Multiple sequence alignment - TraesCS4B01G221100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G221100 | chr4B | 100.000 | 4587 | 0 | 0 | 1 | 4587 | 465030564 | 465025978 | 0.000000e+00 | 8471.0 |
1 | TraesCS4B01G221100 | chr4B | 100.000 | 558 | 0 | 0 | 4908 | 5465 | 465025657 | 465025100 | 0.000000e+00 | 1031.0 |
2 | TraesCS4B01G221100 | chr4B | 95.833 | 72 | 3 | 0 | 5110 | 5181 | 629963958 | 629963887 | 3.460000e-22 | 117.0 |
3 | TraesCS4B01G221100 | chr4B | 87.500 | 56 | 7 | 0 | 4953 | 5008 | 465025558 | 465025503 | 1.270000e-06 | 65.8 |
4 | TraesCS4B01G221100 | chr4A | 89.936 | 2653 | 156 | 35 | 1 | 2580 | 86849664 | 86852278 | 0.000000e+00 | 3317.0 |
5 | TraesCS4B01G221100 | chr4A | 90.801 | 1935 | 114 | 32 | 2613 | 4514 | 86852276 | 86854179 | 0.000000e+00 | 2529.0 |
6 | TraesCS4B01G221100 | chr4A | 88.125 | 480 | 43 | 9 | 4996 | 5465 | 688854538 | 688855013 | 4.780000e-155 | 558.0 |
7 | TraesCS4B01G221100 | chr4D | 91.619 | 1909 | 86 | 24 | 776 | 2642 | 378505946 | 378504070 | 0.000000e+00 | 2571.0 |
8 | TraesCS4B01G221100 | chr4D | 90.337 | 890 | 37 | 16 | 2726 | 3597 | 378504039 | 378503181 | 0.000000e+00 | 1122.0 |
9 | TraesCS4B01G221100 | chr4D | 93.013 | 687 | 35 | 3 | 3620 | 4298 | 378503195 | 378502514 | 0.000000e+00 | 990.0 |
10 | TraesCS4B01G221100 | chr4D | 89.147 | 129 | 9 | 1 | 4391 | 4514 | 378502417 | 378502289 | 7.330000e-34 | 156.0 |
11 | TraesCS4B01G221100 | chr4D | 93.902 | 82 | 4 | 1 | 709 | 790 | 378508330 | 378508250 | 7.430000e-24 | 122.0 |
12 | TraesCS4B01G221100 | chr4D | 96.970 | 33 | 1 | 0 | 4349 | 4381 | 378502484 | 378502452 | 7.650000e-04 | 56.5 |
13 | TraesCS4B01G221100 | chr7D | 94.186 | 430 | 16 | 1 | 5045 | 5465 | 4742125 | 4742554 | 0.000000e+00 | 647.0 |
14 | TraesCS4B01G221100 | chr7D | 86.813 | 546 | 55 | 11 | 4930 | 5465 | 995488 | 996026 | 1.310000e-165 | 593.0 |
15 | TraesCS4B01G221100 | chr7D | 85.780 | 436 | 53 | 8 | 7 | 440 | 506166434 | 506166006 | 2.320000e-123 | 453.0 |
16 | TraesCS4B01G221100 | chr7D | 94.231 | 52 | 2 | 1 | 4991 | 5042 | 4742045 | 4742095 | 1.630000e-10 | 78.7 |
17 | TraesCS4B01G221100 | chr3B | 92.791 | 430 | 22 | 1 | 5045 | 5465 | 119405128 | 119404699 | 1.010000e-171 | 614.0 |
18 | TraesCS4B01G221100 | chr3B | 93.548 | 403 | 16 | 2 | 5073 | 5465 | 773766834 | 773766432 | 4.710000e-165 | 592.0 |
19 | TraesCS4B01G221100 | chr3B | 94.663 | 356 | 18 | 1 | 5110 | 5465 | 188874770 | 188875124 | 8.000000e-153 | 551.0 |
20 | TraesCS4B01G221100 | chr3B | 84.568 | 324 | 25 | 8 | 5142 | 5465 | 777862629 | 777862331 | 1.150000e-76 | 298.0 |
21 | TraesCS4B01G221100 | chr3B | 78.012 | 332 | 32 | 19 | 34 | 362 | 269246540 | 269246833 | 2.620000e-38 | 171.0 |
22 | TraesCS4B01G221100 | chr6B | 86.604 | 530 | 54 | 12 | 4942 | 5463 | 595033980 | 595034500 | 2.210000e-158 | 569.0 |
23 | TraesCS4B01G221100 | chr6B | 89.885 | 435 | 25 | 3 | 5050 | 5465 | 52108068 | 52108502 | 4.820000e-150 | 542.0 |
24 | TraesCS4B01G221100 | chr6B | 93.820 | 356 | 22 | 0 | 5110 | 5465 | 689227241 | 689226886 | 2.240000e-148 | 536.0 |
25 | TraesCS4B01G221100 | chr6B | 76.316 | 608 | 91 | 28 | 57 | 661 | 311555669 | 311556226 | 5.390000e-70 | 276.0 |
26 | TraesCS4B01G221100 | chr6B | 84.426 | 244 | 14 | 11 | 1 | 243 | 348090891 | 348091111 | 9.220000e-53 | 219.0 |
27 | TraesCS4B01G221100 | chr7B | 90.887 | 417 | 32 | 5 | 5050 | 5465 | 154749398 | 154748987 | 6.180000e-154 | 555.0 |
28 | TraesCS4B01G221100 | chr7B | 87.170 | 265 | 31 | 3 | 48 | 311 | 534403069 | 534402807 | 1.150000e-76 | 298.0 |
29 | TraesCS4B01G221100 | chr1B | 94.678 | 357 | 17 | 2 | 5110 | 5465 | 477936161 | 477935806 | 2.220000e-153 | 553.0 |
30 | TraesCS4B01G221100 | chr1B | 89.904 | 416 | 38 | 3 | 5050 | 5465 | 644093360 | 644093771 | 2.900000e-147 | 532.0 |
31 | TraesCS4B01G221100 | chr7A | 93.557 | 357 | 21 | 1 | 5111 | 5465 | 712826902 | 712827258 | 1.040000e-146 | 531.0 |
32 | TraesCS4B01G221100 | chr2B | 85.255 | 529 | 59 | 15 | 4939 | 5465 | 793258713 | 793258202 | 1.350000e-145 | 527.0 |
33 | TraesCS4B01G221100 | chr2B | 90.411 | 73 | 7 | 0 | 1 | 73 | 779960798 | 779960870 | 4.510000e-16 | 97.1 |
34 | TraesCS4B01G221100 | chr2D | 82.428 | 626 | 80 | 11 | 51 | 675 | 651030535 | 651031131 | 2.260000e-143 | 520.0 |
35 | TraesCS4B01G221100 | chr5D | 88.493 | 365 | 33 | 7 | 1 | 362 | 490784949 | 490784591 | 3.020000e-117 | 433.0 |
36 | TraesCS4B01G221100 | chr5A | 85.926 | 405 | 43 | 5 | 5074 | 5465 | 662250718 | 662250315 | 2.350000e-113 | 420.0 |
37 | TraesCS4B01G221100 | chr5A | 85.399 | 363 | 43 | 6 | 5084 | 5437 | 693123932 | 693123571 | 8.650000e-98 | 368.0 |
38 | TraesCS4B01G221100 | chr5A | 89.686 | 223 | 23 | 0 | 5243 | 5465 | 567205128 | 567204906 | 8.960000e-73 | 285.0 |
39 | TraesCS4B01G221100 | chr5B | 87.263 | 369 | 37 | 3 | 1 | 368 | 605324925 | 605324566 | 3.940000e-111 | 412.0 |
40 | TraesCS4B01G221100 | chr3D | 81.268 | 347 | 39 | 16 | 17 | 359 | 474124500 | 474124176 | 1.950000e-64 | 257.0 |
41 | TraesCS4B01G221100 | chr6D | 85.317 | 252 | 13 | 6 | 1 | 251 | 262432535 | 262432307 | 7.070000e-59 | 239.0 |
42 | TraesCS4B01G221100 | chr6A | 83.137 | 255 | 23 | 14 | 1 | 243 | 322699557 | 322699803 | 1.190000e-51 | 215.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS4B01G221100 | chr4B | 465025100 | 465030564 | 5464 | True | 3189.266667 | 8471 | 95.833333 | 1 | 5465 | 3 | chr4B.!!$R2 | 5464 |
1 | TraesCS4B01G221100 | chr4A | 86849664 | 86854179 | 4515 | False | 2923.000000 | 3317 | 90.368500 | 1 | 4514 | 2 | chr4A.!!$F2 | 4513 |
2 | TraesCS4B01G221100 | chr4D | 378502289 | 378508330 | 6041 | True | 836.250000 | 2571 | 92.498000 | 709 | 4514 | 6 | chr4D.!!$R1 | 3805 |
3 | TraesCS4B01G221100 | chr7D | 995488 | 996026 | 538 | False | 593.000000 | 593 | 86.813000 | 4930 | 5465 | 1 | chr7D.!!$F1 | 535 |
4 | TraesCS4B01G221100 | chr7D | 4742045 | 4742554 | 509 | False | 362.850000 | 647 | 94.208500 | 4991 | 5465 | 2 | chr7D.!!$F2 | 474 |
5 | TraesCS4B01G221100 | chr6B | 595033980 | 595034500 | 520 | False | 569.000000 | 569 | 86.604000 | 4942 | 5463 | 1 | chr6B.!!$F4 | 521 |
6 | TraesCS4B01G221100 | chr6B | 311555669 | 311556226 | 557 | False | 276.000000 | 276 | 76.316000 | 57 | 661 | 1 | chr6B.!!$F2 | 604 |
7 | TraesCS4B01G221100 | chr2B | 793258202 | 793258713 | 511 | True | 527.000000 | 527 | 85.255000 | 4939 | 5465 | 1 | chr2B.!!$R1 | 526 |
8 | TraesCS4B01G221100 | chr2D | 651030535 | 651031131 | 596 | False | 520.000000 | 520 | 82.428000 | 51 | 675 | 1 | chr2D.!!$F1 | 624 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
947 | 3308 | 0.107945 | GGCCAGTCCAGTGATGAGAC | 60.108 | 60.0 | 0.0 | 0.0 | 34.01 | 3.36 | F |
1730 | 4126 | 0.317160 | TGGCGTCTCATTCGTCAGTT | 59.683 | 50.0 | 0.0 | 0.0 | 37.98 | 3.16 | F |
3034 | 5477 | 0.392706 | CTGCCACCACGCCAGATATA | 59.607 | 55.0 | 0.0 | 0.0 | 0.00 | 0.86 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
2829 | 5268 | 1.000955 | ACCGCAGAGACTTCAATCGTT | 59.999 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 | R |
3707 | 6170 | 1.070445 | CTTTCCAGCAATGTTGGCCAA | 59.930 | 47.619 | 16.05 | 16.05 | 35.62 | 4.52 | R |
4535 | 7048 | 0.166814 | CTCTTTTTCGGCGCTCTTGG | 59.833 | 55.000 | 7.64 | 0.00 | 0.00 | 3.61 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 5.343715 | TCCTAGTCACATAACCAAACCCTA | 58.656 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
29 | 30 | 5.424252 | TCCTAGTCACATAACCAAACCCTAG | 59.576 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
46 | 47 | 5.224441 | ACCCTAGCCCTAACATAGAAATCA | 58.776 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
101 | 102 | 5.070847 | ACCATAACCCTAACCCTAACATACG | 59.929 | 44.000 | 0.00 | 0.00 | 0.00 | 3.06 |
153 | 155 | 5.468592 | TGCATATGCTAAACACCAAACAAG | 58.531 | 37.500 | 27.13 | 0.00 | 42.66 | 3.16 |
214 | 216 | 5.487845 | AGAACTAGGGTTTGCCTATACTTGT | 59.512 | 40.000 | 0.00 | 0.00 | 35.58 | 3.16 |
221 | 223 | 5.585047 | GGGTTTGCCTATACTTGTAAGACTG | 59.415 | 44.000 | 0.00 | 0.00 | 34.45 | 3.51 |
233 | 235 | 3.411446 | TGTAAGACTGGAGCAAATGTGG | 58.589 | 45.455 | 0.00 | 0.00 | 0.00 | 4.17 |
262 | 265 | 6.136155 | TTTTTGGTTGAAAAGGAGAGGATCT | 58.864 | 36.000 | 0.00 | 0.00 | 40.95 | 2.75 |
290 | 294 | 2.661176 | TACCTTGAGGGAGGGATTGT | 57.339 | 50.000 | 1.54 | 0.00 | 41.31 | 2.71 |
311 | 315 | 4.829064 | TGGTCGAAATCCACAAAGAAAG | 57.171 | 40.909 | 0.00 | 0.00 | 0.00 | 2.62 |
350 | 354 | 2.948889 | TGAGGAGGGATTTGAGAGGA | 57.051 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
360 | 364 | 4.285863 | GGATTTGAGAGGAGGAGAGAGAA | 58.714 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
361 | 365 | 4.714308 | GGATTTGAGAGGAGGAGAGAGAAA | 59.286 | 45.833 | 0.00 | 0.00 | 0.00 | 2.52 |
369 | 377 | 4.434195 | AGGAGGAGAGAGAAAGGAAACAT | 58.566 | 43.478 | 0.00 | 0.00 | 0.00 | 2.71 |
374 | 382 | 2.907042 | AGAGAGAAAGGAAACATCGGGT | 59.093 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
376 | 384 | 2.084546 | GAGAAAGGAAACATCGGGTGG | 58.915 | 52.381 | 0.00 | 0.00 | 0.00 | 4.61 |
421 | 429 | 2.842462 | TGTGTGAGTCGGGCTGGT | 60.842 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
424 | 432 | 2.137528 | TGTGAGTCGGGCTGGTCAA | 61.138 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
431 | 439 | 2.610859 | GGGCTGGTCAAGGAGGGA | 60.611 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
485 | 493 | 2.603412 | CGTCTTACAGAGAGGCGCTATG | 60.603 | 54.545 | 11.39 | 11.39 | 41.58 | 2.23 |
501 | 521 | 2.564947 | GCTATGCTACCTATGAGCTGGT | 59.435 | 50.000 | 0.00 | 0.00 | 40.76 | 4.00 |
503 | 523 | 1.414158 | TGCTACCTATGAGCTGGTCC | 58.586 | 55.000 | 4.17 | 0.00 | 40.76 | 4.46 |
520 | 540 | 2.456577 | GTCCGTACTTAACCAGGGGTA | 58.543 | 52.381 | 0.00 | 0.00 | 33.12 | 3.69 |
572 | 592 | 1.367840 | GAGGAGTGTGGCGTCTGTT | 59.632 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
581 | 601 | 1.264749 | TGGCGTCTGTTAGATGGGCT | 61.265 | 55.000 | 0.00 | 0.00 | 31.96 | 5.19 |
587 | 607 | 3.319405 | CGTCTGTTAGATGGGCTCTATGT | 59.681 | 47.826 | 0.00 | 0.00 | 36.35 | 2.29 |
634 | 655 | 2.418334 | GGCACTACCCGAAAGAGTTAGG | 60.418 | 54.545 | 0.00 | 0.00 | 0.00 | 2.69 |
677 | 698 | 8.539674 | GTCCACAGTTTATTTTGTGAATTTGTC | 58.460 | 33.333 | 6.21 | 0.00 | 45.79 | 3.18 |
700 | 721 | 3.613563 | CGCACACGTGTTATTTTTGTCT | 58.386 | 40.909 | 20.79 | 0.00 | 33.53 | 3.41 |
782 | 829 | 2.305927 | AGACATCACATCCTTTTCCCGT | 59.694 | 45.455 | 0.00 | 0.00 | 0.00 | 5.28 |
820 | 3181 | 1.003580 | ACATGCACGGTCCAGAATCTT | 59.996 | 47.619 | 0.00 | 0.00 | 0.00 | 2.40 |
821 | 3182 | 1.667724 | CATGCACGGTCCAGAATCTTC | 59.332 | 52.381 | 0.00 | 0.00 | 0.00 | 2.87 |
822 | 3183 | 0.389817 | TGCACGGTCCAGAATCTTCG | 60.390 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
823 | 3184 | 1.696832 | GCACGGTCCAGAATCTTCGC | 61.697 | 60.000 | 0.00 | 0.00 | 0.00 | 4.70 |
824 | 3185 | 0.108615 | CACGGTCCAGAATCTTCGCT | 60.109 | 55.000 | 0.00 | 0.00 | 0.00 | 4.93 |
921 | 3282 | 5.009110 | CCACTCGAGCTCAAGATTCTGTATA | 59.991 | 44.000 | 13.61 | 0.00 | 0.00 | 1.47 |
922 | 3283 | 6.294453 | CCACTCGAGCTCAAGATTCTGTATAT | 60.294 | 42.308 | 13.61 | 0.00 | 0.00 | 0.86 |
923 | 3284 | 7.144661 | CACTCGAGCTCAAGATTCTGTATATT | 58.855 | 38.462 | 13.61 | 0.00 | 0.00 | 1.28 |
924 | 3285 | 7.325821 | CACTCGAGCTCAAGATTCTGTATATTC | 59.674 | 40.741 | 13.61 | 0.00 | 0.00 | 1.75 |
925 | 3286 | 7.013750 | ACTCGAGCTCAAGATTCTGTATATTCA | 59.986 | 37.037 | 13.61 | 0.00 | 0.00 | 2.57 |
926 | 3287 | 7.366513 | TCGAGCTCAAGATTCTGTATATTCAG | 58.633 | 38.462 | 15.40 | 3.05 | 36.85 | 3.02 |
927 | 3288 | 6.585702 | CGAGCTCAAGATTCTGTATATTCAGG | 59.414 | 42.308 | 15.40 | 0.00 | 36.25 | 3.86 |
928 | 3289 | 6.767456 | AGCTCAAGATTCTGTATATTCAGGG | 58.233 | 40.000 | 9.23 | 0.00 | 36.25 | 4.45 |
929 | 3290 | 5.936956 | GCTCAAGATTCTGTATATTCAGGGG | 59.063 | 44.000 | 9.23 | 0.00 | 36.25 | 4.79 |
930 | 3291 | 5.869579 | TCAAGATTCTGTATATTCAGGGGC | 58.130 | 41.667 | 9.23 | 0.30 | 36.25 | 5.80 |
931 | 3292 | 4.917906 | AGATTCTGTATATTCAGGGGCC | 57.082 | 45.455 | 9.23 | 0.00 | 36.25 | 5.80 |
932 | 3293 | 4.242811 | AGATTCTGTATATTCAGGGGCCA | 58.757 | 43.478 | 4.39 | 0.00 | 36.25 | 5.36 |
933 | 3294 | 4.288105 | AGATTCTGTATATTCAGGGGCCAG | 59.712 | 45.833 | 4.39 | 0.00 | 36.25 | 4.85 |
947 | 3308 | 0.107945 | GGCCAGTCCAGTGATGAGAC | 60.108 | 60.000 | 0.00 | 0.00 | 34.01 | 3.36 |
993 | 3354 | 0.976073 | GGAATCCCACTCCGAGTCCA | 60.976 | 60.000 | 0.00 | 0.00 | 42.68 | 4.02 |
1096 | 3457 | 1.200519 | CCCGTCCAACCTATCCAGAA | 58.799 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
1097 | 3458 | 1.557832 | CCCGTCCAACCTATCCAGAAA | 59.442 | 52.381 | 0.00 | 0.00 | 0.00 | 2.52 |
1102 | 3463 | 4.081309 | CGTCCAACCTATCCAGAAACCTTA | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
1255 | 3616 | 3.687102 | CGTCACCGCCACCAGGTA | 61.687 | 66.667 | 0.00 | 0.00 | 40.59 | 3.08 |
1269 | 3630 | 4.171103 | GGTAGTGGCGGGGCGAAT | 62.171 | 66.667 | 0.00 | 0.00 | 0.00 | 3.34 |
1281 | 3642 | 1.177256 | GGGCGAATAGAGGGAGCGTA | 61.177 | 60.000 | 0.00 | 0.00 | 0.00 | 4.42 |
1323 | 3684 | 2.511600 | GGGACAAGCATCGGGTCG | 60.512 | 66.667 | 0.00 | 0.00 | 32.39 | 4.79 |
1381 | 3742 | 3.142174 | GTGAGTTTCTCTTCCCCTTGTG | 58.858 | 50.000 | 0.00 | 0.00 | 0.00 | 3.33 |
1383 | 3744 | 1.777272 | AGTTTCTCTTCCCCTTGTGCT | 59.223 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
1400 | 3761 | 1.818060 | TGCTGCCGCATACAGAATTTT | 59.182 | 42.857 | 0.00 | 0.00 | 42.25 | 1.82 |
1472 | 3837 | 2.432444 | CAACGATGGAGGCCAGTAAAA | 58.568 | 47.619 | 5.01 | 0.00 | 36.75 | 1.52 |
1493 | 3858 | 9.341899 | GTAAAATGTGTACTGAATGAAATGTCC | 57.658 | 33.333 | 0.00 | 0.00 | 0.00 | 4.02 |
1596 | 3989 | 1.289160 | ACCACCCATATCAGTGCAGT | 58.711 | 50.000 | 0.00 | 0.00 | 32.48 | 4.40 |
1598 | 3991 | 1.671979 | CACCCATATCAGTGCAGTGG | 58.328 | 55.000 | 21.21 | 6.74 | 0.00 | 4.00 |
1701 | 4097 | 2.353839 | CAACTGGCGTTGCTGTGC | 60.354 | 61.111 | 8.75 | 0.00 | 43.47 | 4.57 |
1728 | 4124 | 1.645034 | ATTGGCGTCTCATTCGTCAG | 58.355 | 50.000 | 0.00 | 0.00 | 43.44 | 3.51 |
1730 | 4126 | 0.317160 | TGGCGTCTCATTCGTCAGTT | 59.683 | 50.000 | 0.00 | 0.00 | 37.98 | 3.16 |
1883 | 4287 | 9.060347 | ACATAATTTCACTCGCATATTTCATCT | 57.940 | 29.630 | 0.00 | 0.00 | 0.00 | 2.90 |
1886 | 4290 | 8.624701 | AATTTCACTCGCATATTTCATCTTTG | 57.375 | 30.769 | 0.00 | 0.00 | 0.00 | 2.77 |
1944 | 4367 | 4.697514 | GCAGTATGGCAGAACAGAATAGA | 58.302 | 43.478 | 5.67 | 0.00 | 35.86 | 1.98 |
1998 | 4421 | 1.219646 | GTTTCGTTCCAAGTGCCGTA | 58.780 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2238 | 4661 | 3.379445 | TCCAAGTCCGGCGAGGTC | 61.379 | 66.667 | 9.30 | 0.00 | 41.99 | 3.85 |
2355 | 4778 | 1.402787 | CCCAAGTGAACCAAGTGCTT | 58.597 | 50.000 | 0.00 | 0.00 | 0.00 | 3.91 |
2383 | 4806 | 5.907207 | TCTTCATGATAGGTACTGTTCTGC | 58.093 | 41.667 | 0.00 | 0.00 | 41.52 | 4.26 |
2491 | 4920 | 0.627986 | ACGGCCAGTACCCTAGTAGT | 59.372 | 55.000 | 2.24 | 0.00 | 32.01 | 2.73 |
2492 | 4921 | 1.846439 | ACGGCCAGTACCCTAGTAGTA | 59.154 | 52.381 | 2.24 | 0.00 | 30.64 | 1.82 |
2493 | 4922 | 2.158696 | ACGGCCAGTACCCTAGTAGTAG | 60.159 | 54.545 | 2.24 | 0.00 | 30.64 | 2.57 |
2494 | 4923 | 2.237643 | GGCCAGTACCCTAGTAGTAGC | 58.762 | 57.143 | 0.00 | 0.00 | 36.23 | 3.58 |
2495 | 4924 | 2.423947 | GGCCAGTACCCTAGTAGTAGCA | 60.424 | 54.545 | 0.00 | 0.00 | 38.02 | 3.49 |
2496 | 4925 | 2.622470 | GCCAGTACCCTAGTAGTAGCAC | 59.378 | 54.545 | 0.00 | 0.00 | 36.76 | 4.40 |
2497 | 4926 | 3.687838 | GCCAGTACCCTAGTAGTAGCACT | 60.688 | 52.174 | 0.00 | 0.00 | 36.76 | 4.40 |
2501 | 4930 | 6.297582 | CAGTACCCTAGTAGTAGCACTGTAT | 58.702 | 44.000 | 16.55 | 0.00 | 31.16 | 2.29 |
2502 | 4931 | 6.771749 | CAGTACCCTAGTAGTAGCACTGTATT | 59.228 | 42.308 | 16.55 | 5.02 | 31.16 | 1.89 |
2504 | 4933 | 8.156165 | AGTACCCTAGTAGTAGCACTGTATTAG | 58.844 | 40.741 | 0.00 | 0.00 | 29.97 | 1.73 |
2506 | 4935 | 8.038862 | ACCCTAGTAGTAGCACTGTATTAGTA | 57.961 | 38.462 | 0.00 | 0.00 | 37.60 | 1.82 |
2669 | 5107 | 1.149288 | TCCCAACCCAGACTACAGAGT | 59.851 | 52.381 | 0.00 | 0.00 | 39.20 | 3.24 |
2670 | 5108 | 2.380932 | TCCCAACCCAGACTACAGAGTA | 59.619 | 50.000 | 0.00 | 0.00 | 35.45 | 2.59 |
2671 | 5109 | 2.496470 | CCCAACCCAGACTACAGAGTAC | 59.504 | 54.545 | 0.00 | 0.00 | 35.45 | 2.73 |
2672 | 5110 | 3.162666 | CCAACCCAGACTACAGAGTACA | 58.837 | 50.000 | 0.00 | 0.00 | 35.45 | 2.90 |
2673 | 5111 | 3.193691 | CCAACCCAGACTACAGAGTACAG | 59.806 | 52.174 | 0.00 | 0.00 | 35.45 | 2.74 |
2675 | 5113 | 3.958018 | ACCCAGACTACAGAGTACAGAG | 58.042 | 50.000 | 0.00 | 0.00 | 35.45 | 3.35 |
2676 | 5114 | 3.331294 | ACCCAGACTACAGAGTACAGAGT | 59.669 | 47.826 | 0.00 | 0.00 | 35.45 | 3.24 |
2677 | 5115 | 4.535294 | ACCCAGACTACAGAGTACAGAGTA | 59.465 | 45.833 | 0.00 | 0.00 | 35.45 | 2.59 |
2678 | 5116 | 5.120399 | CCCAGACTACAGAGTACAGAGTAG | 58.880 | 50.000 | 13.67 | 13.67 | 39.75 | 2.57 |
2679 | 5117 | 5.338544 | CCCAGACTACAGAGTACAGAGTAGT | 60.339 | 48.000 | 18.28 | 18.28 | 46.99 | 2.73 |
2707 | 5145 | 3.181440 | TGCATCTCCAACAGGAAAGAAGT | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
2710 | 5148 | 2.777692 | TCTCCAACAGGAAAGAAGTGGT | 59.222 | 45.455 | 0.00 | 0.00 | 0.00 | 4.16 |
2711 | 5149 | 3.142174 | CTCCAACAGGAAAGAAGTGGTC | 58.858 | 50.000 | 0.00 | 0.00 | 0.00 | 4.02 |
3034 | 5477 | 0.392706 | CTGCCACCACGCCAGATATA | 59.607 | 55.000 | 0.00 | 0.00 | 0.00 | 0.86 |
3036 | 5479 | 1.419762 | TGCCACCACGCCAGATATAAT | 59.580 | 47.619 | 0.00 | 0.00 | 0.00 | 1.28 |
3037 | 5480 | 1.806542 | GCCACCACGCCAGATATAATG | 59.193 | 52.381 | 0.00 | 0.00 | 0.00 | 1.90 |
3039 | 5482 | 2.224523 | CCACCACGCCAGATATAATGGT | 60.225 | 50.000 | 7.98 | 0.00 | 41.11 | 3.55 |
3040 | 5483 | 3.476552 | CACCACGCCAGATATAATGGTT | 58.523 | 45.455 | 7.98 | 0.00 | 38.38 | 3.67 |
3041 | 5484 | 3.498397 | CACCACGCCAGATATAATGGTTC | 59.502 | 47.826 | 7.98 | 0.00 | 38.38 | 3.62 |
3042 | 5485 | 3.135712 | ACCACGCCAGATATAATGGTTCA | 59.864 | 43.478 | 7.98 | 0.00 | 37.12 | 3.18 |
3043 | 5486 | 4.133820 | CCACGCCAGATATAATGGTTCAA | 58.866 | 43.478 | 7.98 | 0.00 | 40.17 | 2.69 |
3045 | 5488 | 4.214119 | CACGCCAGATATAATGGTTCAAGG | 59.786 | 45.833 | 7.98 | 0.00 | 40.17 | 3.61 |
3047 | 5490 | 4.729868 | GCCAGATATAATGGTTCAAGGGT | 58.270 | 43.478 | 7.98 | 0.00 | 40.17 | 4.34 |
3048 | 5491 | 5.512404 | CGCCAGATATAATGGTTCAAGGGTA | 60.512 | 44.000 | 7.98 | 0.00 | 40.17 | 3.69 |
3049 | 5492 | 5.705905 | GCCAGATATAATGGTTCAAGGGTAC | 59.294 | 44.000 | 7.98 | 0.00 | 40.17 | 3.34 |
3050 | 5493 | 6.690460 | GCCAGATATAATGGTTCAAGGGTACA | 60.690 | 42.308 | 7.98 | 0.00 | 40.17 | 2.90 |
3051 | 5494 | 6.936900 | CCAGATATAATGGTTCAAGGGTACAG | 59.063 | 42.308 | 0.00 | 0.00 | 32.85 | 2.74 |
3052 | 5495 | 7.420214 | CCAGATATAATGGTTCAAGGGTACAGT | 60.420 | 40.741 | 0.00 | 0.00 | 32.85 | 3.55 |
3053 | 5496 | 8.647796 | CAGATATAATGGTTCAAGGGTACAGTA | 58.352 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
3069 | 5514 | 3.740115 | ACAGTACAAACCAAGCCAGTAG | 58.260 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
3084 | 5529 | 5.928976 | AGCCAGTAGTGAACATAATGCATA | 58.071 | 37.500 | 0.00 | 0.00 | 0.00 | 3.14 |
3162 | 5611 | 2.519780 | ATCCTCGTCGGGAGCCTC | 60.520 | 66.667 | 0.00 | 0.00 | 41.71 | 4.70 |
3276 | 5725 | 2.009681 | TGGAGACAGAGTAAGCACCA | 57.990 | 50.000 | 0.00 | 0.00 | 35.01 | 4.17 |
3285 | 5734 | 1.374505 | GTAAGCACCACCGCCGTAA | 60.375 | 57.895 | 0.00 | 0.00 | 0.00 | 3.18 |
3294 | 5743 | 2.344500 | CCGCCGTAACCAAGGACA | 59.656 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
3524 | 5978 | 4.944619 | ATCGAGCAGATGACCAATCTAA | 57.055 | 40.909 | 0.00 | 0.00 | 44.24 | 2.10 |
3616 | 6079 | 5.499139 | TTTTTCTTTGTCACCAGTAGCAG | 57.501 | 39.130 | 0.00 | 0.00 | 0.00 | 4.24 |
3617 | 6080 | 3.838244 | TTCTTTGTCACCAGTAGCAGT | 57.162 | 42.857 | 0.00 | 0.00 | 0.00 | 4.40 |
3618 | 6081 | 4.948341 | TTCTTTGTCACCAGTAGCAGTA | 57.052 | 40.909 | 0.00 | 0.00 | 0.00 | 2.74 |
3707 | 6170 | 1.840635 | GAAGGATCTACCCAGCTTGGT | 59.159 | 52.381 | 14.83 | 14.83 | 42.62 | 3.67 |
3912 | 6375 | 8.535690 | AAGTAGAGTAACACATAAGCAAAGTC | 57.464 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
3914 | 6377 | 5.865085 | AGAGTAACACATAAGCAAAGTCCA | 58.135 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
4006 | 6472 | 1.665679 | CATGACCATCTTGTACGGTGC | 59.334 | 52.381 | 0.00 | 0.00 | 31.63 | 5.01 |
4037 | 6503 | 1.595311 | TGATGGCCTGGTCTATTGGT | 58.405 | 50.000 | 3.32 | 0.00 | 0.00 | 3.67 |
4076 | 6542 | 3.769300 | AGAAAGTTGGGCTTGAACAAGTT | 59.231 | 39.130 | 14.62 | 0.00 | 40.80 | 2.66 |
4199 | 6671 | 1.597742 | TCTTGCAAGACCTTGTCAGC | 58.402 | 50.000 | 25.16 | 2.47 | 42.31 | 4.26 |
4225 | 6697 | 3.454858 | ACACTTATCTCCTGTCATGGGT | 58.545 | 45.455 | 0.00 | 0.00 | 0.00 | 4.51 |
4235 | 6707 | 2.224161 | CCTGTCATGGGTTAGCTAGAGC | 60.224 | 54.545 | 0.00 | 0.00 | 42.49 | 4.09 |
4279 | 6751 | 5.926542 | TGAACAAGTCGAGAATGTTTCTAGG | 59.073 | 40.000 | 10.62 | 0.00 | 40.87 | 3.02 |
4285 | 6759 | 5.479375 | AGTCGAGAATGTTTCTAGGTGGTTA | 59.521 | 40.000 | 0.00 | 0.00 | 40.87 | 2.85 |
4298 | 6781 | 1.653151 | GTGGTTAGCTGATTCGGGAC | 58.347 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4387 | 6870 | 6.464530 | ACATAACTTCTCCTTTTACCCCTT | 57.535 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
4395 | 6903 | 5.074804 | TCTCCTTTTACCCCTTTTAGTTGC | 58.925 | 41.667 | 0.00 | 0.00 | 0.00 | 4.17 |
4418 | 6926 | 0.744057 | GAGCTGCTCCTGGCTTCTTC | 60.744 | 60.000 | 18.80 | 0.00 | 42.39 | 2.87 |
4463 | 6976 | 4.247258 | CCGCACATACCTACACTGTTTTA | 58.753 | 43.478 | 0.00 | 0.00 | 0.00 | 1.52 |
4465 | 6978 | 5.006358 | CCGCACATACCTACACTGTTTTATC | 59.994 | 44.000 | 0.00 | 0.00 | 0.00 | 1.75 |
4483 | 6996 | 8.592155 | TGTTTTATCAGAAGACGAATATTCACG | 58.408 | 33.333 | 15.57 | 5.69 | 0.00 | 4.35 |
4514 | 7027 | 3.689161 | TCGCCTGGAACAATGTGATTAAG | 59.311 | 43.478 | 0.00 | 0.00 | 38.70 | 1.85 |
4515 | 7028 | 3.689161 | CGCCTGGAACAATGTGATTAAGA | 59.311 | 43.478 | 0.00 | 0.00 | 38.70 | 2.10 |
4516 | 7029 | 4.201851 | CGCCTGGAACAATGTGATTAAGAG | 60.202 | 45.833 | 0.00 | 0.00 | 38.70 | 2.85 |
4517 | 7030 | 4.439289 | GCCTGGAACAATGTGATTAAGAGC | 60.439 | 45.833 | 0.00 | 0.00 | 38.70 | 4.09 |
4518 | 7031 | 4.701651 | CCTGGAACAATGTGATTAAGAGCA | 59.298 | 41.667 | 0.00 | 0.00 | 38.70 | 4.26 |
4519 | 7032 | 5.359009 | CCTGGAACAATGTGATTAAGAGCAT | 59.641 | 40.000 | 0.00 | 0.00 | 38.70 | 3.79 |
4520 | 7033 | 6.441093 | TGGAACAATGTGATTAAGAGCATC | 57.559 | 37.500 | 0.00 | 0.00 | 31.92 | 3.91 |
4521 | 7034 | 5.357878 | TGGAACAATGTGATTAAGAGCATCC | 59.642 | 40.000 | 0.00 | 0.00 | 29.61 | 3.51 |
4522 | 7035 | 5.221126 | GGAACAATGTGATTAAGAGCATCCC | 60.221 | 44.000 | 0.00 | 0.00 | 33.66 | 3.85 |
4523 | 7036 | 4.210331 | ACAATGTGATTAAGAGCATCCCC | 58.790 | 43.478 | 0.00 | 0.00 | 33.66 | 4.81 |
4524 | 7037 | 4.209538 | CAATGTGATTAAGAGCATCCCCA | 58.790 | 43.478 | 0.00 | 0.00 | 33.66 | 4.96 |
4525 | 7038 | 3.565764 | TGTGATTAAGAGCATCCCCAG | 57.434 | 47.619 | 0.00 | 0.00 | 33.66 | 4.45 |
4526 | 7039 | 2.225467 | GTGATTAAGAGCATCCCCAGC | 58.775 | 52.381 | 0.00 | 0.00 | 33.66 | 4.85 |
4527 | 7040 | 1.143684 | TGATTAAGAGCATCCCCAGCC | 59.856 | 52.381 | 0.00 | 0.00 | 33.66 | 4.85 |
4528 | 7041 | 0.109342 | ATTAAGAGCATCCCCAGCCG | 59.891 | 55.000 | 0.00 | 0.00 | 33.66 | 5.52 |
4529 | 7042 | 1.271840 | TTAAGAGCATCCCCAGCCGT | 61.272 | 55.000 | 0.00 | 0.00 | 33.66 | 5.68 |
4530 | 7043 | 1.271840 | TAAGAGCATCCCCAGCCGTT | 61.272 | 55.000 | 0.00 | 0.00 | 33.66 | 4.44 |
4531 | 7044 | 2.514824 | GAGCATCCCCAGCCGTTC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
4532 | 7045 | 4.473520 | AGCATCCCCAGCCGTTCG | 62.474 | 66.667 | 0.00 | 0.00 | 0.00 | 3.95 |
4550 | 7063 | 3.361977 | GCCCAAGAGCGCCGAAAA | 61.362 | 61.111 | 2.29 | 0.00 | 0.00 | 2.29 |
4551 | 7064 | 2.914908 | GCCCAAGAGCGCCGAAAAA | 61.915 | 57.895 | 2.29 | 0.00 | 0.00 | 1.94 |
4552 | 7065 | 1.210155 | CCCAAGAGCGCCGAAAAAG | 59.790 | 57.895 | 2.29 | 0.00 | 0.00 | 2.27 |
4553 | 7066 | 1.234615 | CCCAAGAGCGCCGAAAAAGA | 61.235 | 55.000 | 2.29 | 0.00 | 0.00 | 2.52 |
4554 | 7067 | 0.166814 | CCAAGAGCGCCGAAAAAGAG | 59.833 | 55.000 | 2.29 | 0.00 | 0.00 | 2.85 |
4555 | 7068 | 0.453449 | CAAGAGCGCCGAAAAAGAGC | 60.453 | 55.000 | 2.29 | 0.00 | 0.00 | 4.09 |
4559 | 7072 | 4.460873 | CGCCGAAAAAGAGCGCCC | 62.461 | 66.667 | 2.29 | 0.00 | 43.72 | 6.13 |
4560 | 7073 | 3.056328 | GCCGAAAAAGAGCGCCCT | 61.056 | 61.111 | 2.29 | 0.00 | 0.00 | 5.19 |
4561 | 7074 | 2.870372 | CCGAAAAAGAGCGCCCTG | 59.130 | 61.111 | 2.29 | 0.00 | 0.00 | 4.45 |
4562 | 7075 | 2.690778 | CCGAAAAAGAGCGCCCTGG | 61.691 | 63.158 | 2.29 | 0.00 | 0.00 | 4.45 |
4563 | 7076 | 2.690778 | CGAAAAAGAGCGCCCTGGG | 61.691 | 63.158 | 8.86 | 8.86 | 0.00 | 4.45 |
4564 | 7077 | 2.283173 | AAAAAGAGCGCCCTGGGG | 60.283 | 61.111 | 16.03 | 4.75 | 38.57 | 4.96 |
4579 | 7092 | 3.857038 | GGGGTGAGCCGGCGATAA | 61.857 | 66.667 | 23.20 | 4.88 | 34.97 | 1.75 |
4580 | 7093 | 2.188469 | GGGTGAGCCGGCGATAAA | 59.812 | 61.111 | 23.20 | 2.78 | 34.97 | 1.40 |
4581 | 7094 | 1.227853 | GGGTGAGCCGGCGATAAAT | 60.228 | 57.895 | 23.20 | 0.68 | 34.97 | 1.40 |
4582 | 7095 | 0.818040 | GGGTGAGCCGGCGATAAATT | 60.818 | 55.000 | 23.20 | 0.00 | 34.97 | 1.82 |
4583 | 7096 | 0.586802 | GGTGAGCCGGCGATAAATTC | 59.413 | 55.000 | 23.20 | 12.00 | 0.00 | 2.17 |
4927 | 7440 | 3.916359 | TGTTCGGCCTAATTATGTCCA | 57.084 | 42.857 | 0.00 | 0.00 | 0.00 | 4.02 |
4928 | 7441 | 4.223556 | TGTTCGGCCTAATTATGTCCAA | 57.776 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
4931 | 7444 | 5.477291 | TGTTCGGCCTAATTATGTCCAAAAA | 59.523 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
4934 | 7447 | 4.095185 | CGGCCTAATTATGTCCAAAAACGA | 59.905 | 41.667 | 0.00 | 0.00 | 0.00 | 3.85 |
4937 | 7450 | 5.565695 | CCTAATTATGTCCAAAAACGACCG | 58.434 | 41.667 | 0.00 | 0.00 | 0.00 | 4.79 |
4953 | 7466 | 4.554163 | CGATATTCGGAGCGGGTC | 57.446 | 61.111 | 0.00 | 0.00 | 36.00 | 4.46 |
4954 | 7467 | 1.442184 | CGATATTCGGAGCGGGTCG | 60.442 | 63.158 | 0.53 | 0.00 | 36.00 | 4.79 |
4955 | 7468 | 1.080705 | GATATTCGGAGCGGGTCGG | 60.081 | 63.158 | 8.28 | 8.28 | 0.00 | 4.79 |
4956 | 7469 | 3.222354 | ATATTCGGAGCGGGTCGGC | 62.222 | 63.158 | 9.58 | 0.00 | 0.00 | 5.54 |
4961 | 7474 | 4.778143 | GGAGCGGGTCGGCATGTT | 62.778 | 66.667 | 0.53 | 0.00 | 34.64 | 2.71 |
4962 | 7475 | 2.746277 | GAGCGGGTCGGCATGTTT | 60.746 | 61.111 | 0.00 | 0.00 | 34.64 | 2.83 |
4963 | 7476 | 2.282180 | AGCGGGTCGGCATGTTTT | 60.282 | 55.556 | 0.00 | 0.00 | 34.64 | 2.43 |
4964 | 7477 | 2.126502 | GCGGGTCGGCATGTTTTG | 60.127 | 61.111 | 0.00 | 0.00 | 0.00 | 2.44 |
4965 | 7478 | 2.566010 | CGGGTCGGCATGTTTTGG | 59.434 | 61.111 | 0.00 | 0.00 | 0.00 | 3.28 |
4966 | 7479 | 2.265182 | CGGGTCGGCATGTTTTGGT | 61.265 | 57.895 | 0.00 | 0.00 | 0.00 | 3.67 |
4967 | 7480 | 1.584495 | GGGTCGGCATGTTTTGGTC | 59.416 | 57.895 | 0.00 | 0.00 | 0.00 | 4.02 |
4968 | 7481 | 0.893727 | GGGTCGGCATGTTTTGGTCT | 60.894 | 55.000 | 0.00 | 0.00 | 0.00 | 3.85 |
4969 | 7482 | 0.240945 | GGTCGGCATGTTTTGGTCTG | 59.759 | 55.000 | 0.00 | 0.00 | 0.00 | 3.51 |
4970 | 7483 | 1.234821 | GTCGGCATGTTTTGGTCTGA | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 3.27 |
4971 | 7484 | 1.606668 | GTCGGCATGTTTTGGTCTGAA | 59.393 | 47.619 | 0.00 | 0.00 | 0.00 | 3.02 |
4972 | 7485 | 2.228822 | GTCGGCATGTTTTGGTCTGAAT | 59.771 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
4973 | 7486 | 2.890311 | TCGGCATGTTTTGGTCTGAATT | 59.110 | 40.909 | 0.00 | 0.00 | 0.00 | 2.17 |
4974 | 7487 | 3.320541 | TCGGCATGTTTTGGTCTGAATTT | 59.679 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
4975 | 7488 | 4.057432 | CGGCATGTTTTGGTCTGAATTTT | 58.943 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
4976 | 7489 | 4.150451 | CGGCATGTTTTGGTCTGAATTTTC | 59.850 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
4977 | 7490 | 4.150451 | GGCATGTTTTGGTCTGAATTTTCG | 59.850 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
4978 | 7491 | 4.376311 | GCATGTTTTGGTCTGAATTTTCGC | 60.376 | 41.667 | 0.00 | 0.00 | 0.00 | 4.70 |
4979 | 7492 | 4.377839 | TGTTTTGGTCTGAATTTTCGCA | 57.622 | 36.364 | 0.00 | 0.00 | 0.00 | 5.10 |
4980 | 7493 | 4.942852 | TGTTTTGGTCTGAATTTTCGCAT | 58.057 | 34.783 | 0.00 | 0.00 | 0.00 | 4.73 |
4981 | 7494 | 6.078202 | TGTTTTGGTCTGAATTTTCGCATA | 57.922 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
4982 | 7495 | 5.918011 | TGTTTTGGTCTGAATTTTCGCATAC | 59.082 | 36.000 | 0.00 | 0.00 | 0.00 | 2.39 |
4983 | 7496 | 5.697473 | TTTGGTCTGAATTTTCGCATACA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 2.29 |
4984 | 7497 | 5.697473 | TTGGTCTGAATTTTCGCATACAA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 2.41 |
4985 | 7498 | 5.697473 | TGGTCTGAATTTTCGCATACAAA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 2.83 |
4986 | 7499 | 6.266168 | TGGTCTGAATTTTCGCATACAAAT | 57.734 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
4987 | 7500 | 7.384439 | TGGTCTGAATTTTCGCATACAAATA | 57.616 | 32.000 | 0.00 | 0.00 | 0.00 | 1.40 |
4988 | 7501 | 7.247728 | TGGTCTGAATTTTCGCATACAAATAC | 58.752 | 34.615 | 0.00 | 0.00 | 0.00 | 1.89 |
4989 | 7502 | 7.094592 | TGGTCTGAATTTTCGCATACAAATACA | 60.095 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4990 | 7503 | 7.218204 | GGTCTGAATTTTCGCATACAAATACAC | 59.782 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
4991 | 7504 | 7.748683 | GTCTGAATTTTCGCATACAAATACACA | 59.251 | 33.333 | 0.00 | 0.00 | 0.00 | 3.72 |
4992 | 7505 | 8.458052 | TCTGAATTTTCGCATACAAATACACAT | 58.542 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
4993 | 7506 | 9.715123 | CTGAATTTTCGCATACAAATACACATA | 57.285 | 29.630 | 0.00 | 0.00 | 0.00 | 2.29 |
4994 | 7507 | 9.715123 | TGAATTTTCGCATACAAATACACATAG | 57.285 | 29.630 | 0.00 | 0.00 | 0.00 | 2.23 |
4995 | 7508 | 9.716507 | GAATTTTCGCATACAAATACACATAGT | 57.283 | 29.630 | 0.00 | 0.00 | 0.00 | 2.12 |
4997 | 7510 | 9.716507 | ATTTTCGCATACAAATACACATAGTTC | 57.283 | 29.630 | 0.00 | 0.00 | 0.00 | 3.01 |
4998 | 7511 | 6.505039 | TCGCATACAAATACACATAGTTCG | 57.495 | 37.500 | 0.00 | 0.00 | 0.00 | 3.95 |
4999 | 7512 | 5.460748 | TCGCATACAAATACACATAGTTCGG | 59.539 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
5000 | 7513 | 5.440685 | GCATACAAATACACATAGTTCGGC | 58.559 | 41.667 | 0.00 | 0.00 | 0.00 | 5.54 |
5001 | 7514 | 5.007234 | GCATACAAATACACATAGTTCGGCA | 59.993 | 40.000 | 0.00 | 0.00 | 0.00 | 5.69 |
5002 | 7515 | 6.293407 | GCATACAAATACACATAGTTCGGCAT | 60.293 | 38.462 | 0.00 | 0.00 | 0.00 | 4.40 |
5047 | 7597 | 9.497030 | GTGAATTTTCGCATACAAATACACATA | 57.503 | 29.630 | 0.00 | 0.00 | 37.62 | 2.29 |
5064 | 7614 | 5.463286 | ACACATAGTTCGACGTGTTTCATA | 58.537 | 37.500 | 0.00 | 0.00 | 39.49 | 2.15 |
5214 | 7830 | 1.126948 | TGATGCACCTGTGGGTCTCA | 61.127 | 55.000 | 0.00 | 0.00 | 45.41 | 3.27 |
5276 | 7893 | 2.027192 | GGTAGCTGGTGATCAACTTGGA | 60.027 | 50.000 | 12.94 | 0.00 | 0.00 | 3.53 |
5291 | 7908 | 1.059584 | TTGGACAAGAGGACCCTGCA | 61.060 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
5292 | 7909 | 1.059584 | TGGACAAGAGGACCCTGCAA | 61.060 | 55.000 | 0.00 | 0.00 | 0.00 | 4.08 |
5369 | 7986 | 2.022934 | TGTGCAAGATGACACAGCAAA | 58.977 | 42.857 | 0.00 | 0.00 | 41.67 | 3.68 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
28 | 29 | 7.961326 | ATTGTTTGATTTCTATGTTAGGGCT | 57.039 | 32.000 | 0.00 | 0.00 | 0.00 | 5.19 |
29 | 30 | 9.516314 | GTTATTGTTTGATTTCTATGTTAGGGC | 57.484 | 33.333 | 0.00 | 0.00 | 0.00 | 5.19 |
46 | 47 | 4.817286 | TGTTGGGGTTAGGGTTATTGTTT | 58.183 | 39.130 | 0.00 | 0.00 | 0.00 | 2.83 |
101 | 102 | 6.571731 | GCATTTTGTTAGGGTTAGGGTTCTTC | 60.572 | 42.308 | 0.00 | 0.00 | 0.00 | 2.87 |
153 | 155 | 6.805271 | GCAATGTGTATGGAAATATGAGATGC | 59.195 | 38.462 | 0.00 | 0.00 | 0.00 | 3.91 |
214 | 216 | 2.879756 | GCCCACATTTGCTCCAGTCTTA | 60.880 | 50.000 | 0.00 | 0.00 | 0.00 | 2.10 |
256 | 259 | 5.147032 | CTCAAGGTAATCTCCTCAGATCCT | 58.853 | 45.833 | 0.00 | 0.00 | 38.55 | 3.24 |
262 | 265 | 3.631087 | CCTCCCTCAAGGTAATCTCCTCA | 60.631 | 52.174 | 0.00 | 0.00 | 36.74 | 3.86 |
290 | 294 | 3.004315 | GCTTTCTTTGTGGATTTCGACCA | 59.996 | 43.478 | 0.00 | 0.00 | 34.84 | 4.02 |
350 | 354 | 3.196685 | CCGATGTTTCCTTTCTCTCTCCT | 59.803 | 47.826 | 0.00 | 0.00 | 0.00 | 3.69 |
360 | 364 | 0.039618 | ATGCCACCCGATGTTTCCTT | 59.960 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
361 | 365 | 0.394352 | GATGCCACCCGATGTTTCCT | 60.394 | 55.000 | 0.00 | 0.00 | 0.00 | 3.36 |
369 | 377 | 0.904865 | AACAGAGAGATGCCACCCGA | 60.905 | 55.000 | 0.00 | 0.00 | 0.00 | 5.14 |
374 | 382 | 2.897436 | CATTCGAACAGAGAGATGCCA | 58.103 | 47.619 | 0.00 | 0.00 | 0.00 | 4.92 |
376 | 384 | 2.539274 | GAGCATTCGAACAGAGAGATGC | 59.461 | 50.000 | 0.00 | 3.76 | 0.00 | 3.91 |
485 | 493 | 0.315568 | CGGACCAGCTCATAGGTAGC | 59.684 | 60.000 | 0.00 | 0.00 | 38.50 | 3.58 |
501 | 521 | 2.624029 | CCTACCCCTGGTTAAGTACGGA | 60.624 | 54.545 | 0.00 | 0.00 | 37.09 | 4.69 |
503 | 523 | 1.758862 | CCCTACCCCTGGTTAAGTACG | 59.241 | 57.143 | 0.00 | 0.00 | 37.09 | 3.67 |
567 | 587 | 5.706447 | ACTACATAGAGCCCATCTAACAGA | 58.294 | 41.667 | 0.00 | 0.00 | 43.75 | 3.41 |
572 | 592 | 7.929959 | ACACTATACTACATAGAGCCCATCTA | 58.070 | 38.462 | 0.00 | 0.00 | 44.65 | 1.98 |
581 | 601 | 4.628766 | CGGCGCTACACTATACTACATAGA | 59.371 | 45.833 | 7.64 | 0.00 | 0.00 | 1.98 |
587 | 607 | 3.187842 | CACATCGGCGCTACACTATACTA | 59.812 | 47.826 | 7.64 | 0.00 | 0.00 | 1.82 |
616 | 636 | 2.830321 | CCACCTAACTCTTTCGGGTAGT | 59.170 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
628 | 648 | 5.221783 | ACGAAACTATTTCACCCACCTAACT | 60.222 | 40.000 | 0.00 | 0.00 | 39.63 | 2.24 |
634 | 655 | 3.187842 | GTGGACGAAACTATTTCACCCAC | 59.812 | 47.826 | 18.27 | 18.27 | 45.58 | 4.61 |
682 | 703 | 7.168469 | GGCAAAATAGACAAAAATAACACGTGT | 59.832 | 33.333 | 17.22 | 17.22 | 0.00 | 4.49 |
684 | 705 | 6.643360 | GGGCAAAATAGACAAAAATAACACGT | 59.357 | 34.615 | 0.00 | 0.00 | 0.00 | 4.49 |
687 | 708 | 7.309770 | AGGGGCAAAATAGACAAAAATAACA | 57.690 | 32.000 | 0.00 | 0.00 | 0.00 | 2.41 |
700 | 721 | 1.919654 | TCCAGCAGTAGGGGCAAAATA | 59.080 | 47.619 | 0.00 | 0.00 | 0.00 | 1.40 |
735 | 778 | 3.735251 | GACGGACCGGGGAGAGGAT | 62.735 | 68.421 | 20.00 | 0.00 | 0.00 | 3.24 |
736 | 779 | 4.437587 | GACGGACCGGGGAGAGGA | 62.438 | 72.222 | 20.00 | 0.00 | 0.00 | 3.71 |
782 | 829 | 0.038892 | GTCTCGACCTTTGCACCGTA | 60.039 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
860 | 3221 | 1.600413 | CGGAAAAGCTGAAGTTGTGGC | 60.600 | 52.381 | 0.00 | 0.00 | 0.00 | 5.01 |
866 | 3227 | 1.230324 | GTCTGCGGAAAAGCTGAAGT | 58.770 | 50.000 | 0.00 | 0.00 | 44.51 | 3.01 |
921 | 3282 | 1.542375 | ACTGGACTGGCCCCTGAAT | 60.542 | 57.895 | 0.00 | 0.00 | 34.97 | 2.57 |
922 | 3283 | 2.121963 | ACTGGACTGGCCCCTGAA | 60.122 | 61.111 | 0.00 | 0.00 | 34.97 | 3.02 |
923 | 3284 | 2.770868 | ATCACTGGACTGGCCCCTGA | 62.771 | 60.000 | 0.00 | 0.00 | 34.97 | 3.86 |
924 | 3285 | 2.304056 | ATCACTGGACTGGCCCCTG | 61.304 | 63.158 | 0.00 | 0.38 | 34.97 | 4.45 |
925 | 3286 | 2.125912 | ATCACTGGACTGGCCCCT | 59.874 | 61.111 | 0.00 | 0.00 | 34.97 | 4.79 |
926 | 3287 | 2.262774 | CTCATCACTGGACTGGCCCC | 62.263 | 65.000 | 0.00 | 0.00 | 34.97 | 5.80 |
927 | 3288 | 1.222936 | CTCATCACTGGACTGGCCC | 59.777 | 63.158 | 0.00 | 0.00 | 34.97 | 5.80 |
928 | 3289 | 0.107945 | GTCTCATCACTGGACTGGCC | 60.108 | 60.000 | 0.00 | 0.00 | 37.10 | 5.36 |
929 | 3290 | 0.459237 | CGTCTCATCACTGGACTGGC | 60.459 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
930 | 3291 | 1.177401 | TCGTCTCATCACTGGACTGG | 58.823 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
931 | 3292 | 3.516981 | ATTCGTCTCATCACTGGACTG | 57.483 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
932 | 3293 | 5.241949 | GGTATATTCGTCTCATCACTGGACT | 59.758 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
933 | 3294 | 5.009710 | TGGTATATTCGTCTCATCACTGGAC | 59.990 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
947 | 3308 | 3.254903 | TCGATCTGGTGGTGGTATATTCG | 59.745 | 47.826 | 0.00 | 0.00 | 0.00 | 3.34 |
993 | 3354 | 0.466922 | GCTATGGCTGGCTTGATGGT | 60.467 | 55.000 | 2.00 | 0.00 | 35.22 | 3.55 |
1085 | 3446 | 3.118223 | GCAGCTAAGGTTTCTGGATAGGT | 60.118 | 47.826 | 0.00 | 0.00 | 0.00 | 3.08 |
1183 | 3544 | 1.457643 | CATCTCCTACCTCCGGGCA | 60.458 | 63.158 | 0.00 | 0.00 | 35.63 | 5.36 |
1255 | 3616 | 2.762459 | TCTATTCGCCCCGCCACT | 60.762 | 61.111 | 0.00 | 0.00 | 0.00 | 4.00 |
1269 | 3630 | 1.152735 | CCCAGCTACGCTCCCTCTA | 60.153 | 63.158 | 0.00 | 0.00 | 36.40 | 2.43 |
1287 | 3648 | 2.511600 | ACTATGAGCGCAACGGCC | 60.512 | 61.111 | 11.47 | 0.00 | 36.38 | 6.13 |
1381 | 3742 | 2.566952 | AAAATTCTGTATGCGGCAGC | 57.433 | 45.000 | 9.25 | 0.31 | 45.41 | 5.25 |
1383 | 3744 | 2.353269 | CGGTAAAATTCTGTATGCGGCA | 59.647 | 45.455 | 4.58 | 4.58 | 0.00 | 5.69 |
1414 | 3779 | 2.353607 | CGCCGTAGATCTCACGCC | 60.354 | 66.667 | 15.13 | 7.19 | 38.07 | 5.68 |
1472 | 3837 | 7.523293 | TTTGGACATTTCATTCAGTACACAT | 57.477 | 32.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1493 | 3858 | 6.642131 | GCATGTGTGGGCAGTATAATAATTTG | 59.358 | 38.462 | 0.00 | 0.00 | 0.00 | 2.32 |
1728 | 4124 | 1.531739 | TTGATCCCGCCAGCCAAAAC | 61.532 | 55.000 | 0.00 | 0.00 | 0.00 | 2.43 |
1730 | 4126 | 1.000233 | ATTGATCCCGCCAGCCAAA | 60.000 | 52.632 | 0.00 | 0.00 | 0.00 | 3.28 |
1883 | 4287 | 7.603963 | TTTACTGCTAATTACTCGATGCAAA | 57.396 | 32.000 | 0.00 | 0.00 | 0.00 | 3.68 |
1886 | 4290 | 5.234329 | TGCTTTACTGCTAATTACTCGATGC | 59.766 | 40.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1942 | 4365 | 6.448006 | CGCAGTAGTAGCATTATTAAGGTCT | 58.552 | 40.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1944 | 4367 | 5.539048 | CCGCAGTAGTAGCATTATTAAGGT | 58.461 | 41.667 | 0.00 | 0.00 | 0.00 | 3.50 |
1998 | 4421 | 1.379443 | CCAGCAGACCACCATGCAT | 60.379 | 57.895 | 0.00 | 0.00 | 45.01 | 3.96 |
2102 | 4525 | 1.345422 | TGGATATCACCTCCAGGCCTT | 60.345 | 52.381 | 0.00 | 0.00 | 37.87 | 4.35 |
2334 | 4757 | 1.391157 | GCACTTGGTTCACTTGGGCA | 61.391 | 55.000 | 0.00 | 0.00 | 0.00 | 5.36 |
2355 | 4778 | 7.839705 | AGAACAGTACCTATCATGAAGAAGGTA | 59.160 | 37.037 | 21.98 | 21.98 | 38.17 | 3.08 |
2441 | 4870 | 3.669122 | GTGACAACTCACATACTGACGAC | 59.331 | 47.826 | 0.00 | 0.00 | 45.57 | 4.34 |
2442 | 4871 | 3.897325 | GTGACAACTCACATACTGACGA | 58.103 | 45.455 | 0.00 | 0.00 | 45.57 | 4.20 |
2492 | 4921 | 9.902684 | TCTTAGAACTACTACTAATACAGTGCT | 57.097 | 33.333 | 0.00 | 0.00 | 38.24 | 4.40 |
2497 | 4926 | 9.890629 | TCCGTTCTTAGAACTACTACTAATACA | 57.109 | 33.333 | 20.87 | 0.00 | 0.00 | 2.29 |
2501 | 4930 | 9.890629 | TGTATCCGTTCTTAGAACTACTACTAA | 57.109 | 33.333 | 20.87 | 4.47 | 0.00 | 2.24 |
2504 | 4933 | 8.834465 | TGATGTATCCGTTCTTAGAACTACTAC | 58.166 | 37.037 | 20.87 | 17.32 | 0.00 | 2.73 |
2506 | 4935 | 7.556996 | AGTGATGTATCCGTTCTTAGAACTACT | 59.443 | 37.037 | 20.87 | 8.88 | 0.00 | 2.57 |
2512 | 4941 | 7.052248 | TCAGTAGTGATGTATCCGTTCTTAGA | 58.948 | 38.462 | 0.00 | 0.00 | 0.00 | 2.10 |
2519 | 4948 | 5.471797 | CAGATCTCAGTAGTGATGTATCCGT | 59.528 | 44.000 | 0.00 | 0.00 | 30.18 | 4.69 |
2669 | 5107 | 5.357314 | GGAGATGCAGTGTTACTACTCTGTA | 59.643 | 44.000 | 0.00 | 5.30 | 44.08 | 2.74 |
2670 | 5108 | 4.158764 | GGAGATGCAGTGTTACTACTCTGT | 59.841 | 45.833 | 0.00 | 0.00 | 44.08 | 3.41 |
2671 | 5109 | 4.158579 | TGGAGATGCAGTGTTACTACTCTG | 59.841 | 45.833 | 0.00 | 0.00 | 44.69 | 3.35 |
2672 | 5110 | 4.344978 | TGGAGATGCAGTGTTACTACTCT | 58.655 | 43.478 | 0.00 | 0.00 | 0.00 | 3.24 |
2673 | 5111 | 4.720649 | TGGAGATGCAGTGTTACTACTC | 57.279 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
2675 | 5113 | 4.566004 | TGTTGGAGATGCAGTGTTACTAC | 58.434 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
2676 | 5114 | 4.322725 | CCTGTTGGAGATGCAGTGTTACTA | 60.323 | 45.833 | 0.00 | 0.00 | 34.57 | 1.82 |
2677 | 5115 | 3.557898 | CCTGTTGGAGATGCAGTGTTACT | 60.558 | 47.826 | 0.00 | 0.00 | 34.57 | 2.24 |
2678 | 5116 | 2.744202 | CCTGTTGGAGATGCAGTGTTAC | 59.256 | 50.000 | 0.00 | 0.00 | 34.57 | 2.50 |
2679 | 5117 | 2.637382 | TCCTGTTGGAGATGCAGTGTTA | 59.363 | 45.455 | 0.00 | 0.00 | 37.46 | 2.41 |
2707 | 5145 | 6.594159 | GCTATTCTGCTTTTACTACTTGACCA | 59.406 | 38.462 | 0.00 | 0.00 | 0.00 | 4.02 |
2710 | 5148 | 7.545965 | GTCTGCTATTCTGCTTTTACTACTTGA | 59.454 | 37.037 | 0.00 | 0.00 | 0.00 | 3.02 |
2711 | 5149 | 7.331934 | TGTCTGCTATTCTGCTTTTACTACTTG | 59.668 | 37.037 | 0.00 | 0.00 | 0.00 | 3.16 |
2829 | 5268 | 1.000955 | ACCGCAGAGACTTCAATCGTT | 59.999 | 47.619 | 0.00 | 0.00 | 0.00 | 3.85 |
2865 | 5304 | 1.290324 | GTTCGCTGGCAGACTCAGA | 59.710 | 57.895 | 20.86 | 5.85 | 34.36 | 3.27 |
2967 | 5410 | 3.441496 | ACAGTGCATGTGGTTTCTTTG | 57.559 | 42.857 | 0.00 | 0.00 | 41.91 | 2.77 |
3025 | 5468 | 4.729868 | ACCCTTGAACCATTATATCTGGC | 58.270 | 43.478 | 4.52 | 0.00 | 37.27 | 4.85 |
3031 | 5474 | 7.736881 | TGTACTGTACCCTTGAACCATTATA | 57.263 | 36.000 | 14.91 | 0.00 | 0.00 | 0.98 |
3034 | 5477 | 4.986054 | TGTACTGTACCCTTGAACCATT | 57.014 | 40.909 | 14.91 | 0.00 | 0.00 | 3.16 |
3036 | 5479 | 4.453751 | GTTTGTACTGTACCCTTGAACCA | 58.546 | 43.478 | 14.91 | 0.00 | 0.00 | 3.67 |
3037 | 5480 | 3.817084 | GGTTTGTACTGTACCCTTGAACC | 59.183 | 47.826 | 14.91 | 15.01 | 0.00 | 3.62 |
3039 | 5482 | 4.774660 | TGGTTTGTACTGTACCCTTGAA | 57.225 | 40.909 | 14.91 | 0.00 | 0.00 | 2.69 |
3040 | 5483 | 4.710324 | CTTGGTTTGTACTGTACCCTTGA | 58.290 | 43.478 | 14.91 | 0.00 | 0.00 | 3.02 |
3041 | 5484 | 3.252458 | GCTTGGTTTGTACTGTACCCTTG | 59.748 | 47.826 | 14.91 | 7.51 | 0.00 | 3.61 |
3042 | 5485 | 3.483421 | GCTTGGTTTGTACTGTACCCTT | 58.517 | 45.455 | 14.91 | 0.00 | 0.00 | 3.95 |
3043 | 5486 | 2.224695 | GGCTTGGTTTGTACTGTACCCT | 60.225 | 50.000 | 14.91 | 0.00 | 0.00 | 4.34 |
3045 | 5488 | 2.812011 | CTGGCTTGGTTTGTACTGTACC | 59.188 | 50.000 | 14.91 | 3.09 | 0.00 | 3.34 |
3047 | 5490 | 3.849563 | ACTGGCTTGGTTTGTACTGTA | 57.150 | 42.857 | 0.00 | 0.00 | 0.00 | 2.74 |
3048 | 5491 | 2.729028 | ACTGGCTTGGTTTGTACTGT | 57.271 | 45.000 | 0.00 | 0.00 | 0.00 | 3.55 |
3049 | 5492 | 3.498397 | CACTACTGGCTTGGTTTGTACTG | 59.502 | 47.826 | 0.00 | 0.00 | 0.00 | 2.74 |
3050 | 5493 | 3.389983 | TCACTACTGGCTTGGTTTGTACT | 59.610 | 43.478 | 0.00 | 0.00 | 0.00 | 2.73 |
3051 | 5494 | 3.735591 | TCACTACTGGCTTGGTTTGTAC | 58.264 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
3052 | 5495 | 4.131596 | GTTCACTACTGGCTTGGTTTGTA | 58.868 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
3053 | 5496 | 2.949644 | GTTCACTACTGGCTTGGTTTGT | 59.050 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
3069 | 5514 | 4.282068 | CAACCGCTATGCATTATGTTCAC | 58.718 | 43.478 | 3.54 | 0.00 | 0.00 | 3.18 |
3238 | 5687 | 2.182842 | GCATGTCGAGGATGCCCAC | 61.183 | 63.158 | 15.55 | 0.00 | 40.37 | 4.61 |
3240 | 5689 | 1.890979 | CAGCATGTCGAGGATGCCC | 60.891 | 63.158 | 20.59 | 1.25 | 46.24 | 5.36 |
3276 | 5725 | 2.344872 | GTCCTTGGTTACGGCGGT | 59.655 | 61.111 | 13.24 | 1.39 | 0.00 | 5.68 |
3285 | 5734 | 3.307906 | TACGCGCCTGTCCTTGGT | 61.308 | 61.111 | 5.73 | 0.00 | 0.00 | 3.67 |
3294 | 5743 | 2.088674 | GATGGAGGATGTACGCGCCT | 62.089 | 60.000 | 5.73 | 3.30 | 33.97 | 5.52 |
3344 | 5794 | 3.069980 | GCGCGTCATCCAGAGAGGT | 62.070 | 63.158 | 8.43 | 0.00 | 39.02 | 3.85 |
3524 | 5978 | 2.424523 | CGAAGTATACAGAGGAGGGGGT | 60.425 | 54.545 | 5.50 | 0.00 | 0.00 | 4.95 |
3598 | 6061 | 3.258372 | CCTACTGCTACTGGTGACAAAGA | 59.742 | 47.826 | 0.00 | 0.00 | 42.06 | 2.52 |
3601 | 6064 | 2.826128 | CTCCTACTGCTACTGGTGACAA | 59.174 | 50.000 | 0.00 | 0.00 | 42.06 | 3.18 |
3605 | 6068 | 2.166664 | GGTTCTCCTACTGCTACTGGTG | 59.833 | 54.545 | 0.00 | 0.00 | 0.00 | 4.17 |
3607 | 6070 | 2.457598 | TGGTTCTCCTACTGCTACTGG | 58.542 | 52.381 | 0.00 | 0.00 | 34.23 | 4.00 |
3608 | 6071 | 3.957497 | AGATGGTTCTCCTACTGCTACTG | 59.043 | 47.826 | 0.00 | 0.00 | 34.23 | 2.74 |
3610 | 6073 | 3.702045 | ACAGATGGTTCTCCTACTGCTAC | 59.298 | 47.826 | 0.00 | 0.00 | 39.27 | 3.58 |
3612 | 6075 | 2.826488 | ACAGATGGTTCTCCTACTGCT | 58.174 | 47.619 | 0.00 | 0.00 | 39.27 | 4.24 |
3613 | 6076 | 3.618690 | AACAGATGGTTCTCCTACTGC | 57.381 | 47.619 | 0.00 | 0.00 | 39.27 | 4.40 |
3614 | 6077 | 7.118390 | CACTTTTAACAGATGGTTCTCCTACTG | 59.882 | 40.741 | 0.00 | 0.00 | 40.96 | 2.74 |
3615 | 6078 | 7.162082 | CACTTTTAACAGATGGTTCTCCTACT | 58.838 | 38.462 | 0.00 | 0.00 | 40.96 | 2.57 |
3616 | 6079 | 6.128254 | GCACTTTTAACAGATGGTTCTCCTAC | 60.128 | 42.308 | 0.00 | 0.00 | 40.96 | 3.18 |
3617 | 6080 | 5.938125 | GCACTTTTAACAGATGGTTCTCCTA | 59.062 | 40.000 | 0.00 | 0.00 | 40.96 | 2.94 |
3618 | 6081 | 4.762251 | GCACTTTTAACAGATGGTTCTCCT | 59.238 | 41.667 | 0.00 | 0.00 | 40.96 | 3.69 |
3707 | 6170 | 1.070445 | CTTTCCAGCAATGTTGGCCAA | 59.930 | 47.619 | 16.05 | 16.05 | 35.62 | 4.52 |
3765 | 6228 | 2.283145 | GCTATGAGCATGGTTGGGAT | 57.717 | 50.000 | 0.00 | 0.00 | 41.89 | 3.85 |
3944 | 6407 | 2.079925 | GGAAATCAGACGAGCAAGCTT | 58.920 | 47.619 | 0.00 | 0.00 | 0.00 | 3.74 |
4037 | 6503 | 7.148086 | CCAACTTTCTGATCGGATAATTTGGAA | 60.148 | 37.037 | 24.87 | 10.02 | 32.05 | 3.53 |
4076 | 6542 | 2.044650 | GCCCTGGATGCTGCTTCA | 60.045 | 61.111 | 16.12 | 4.33 | 0.00 | 3.02 |
4097 | 6563 | 4.307432 | CGGTGAAGCTCACTCTTTCTTTA | 58.693 | 43.478 | 13.59 | 0.00 | 46.19 | 1.85 |
4199 | 6671 | 6.540189 | CCCATGACAGGAGATAAGTGTTAAAG | 59.460 | 42.308 | 0.00 | 0.00 | 0.00 | 1.85 |
4225 | 6697 | 4.339814 | GCTACTTCTTCCTGCTCTAGCTAA | 59.660 | 45.833 | 3.26 | 0.00 | 42.66 | 3.09 |
4235 | 6707 | 1.634702 | GCACTCGCTACTTCTTCCTG | 58.365 | 55.000 | 0.00 | 0.00 | 34.30 | 3.86 |
4259 | 6731 | 4.627467 | CCACCTAGAAACATTCTCGACTTG | 59.373 | 45.833 | 0.00 | 0.00 | 41.14 | 3.16 |
4279 | 6751 | 1.066430 | TGTCCCGAATCAGCTAACCAC | 60.066 | 52.381 | 0.00 | 0.00 | 0.00 | 4.16 |
4285 | 6759 | 1.561643 | TCTTCTGTCCCGAATCAGCT | 58.438 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
4298 | 6781 | 7.494952 | TCACATGCTGAATCTAAAGATCTTCTG | 59.505 | 37.037 | 8.78 | 4.94 | 32.75 | 3.02 |
4387 | 6870 | 0.250295 | AGCAGCTCCACGCAACTAAA | 60.250 | 50.000 | 0.00 | 0.00 | 42.61 | 1.85 |
4437 | 6945 | 2.104967 | AGTGTAGGTATGTGCGGCTAA | 58.895 | 47.619 | 0.00 | 0.00 | 0.00 | 3.09 |
4451 | 6964 | 7.869016 | TTCGTCTTCTGATAAAACAGTGTAG | 57.131 | 36.000 | 0.00 | 0.00 | 38.79 | 2.74 |
4463 | 6976 | 4.938080 | AGCGTGAATATTCGTCTTCTGAT | 58.062 | 39.130 | 10.80 | 0.00 | 0.00 | 2.90 |
4465 | 6978 | 4.562789 | TCAAGCGTGAATATTCGTCTTCTG | 59.437 | 41.667 | 10.80 | 4.41 | 0.00 | 3.02 |
4483 | 6996 | 1.301716 | TTCCAGGCGACACTCAAGC | 60.302 | 57.895 | 0.00 | 0.00 | 0.00 | 4.01 |
4514 | 7027 | 2.514824 | GAACGGCTGGGGATGCTC | 60.515 | 66.667 | 0.00 | 0.00 | 0.00 | 4.26 |
4515 | 7028 | 4.473520 | CGAACGGCTGGGGATGCT | 62.474 | 66.667 | 0.00 | 0.00 | 0.00 | 3.79 |
4534 | 7047 | 1.210155 | CTTTTTCGGCGCTCTTGGG | 59.790 | 57.895 | 7.64 | 0.00 | 0.00 | 4.12 |
4535 | 7048 | 0.166814 | CTCTTTTTCGGCGCTCTTGG | 59.833 | 55.000 | 7.64 | 0.00 | 0.00 | 3.61 |
4536 | 7049 | 0.453449 | GCTCTTTTTCGGCGCTCTTG | 60.453 | 55.000 | 7.64 | 0.00 | 0.00 | 3.02 |
4537 | 7050 | 1.869690 | GCTCTTTTTCGGCGCTCTT | 59.130 | 52.632 | 7.64 | 0.00 | 0.00 | 2.85 |
4538 | 7051 | 2.383527 | CGCTCTTTTTCGGCGCTCT | 61.384 | 57.895 | 7.64 | 0.00 | 42.28 | 4.09 |
4539 | 7052 | 2.096594 | CGCTCTTTTTCGGCGCTC | 59.903 | 61.111 | 7.64 | 0.00 | 42.28 | 5.03 |
4544 | 7057 | 2.690778 | CCAGGGCGCTCTTTTTCGG | 61.691 | 63.158 | 7.32 | 0.04 | 0.00 | 4.30 |
4545 | 7058 | 2.690778 | CCCAGGGCGCTCTTTTTCG | 61.691 | 63.158 | 7.32 | 0.00 | 0.00 | 3.46 |
4546 | 7059 | 2.343426 | CCCCAGGGCGCTCTTTTTC | 61.343 | 63.158 | 7.32 | 0.00 | 0.00 | 2.29 |
4547 | 7060 | 2.283173 | CCCCAGGGCGCTCTTTTT | 60.283 | 61.111 | 7.32 | 0.00 | 0.00 | 1.94 |
4548 | 7061 | 4.366684 | CCCCCAGGGCGCTCTTTT | 62.367 | 66.667 | 7.32 | 0.00 | 35.35 | 2.27 |
4562 | 7075 | 2.676163 | ATTTATCGCCGGCTCACCCC | 62.676 | 60.000 | 26.68 | 0.00 | 0.00 | 4.95 |
4563 | 7076 | 0.818040 | AATTTATCGCCGGCTCACCC | 60.818 | 55.000 | 26.68 | 0.00 | 0.00 | 4.61 |
4564 | 7077 | 0.586802 | GAATTTATCGCCGGCTCACC | 59.413 | 55.000 | 26.68 | 1.27 | 0.00 | 4.02 |
4565 | 7078 | 0.232303 | CGAATTTATCGCCGGCTCAC | 59.768 | 55.000 | 26.68 | 6.05 | 45.89 | 3.51 |
4566 | 7079 | 2.600388 | CGAATTTATCGCCGGCTCA | 58.400 | 52.632 | 26.68 | 11.65 | 45.89 | 4.26 |
4907 | 7420 | 3.916359 | TGGACATAATTAGGCCGAACA | 57.084 | 42.857 | 0.00 | 0.00 | 0.00 | 3.18 |
4908 | 7421 | 5.570234 | TTTTGGACATAATTAGGCCGAAC | 57.430 | 39.130 | 0.00 | 0.00 | 0.00 | 3.95 |
4909 | 7422 | 5.392165 | CGTTTTTGGACATAATTAGGCCGAA | 60.392 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
4910 | 7423 | 4.095185 | CGTTTTTGGACATAATTAGGCCGA | 59.905 | 41.667 | 0.00 | 0.00 | 0.00 | 5.54 |
4911 | 7424 | 4.095185 | TCGTTTTTGGACATAATTAGGCCG | 59.905 | 41.667 | 0.00 | 0.00 | 0.00 | 6.13 |
4912 | 7425 | 5.337554 | GTCGTTTTTGGACATAATTAGGCC | 58.662 | 41.667 | 0.00 | 0.00 | 34.56 | 5.19 |
4913 | 7426 | 5.337554 | GGTCGTTTTTGGACATAATTAGGC | 58.662 | 41.667 | 0.00 | 0.00 | 36.12 | 3.93 |
4914 | 7427 | 5.352016 | TCGGTCGTTTTTGGACATAATTAGG | 59.648 | 40.000 | 0.00 | 0.00 | 36.12 | 2.69 |
4915 | 7428 | 6.411630 | TCGGTCGTTTTTGGACATAATTAG | 57.588 | 37.500 | 0.00 | 0.00 | 36.12 | 1.73 |
4916 | 7429 | 6.988622 | ATCGGTCGTTTTTGGACATAATTA | 57.011 | 33.333 | 0.00 | 0.00 | 36.12 | 1.40 |
4917 | 7430 | 5.890424 | ATCGGTCGTTTTTGGACATAATT | 57.110 | 34.783 | 0.00 | 0.00 | 36.12 | 1.40 |
4918 | 7431 | 7.517734 | CGAATATCGGTCGTTTTTGGACATAAT | 60.518 | 37.037 | 0.00 | 0.00 | 36.00 | 1.28 |
4919 | 7432 | 6.237888 | CGAATATCGGTCGTTTTTGGACATAA | 60.238 | 38.462 | 0.00 | 0.00 | 36.00 | 1.90 |
4920 | 7433 | 5.232626 | CGAATATCGGTCGTTTTTGGACATA | 59.767 | 40.000 | 0.00 | 0.00 | 36.00 | 2.29 |
4921 | 7434 | 4.033587 | CGAATATCGGTCGTTTTTGGACAT | 59.966 | 41.667 | 0.00 | 0.00 | 36.00 | 3.06 |
4922 | 7435 | 3.368539 | CGAATATCGGTCGTTTTTGGACA | 59.631 | 43.478 | 0.00 | 0.00 | 36.00 | 4.02 |
4923 | 7436 | 3.919827 | CGAATATCGGTCGTTTTTGGAC | 58.080 | 45.455 | 0.00 | 0.00 | 36.00 | 4.02 |
4937 | 7450 | 1.080705 | CCGACCCGCTCCGAATATC | 60.081 | 63.158 | 0.00 | 0.00 | 0.00 | 1.63 |
4946 | 7459 | 2.282180 | AAAACATGCCGACCCGCT | 60.282 | 55.556 | 0.00 | 0.00 | 0.00 | 5.52 |
4949 | 7462 | 0.893727 | AGACCAAAACATGCCGACCC | 60.894 | 55.000 | 0.00 | 0.00 | 0.00 | 4.46 |
4950 | 7463 | 0.240945 | CAGACCAAAACATGCCGACC | 59.759 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4951 | 7464 | 1.234821 | TCAGACCAAAACATGCCGAC | 58.765 | 50.000 | 0.00 | 0.00 | 0.00 | 4.79 |
4952 | 7465 | 1.974265 | TTCAGACCAAAACATGCCGA | 58.026 | 45.000 | 0.00 | 0.00 | 0.00 | 5.54 |
4953 | 7466 | 3.302365 | AATTCAGACCAAAACATGCCG | 57.698 | 42.857 | 0.00 | 0.00 | 0.00 | 5.69 |
4954 | 7467 | 4.150451 | CGAAAATTCAGACCAAAACATGCC | 59.850 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
4955 | 7468 | 4.376311 | GCGAAAATTCAGACCAAAACATGC | 60.376 | 41.667 | 0.00 | 0.00 | 0.00 | 4.06 |
4956 | 7469 | 4.744137 | TGCGAAAATTCAGACCAAAACATG | 59.256 | 37.500 | 0.00 | 0.00 | 0.00 | 3.21 |
4957 | 7470 | 4.942852 | TGCGAAAATTCAGACCAAAACAT | 58.057 | 34.783 | 0.00 | 0.00 | 0.00 | 2.71 |
4958 | 7471 | 4.377839 | TGCGAAAATTCAGACCAAAACA | 57.622 | 36.364 | 0.00 | 0.00 | 0.00 | 2.83 |
4959 | 7472 | 5.918011 | TGTATGCGAAAATTCAGACCAAAAC | 59.082 | 36.000 | 0.00 | 0.00 | 0.00 | 2.43 |
4960 | 7473 | 6.078202 | TGTATGCGAAAATTCAGACCAAAA | 57.922 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
4961 | 7474 | 5.697473 | TGTATGCGAAAATTCAGACCAAA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 3.28 |
4962 | 7475 | 5.697473 | TTGTATGCGAAAATTCAGACCAA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 3.67 |
4963 | 7476 | 5.697473 | TTTGTATGCGAAAATTCAGACCA | 57.303 | 34.783 | 0.00 | 0.00 | 0.00 | 4.02 |
4964 | 7477 | 7.218204 | GTGTATTTGTATGCGAAAATTCAGACC | 59.782 | 37.037 | 0.00 | 0.00 | 0.00 | 3.85 |
4965 | 7478 | 7.748683 | TGTGTATTTGTATGCGAAAATTCAGAC | 59.251 | 33.333 | 0.00 | 0.00 | 0.00 | 3.51 |
4966 | 7479 | 7.811653 | TGTGTATTTGTATGCGAAAATTCAGA | 58.188 | 30.769 | 0.00 | 0.00 | 0.00 | 3.27 |
4967 | 7480 | 8.619146 | ATGTGTATTTGTATGCGAAAATTCAG | 57.381 | 30.769 | 0.00 | 0.00 | 0.00 | 3.02 |
4968 | 7481 | 9.715123 | CTATGTGTATTTGTATGCGAAAATTCA | 57.285 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
4969 | 7482 | 9.716507 | ACTATGTGTATTTGTATGCGAAAATTC | 57.283 | 29.630 | 0.00 | 0.00 | 0.00 | 2.17 |
4971 | 7484 | 9.716507 | GAACTATGTGTATTTGTATGCGAAAAT | 57.283 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
4972 | 7485 | 7.900864 | CGAACTATGTGTATTTGTATGCGAAAA | 59.099 | 33.333 | 0.00 | 0.00 | 0.00 | 2.29 |
4973 | 7486 | 7.395645 | CGAACTATGTGTATTTGTATGCGAAA | 58.604 | 34.615 | 0.00 | 0.00 | 0.00 | 3.46 |
4974 | 7487 | 6.019398 | CCGAACTATGTGTATTTGTATGCGAA | 60.019 | 38.462 | 0.00 | 0.00 | 0.00 | 4.70 |
4975 | 7488 | 5.460748 | CCGAACTATGTGTATTTGTATGCGA | 59.539 | 40.000 | 0.00 | 0.00 | 0.00 | 5.10 |
4976 | 7489 | 5.666203 | CCGAACTATGTGTATTTGTATGCG | 58.334 | 41.667 | 0.00 | 0.00 | 0.00 | 4.73 |
4977 | 7490 | 5.007234 | TGCCGAACTATGTGTATTTGTATGC | 59.993 | 40.000 | 0.00 | 0.00 | 0.00 | 3.14 |
4978 | 7491 | 6.597262 | TGCCGAACTATGTGTATTTGTATG | 57.403 | 37.500 | 0.00 | 0.00 | 0.00 | 2.39 |
4979 | 7492 | 6.204688 | CCATGCCGAACTATGTGTATTTGTAT | 59.795 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
4980 | 7493 | 5.525745 | CCATGCCGAACTATGTGTATTTGTA | 59.474 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
4981 | 7494 | 4.335315 | CCATGCCGAACTATGTGTATTTGT | 59.665 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
4982 | 7495 | 4.335315 | ACCATGCCGAACTATGTGTATTTG | 59.665 | 41.667 | 0.00 | 0.00 | 0.00 | 2.32 |
4983 | 7496 | 4.523083 | ACCATGCCGAACTATGTGTATTT | 58.477 | 39.130 | 0.00 | 0.00 | 0.00 | 1.40 |
4984 | 7497 | 4.150897 | ACCATGCCGAACTATGTGTATT | 57.849 | 40.909 | 0.00 | 0.00 | 0.00 | 1.89 |
4985 | 7498 | 3.838244 | ACCATGCCGAACTATGTGTAT | 57.162 | 42.857 | 0.00 | 0.00 | 0.00 | 2.29 |
4986 | 7499 | 3.527533 | GAACCATGCCGAACTATGTGTA | 58.472 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
4987 | 7500 | 2.356135 | GAACCATGCCGAACTATGTGT | 58.644 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
4988 | 7501 | 1.327460 | CGAACCATGCCGAACTATGTG | 59.673 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
4989 | 7502 | 1.651987 | CGAACCATGCCGAACTATGT | 58.348 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
4990 | 7503 | 0.937304 | CCGAACCATGCCGAACTATG | 59.063 | 55.000 | 2.62 | 0.00 | 0.00 | 2.23 |
4991 | 7504 | 0.814010 | GCCGAACCATGCCGAACTAT | 60.814 | 55.000 | 2.62 | 0.00 | 0.00 | 2.12 |
4992 | 7505 | 1.448893 | GCCGAACCATGCCGAACTA | 60.449 | 57.895 | 2.62 | 0.00 | 0.00 | 2.24 |
4993 | 7506 | 2.746277 | GCCGAACCATGCCGAACT | 60.746 | 61.111 | 2.62 | 0.00 | 0.00 | 3.01 |
4994 | 7507 | 4.160635 | CGCCGAACCATGCCGAAC | 62.161 | 66.667 | 2.62 | 0.00 | 0.00 | 3.95 |
4995 | 7508 | 4.690719 | ACGCCGAACCATGCCGAA | 62.691 | 61.111 | 0.00 | 0.00 | 0.00 | 4.30 |
4998 | 7511 | 2.796245 | GAAACACGCCGAACCATGCC | 62.796 | 60.000 | 0.00 | 0.00 | 0.00 | 4.40 |
4999 | 7512 | 1.442017 | GAAACACGCCGAACCATGC | 60.442 | 57.895 | 0.00 | 0.00 | 0.00 | 4.06 |
5000 | 7513 | 1.154488 | CGAAACACGCCGAACCATG | 60.154 | 57.895 | 0.00 | 0.00 | 34.51 | 3.66 |
5001 | 7514 | 2.322081 | CCGAAACACGCCGAACCAT | 61.322 | 57.895 | 0.00 | 0.00 | 41.07 | 3.55 |
5002 | 7515 | 2.968156 | CCGAAACACGCCGAACCA | 60.968 | 61.111 | 0.00 | 0.00 | 41.07 | 3.67 |
5133 | 7739 | 3.202706 | GCGAGGCCGGAAATGACC | 61.203 | 66.667 | 5.05 | 0.00 | 36.06 | 4.02 |
5214 | 7830 | 3.257873 | CCTCAATATGCGTCAGGAGATCT | 59.742 | 47.826 | 0.00 | 0.00 | 0.00 | 2.75 |
5276 | 7893 | 1.729586 | TACTTGCAGGGTCCTCTTGT | 58.270 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
5291 | 7908 | 7.871853 | GTGTTTGACACTGAACCATATTACTT | 58.128 | 34.615 | 4.06 | 0.00 | 45.27 | 2.24 |
5292 | 7909 | 7.435068 | GTGTTTGACACTGAACCATATTACT | 57.565 | 36.000 | 4.06 | 0.00 | 45.27 | 2.24 |
5369 | 7986 | 6.202202 | AGATCAAATGTGGGAGATCATGAT | 57.798 | 37.500 | 8.25 | 8.25 | 39.39 | 2.45 |
5421 | 8038 | 5.810587 | GTGCTCCAATCTCGATTTACTGTTA | 59.189 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
5427 | 8044 | 3.055458 | TGGTGTGCTCCAATCTCGATTTA | 60.055 | 43.478 | 0.00 | 0.00 | 34.24 | 1.40 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.