 4.04 45.77 2.41
107 108 5.065218 GCGGATATTTGACTGTTCAAGATGT 59.935 40.000 0.00 0.00 42.79 3.06
112 113 3.126858 GCTGCGGATATTTGACTGTTCAA 59.873 43.478 0.00 0.00 40.14 2.69
169 170 7.386299 CAGACAGAACCAATAGTAGATAATGCC 59.614 40.741 0.00 0.00 0.00 4.40
192 193 1.605457 CGGTAACAGCAGTTCTGCAGA 60.605 52.381 23.69 13.74 46.76 4.26
261 262 4.224370 CCTGTAGCTGGGGTCTAAAAACTA 59.776 45.833 0.00 0.00 0.00 2.24
317 322 4.078639 AGAACTGTCTTCAACAAGGGAG 57.921 45.455 0.00 0.00 37.45 4.30
329 334 5.307204 ACGAGACACTAAGTAGAACTGTCT 58.693 41.667 8.89 8.89 38.85 3.41
351 356 1.363807 GCAGGTGTTCAAGCCCAAC 59.636 57.895 0.00 0.00 0.00 3.77
535 540 2.158755 AGTGGGATAATTCTTGGCGAGG 60.159 50.000 0.97 0.00 0.00 4.63
583 593 8.824756 TGAACATAGAGGTAAGAGATGTTACT 57.175 34.615 0.00 0.00 40.03 2.24
716 727 3.822735 TGCTCTCAAAGAAAGGTTCCATG 59.177 43.478 0.00 0.00 0.00 3.66
853 947 4.518217 GACAACAAAGATCACAACAGTCG 58.482 43.478 0.00 0.00 0.00 4.18
858 952 5.848036 CAGATTCGACAACAAAGATCACAAC 59.152 40.000 0.00 0.00 0.00 3.32
862 956 4.690748 GTCCAGATTCGACAACAAAGATCA 59.309 41.667 0.00 0.00 0.00 2.92
864 958 3.679980 CGTCCAGATTCGACAACAAAGAT 59.320 43.478 0.00 0.00 0.00 2.40
1166 1262 5.851177 GGAAAATGTACAACACGACATTGAG 59.149 40.000 0.00 0.00 43.73 3.02
1212 1308 3.679980 ACAGCACTGCTCAAAACTATACG 59.320 43.478 0.00 0.00 36.40 3.06
1412 1509 6.457851 AACTAAAACCACGACGAGTAAATC 57.542 37.500 0.00 0.00 0.00 2.17
1413 1510 6.849588 AAACTAAAACCACGACGAGTAAAT 57.150 33.333 0.00 0.00 0.00 1.40
1414 1511 6.312426 TCAAAACTAAAACCACGACGAGTAAA 59.688 34.615 0.00 0.00 0.00 2.01
1415 1512 5.809562 TCAAAACTAAAACCACGACGAGTAA 59.190 36.000 0.00 0.00 0.00 2.24
1416 1513 5.347342 TCAAAACTAAAACCACGACGAGTA 58.653 37.500 0.00 0.00 0.00 2.59
1417 1514 4.183101 TCAAAACTAAAACCACGACGAGT 58.817 39.130 0.00 0.00 0.00 4.18
1418 1515 4.782252 TCAAAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1419 1516 4.630940 AGTTCAAAACTAAAACCACGACGA 59.369 37.500 0.00 0.00 40.69 4.20
1420 1517 4.900664 AGTTCAAAACTAAAACCACGACG 58.099 39.130 0.00 0.00 40.69 5.12
1434 1531 2.681848 TCGCCGTGGTTTTAGTTCAAAA 59.318 40.909 0.00 0.00 33.66 2.44
1435 1532 2.031930 GTCGCCGTGGTTTTAGTTCAAA 59.968 45.455 0.00 0.00 0.00 2.69
1436 1533 1.598601 GTCGCCGTGGTTTTAGTTCAA 59.401 47.619 0.00 0.00 0.00 2.69
1437 1534 1.219646 GTCGCCGTGGTTTTAGTTCA 58.780 50.000 0.00 0.00 0.00 3.18
1438 1535 0.162294 CGTCGCCGTGGTTTTAGTTC 59.838 55.000 0.00 0.00 0.00 3.01
1439 1536 0.249405 TCGTCGCCGTGGTTTTAGTT 60.249 50.000 0.00 0.00 35.01 2.24
1440 1537 0.665369 CTCGTCGCCGTGGTTTTAGT 60.665 55.000 0.00 0.00 35.01 2.24
1441 1538 0.665369 ACTCGTCGCCGTGGTTTTAG 60.665 55.000 0.00 0.00 35.01 1.85
1442 1539 0.595588 TACTCGTCGCCGTGGTTTTA 59.404 50.000 0.00 0.00 35.01 1.52
1443 1540 0.249405 TTACTCGTCGCCGTGGTTTT 60.249 50.000 0.00 0.00 35.01 2.43
1444 1541 0.249405 TTTACTCGTCGCCGTGGTTT 60.249 50.000 0.00 0.00 35.01 3.27
1445 1542 0.037975 ATTTACTCGTCGCCGTGGTT 60.038 50.000 0.00 0.00 35.01 3.67
1446 1543 0.457337 GATTTACTCGTCGCCGTGGT 60.457 55.000 0.00 0.00 35.01 4.16
1447 1544 1.469126 CGATTTACTCGTCGCCGTGG 61.469 60.000 0.00 0.00 42.56 4.94
1448 1545 1.469126 CCGATTTACTCGTCGCCGTG 61.469 60.000 0.00 0.00 46.18 4.94
1449 1546 1.226491 CCGATTTACTCGTCGCCGT 60.226 57.895 0.00 0.00 46.18 5.68
1450 1547 0.523968 TTCCGATTTACTCGTCGCCG 60.524 55.000 0.00 0.00 46.18 6.46
1451 1548 0.919300 GTTCCGATTTACTCGTCGCC 59.081 55.000 0.00 0.00 46.18 5.54
1452 1549 0.564767 CGTTCCGATTTACTCGTCGC 59.435 55.000 0.00 0.00 46.18 5.19
1453 1550 1.186030 CCGTTCCGATTTACTCGTCG 58.814 55.000 0.00 0.00 46.18 5.12
1454 1551 2.448219 CTCCGTTCCGATTTACTCGTC 58.552 52.381 0.00 0.00 46.18 4.20
1455 1552 1.133790 CCTCCGTTCCGATTTACTCGT 59.866 52.381 0.00 0.00 46.18 4.18
1457 1554 1.753073 TCCCTCCGTTCCGATTTACTC 59.247 52.381 0.00 0.00 0.00 2.59
1458 1555 1.755380 CTCCCTCCGTTCCGATTTACT 59.245 52.381 0.00 0.00 0.00 2.24
1459 1556 1.479730 ACTCCCTCCGTTCCGATTTAC 59.520 52.381 0.00 0.00 0.00 2.01
1460 1557 1.856629 ACTCCCTCCGTTCCGATTTA 58.143 50.000 0.00 0.00 0.00 1.40
1461 1558 1.755380 CTACTCCCTCCGTTCCGATTT 59.245 52.381 0.00 0.00 0.00 2.17
1462 1559 1.400737 CTACTCCCTCCGTTCCGATT 58.599 55.000 0.00 0.00 0.00 3.34
1463 1560 0.467659 CCTACTCCCTCCGTTCCGAT 60.468 60.000 0.00 0.00 0.00 4.18
1464 1561 1.077212 CCTACTCCCTCCGTTCCGA 60.077 63.158 0.00 0.00 0.00 4.55
1465 1562 1.379576 ACCTACTCCCTCCGTTCCG 60.380 63.158 0.00 0.00 0.00 4.30
1466 1563 0.614134 ACACCTACTCCCTCCGTTCC 60.614 60.000 0.00 0.00 0.00 3.62
1467 1564 0.816373 GACACCTACTCCCTCCGTTC 59.184 60.000 0.00 0.00 0.00 3.95
1468 1565 0.113776 TGACACCTACTCCCTCCGTT 59.886 55.000 0.00 0.00 0.00 4.44
1469 1566 0.323542 CTGACACCTACTCCCTCCGT 60.324 60.000 0.00 0.00 0.00 4.69
1470 1567 0.323542 ACTGACACCTACTCCCTCCG 60.324 60.000 0.00 0.00 0.00 4.63
1471 1568 1.187087 CACTGACACCTACTCCCTCC 58.813 60.000 0.00 0.00 0.00 4.30
1472 1569 0.533032 GCACTGACACCTACTCCCTC 59.467 60.000 0.00 0.00 0.00 4.30
1473 1570 0.178932 TGCACTGACACCTACTCCCT 60.179 55.000 0.00 0.00 0.00 4.20
1474 1571 0.905357 ATGCACTGACACCTACTCCC 59.095 55.000 0.00 0.00 0.00 4.30
1475 1572 1.550524 TGATGCACTGACACCTACTCC 59.449 52.381 0.00 0.00 0.00 3.85
1476 1573 2.417924 CCTGATGCACTGACACCTACTC 60.418 54.545 0.00 0.00 0.00 2.59
1477 1574 1.552337 CCTGATGCACTGACACCTACT 59.448 52.381 0.00 0.00 0.00 2.57
1585 1682 6.863126 GTCCCATTCCGATAGCATTTAAAATG 59.137 38.462 0.00 0.00 0.00 2.32
1605 1702 1.879380 CTTTTCAGCGTGATTGTCCCA 59.121 47.619 0.00 0.00 0.00 4.37
1785 1883 7.404671 ACTCTAAACAACAGAATTGGTTTGT 57.595 32.000 0.00 0.00 35.33 2.83
1832 1932 7.484035 AAATACACAAGAAGAGAACAGACAC 57.516 36.000 0.00 0.00 0.00 3.67
1896 1996 5.120986 GGAACCGCAAAAACTGAAAGAAAAA 59.879 36.000 0.00 0.00 37.43 1.94
1901 2001 2.469826 GGGAACCGCAAAAACTGAAAG 58.530 47.619 0.00 0.00 40.86 2.62
2061 2176 8.263640 AGGGCAGTGATCTATAAGCAATATAAG 58.736 37.037 0.00 0.00 0.00 1.73
2125 2240 1.312884 AGGGGCATCAAAGGGATCTT 58.687 50.000 0.00 0.00 32.57 2.40
2135 2250 6.269077 CGGGTATATTATATGTAGGGGCATCA 59.731 42.308 0.00 0.00 0.00 3.07
2216 2331 1.815003 GCTAATGCTGCAACTCCAAGT 59.185 47.619 6.36 0.00 36.03 3.16
2252 2367 8.919145 TCTTTTGGTTCAAAAATAAGCTCCTTA 58.081 29.630 7.15 0.00 41.77 2.69
2382 2497 6.002082 ACAAGTAGGGTTCTCAAAATACCAC 58.998 40.000 0.00 0.00 33.51 4.16
2428 2544 2.842208 TGAACTGCCAAAACGTCTTG 57.158 45.000 0.00 0.00 0.00 3.02
2464 2580 5.072600 ACCCTCTGTTCCAAACTGTAATACA 59.927 40.000 0.00 0.00 0.00 2.29
2473 2589 0.668535 GCACACCCTCTGTTCCAAAC 59.331 55.000 0.00 0.00 0.00 2.93
2491 2607 2.108250 TCCCTATATGCCCTTGGAAAGC 59.892 50.000 0.00 0.00 44.44 3.51
2526 2642 6.367983 ACATGCCTGATGTGGTATTTCTTAT 58.632 36.000 0.00 0.00 44.12 1.73
2588 2704 1.689412 TGGCTACCACCGAGAGAGA 59.311 57.895 0.00 0.00 0.00 3.10
2667 2786 3.005261 CACCAACCCACGAAAAATCATGA 59.995 43.478 0.00 0.00 0.00 3.07
2860 2981 1.344087 ACATTATGGGACGGAGGGAGT 60.344 52.381 0.00 0.00 0.00 3.85
2923 3044 1.615384 GCTCCCTCCATCCCATAATGC 60.615 57.143 0.00 0.00 0.00 3.56
2943 3064 6.591448 TGCAGTTCAGATAGACATTGTAAGTG 59.409 38.462 0.00 0.00 0.00 3.16
2948 3069 4.223700 TCCTGCAGTTCAGATAGACATTGT 59.776 41.667 13.81 0.00 45.72 2.71
2980 3101 4.640805 TTAGCAGACTTTTTCGCTAACG 57.359 40.909 0.00 0.00 39.38 3.18
3022 3162 1.992557 ACCACAAGGCCTCCAGATTTA 59.007 47.619 5.23 0.00 39.06 1.40
3092 3233 3.134804 ACATCAACCAGGTGATAGGTAGC 59.865 47.826 0.00 0.00 36.04 3.58
3273 3423 0.885879 ATGCCGTGTGAGTAGTTCGA 59.114 50.000 0.00 0.00 0.00 3.71
3324 3474 1.705256 TGTTGTGTATTCGGCGAGTC 58.295 50.000 8.58 4.68 0.00 3.36
3375 3525 2.350772 CCTGCTTGATTGGTTTGTCGTC 60.351 50.000 0.00 0.00 0.00 4.20
3433 3584 3.028130 GGACAAACAAAAGAAGGTGGGA 58.972 45.455 0.00 0.00 0.00 4.37
3573 3725 0.182537 AGCCACTTGTGTTAGCACCA 59.817 50.000 7.29 0.00 44.65 4.17
3635 3790 2.124151 ATGCCACCATTCCCTCGC 60.124 61.111 0.00 0.00 0.00 5.03
3647 3802 1.274167 ACGGAGTTTTAGACGATGCCA 59.726 47.619 0.00 0.00 37.78 4.92
3654 3809 2.450609 TGGAGCACGGAGTTTTAGAC 57.549 50.000 0.00 0.00 41.61 2.59
3695 3850 4.421479 AGCTTCGTCGGGCGTCAG 62.421 66.667 0.49 0.54 42.13 3.51
3746 3902 2.378445 GGACTCTCTCCAAGCTTCAC 57.622 55.000 0.00 0.00 39.21 3.18
3782 3940 4.007659 AGAACCTGTTTCAACTTTGTCGT 58.992 39.130 0.00 0.00 36.57 4.34
3804 4095 4.555709 GTGTGGTGCCGTGGTGGA 62.556 66.667 0.00 0.00 42.00 4.02
3805 4096 4.866224 TGTGTGGTGCCGTGGTGG 62.866 66.667 0.00 0.00 42.50 4.61
3806 4097 2.826287 TTGTGTGGTGCCGTGGTG 60.826 61.111 0.00 0.00 0.00 4.17
3807 4098 2.826738 GTTGTGTGGTGCCGTGGT 60.827 61.111 0.00 0.00 0.00 4.16
3808 4099 2.826287 TGTTGTGTGGTGCCGTGG 60.826 61.111 0.00 0.00 0.00 4.94
3809 4100 2.407210 GTGTTGTGTGGTGCCGTG 59.593 61.111 0.00 0.00 0.00 4.94
3810 4101 2.826738 GGTGTTGTGTGGTGCCGT 60.827 61.111 0.00 0.00 0.00 5.68
3811 4102 2.515991 AGGTGTTGTGTGGTGCCG 60.516 61.111 0.00 0.00 0.00 5.69
3812 4103 3.119193 CAGGTGTTGTGTGGTGCC 58.881 61.111 0.00 0.00 0.00 5.01
3813 4104 2.340453 CTGCAGGTGTTGTGTGGTGC 62.340 60.000 5.57 0.00 0.00 5.01
3814 4105 1.729276 CTGCAGGTGTTGTGTGGTG 59.271 57.895 5.57 0.00 0.00 4.17
3815 4106 2.120909 GCTGCAGGTGTTGTGTGGT 61.121 57.895 17.12 0.00 0.00 4.16
3908 4203 1.268899 CGTGTTGGGTCTAGTTCGACT 59.731 52.381 0.00 0.00 34.38 4.18
3948 4243 2.037901 CTATGGCTGCTTCTCTCCTCA 58.962 52.381 0.00 0.00 0.00 3.86
3989 4284 5.123027 GCCAAAATTTGTTGTTGACTTGGAA 59.877 36.000 4.92 0.00 32.90 3.53
3992 4287 5.350914 TCTGCCAAAATTTGTTGTTGACTTG 59.649 36.000 4.92 0.00 0.00 3.16
4006 4301 0.678048 GTCGCCTCCTCTGCCAAAAT 60.678 55.000 0.00 0.00 0.00 1.82
4025 4320 5.758296 TCGCCTTAAAAACATAGCTCCTATG 59.242 40.000 9.95 9.95 46.43 2.23
4026 4321 5.758784 GTCGCCTTAAAAACATAGCTCCTAT 59.241 40.000 0.00 0.00 0.00 2.57
4027 4322 5.114081 GTCGCCTTAAAAACATAGCTCCTA 58.886 41.667 0.00 0.00 0.00 2.94
4028 4323 3.939592 GTCGCCTTAAAAACATAGCTCCT 59.060 43.478 0.00 0.00 0.00 3.69
4029 4324 3.242316 CGTCGCCTTAAAAACATAGCTCC 60.242 47.826 0.00 0.00 0.00 4.70
4030 4325 3.784525 GCGTCGCCTTAAAAACATAGCTC 60.785 47.826 5.75 0.00 0.00 4.09
4031 4326 2.095372 GCGTCGCCTTAAAAACATAGCT 59.905 45.455 5.75 0.00 0.00 3.32
4032 4327 2.437626 GCGTCGCCTTAAAAACATAGC 58.562 47.619 5.75 0.00 0.00 2.97
4033 4328 3.047613 GGCGTCGCCTTAAAAACATAG 57.952 47.619 28.98 0.00 46.69 2.23
4046 4341 4.745549 CTTAAAGCAAGGCGTCGC 57.254 55.556 9.22 9.22 0.00 5.19
4053 4348 1.508088 CCCAGCGCCTTAAAGCAAG 59.492 57.895 2.29 0.00 35.48 4.01
4054 4349 1.976474 CCCCAGCGCCTTAAAGCAA 60.976 57.895 2.29 0.00 35.48 3.91
4055 4350 2.361104 CCCCAGCGCCTTAAAGCA 60.361 61.111 2.29 0.00 35.48 3.91
4056 4351 3.140814 CCCCCAGCGCCTTAAAGC 61.141 66.667 2.29 0.00 0.00 3.51
4152 4447 4.673534 ATGTTTTAAAGGCGTCCGTAAG 57.326 40.909 0.00 0.00 0.00 2.34
4153 4448 4.093261 GCTATGTTTTAAAGGCGTCCGTAA 59.907 41.667 0.00 0.00 0.00 3.18
4154 4449 3.618150 GCTATGTTTTAAAGGCGTCCGTA 59.382 43.478 0.00 0.00 0.00 4.02
4155 4450 2.417586 GCTATGTTTTAAAGGCGTCCGT 59.582 45.455 0.00 0.00 0.00 4.69
4156 4451 2.417239 TGCTATGTTTTAAAGGCGTCCG 59.583 45.455 0.00 0.00 0.00 4.79
4157 4452 4.632538 ATGCTATGTTTTAAAGGCGTCC 57.367 40.909 0.00 0.00 0.00 4.79
4158 4453 5.526111 TCCTATGCTATGTTTTAAAGGCGTC 59.474 40.000 0.00 0.00 0.00 5.19
4159 4454 5.433526 TCCTATGCTATGTTTTAAAGGCGT 58.566 37.500 0.00 0.00 0.00 5.68
4160 4455 5.049405 CCTCCTATGCTATGTTTTAAAGGCG 60.049 44.000 0.00 0.00 0.00 5.52
4161 4456 5.241728 CCCTCCTATGCTATGTTTTAAAGGC 59.758 44.000 0.00 0.00 0.00 4.35
4162 4457 6.601332 TCCCTCCTATGCTATGTTTTAAAGG 58.399 40.000 0.00 0.00 0.00 3.11
4163 4458 7.227512 CACTCCCTCCTATGCTATGTTTTAAAG 59.772 40.741 0.00 0.00 0.00 1.85
4164 4459 7.054124 CACTCCCTCCTATGCTATGTTTTAAA 58.946 38.462 0.00 0.00 0.00 1.52
4165 4460 6.385759 TCACTCCCTCCTATGCTATGTTTTAA 59.614 38.462 0.00 0.00 0.00 1.52
4166 4461 5.903010 TCACTCCCTCCTATGCTATGTTTTA 59.097 40.000 0.00 0.00 0.00 1.52
4167 4462 4.721776 TCACTCCCTCCTATGCTATGTTTT 59.278 41.667 0.00 0.00 0.00 2.43
4168 4463 4.101741 GTCACTCCCTCCTATGCTATGTTT 59.898 45.833 0.00 0.00 0.00 2.83
4169 4464 3.643792 GTCACTCCCTCCTATGCTATGTT 59.356 47.826 0.00 0.00 0.00 2.71
4170 4465 3.235200 GTCACTCCCTCCTATGCTATGT 58.765 50.000 0.00 0.00 0.00 2.29
4171 4466 3.006323 GTGTCACTCCCTCCTATGCTATG 59.994 52.174 0.00 0.00 0.00 2.23
4172 4467 3.235200 GTGTCACTCCCTCCTATGCTAT 58.765 50.000 0.00 0.00 0.00 2.97
4173 4468 2.667470 GTGTCACTCCCTCCTATGCTA 58.333 52.381 0.00 0.00 0.00 3.49
4206 4501 0.762082 CTCTGGGCAGGCTATCTCCA 60.762 60.000 0.00 0.00 0.00 3.86
4286 4582 1.278537 TCAGCCCATGAGTGATGTGA 58.721 50.000 0.00 0.00 32.77 3.58
4334 4630 1.509644 CGCTCTGAGTTGCAAGGCAA 61.510 55.000 0.00 0.00 46.80 4.52
4344 4640 4.010575 AGCTGCTACGCTCTGAGT 57.989 55.556 0.00 0.00 34.57 3.41
4460 4756 2.419198 CCTCCAAGGCGATCCGAG 59.581 66.667 0.00 0.00 37.47 4.63
4501 4801 4.472470 TCATCTTCATCCACCTTCATGTCT 59.528 41.667 0.00 0.00 0.00 3.41
4622 4924 2.045536 GCTCTCACTGCTTGGGGG 60.046 66.667 0.00 0.00 0.00 5.40
4643 4945 1.152756 AAGTGCAGCGACCCCTTTT 60.153 52.632 0.00 0.00 0.00 2.27
4671 4973 1.072331 AGGTGCCTTGTTACTGGACAG 59.928 52.381 0.00 0.00 0.00 3.51
4715 5017 3.341469 TACCCTCGGCCCATCCCTT 62.341 63.158 0.00 0.00 0.00 3.95
4749 5051 2.187946 CCTCATCGCCTGGTGTCC 59.812 66.667 7.20 0.00 0.00 4.02
4758 5060 2.182842 GTGGCATGGTCCTCATCGC 61.183 63.158 0.00 0.00 32.92 4.58
4901 5205 4.176851 GCTCCCTCGACGACGACC 62.177 72.222 5.75 0.00 43.81 4.79
4934 5242 0.323302 TGCTTTGGCTACGGACATGA 59.677 50.000 0.00 0.00 39.59 3.07
4956 5264 2.749441 GCTGCCTCAGGTGCTTCC 60.749 66.667 0.00 0.00 31.21 3.46
5029 5343 4.487412 GCCCGTCATTGCTGCTGC 62.487 66.667 8.89 8.89 40.20 5.25
5051 5365 1.602888 ACGACGTCAGCACCTACCT 60.603 57.895 17.16 0.00 0.00 3.08
5060 5374 1.210413 CTGGTCCTCACGACGTCAG 59.790 63.158 17.16 10.90 42.99 3.51
5063 5377 0.243907 CAATCTGGTCCTCACGACGT 59.756 55.000 0.00 0.00 42.99 4.34
5129 5443 2.423898 CCGACCGTGCAGGGACTAT 61.424 63.158 31.22 9.34 46.96 2.12
5279 5624 2.032681 GTGGCGAACTTCAGGCCT 59.967 61.111 0.00 0.00 46.97 5.19
5377 5722 1.666553 CGGTTACTGCTGTTCCGCA 60.667 57.895 20.10 0.00 36.40 5.69
5383 5728 1.585006 CTCGTCCGGTTACTGCTGT 59.415 57.895 0.00 0.66 0.00 4.40
5485 5833 1.310216 TGCTGCATGCCTCATGTGAC 61.310 55.000 16.68 0.00 43.10 3.67
5517 5880 4.161295 CCGCCGAGGCAAGATCCA 62.161 66.667 15.03 0.00 42.06 3.41
5550 5914 3.877450 GCCAGATCCGCCCCATCA 61.877 66.667 0.00 0.00 0.00 3.07
5617 5984 2.812011 ACTTACAGGCCACGTCAAAATC 59.188 45.455 5.01 0.00 0.00 2.17
5618 5985 2.858745 ACTTACAGGCCACGTCAAAAT 58.141 42.857 5.01 0.00 0.00 1.82
5619 5986 2.335316 ACTTACAGGCCACGTCAAAA 57.665 45.000 5.01 0.00 0.00 2.44
5620 5987 2.215196 GAACTTACAGGCCACGTCAAA 58.785 47.619 5.01 0.00 0.00 2.69
5621 5988 1.139256 TGAACTTACAGGCCACGTCAA 59.861 47.619 5.01 0.00 0.00 3.18
5622 5989 0.753867 TGAACTTACAGGCCACGTCA 59.246 50.000 5.01 0.00 0.00 4.35
5623 5990 2.094762 ATGAACTTACAGGCCACGTC 57.905 50.000 5.01 0.00 0.00 4.34
5624 5991 2.561478 AATGAACTTACAGGCCACGT 57.439 45.000 5.01 3.86 0.00 4.49
5625 5992 3.596214 ACTAATGAACTTACAGGCCACG 58.404 45.455 5.01 0.00 0.00 4.94
5626 5993 7.048512 AGATTACTAATGAACTTACAGGCCAC 58.951 38.462 5.01 0.00 0.00 5.01
5627 5994 7.195374 AGATTACTAATGAACTTACAGGCCA 57.805 36.000 5.01 0.00 0.00 5.36
5628 5995 8.202137 TGTAGATTACTAATGAACTTACAGGCC 58.798 37.037 0.00 0.00 0.00 5.19
5629 5996 9.032420 GTGTAGATTACTAATGAACTTACAGGC 57.968 37.037 0.00 0.00 0.00 4.85
5635 6002 9.355215 CGAAGTGTGTAGATTACTAATGAACTT 57.645 33.333 0.00 0.00 0.00 2.66
5636 6003 8.521176 ACGAAGTGTGTAGATTACTAATGAACT 58.479 33.333 0.00 0.00 42.51 3.01
5794 6163 6.393990 ACTGACAACATGCTAAACAAAAACA 58.606 32.000 0.00 0.00 0.00 2.83
5823 6192 7.665922 TGGAGGGAGAGTATCAATCCATATAT 58.334 38.462 6.18 0.00 38.49 0.86
5845 6214 7.867403 GCACAAAAGAAATTCAGTAAATCTGGA 59.133 33.333 0.00 0.00 43.76 3.86
5922 6291 6.259608 CCAAAAGCAATGTGAAAAACCATGTA 59.740 34.615 0.00 0.00 0.00 2.29
5927 6296 3.951306 GCCAAAAGCAATGTGAAAAACC 58.049 40.909 0.00 0.00 42.97 3.27
6046 6415 3.350219 TCCCAAAGATCTTGTACCTGC 57.650 47.619 9.17 0.00 0.00 4.85
6178 6551 3.678056 TCTCGCTGTAACCTGACAAAT 57.322 42.857 0.00 0.00 0.00 2.32
6440 6826 4.638865 ACCGCTAAGAAACAGTCAAAGTTT 59.361 37.500 0.00 0.00 41.53 2.66
6528 6930 5.819379 GCATGTTGGATCTCATCTTAGTTCA 59.181 40.000 0.00 0.00 0.00 3.18
6529 6931 6.054295 AGCATGTTGGATCTCATCTTAGTTC 58.946 40.000 0.00 0.00 0.00 3.01
6562 6964 2.423577 AGGAGCCATTACACGACAAAC 58.576 47.619 0.00 0.00 0.00 2.93
6580 6982 8.819974 CAAAAGGCATATATAAAACTTGCAAGG 58.180 33.333 29.18 12.28 35.04 3.61
6606 7008 6.261826 AGGTAGCAAAGCATCATCTGAATTAC 59.738 38.462 0.00 0.00 0.00 1.89
6607 7009 6.359804 AGGTAGCAAAGCATCATCTGAATTA 58.640 36.000 0.00 0.00 0.00 1.40
6631 7033 3.561313 GCCATCCTAGTGTTCCTTTCCAA 60.561 47.826 0.00 0.00 0.00 3.53
6652 7054 9.237846 GCAACTATGGAAACTCTTATAAAATGC 57.762 33.333 0.00 0.00 0.00 3.56
6723 7125 8.538409 AAAAATTGACCTGAAATAAGACATGC 57.462 30.769 0.00 0.00 0.00 4.06
6744 7146 3.823281 TGCGGACCTCGGATATAAAAA 57.177 42.857 0.00 0.00 39.69 1.94
6956 7359 3.484806 TGGCAACCCACGTCCTGT 61.485 61.111 0.00 0.00 35.79 4.00
7016 7419 5.008217 TCCCAAAAATGTGTACTCTTTGTCG 59.992 40.000 0.00 0.00 0.00 4.35
7021 7426 5.243730 CCATGTCCCAAAAATGTGTACTCTT 59.756 40.000 0.00 0.00 0.00 2.85
7022 7427 4.766891 CCATGTCCCAAAAATGTGTACTCT 59.233 41.667 0.00 0.00 0.00 3.24
7064 7469 2.645192 CCCGGGCCATCAACCAAAC 61.645 63.158 8.08 0.00 0.00 2.93
7131 7536 6.652245 GGCTTTCAACAAAGACAAATCATTG 58.348 36.000 0.00 0.00 45.99 2.82
7156 7561 0.178767 TCCGGTGATCAGGCATGAAG 59.821 55.000 4.62 0.00 39.39 3.02
7172 7577 4.475944 GAAAACATCCACAAGAACATCCG 58.524 43.478 0.00 0.00 0.00 4.18
7214 7619 8.257306 TGCAAGTCTAGACAATATAACATGACA 58.743 33.333 24.44 8.35 0.00 3.58
7321 7730 6.587990 TCGTGCTTTGAAACATTTCTTTTCAA 59.412 30.769 6.23 6.23 46.36 2.69
7372 7781 8.333908 GCAATGACATGTTCTAGATTAGTCAAG 58.666 37.037 16.58 13.97 37.95 3.02
7382 7791 6.834959 AGAATACGCAATGACATGTTCTAG 57.165 37.500 0.00 0.00 0.00 2.43
7401 7810 2.767960 GCCATTGTCATCCCCAAAGAAT 59.232 45.455 0.00 0.00 0.00 2.40
7415 7825 2.586425 AGTAGTTGCAAGTGCCATTGT 58.414 42.857 17.21 0.00 41.18 2.71
7417 7827 3.490348 AGAAGTAGTTGCAAGTGCCATT 58.510 40.909 17.21 6.79 41.18 3.16
7422 7832 7.948278 AACTAACTAGAAGTAGTTGCAAGTG 57.052 36.000 17.21 0.56 46.91 3.16
7505 7915 2.614057 CTCACCTAATTGATCCCAACGC 59.386 50.000 0.00 0.00 34.72 4.84
7548 7958 2.964740 TCGCTTGAACAAGATCAGGAG 58.035 47.619 17.19 0.00 40.79 3.69
7573 7990 1.984570 AGTAGGGAGCGAGCTTGCA 60.985 57.895 27.59 3.56 37.31 4.08
7581 7998 3.261981 ACATAAAACCAGTAGGGAGCG 57.738 47.619 0.00 0.00 41.15 5.03
7605 8022 2.222227 AGATTTCCCTTTGCTCCACC 57.778 50.000 0.00 0.00 0.00 4.61
7609 8026 7.336931 TGTCAAACTATAGATTTCCCTTTGCTC 59.663 37.037 6.78 3.27 0.00 4.26
7610 8027 7.175104 TGTCAAACTATAGATTTCCCTTTGCT 58.825 34.615 6.78 0.00 0.00 3.91
7637 8101 5.239087 CAGCAGCCAAACATTTTGGTAAAAT 59.761 36.000 17.01 0.00 41.57 1.82
7681 8146 4.974438 TGAAGGCGTGGGAGGGGT 62.974 66.667 0.00 0.00 0.00 4.95
7698 8164 1.069765 CGCTAACGAGATGGGCCAT 59.930 57.895 21.39 21.39 43.93 4.40
7701 8167 2.967615 GCCGCTAACGAGATGGGC 60.968 66.667 0.00 0.00 43.93 5.36
7702 8168 1.592669 CAGCCGCTAACGAGATGGG 60.593 63.158 0.00 0.00 43.93 4.00
7730 8196 0.735471 CTCGTCTCCTCATCGCTCAA 59.265 55.000 0.00 0.00 0.00 3.02
7735 8201 2.196925 CCCCCTCGTCTCCTCATCG 61.197 68.421 0.00 0.00 0.00 3.84
7736 8202 3.863606 CCCCCTCGTCTCCTCATC 58.136 66.667 0.00 0.00 0.00 2.92
7753 8229 8.888579 AAATATACTAGTATGACAGTGTTGCC 57.111 34.615 23.09 0.00 0.00 4.52
7776 8252 9.303116 TCACCTCCTTTTGTTGCTAATATAAAA 57.697 29.630 0.00 0.00 0.00 1.52
7780 8256 6.322201 CCATCACCTCCTTTTGTTGCTAATAT 59.678 38.462 0.00 0.00 0.00 1.28
7795 8271 0.400525 TCCCCTGATCCATCACCTCC 60.401 60.000 0.00 0.00 32.50 4.30
7819 8295 1.699634 GGTGCTCTAGGATAATGCCCA 59.300 52.381 0.00 0.00 0.00 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.