Multiple sequence alignment - TraesCS4B01G220600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G220600 chr4B 100.000 5150 0 0 1 5150 463720946 463715797 0.000000e+00 9511.0
1 TraesCS4B01G220600 chr4B 97.222 36 0 1 508 542 197795121 197795156 5.570000e-05 60.2
2 TraesCS4B01G220600 chr4D 97.482 4131 67 15 555 4660 377855397 377851279 0.000000e+00 7018.0
3 TraesCS4B01G220600 chr4D 92.464 491 17 5 4659 5136 377851156 377850673 0.000000e+00 684.0
4 TraesCS4B01G220600 chr4D 86.567 201 23 4 29 227 65055926 65056124 8.680000e-53 219.0
5 TraesCS4B01G220600 chr4D 86.567 201 24 3 29 227 284278444 284278245 8.680000e-53 219.0
6 TraesCS4B01G220600 chr4D 92.000 50 4 0 1138 1187 50458420 50458469 2.570000e-08 71.3
7 TraesCS4B01G220600 chr4A 96.080 4235 85 22 550 4745 87970088 87974280 0.000000e+00 6826.0
8 TraesCS4B01G220600 chr4A 90.840 393 23 2 4750 5129 87974332 87974724 9.890000e-142 514.0
9 TraesCS4B01G220600 chr4A 84.298 242 38 0 232 473 250524204 250523963 2.400000e-58 237.0
10 TraesCS4B01G220600 chr4A 84.979 233 35 0 226 458 615442690 615442922 2.400000e-58 237.0
11 TraesCS4B01G220600 chr4A 92.453 53 3 1 1708 1759 523314318 523314266 1.990000e-09 75.0
12 TraesCS4B01G220600 chr3D 86.555 238 32 0 233 470 105088737 105088974 3.950000e-66 263.0
13 TraesCS4B01G220600 chr3D 86.500 200 25 2 29 227 280410449 280410251 8.680000e-53 219.0
14 TraesCS4B01G220600 chr3D 86.500 200 25 2 29 227 345872866 345872668 8.680000e-53 219.0
15 TraesCS4B01G220600 chr3D 92.308 52 3 1 1709 1759 498761111 498761162 7.150000e-09 73.1
16 TraesCS4B01G220600 chr1A 86.008 243 31 3 229 470 465128508 465128748 1.840000e-64 257.0
17 TraesCS4B01G220600 chr1A 84.519 239 35 2 233 470 555800949 555801186 8.620000e-58 235.0
18 TraesCS4B01G220600 chr1D 85.774 239 33 1 233 470 238457021 238457259 8.560000e-63 252.0
19 TraesCS4B01G220600 chr5B 84.524 252 36 3 222 473 347274296 347274048 3.980000e-61 246.0
20 TraesCS4B01G220600 chr7B 84.874 238 36 0 233 470 413095172 413094935 1.850000e-59 241.0
21 TraesCS4B01G220600 chr7B 87.500 200 23 2 29 227 174560035 174560233 4.010000e-56 230.0
22 TraesCS4B01G220600 chr3B 83.399 253 40 2 226 477 803760999 803760748 3.100000e-57 233.0
23 TraesCS4B01G220600 chr6D 87.500 200 23 2 29 227 200043152 200042954 4.010000e-56 230.0
24 TraesCS4B01G220600 chr2D 87.500 200 23 2 29 227 426471999 426471801 4.010000e-56 230.0
25 TraesCS4B01G220600 chr2D 87.000 200 22 3 29 227 323917936 323917740 6.710000e-54 222.0
26 TraesCS4B01G220600 chr2D 96.491 57 2 0 1708 1764 82376594 82376650 1.530000e-15 95.3
27 TraesCS4B01G220600 chr7D 87.000 200 24 2 29 227 372810184 372809986 1.870000e-54 224.0
28 TraesCS4B01G220600 chr6A 87.912 91 8 1 1708 1798 440809816 440809729 2.540000e-18 104.0
29 TraesCS4B01G220600 chr6A 92.453 53 3 1 1708 1759 204666930 204666982 1.990000e-09 75.0
30 TraesCS4B01G220600 chr5A 89.091 55 3 3 510 561 493396745 493396799 1.200000e-06 65.8
31 TraesCS4B01G220600 chr1B 97.222 36 0 1 508 542 561186871 561186836 5.570000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G220600 chr4B 463715797 463720946 5149 True 9511 9511 100.000 1 5150 1 chr4B.!!$R1 5149
1 TraesCS4B01G220600 chr4D 377850673 377855397 4724 True 3851 7018 94.973 555 5136 2 chr4D.!!$R2 4581
2 TraesCS4B01G220600 chr4A 87970088 87974724 4636 False 3670 6826 93.460 550 5129 2 chr4A.!!$F2 4579

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
401 402 0.108898 TCCCGCCGCAATCAATTTTG 60.109 50.000 0.00 0.0 0.0 2.44 F
402 403 0.389687 CCCGCCGCAATCAATTTTGT 60.390 50.000 0.00 0.0 0.0 2.83 F
1077 1081 1.001503 CTGTGAGGAGGAGGAGGCT 59.998 63.158 0.00 0.0 0.0 4.58 F
1078 1082 1.305633 TGTGAGGAGGAGGAGGCTG 60.306 63.158 0.00 0.0 0.0 4.85 F
2433 2446 2.048603 GGAGGCCATGGTTGAGCAC 61.049 63.158 14.67 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1452 1465 0.460284 CTGAATCTTCCGACGGGGTG 60.460 60.000 15.25 4.73 37.00 4.61 R
1798 1811 1.375652 CAGCAGCTCCACCACTGAG 60.376 63.158 0.00 0.00 35.90 3.35 R
2233 2246 2.104859 CAGCCTCTGCCACGACATG 61.105 63.158 0.00 0.00 38.69 3.21 R
2442 2455 7.066766 AGTGCAGAGAACCATTCATTATCTTTC 59.933 37.037 0.00 0.00 0.00 2.62 R
4185 4198 1.734465 GTAGCTAACTGCAACTGCCAG 59.266 52.381 0.00 0.00 45.94 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.267642 TGCGGTGGGTCAGCATAC 59.732 61.111 0.00 0.00 41.80 2.39
24 25 2.267642 GCGGTGGGTCAGCATACA 59.732 61.111 0.00 0.00 37.22 2.29
25 26 1.815421 GCGGTGGGTCAGCATACAG 60.815 63.158 0.00 0.00 37.22 2.74
26 27 1.897423 CGGTGGGTCAGCATACAGA 59.103 57.895 0.00 0.00 0.00 3.41
27 28 0.249120 CGGTGGGTCAGCATACAGAA 59.751 55.000 0.00 0.00 0.00 3.02
28 29 1.338674 CGGTGGGTCAGCATACAGAAA 60.339 52.381 0.00 0.00 0.00 2.52
29 30 2.790433 GGTGGGTCAGCATACAGAAAA 58.210 47.619 0.00 0.00 0.00 2.29
30 31 2.749621 GGTGGGTCAGCATACAGAAAAG 59.250 50.000 0.00 0.00 0.00 2.27
31 32 2.749621 GTGGGTCAGCATACAGAAAAGG 59.250 50.000 0.00 0.00 0.00 3.11
32 33 2.642311 TGGGTCAGCATACAGAAAAGGA 59.358 45.455 0.00 0.00 0.00 3.36
33 34 3.274288 GGGTCAGCATACAGAAAAGGAG 58.726 50.000 0.00 0.00 0.00 3.69
34 35 3.055094 GGGTCAGCATACAGAAAAGGAGA 60.055 47.826 0.00 0.00 0.00 3.71
35 36 4.187694 GGTCAGCATACAGAAAAGGAGAG 58.812 47.826 0.00 0.00 0.00 3.20
36 37 4.323104 GGTCAGCATACAGAAAAGGAGAGT 60.323 45.833 0.00 0.00 0.00 3.24
37 38 5.241662 GTCAGCATACAGAAAAGGAGAGTT 58.758 41.667 0.00 0.00 0.00 3.01
38 39 6.398918 GTCAGCATACAGAAAAGGAGAGTTA 58.601 40.000 0.00 0.00 0.00 2.24
39 40 6.874134 GTCAGCATACAGAAAAGGAGAGTTAA 59.126 38.462 0.00 0.00 0.00 2.01
40 41 7.064016 GTCAGCATACAGAAAAGGAGAGTTAAG 59.936 40.741 0.00 0.00 0.00 1.85
41 42 7.039011 TCAGCATACAGAAAAGGAGAGTTAAGA 60.039 37.037 0.00 0.00 0.00 2.10
42 43 7.277539 CAGCATACAGAAAAGGAGAGTTAAGAG 59.722 40.741 0.00 0.00 0.00 2.85
43 44 6.036626 GCATACAGAAAAGGAGAGTTAAGAGC 59.963 42.308 0.00 0.00 0.00 4.09
44 45 5.552870 ACAGAAAAGGAGAGTTAAGAGCA 57.447 39.130 0.00 0.00 0.00 4.26
45 46 5.930135 ACAGAAAAGGAGAGTTAAGAGCAA 58.070 37.500 0.00 0.00 0.00 3.91
46 47 5.994668 ACAGAAAAGGAGAGTTAAGAGCAAG 59.005 40.000 0.00 0.00 0.00 4.01
47 48 5.994668 CAGAAAAGGAGAGTTAAGAGCAAGT 59.005 40.000 0.00 0.00 0.00 3.16
48 49 7.155328 CAGAAAAGGAGAGTTAAGAGCAAGTA 58.845 38.462 0.00 0.00 0.00 2.24
49 50 7.117092 CAGAAAAGGAGAGTTAAGAGCAAGTAC 59.883 40.741 0.00 0.00 0.00 2.73
50 51 6.420913 AAAGGAGAGTTAAGAGCAAGTACA 57.579 37.500 0.00 0.00 0.00 2.90
51 52 6.420913 AAGGAGAGTTAAGAGCAAGTACAA 57.579 37.500 0.00 0.00 0.00 2.41
52 53 6.613153 AGGAGAGTTAAGAGCAAGTACAAT 57.387 37.500 0.00 0.00 0.00 2.71
53 54 7.719871 AGGAGAGTTAAGAGCAAGTACAATA 57.280 36.000 0.00 0.00 0.00 1.90
54 55 8.135382 AGGAGAGTTAAGAGCAAGTACAATAA 57.865 34.615 0.00 0.00 0.00 1.40
55 56 8.254508 AGGAGAGTTAAGAGCAAGTACAATAAG 58.745 37.037 0.00 0.00 0.00 1.73
56 57 7.492994 GGAGAGTTAAGAGCAAGTACAATAAGG 59.507 40.741 0.00 0.00 0.00 2.69
57 58 7.908453 AGAGTTAAGAGCAAGTACAATAAGGT 58.092 34.615 0.00 0.00 0.00 3.50
58 59 9.032624 AGAGTTAAGAGCAAGTACAATAAGGTA 57.967 33.333 0.00 0.00 0.00 3.08
59 60 8.999220 AGTTAAGAGCAAGTACAATAAGGTAC 57.001 34.615 0.00 0.00 43.10 3.34
60 61 8.591072 AGTTAAGAGCAAGTACAATAAGGTACA 58.409 33.333 6.29 0.00 44.76 2.90
61 62 8.870879 GTTAAGAGCAAGTACAATAAGGTACAG 58.129 37.037 6.29 0.31 44.76 2.74
62 63 6.607004 AGAGCAAGTACAATAAGGTACAGT 57.393 37.500 6.29 0.00 44.76 3.55
63 64 6.631962 AGAGCAAGTACAATAAGGTACAGTC 58.368 40.000 6.29 0.00 44.76 3.51
64 65 6.210784 AGAGCAAGTACAATAAGGTACAGTCA 59.789 38.462 6.29 0.00 44.76 3.41
65 66 6.398918 AGCAAGTACAATAAGGTACAGTCAG 58.601 40.000 6.29 0.00 44.76 3.51
66 67 5.063564 GCAAGTACAATAAGGTACAGTCAGC 59.936 44.000 6.29 0.01 44.76 4.26
67 68 5.995565 AGTACAATAAGGTACAGTCAGCA 57.004 39.130 6.29 0.00 44.76 4.41
68 69 5.967088 AGTACAATAAGGTACAGTCAGCAG 58.033 41.667 6.29 0.00 44.76 4.24
69 70 4.207891 ACAATAAGGTACAGTCAGCAGG 57.792 45.455 0.00 0.00 0.00 4.85
70 71 2.939103 CAATAAGGTACAGTCAGCAGGC 59.061 50.000 0.00 0.00 0.00 4.85
71 72 1.938585 TAAGGTACAGTCAGCAGGCT 58.061 50.000 0.00 0.00 0.00 4.58
72 73 0.322975 AAGGTACAGTCAGCAGGCTG 59.677 55.000 14.97 14.97 44.86 4.85
73 74 0.833834 AGGTACAGTCAGCAGGCTGT 60.834 55.000 20.61 20.61 46.33 4.40
74 75 0.895530 GGTACAGTCAGCAGGCTGTA 59.104 55.000 18.45 18.45 43.30 2.74
75 76 1.275291 GGTACAGTCAGCAGGCTGTAA 59.725 52.381 23.10 6.98 45.94 2.41
76 77 2.611518 GTACAGTCAGCAGGCTGTAAG 58.388 52.381 23.10 12.88 45.94 2.34
77 78 0.322975 ACAGTCAGCAGGCTGTAAGG 59.677 55.000 15.39 11.06 43.30 2.69
78 79 0.610174 CAGTCAGCAGGCTGTAAGGA 59.390 55.000 19.75 5.94 43.96 3.36
79 80 0.901124 AGTCAGCAGGCTGTAAGGAG 59.099 55.000 19.75 0.35 43.96 3.69
80 81 0.610687 GTCAGCAGGCTGTAAGGAGT 59.389 55.000 19.75 0.00 43.96 3.85
81 82 1.825474 GTCAGCAGGCTGTAAGGAGTA 59.175 52.381 19.75 0.00 43.96 2.59
82 83 2.233922 GTCAGCAGGCTGTAAGGAGTAA 59.766 50.000 19.75 0.00 43.96 2.24
83 84 2.903784 TCAGCAGGCTGTAAGGAGTAAA 59.096 45.455 19.75 0.00 43.96 2.01
84 85 3.055819 TCAGCAGGCTGTAAGGAGTAAAG 60.056 47.826 19.75 0.00 43.96 1.85
85 86 2.907042 AGCAGGCTGTAAGGAGTAAAGT 59.093 45.455 17.16 0.00 0.00 2.66
86 87 4.081642 CAGCAGGCTGTAAGGAGTAAAGTA 60.082 45.833 17.16 0.00 39.10 2.24
87 88 4.530946 AGCAGGCTGTAAGGAGTAAAGTAA 59.469 41.667 17.16 0.00 0.00 2.24
88 89 5.189934 AGCAGGCTGTAAGGAGTAAAGTAAT 59.810 40.000 17.16 0.00 0.00 1.89
89 90 6.383147 AGCAGGCTGTAAGGAGTAAAGTAATA 59.617 38.462 17.16 0.00 0.00 0.98
90 91 7.071321 AGCAGGCTGTAAGGAGTAAAGTAATAT 59.929 37.037 17.16 0.00 0.00 1.28
91 92 7.715686 GCAGGCTGTAAGGAGTAAAGTAATATT 59.284 37.037 17.16 0.00 0.00 1.28
92 93 9.614792 CAGGCTGTAAGGAGTAAAGTAATATTT 57.385 33.333 6.28 0.00 0.00 1.40
93 94 9.614792 AGGCTGTAAGGAGTAAAGTAATATTTG 57.385 33.333 0.00 0.00 0.00 2.32
94 95 9.392259 GGCTGTAAGGAGTAAAGTAATATTTGT 57.608 33.333 0.00 0.00 0.00 2.83
112 113 9.905713 AATATTTGTATGCTTAGTTGAAGGAGA 57.094 29.630 0.00 0.00 39.10 3.71
113 114 9.905713 ATATTTGTATGCTTAGTTGAAGGAGAA 57.094 29.630 0.00 0.00 39.10 2.87
114 115 8.635765 ATTTGTATGCTTAGTTGAAGGAGAAA 57.364 30.769 0.00 0.00 39.10 2.52
115 116 8.458573 TTTGTATGCTTAGTTGAAGGAGAAAA 57.541 30.769 0.00 0.00 39.10 2.29
116 117 7.672983 TGTATGCTTAGTTGAAGGAGAAAAG 57.327 36.000 0.00 0.00 39.10 2.27
117 118 7.450074 TGTATGCTTAGTTGAAGGAGAAAAGA 58.550 34.615 0.00 0.00 39.10 2.52
118 119 8.103305 TGTATGCTTAGTTGAAGGAGAAAAGAT 58.897 33.333 0.00 0.00 39.10 2.40
119 120 9.601217 GTATGCTTAGTTGAAGGAGAAAAGATA 57.399 33.333 0.00 0.00 39.10 1.98
120 121 8.729805 ATGCTTAGTTGAAGGAGAAAAGATAG 57.270 34.615 0.00 0.00 39.10 2.08
121 122 7.106239 TGCTTAGTTGAAGGAGAAAAGATAGG 58.894 38.462 0.00 0.00 35.49 2.57
122 123 7.038302 TGCTTAGTTGAAGGAGAAAAGATAGGA 60.038 37.037 0.00 0.00 35.49 2.94
123 124 7.494298 GCTTAGTTGAAGGAGAAAAGATAGGAG 59.506 40.741 0.00 0.00 35.49 3.69
124 125 8.666129 TTAGTTGAAGGAGAAAAGATAGGAGA 57.334 34.615 0.00 0.00 0.00 3.71
125 126 7.181569 AGTTGAAGGAGAAAAGATAGGAGAG 57.818 40.000 0.00 0.00 0.00 3.20
126 127 6.156083 AGTTGAAGGAGAAAAGATAGGAGAGG 59.844 42.308 0.00 0.00 0.00 3.69
127 128 4.965532 TGAAGGAGAAAAGATAGGAGAGGG 59.034 45.833 0.00 0.00 0.00 4.30
128 129 4.909355 AGGAGAAAAGATAGGAGAGGGA 57.091 45.455 0.00 0.00 0.00 4.20
129 130 5.227917 AGGAGAAAAGATAGGAGAGGGAA 57.772 43.478 0.00 0.00 0.00 3.97
130 131 5.798419 AGGAGAAAAGATAGGAGAGGGAAT 58.202 41.667 0.00 0.00 0.00 3.01
131 132 5.606329 AGGAGAAAAGATAGGAGAGGGAATG 59.394 44.000 0.00 0.00 0.00 2.67
132 133 5.368230 GGAGAAAAGATAGGAGAGGGAATGT 59.632 44.000 0.00 0.00 0.00 2.71
133 134 6.555360 GGAGAAAAGATAGGAGAGGGAATGTA 59.445 42.308 0.00 0.00 0.00 2.29
134 135 7.071321 GGAGAAAAGATAGGAGAGGGAATGTAA 59.929 40.741 0.00 0.00 0.00 2.41
135 136 8.028652 AGAAAAGATAGGAGAGGGAATGTAAG 57.971 38.462 0.00 0.00 0.00 2.34
136 137 5.816955 AAGATAGGAGAGGGAATGTAAGC 57.183 43.478 0.00 0.00 0.00 3.09
137 138 4.820775 AGATAGGAGAGGGAATGTAAGCA 58.179 43.478 0.00 0.00 0.00 3.91
138 139 4.837860 AGATAGGAGAGGGAATGTAAGCAG 59.162 45.833 0.00 0.00 0.00 4.24
139 140 2.122768 AGGAGAGGGAATGTAAGCAGG 58.877 52.381 0.00 0.00 0.00 4.85
140 141 1.475930 GGAGAGGGAATGTAAGCAGGC 60.476 57.143 0.00 0.00 0.00 4.85
141 142 1.488393 GAGAGGGAATGTAAGCAGGCT 59.512 52.381 0.00 0.00 0.00 4.58
142 143 1.488393 AGAGGGAATGTAAGCAGGCTC 59.512 52.381 0.00 0.00 0.00 4.70
143 144 1.488393 GAGGGAATGTAAGCAGGCTCT 59.512 52.381 0.00 0.00 0.00 4.09
144 145 1.488393 AGGGAATGTAAGCAGGCTCTC 59.512 52.381 0.00 0.00 0.00 3.20
145 146 1.210478 GGGAATGTAAGCAGGCTCTCA 59.790 52.381 0.00 0.00 0.00 3.27
146 147 2.158696 GGGAATGTAAGCAGGCTCTCAT 60.159 50.000 0.00 0.04 0.00 2.90
147 148 2.877168 GGAATGTAAGCAGGCTCTCATG 59.123 50.000 10.36 0.00 0.00 3.07
148 149 1.964552 ATGTAAGCAGGCTCTCATGC 58.035 50.000 9.29 0.00 42.87 4.06
149 150 0.614812 TGTAAGCAGGCTCTCATGCA 59.385 50.000 4.77 0.00 45.01 3.96
150 151 1.211212 TGTAAGCAGGCTCTCATGCAT 59.789 47.619 0.00 0.00 45.01 3.96
151 152 1.602851 GTAAGCAGGCTCTCATGCATG 59.397 52.381 21.07 21.07 45.01 4.06
152 153 0.255033 AAGCAGGCTCTCATGCATGA 59.745 50.000 27.10 27.10 46.12 3.07
153 154 0.474614 AGCAGGCTCTCATGCATGAT 59.525 50.000 28.81 11.83 46.12 2.45
154 155 0.875728 GCAGGCTCTCATGCATGATC 59.124 55.000 28.81 19.45 46.12 2.92
155 156 1.524848 CAGGCTCTCATGCATGATCC 58.475 55.000 28.81 26.00 46.12 3.36
156 157 1.137697 AGGCTCTCATGCATGATCCA 58.862 50.000 28.81 15.00 36.02 3.41
157 158 1.072489 AGGCTCTCATGCATGATCCAG 59.928 52.381 28.81 23.13 36.02 3.86
158 159 0.875728 GCTCTCATGCATGATCCAGC 59.124 55.000 28.81 27.62 36.02 4.85
159 160 1.543650 GCTCTCATGCATGATCCAGCT 60.544 52.381 30.23 0.00 36.02 4.24
160 161 2.147150 CTCTCATGCATGATCCAGCTG 58.853 52.381 28.81 15.60 36.02 4.24
161 162 0.593618 CTCATGCATGATCCAGCTGC 59.406 55.000 28.81 0.00 36.02 5.25
163 164 4.747218 TGCATGATCCAGCTGCAA 57.253 50.000 8.66 0.00 42.53 4.08
164 165 2.964343 TGCATGATCCAGCTGCAAA 58.036 47.368 8.66 0.00 42.53 3.68
165 166 1.258676 TGCATGATCCAGCTGCAAAA 58.741 45.000 8.66 0.00 42.53 2.44
166 167 1.067425 TGCATGATCCAGCTGCAAAAC 60.067 47.619 8.66 0.00 42.53 2.43
167 168 1.904144 CATGATCCAGCTGCAAAACG 58.096 50.000 8.66 0.00 0.00 3.60
168 169 1.200716 CATGATCCAGCTGCAAAACGT 59.799 47.619 8.66 0.00 0.00 3.99
169 170 0.592637 TGATCCAGCTGCAAAACGTG 59.407 50.000 8.66 0.00 0.00 4.49
170 171 0.874390 GATCCAGCTGCAAAACGTGA 59.126 50.000 8.66 0.00 0.00 4.35
171 172 1.470098 GATCCAGCTGCAAAACGTGAT 59.530 47.619 8.66 2.63 0.00 3.06
172 173 0.874390 TCCAGCTGCAAAACGTGATC 59.126 50.000 8.66 0.00 0.00 2.92
173 174 0.453282 CCAGCTGCAAAACGTGATCG 60.453 55.000 8.66 0.00 43.34 3.69
192 193 3.071786 CGTAGGCACTATGTGAGAGTG 57.928 52.381 1.52 0.00 45.60 3.51
193 194 2.683362 CGTAGGCACTATGTGAGAGTGA 59.317 50.000 6.96 0.00 46.01 3.41
194 195 3.128764 CGTAGGCACTATGTGAGAGTGAA 59.871 47.826 6.96 0.00 46.01 3.18
195 196 4.380550 CGTAGGCACTATGTGAGAGTGAAA 60.381 45.833 6.96 0.00 46.01 2.69
196 197 4.623932 AGGCACTATGTGAGAGTGAAAA 57.376 40.909 6.96 0.00 46.01 2.29
197 198 4.973168 AGGCACTATGTGAGAGTGAAAAA 58.027 39.130 6.96 0.00 46.01 1.94
198 199 5.564550 AGGCACTATGTGAGAGTGAAAAAT 58.435 37.500 6.96 0.00 46.01 1.82
199 200 6.711277 AGGCACTATGTGAGAGTGAAAAATA 58.289 36.000 6.96 0.00 46.01 1.40
200 201 6.595716 AGGCACTATGTGAGAGTGAAAAATAC 59.404 38.462 6.96 0.00 46.01 1.89
201 202 6.455646 GGCACTATGTGAGAGTGAAAAATACG 60.456 42.308 6.96 0.00 46.01 3.06
202 203 6.090898 GCACTATGTGAGAGTGAAAAATACGT 59.909 38.462 6.96 0.00 46.01 3.57
203 204 7.667283 CACTATGTGAGAGTGAAAAATACGTC 58.333 38.462 0.00 0.00 46.01 4.34
204 205 7.328493 CACTATGTGAGAGTGAAAAATACGTCA 59.672 37.037 0.00 0.00 46.01 4.35
205 206 8.035394 ACTATGTGAGAGTGAAAAATACGTCAT 58.965 33.333 0.00 0.00 0.00 3.06
206 207 6.466308 TGTGAGAGTGAAAAATACGTCATG 57.534 37.500 0.00 0.00 0.00 3.07
207 208 5.107104 TGTGAGAGTGAAAAATACGTCATGC 60.107 40.000 0.00 0.00 0.00 4.06
208 209 4.994217 TGAGAGTGAAAAATACGTCATGCA 59.006 37.500 0.00 0.00 0.00 3.96
209 210 5.643348 TGAGAGTGAAAAATACGTCATGCAT 59.357 36.000 0.00 0.00 0.00 3.96
210 211 6.149308 TGAGAGTGAAAAATACGTCATGCATT 59.851 34.615 0.00 0.00 0.00 3.56
211 212 7.333174 TGAGAGTGAAAAATACGTCATGCATTA 59.667 33.333 0.00 0.00 0.00 1.90
212 213 8.039603 AGAGTGAAAAATACGTCATGCATTAA 57.960 30.769 0.00 0.00 0.00 1.40
213 214 8.677300 AGAGTGAAAAATACGTCATGCATTAAT 58.323 29.630 0.00 0.00 0.00 1.40
214 215 9.929722 GAGTGAAAAATACGTCATGCATTAATA 57.070 29.630 0.00 0.00 0.00 0.98
221 222 9.878599 AAATACGTCATGCATTAATAAAGTAGC 57.121 29.630 0.00 0.00 0.00 3.58
222 223 6.918892 ACGTCATGCATTAATAAAGTAGCA 57.081 33.333 0.00 0.00 36.34 3.49
223 224 6.715464 ACGTCATGCATTAATAAAGTAGCAC 58.285 36.000 0.00 0.00 34.54 4.40
224 225 6.315144 ACGTCATGCATTAATAAAGTAGCACA 59.685 34.615 0.00 0.00 34.54 4.57
225 226 7.012327 ACGTCATGCATTAATAAAGTAGCACAT 59.988 33.333 0.00 0.00 34.54 3.21
226 227 8.495148 CGTCATGCATTAATAAAGTAGCACATA 58.505 33.333 0.00 0.00 34.54 2.29
241 242 5.476091 AGCACATAATAGCTACTTCCTCC 57.524 43.478 0.00 0.00 39.78 4.30
242 243 4.901849 AGCACATAATAGCTACTTCCTCCA 59.098 41.667 0.00 0.00 39.78 3.86
243 244 5.545723 AGCACATAATAGCTACTTCCTCCAT 59.454 40.000 0.00 0.00 39.78 3.41
244 245 6.043706 AGCACATAATAGCTACTTCCTCCATT 59.956 38.462 0.00 0.00 39.78 3.16
245 246 6.370166 GCACATAATAGCTACTTCCTCCATTC 59.630 42.308 0.00 0.00 0.00 2.67
246 247 7.675062 CACATAATAGCTACTTCCTCCATTCT 58.325 38.462 0.00 0.00 0.00 2.40
247 248 8.807118 CACATAATAGCTACTTCCTCCATTCTA 58.193 37.037 0.00 0.00 0.00 2.10
248 249 9.381038 ACATAATAGCTACTTCCTCCATTCTAA 57.619 33.333 0.00 0.00 0.00 2.10
262 263 8.877195 TCCTCCATTCTAAAATATAGTGTACCC 58.123 37.037 0.00 0.00 0.00 3.69
263 264 7.817962 CCTCCATTCTAAAATATAGTGTACCCG 59.182 40.741 0.00 0.00 0.00 5.28
264 265 7.156673 TCCATTCTAAAATATAGTGTACCCGC 58.843 38.462 0.00 0.00 0.00 6.13
265 266 6.090358 CCATTCTAAAATATAGTGTACCCGCG 59.910 42.308 0.00 0.00 0.00 6.46
266 267 4.549458 TCTAAAATATAGTGTACCCGCGC 58.451 43.478 0.00 0.00 0.00 6.86
267 268 3.464111 AAAATATAGTGTACCCGCGCT 57.536 42.857 5.56 0.00 0.00 5.92
268 269 3.464111 AAATATAGTGTACCCGCGCTT 57.536 42.857 5.56 0.00 0.00 4.68
269 270 3.464111 AATATAGTGTACCCGCGCTTT 57.536 42.857 5.56 0.00 0.00 3.51
270 271 2.965572 TATAGTGTACCCGCGCTTTT 57.034 45.000 5.56 0.00 0.00 2.27
271 272 1.648504 ATAGTGTACCCGCGCTTTTC 58.351 50.000 5.56 0.00 0.00 2.29
272 273 0.733566 TAGTGTACCCGCGCTTTTCG 60.734 55.000 5.56 0.00 42.12 3.46
273 274 2.023223 GTGTACCCGCGCTTTTCGA 61.023 57.895 5.56 0.00 41.67 3.71
274 275 1.735198 TGTACCCGCGCTTTTCGAG 60.735 57.895 5.56 0.00 41.67 4.04
279 280 2.736995 CGCGCTTTTCGAGGTCCA 60.737 61.111 5.56 0.00 41.67 4.02
280 281 2.314647 CGCGCTTTTCGAGGTCCAA 61.315 57.895 5.56 0.00 41.67 3.53
281 282 1.635663 CGCGCTTTTCGAGGTCCAAT 61.636 55.000 5.56 0.00 41.67 3.16
282 283 0.521735 GCGCTTTTCGAGGTCCAATT 59.478 50.000 0.00 0.00 41.67 2.32
283 284 1.068541 GCGCTTTTCGAGGTCCAATTT 60.069 47.619 0.00 0.00 41.67 1.82
284 285 2.607038 GCGCTTTTCGAGGTCCAATTTT 60.607 45.455 0.00 0.00 41.67 1.82
285 286 2.979813 CGCTTTTCGAGGTCCAATTTTG 59.020 45.455 0.00 0.00 41.67 2.44
286 287 3.304391 CGCTTTTCGAGGTCCAATTTTGA 60.304 43.478 0.00 0.00 41.67 2.69
287 288 3.981416 GCTTTTCGAGGTCCAATTTTGAC 59.019 43.478 0.00 0.00 0.00 3.18
288 289 4.261614 GCTTTTCGAGGTCCAATTTTGACT 60.262 41.667 5.19 0.00 0.00 3.41
289 290 5.048991 GCTTTTCGAGGTCCAATTTTGACTA 60.049 40.000 5.19 0.00 0.00 2.59
290 291 6.349363 GCTTTTCGAGGTCCAATTTTGACTAT 60.349 38.462 5.19 0.00 0.00 2.12
291 292 7.148306 GCTTTTCGAGGTCCAATTTTGACTATA 60.148 37.037 5.19 0.00 0.00 1.31
292 293 8.624367 TTTTCGAGGTCCAATTTTGACTATAA 57.376 30.769 5.19 0.00 0.00 0.98
293 294 8.624367 TTTCGAGGTCCAATTTTGACTATAAA 57.376 30.769 5.19 0.00 0.00 1.40
294 295 8.801882 TTCGAGGTCCAATTTTGACTATAAAT 57.198 30.769 5.19 0.00 0.00 1.40
295 296 8.801882 TCGAGGTCCAATTTTGACTATAAATT 57.198 30.769 5.19 0.00 36.03 1.82
296 297 9.238368 TCGAGGTCCAATTTTGACTATAAATTT 57.762 29.630 0.00 0.00 34.01 1.82
297 298 9.289303 CGAGGTCCAATTTTGACTATAAATTTG 57.711 33.333 0.00 0.00 34.01 2.32
309 310 9.959749 TTGACTATAAATTTGAACAACAAGACC 57.040 29.630 0.00 0.00 39.77 3.85
310 311 8.573035 TGACTATAAATTTGAACAACAAGACCC 58.427 33.333 0.00 0.00 39.77 4.46
311 312 8.472007 ACTATAAATTTGAACAACAAGACCCA 57.528 30.769 0.00 0.00 39.77 4.51
312 313 9.088987 ACTATAAATTTGAACAACAAGACCCAT 57.911 29.630 0.00 0.00 39.77 4.00
313 314 9.927668 CTATAAATTTGAACAACAAGACCCATT 57.072 29.630 0.00 0.00 39.77 3.16
314 315 6.923928 AAATTTGAACAACAAGACCCATTG 57.076 33.333 0.00 0.00 39.77 2.82
315 316 3.451141 TTGAACAACAAGACCCATTGC 57.549 42.857 0.00 0.00 34.20 3.56
316 317 1.336440 TGAACAACAAGACCCATTGCG 59.664 47.619 0.00 0.00 33.28 4.85
317 318 1.606668 GAACAACAAGACCCATTGCGA 59.393 47.619 0.00 0.00 33.28 5.10
318 319 0.951558 ACAACAAGACCCATTGCGAC 59.048 50.000 0.00 0.00 33.28 5.19
319 320 0.110238 CAACAAGACCCATTGCGACG 60.110 55.000 0.00 0.00 33.28 5.12
320 321 1.234615 AACAAGACCCATTGCGACGG 61.235 55.000 0.00 0.00 33.28 4.79
322 323 2.589157 AAGACCCATTGCGACGGGA 61.589 57.895 13.38 0.00 46.34 5.14
323 324 2.511600 GACCCATTGCGACGGGAG 60.512 66.667 13.38 0.00 46.34 4.30
324 325 3.000819 ACCCATTGCGACGGGAGA 61.001 61.111 13.38 0.00 46.34 3.71
325 326 2.267642 CCCATTGCGACGGGAGAA 59.732 61.111 0.00 0.00 46.34 2.87
326 327 1.376683 CCCATTGCGACGGGAGAAA 60.377 57.895 0.00 0.00 46.34 2.52
327 328 0.958382 CCCATTGCGACGGGAGAAAA 60.958 55.000 0.00 0.00 46.34 2.29
328 329 0.878416 CCATTGCGACGGGAGAAAAA 59.122 50.000 0.00 0.00 0.00 1.94
381 382 9.769093 ATACGAATTCACTTGTATAACTTTTGC 57.231 29.630 6.22 0.00 0.00 3.68
382 383 7.871853 ACGAATTCACTTGTATAACTTTTGCT 58.128 30.769 6.22 0.00 0.00 3.91
383 384 8.015658 ACGAATTCACTTGTATAACTTTTGCTC 58.984 33.333 6.22 0.00 0.00 4.26
384 385 7.481798 CGAATTCACTTGTATAACTTTTGCTCC 59.518 37.037 6.22 0.00 0.00 4.70
385 386 6.569179 TTCACTTGTATAACTTTTGCTCCC 57.431 37.500 0.00 0.00 0.00 4.30
386 387 4.693566 TCACTTGTATAACTTTTGCTCCCG 59.306 41.667 0.00 0.00 0.00 5.14
387 388 3.439129 ACTTGTATAACTTTTGCTCCCGC 59.561 43.478 0.00 0.00 0.00 6.13
388 389 2.361789 TGTATAACTTTTGCTCCCGCC 58.638 47.619 0.00 0.00 34.43 6.13
389 390 1.329599 GTATAACTTTTGCTCCCGCCG 59.670 52.381 0.00 0.00 34.43 6.46
390 391 1.654023 ATAACTTTTGCTCCCGCCGC 61.654 55.000 0.00 0.00 34.43 6.53
391 392 4.887932 TATAACTTTTGCTCCCGCCGCA 62.888 50.000 0.00 0.00 35.22 5.69
392 393 3.669344 CTTTTGCTCCCGCCGCAA 61.669 61.111 0.00 0.00 44.83 4.85
393 394 2.988684 TTTTGCTCCCGCCGCAAT 60.989 55.556 5.33 0.00 45.67 3.56
394 395 2.872337 CTTTTGCTCCCGCCGCAATC 62.872 60.000 5.33 0.00 45.67 2.67
395 396 4.713735 TTGCTCCCGCCGCAATCA 62.714 61.111 0.00 0.00 41.97 2.57
396 397 4.713735 TGCTCCCGCCGCAATCAA 62.714 61.111 0.00 0.00 33.87 2.57
397 398 3.211963 GCTCCCGCCGCAATCAAT 61.212 61.111 0.00 0.00 0.00 2.57
398 399 2.774799 GCTCCCGCCGCAATCAATT 61.775 57.895 0.00 0.00 0.00 2.32
399 400 1.809207 CTCCCGCCGCAATCAATTT 59.191 52.632 0.00 0.00 0.00 1.82
400 401 0.173255 CTCCCGCCGCAATCAATTTT 59.827 50.000 0.00 0.00 0.00 1.82
401 402 0.108898 TCCCGCCGCAATCAATTTTG 60.109 50.000 0.00 0.00 0.00 2.44
402 403 0.389687 CCCGCCGCAATCAATTTTGT 60.390 50.000 0.00 0.00 0.00 2.83
403 404 1.427435 CCGCCGCAATCAATTTTGTT 58.573 45.000 0.00 0.00 0.00 2.83
404 405 1.126479 CCGCCGCAATCAATTTTGTTG 59.874 47.619 0.00 0.00 0.00 3.33
405 406 1.126479 CGCCGCAATCAATTTTGTTGG 59.874 47.619 0.00 0.00 0.00 3.77
406 407 2.142319 GCCGCAATCAATTTTGTTGGT 58.858 42.857 0.00 0.00 31.16 3.67
407 408 2.547634 GCCGCAATCAATTTTGTTGGTT 59.452 40.909 0.00 0.00 31.16 3.67
408 409 3.743396 GCCGCAATCAATTTTGTTGGTTA 59.257 39.130 0.00 0.00 31.16 2.85
409 410 4.212214 GCCGCAATCAATTTTGTTGGTTAA 59.788 37.500 0.00 0.00 31.16 2.01
410 411 5.277538 GCCGCAATCAATTTTGTTGGTTAAA 60.278 36.000 0.00 0.00 31.16 1.52
411 412 6.567511 GCCGCAATCAATTTTGTTGGTTAAAT 60.568 34.615 0.00 0.00 31.16 1.40
412 413 7.358830 CCGCAATCAATTTTGTTGGTTAAATT 58.641 30.769 0.00 0.00 35.05 1.82
413 414 7.859875 CCGCAATCAATTTTGTTGGTTAAATTT 59.140 29.630 0.00 0.00 33.04 1.82
414 415 9.869844 CGCAATCAATTTTGTTGGTTAAATTTA 57.130 25.926 0.00 0.00 33.04 1.40
483 484 8.851541 AAAACGAAGGGACTAATTGTTATACA 57.148 30.769 0.00 0.00 38.49 2.29
484 485 9.457436 AAAACGAAGGGACTAATTGTTATACAT 57.543 29.630 0.00 0.00 38.49 2.29
485 486 8.433421 AACGAAGGGACTAATTGTTATACATG 57.567 34.615 0.00 0.00 38.49 3.21
486 487 7.562135 ACGAAGGGACTAATTGTTATACATGT 58.438 34.615 2.69 2.69 38.49 3.21
487 488 7.709613 ACGAAGGGACTAATTGTTATACATGTC 59.290 37.037 0.00 0.00 38.49 3.06
488 489 7.096189 CGAAGGGACTAATTGTTATACATGTCG 60.096 40.741 0.00 0.00 38.49 4.35
489 490 6.522054 AGGGACTAATTGTTATACATGTCGG 58.478 40.000 0.00 0.00 36.02 4.79
490 491 5.178809 GGGACTAATTGTTATACATGTCGGC 59.821 44.000 0.00 0.00 0.00 5.54
491 492 5.989777 GGACTAATTGTTATACATGTCGGCT 59.010 40.000 0.00 0.00 0.00 5.52
492 493 7.149973 GGACTAATTGTTATACATGTCGGCTA 58.850 38.462 0.00 0.00 0.00 3.93
493 494 7.817962 GGACTAATTGTTATACATGTCGGCTAT 59.182 37.037 0.00 0.00 0.00 2.97
494 495 9.850628 GACTAATTGTTATACATGTCGGCTATA 57.149 33.333 0.00 0.00 0.00 1.31
498 499 6.961359 TGTTATACATGTCGGCTATAATGC 57.039 37.500 0.00 0.00 0.00 3.56
499 500 6.697395 TGTTATACATGTCGGCTATAATGCT 58.303 36.000 0.00 0.00 0.00 3.79
500 501 6.589907 TGTTATACATGTCGGCTATAATGCTG 59.410 38.462 0.00 0.00 40.46 4.41
501 502 2.771089 ACATGTCGGCTATAATGCTGG 58.229 47.619 0.00 0.00 39.62 4.85
502 503 2.104792 ACATGTCGGCTATAATGCTGGT 59.895 45.455 0.00 0.00 39.62 4.00
503 504 3.141398 CATGTCGGCTATAATGCTGGTT 58.859 45.455 0.00 0.00 39.62 3.67
504 505 4.202315 ACATGTCGGCTATAATGCTGGTTA 60.202 41.667 0.00 0.00 39.62 2.85
505 506 4.617253 TGTCGGCTATAATGCTGGTTAT 57.383 40.909 0.00 0.00 39.62 1.89
506 507 5.731957 TGTCGGCTATAATGCTGGTTATA 57.268 39.130 0.00 0.00 39.62 0.98
507 508 5.720202 TGTCGGCTATAATGCTGGTTATAG 58.280 41.667 14.46 14.46 43.07 1.31
508 509 5.479027 TGTCGGCTATAATGCTGGTTATAGA 59.521 40.000 19.31 5.22 42.95 1.98
509 510 5.805994 GTCGGCTATAATGCTGGTTATAGAC 59.194 44.000 19.31 17.05 44.12 2.59
510 511 5.479027 TCGGCTATAATGCTGGTTATAGACA 59.521 40.000 20.16 10.96 46.27 3.41
511 512 6.154534 TCGGCTATAATGCTGGTTATAGACAT 59.845 38.462 20.16 0.00 46.27 3.06
512 513 6.256539 CGGCTATAATGCTGGTTATAGACATG 59.743 42.308 20.16 0.00 46.27 3.21
513 514 6.540189 GGCTATAATGCTGGTTATAGACATGG 59.460 42.308 19.31 3.36 45.69 3.66
514 515 6.037610 GCTATAATGCTGGTTATAGACATGGC 59.962 42.308 19.31 0.00 42.95 4.40
515 516 3.862877 ATGCTGGTTATAGACATGGCA 57.137 42.857 0.00 0.00 34.73 4.92
516 517 2.917933 TGCTGGTTATAGACATGGCAC 58.082 47.619 0.00 0.00 0.00 5.01
517 518 2.505407 TGCTGGTTATAGACATGGCACT 59.495 45.455 0.00 0.00 0.00 4.40
518 519 3.054434 TGCTGGTTATAGACATGGCACTT 60.054 43.478 0.00 0.00 0.00 3.16
519 520 3.947834 GCTGGTTATAGACATGGCACTTT 59.052 43.478 0.00 0.00 0.00 2.66
520 521 4.035675 GCTGGTTATAGACATGGCACTTTC 59.964 45.833 0.00 0.00 0.00 2.62
521 522 5.431765 CTGGTTATAGACATGGCACTTTCT 58.568 41.667 0.00 0.00 0.00 2.52
522 523 5.815581 TGGTTATAGACATGGCACTTTCTT 58.184 37.500 0.00 0.00 0.00 2.52
523 524 6.953101 TGGTTATAGACATGGCACTTTCTTA 58.047 36.000 0.00 0.00 0.00 2.10
524 525 7.573710 TGGTTATAGACATGGCACTTTCTTAT 58.426 34.615 0.00 0.00 0.00 1.73
525 526 8.710239 TGGTTATAGACATGGCACTTTCTTATA 58.290 33.333 0.00 0.00 0.00 0.98
526 527 9.209175 GGTTATAGACATGGCACTTTCTTATAG 57.791 37.037 0.00 0.00 0.00 1.31
527 528 8.713271 GTTATAGACATGGCACTTTCTTATAGC 58.287 37.037 0.00 0.00 0.00 2.97
528 529 4.455606 AGACATGGCACTTTCTTATAGCC 58.544 43.478 0.00 0.00 45.41 3.93
535 536 6.944234 GGCACTTTCTTATAGCCAATAGTT 57.056 37.500 0.00 0.00 44.59 2.24
536 537 6.729187 GGCACTTTCTTATAGCCAATAGTTG 58.271 40.000 0.00 0.00 44.59 3.16
537 538 6.202226 GCACTTTCTTATAGCCAATAGTTGC 58.798 40.000 0.00 0.00 0.00 4.17
538 539 6.038714 GCACTTTCTTATAGCCAATAGTTGCT 59.961 38.462 0.00 0.00 41.57 3.91
539 540 7.226720 GCACTTTCTTATAGCCAATAGTTGCTA 59.773 37.037 0.00 0.00 43.66 3.49
552 553 7.530010 CCAATAGTTGCTATATACAACCATGC 58.470 38.462 17.34 3.74 46.85 4.06
554 555 8.446273 CAATAGTTGCTATATACAACCATGCTC 58.554 37.037 17.34 2.35 46.85 4.26
558 559 8.210946 AGTTGCTATATACAACCATGCTCTAAA 58.789 33.333 17.34 0.00 46.85 1.85
666 668 1.883275 CAAATCCGTAAGCACACCCAA 59.117 47.619 0.00 0.00 0.00 4.12
1077 1081 1.001503 CTGTGAGGAGGAGGAGGCT 59.998 63.158 0.00 0.00 0.00 4.58
1078 1082 1.305633 TGTGAGGAGGAGGAGGCTG 60.306 63.158 0.00 0.00 0.00 4.85
1079 1083 2.364842 TGAGGAGGAGGAGGCTGC 60.365 66.667 0.00 0.00 0.00 5.25
1080 1084 3.160748 GAGGAGGAGGAGGCTGCC 61.161 72.222 11.65 11.65 0.00 4.85
1719 1732 4.583871 AGAAGAAGGCCAAGATTACTGTG 58.416 43.478 5.01 0.00 0.00 3.66
2233 2246 6.979238 AGAGGCGATTACAACTAGTTATTCAC 59.021 38.462 8.04 0.03 0.00 3.18
2433 2446 2.048603 GGAGGCCATGGTTGAGCAC 61.049 63.158 14.67 0.00 0.00 4.40
2442 2455 1.882912 TGGTTGAGCACTACAAGCTG 58.117 50.000 0.00 0.00 43.58 4.24
2469 2482 7.129457 AGATAATGAATGGTTCTCTGCACTA 57.871 36.000 0.00 0.00 0.00 2.74
2766 2779 3.449737 CCATGTTTCAGGCATTCCAAGAT 59.550 43.478 0.00 0.00 33.74 2.40
3083 3096 2.355132 CTGTGGCATTGCAGAGAGATTC 59.645 50.000 11.39 0.00 34.87 2.52
3415 3428 0.808125 TAACATGGCATCCAACACGC 59.192 50.000 0.00 0.00 36.95 5.34
4217 4230 4.260948 GCAGTTAGCTACTTGAATGGCATC 60.261 45.833 0.00 0.00 41.15 3.91
4231 4244 3.198409 TGGCATCGTTCTCTGCATATT 57.802 42.857 0.00 0.00 40.18 1.28
4232 4245 2.874086 TGGCATCGTTCTCTGCATATTG 59.126 45.455 0.00 0.00 40.18 1.90
4233 4246 2.874701 GGCATCGTTCTCTGCATATTGT 59.125 45.455 0.00 0.00 40.18 2.71
4234 4247 3.313526 GGCATCGTTCTCTGCATATTGTT 59.686 43.478 0.00 0.00 40.18 2.83
4235 4248 4.277258 GCATCGTTCTCTGCATATTGTTG 58.723 43.478 0.00 0.00 38.28 3.33
4236 4249 4.034394 GCATCGTTCTCTGCATATTGTTGA 59.966 41.667 0.00 0.00 38.28 3.18
4237 4250 5.277683 GCATCGTTCTCTGCATATTGTTGAT 60.278 40.000 0.00 0.00 38.28 2.57
4343 4360 2.097629 TGAGCTGTCGATAGCACTGTAC 59.902 50.000 31.88 16.90 46.07 2.90
4431 4470 9.656040 TCTCTAATATAGGACGTTCTAGATGTC 57.344 37.037 11.71 14.31 42.46 3.06
4436 4475 4.442375 AGGACGTTCTAGATGTCAAGTG 57.558 45.455 20.84 0.00 44.53 3.16
4445 4484 7.381408 CGTTCTAGATGTCAAGTGTCTAAAACA 59.619 37.037 0.00 0.00 29.15 2.83
4452 4491 8.723942 ATGTCAAGTGTCTAAAACATCCTATC 57.276 34.615 0.00 0.00 40.80 2.08
4472 4511 5.927281 ATCTTAGTTTACAGCGGGAGTAA 57.073 39.130 0.00 0.00 0.00 2.24
4617 4666 2.945668 GCTCTGTTGTTTGAGAAGGTGT 59.054 45.455 0.00 0.00 32.44 4.16
4622 4671 1.967319 TGTTTGAGAAGGTGTCAGCC 58.033 50.000 0.00 0.00 0.00 4.85
4745 4917 7.752239 TGTTCTACACGAGCACTTAGTTAATAC 59.248 37.037 0.00 0.00 0.00 1.89
4748 4920 5.648572 ACACGAGCACTTAGTTAATACTCC 58.351 41.667 0.00 0.00 35.78 3.85
4851 5072 2.224744 TGAGCCAAGCTTGTGGTATTCA 60.225 45.455 24.35 14.44 39.88 2.57
4900 5121 3.963665 TGCTTGGAAACGTCTCAAAATG 58.036 40.909 0.00 0.00 0.00 2.32
4979 5200 4.023707 CAGCTTTGGAGACGTTTTTCAGAT 60.024 41.667 0.00 0.00 0.00 2.90
5077 5309 3.119096 GCGAACCTCACCGCCTTC 61.119 66.667 0.00 0.00 45.06 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.267642 GTATGCTGACCCACCGCA 59.732 61.111 0.00 0.00 42.34 5.69
7 8 1.815421 CTGTATGCTGACCCACCGC 60.815 63.158 0.00 0.00 0.00 5.68
8 9 0.249120 TTCTGTATGCTGACCCACCG 59.751 55.000 0.00 0.00 0.00 4.94
9 10 2.489938 TTTCTGTATGCTGACCCACC 57.510 50.000 0.00 0.00 0.00 4.61
10 11 2.749621 CCTTTTCTGTATGCTGACCCAC 59.250 50.000 0.00 0.00 0.00 4.61
11 12 2.642311 TCCTTTTCTGTATGCTGACCCA 59.358 45.455 0.00 0.00 0.00 4.51
12 13 3.055094 TCTCCTTTTCTGTATGCTGACCC 60.055 47.826 0.00 0.00 0.00 4.46
13 14 4.187694 CTCTCCTTTTCTGTATGCTGACC 58.812 47.826 0.00 0.00 0.00 4.02
14 15 4.826556 ACTCTCCTTTTCTGTATGCTGAC 58.173 43.478 0.00 0.00 0.00 3.51
15 16 5.489792 AACTCTCCTTTTCTGTATGCTGA 57.510 39.130 0.00 0.00 0.00 4.26
16 17 7.099764 TCTTAACTCTCCTTTTCTGTATGCTG 58.900 38.462 0.00 0.00 0.00 4.41
17 18 7.246171 TCTTAACTCTCCTTTTCTGTATGCT 57.754 36.000 0.00 0.00 0.00 3.79
18 19 6.036626 GCTCTTAACTCTCCTTTTCTGTATGC 59.963 42.308 0.00 0.00 0.00 3.14
19 20 7.099764 TGCTCTTAACTCTCCTTTTCTGTATG 58.900 38.462 0.00 0.00 0.00 2.39
20 21 7.246171 TGCTCTTAACTCTCCTTTTCTGTAT 57.754 36.000 0.00 0.00 0.00 2.29
21 22 6.665992 TGCTCTTAACTCTCCTTTTCTGTA 57.334 37.500 0.00 0.00 0.00 2.74
22 23 5.552870 TGCTCTTAACTCTCCTTTTCTGT 57.447 39.130 0.00 0.00 0.00 3.41
23 24 5.994668 ACTTGCTCTTAACTCTCCTTTTCTG 59.005 40.000 0.00 0.00 0.00 3.02
24 25 6.181206 ACTTGCTCTTAACTCTCCTTTTCT 57.819 37.500 0.00 0.00 0.00 2.52
25 26 6.929606 TGTACTTGCTCTTAACTCTCCTTTTC 59.070 38.462 0.00 0.00 0.00 2.29
26 27 6.827727 TGTACTTGCTCTTAACTCTCCTTTT 58.172 36.000 0.00 0.00 0.00 2.27
27 28 6.420913 TGTACTTGCTCTTAACTCTCCTTT 57.579 37.500 0.00 0.00 0.00 3.11
28 29 6.420913 TTGTACTTGCTCTTAACTCTCCTT 57.579 37.500 0.00 0.00 0.00 3.36
29 30 6.613153 ATTGTACTTGCTCTTAACTCTCCT 57.387 37.500 0.00 0.00 0.00 3.69
30 31 7.492994 CCTTATTGTACTTGCTCTTAACTCTCC 59.507 40.741 0.00 0.00 0.00 3.71
31 32 8.035984 ACCTTATTGTACTTGCTCTTAACTCTC 58.964 37.037 0.00 0.00 0.00 3.20
32 33 7.908453 ACCTTATTGTACTTGCTCTTAACTCT 58.092 34.615 0.00 0.00 0.00 3.24
33 34 9.085250 GTACCTTATTGTACTTGCTCTTAACTC 57.915 37.037 0.00 0.00 38.43 3.01
34 35 8.591072 TGTACCTTATTGTACTTGCTCTTAACT 58.409 33.333 0.00 0.00 41.34 2.24
35 36 8.767478 TGTACCTTATTGTACTTGCTCTTAAC 57.233 34.615 0.00 0.00 41.34 2.01
36 37 8.591072 ACTGTACCTTATTGTACTTGCTCTTAA 58.409 33.333 0.00 0.00 41.34 1.85
37 38 8.130671 ACTGTACCTTATTGTACTTGCTCTTA 57.869 34.615 0.00 0.00 41.34 2.10
38 39 7.005709 ACTGTACCTTATTGTACTTGCTCTT 57.994 36.000 0.00 0.00 41.34 2.85
39 40 6.210784 TGACTGTACCTTATTGTACTTGCTCT 59.789 38.462 0.00 0.00 41.34 4.09
40 41 6.395629 TGACTGTACCTTATTGTACTTGCTC 58.604 40.000 0.00 0.00 41.34 4.26
41 42 6.354794 TGACTGTACCTTATTGTACTTGCT 57.645 37.500 0.00 0.00 41.34 3.91
42 43 5.063564 GCTGACTGTACCTTATTGTACTTGC 59.936 44.000 0.00 0.00 41.34 4.01
43 44 6.163476 TGCTGACTGTACCTTATTGTACTTG 58.837 40.000 0.00 0.00 41.34 3.16
44 45 6.354794 TGCTGACTGTACCTTATTGTACTT 57.645 37.500 0.00 0.00 41.34 2.24
45 46 5.105310 CCTGCTGACTGTACCTTATTGTACT 60.105 44.000 0.00 0.00 41.34 2.73
46 47 5.109903 CCTGCTGACTGTACCTTATTGTAC 58.890 45.833 0.00 0.00 41.18 2.90
47 48 4.382685 GCCTGCTGACTGTACCTTATTGTA 60.383 45.833 0.00 0.00 0.00 2.41
48 49 3.619979 GCCTGCTGACTGTACCTTATTGT 60.620 47.826 0.00 0.00 0.00 2.71
49 50 2.939103 GCCTGCTGACTGTACCTTATTG 59.061 50.000 0.00 0.00 0.00 1.90
50 51 2.840651 AGCCTGCTGACTGTACCTTATT 59.159 45.455 0.00 0.00 0.00 1.40
51 52 2.169352 CAGCCTGCTGACTGTACCTTAT 59.831 50.000 13.85 0.00 46.30 1.73
52 53 1.550524 CAGCCTGCTGACTGTACCTTA 59.449 52.381 13.85 0.00 46.30 2.69
53 54 0.322975 CAGCCTGCTGACTGTACCTT 59.677 55.000 13.85 0.00 46.30 3.50
54 55 0.833834 ACAGCCTGCTGACTGTACCT 60.834 55.000 24.88 0.00 45.09 3.08
55 56 0.895530 TACAGCCTGCTGACTGTACC 59.104 55.000 24.88 0.00 45.09 3.34
56 57 2.611518 CTTACAGCCTGCTGACTGTAC 58.388 52.381 24.88 0.00 46.25 2.90
57 58 1.550524 CCTTACAGCCTGCTGACTGTA 59.449 52.381 24.88 14.29 45.09 2.74
59 60 0.610174 TCCTTACAGCCTGCTGACTG 59.390 55.000 24.88 12.93 46.30 3.51
60 61 0.901124 CTCCTTACAGCCTGCTGACT 59.099 55.000 24.88 6.81 46.30 3.41
61 62 0.610687 ACTCCTTACAGCCTGCTGAC 59.389 55.000 24.88 0.00 46.30 3.51
62 63 2.231716 TACTCCTTACAGCCTGCTGA 57.768 50.000 24.88 6.66 46.30 4.26
64 65 2.907042 ACTTTACTCCTTACAGCCTGCT 59.093 45.455 0.00 0.00 0.00 4.24
65 66 3.336138 ACTTTACTCCTTACAGCCTGC 57.664 47.619 0.00 0.00 0.00 4.85
66 67 9.614792 AAATATTACTTTACTCCTTACAGCCTG 57.385 33.333 0.00 0.00 0.00 4.85
67 68 9.614792 CAAATATTACTTTACTCCTTACAGCCT 57.385 33.333 0.00 0.00 0.00 4.58
68 69 9.392259 ACAAATATTACTTTACTCCTTACAGCC 57.608 33.333 0.00 0.00 0.00 4.85
86 87 9.905713 TCTCCTTCAACTAAGCATACAAATATT 57.094 29.630 0.00 0.00 33.49 1.28
87 88 9.905713 TTCTCCTTCAACTAAGCATACAAATAT 57.094 29.630 0.00 0.00 33.49 1.28
88 89 9.733556 TTTCTCCTTCAACTAAGCATACAAATA 57.266 29.630 0.00 0.00 33.49 1.40
89 90 8.635765 TTTCTCCTTCAACTAAGCATACAAAT 57.364 30.769 0.00 0.00 33.49 2.32
90 91 8.458573 TTTTCTCCTTCAACTAAGCATACAAA 57.541 30.769 0.00 0.00 33.49 2.83
91 92 7.936847 TCTTTTCTCCTTCAACTAAGCATACAA 59.063 33.333 0.00 0.00 33.49 2.41
92 93 7.450074 TCTTTTCTCCTTCAACTAAGCATACA 58.550 34.615 0.00 0.00 33.49 2.29
93 94 7.907214 TCTTTTCTCCTTCAACTAAGCATAC 57.093 36.000 0.00 0.00 33.49 2.39
94 95 9.823647 CTATCTTTTCTCCTTCAACTAAGCATA 57.176 33.333 0.00 0.00 33.49 3.14
95 96 7.772757 CCTATCTTTTCTCCTTCAACTAAGCAT 59.227 37.037 0.00 0.00 33.49 3.79
96 97 7.038302 TCCTATCTTTTCTCCTTCAACTAAGCA 60.038 37.037 0.00 0.00 33.49 3.91
97 98 7.331791 TCCTATCTTTTCTCCTTCAACTAAGC 58.668 38.462 0.00 0.00 33.49 3.09
98 99 8.754080 TCTCCTATCTTTTCTCCTTCAACTAAG 58.246 37.037 0.00 0.00 34.73 2.18
99 100 8.666129 TCTCCTATCTTTTCTCCTTCAACTAA 57.334 34.615 0.00 0.00 0.00 2.24
100 101 7.343316 CCTCTCCTATCTTTTCTCCTTCAACTA 59.657 40.741 0.00 0.00 0.00 2.24
101 102 6.156083 CCTCTCCTATCTTTTCTCCTTCAACT 59.844 42.308 0.00 0.00 0.00 3.16
102 103 6.345298 CCTCTCCTATCTTTTCTCCTTCAAC 58.655 44.000 0.00 0.00 0.00 3.18
103 104 5.426833 CCCTCTCCTATCTTTTCTCCTTCAA 59.573 44.000 0.00 0.00 0.00 2.69
104 105 4.965532 CCCTCTCCTATCTTTTCTCCTTCA 59.034 45.833 0.00 0.00 0.00 3.02
105 106 5.212745 TCCCTCTCCTATCTTTTCTCCTTC 58.787 45.833 0.00 0.00 0.00 3.46
106 107 5.227917 TCCCTCTCCTATCTTTTCTCCTT 57.772 43.478 0.00 0.00 0.00 3.36
107 108 4.909355 TCCCTCTCCTATCTTTTCTCCT 57.091 45.455 0.00 0.00 0.00 3.69
108 109 5.368230 ACATTCCCTCTCCTATCTTTTCTCC 59.632 44.000 0.00 0.00 0.00 3.71
109 110 6.493189 ACATTCCCTCTCCTATCTTTTCTC 57.507 41.667 0.00 0.00 0.00 2.87
110 111 7.419634 GCTTACATTCCCTCTCCTATCTTTTCT 60.420 40.741 0.00 0.00 0.00 2.52
111 112 6.708502 GCTTACATTCCCTCTCCTATCTTTTC 59.291 42.308 0.00 0.00 0.00 2.29
112 113 6.158695 TGCTTACATTCCCTCTCCTATCTTTT 59.841 38.462 0.00 0.00 0.00 2.27
113 114 5.667626 TGCTTACATTCCCTCTCCTATCTTT 59.332 40.000 0.00 0.00 0.00 2.52
114 115 5.219739 TGCTTACATTCCCTCTCCTATCTT 58.780 41.667 0.00 0.00 0.00 2.40
115 116 4.820775 TGCTTACATTCCCTCTCCTATCT 58.179 43.478 0.00 0.00 0.00 1.98
116 117 4.020662 CCTGCTTACATTCCCTCTCCTATC 60.021 50.000 0.00 0.00 0.00 2.08
117 118 3.906846 CCTGCTTACATTCCCTCTCCTAT 59.093 47.826 0.00 0.00 0.00 2.57
118 119 3.309296 CCTGCTTACATTCCCTCTCCTA 58.691 50.000 0.00 0.00 0.00 2.94
119 120 2.122768 CCTGCTTACATTCCCTCTCCT 58.877 52.381 0.00 0.00 0.00 3.69
120 121 1.475930 GCCTGCTTACATTCCCTCTCC 60.476 57.143 0.00 0.00 0.00 3.71
121 122 1.488393 AGCCTGCTTACATTCCCTCTC 59.512 52.381 0.00 0.00 0.00 3.20
122 123 1.488393 GAGCCTGCTTACATTCCCTCT 59.512 52.381 0.00 0.00 0.00 3.69
123 124 1.488393 AGAGCCTGCTTACATTCCCTC 59.512 52.381 0.00 0.00 0.00 4.30
124 125 1.488393 GAGAGCCTGCTTACATTCCCT 59.512 52.381 0.00 0.00 0.00 4.20
125 126 1.210478 TGAGAGCCTGCTTACATTCCC 59.790 52.381 0.00 0.00 0.00 3.97
126 127 2.698855 TGAGAGCCTGCTTACATTCC 57.301 50.000 0.00 0.00 0.00 3.01
127 128 2.290093 GCATGAGAGCCTGCTTACATTC 59.710 50.000 0.00 2.84 35.49 2.67
128 129 2.295885 GCATGAGAGCCTGCTTACATT 58.704 47.619 0.00 0.00 35.49 2.71
129 130 1.211212 TGCATGAGAGCCTGCTTACAT 59.789 47.619 0.00 0.00 39.16 2.29
130 131 0.614812 TGCATGAGAGCCTGCTTACA 59.385 50.000 0.00 0.00 39.16 2.41
131 132 1.602851 CATGCATGAGAGCCTGCTTAC 59.397 52.381 22.59 0.00 39.16 2.34
132 133 1.487558 TCATGCATGAGAGCCTGCTTA 59.512 47.619 25.42 0.00 39.16 3.09
133 134 0.255033 TCATGCATGAGAGCCTGCTT 59.745 50.000 25.42 0.00 39.16 3.91
134 135 0.474614 ATCATGCATGAGAGCCTGCT 59.525 50.000 31.36 12.02 40.64 4.24
135 136 0.875728 GATCATGCATGAGAGCCTGC 59.124 55.000 31.36 12.57 40.64 4.85
136 137 1.202770 TGGATCATGCATGAGAGCCTG 60.203 52.381 31.36 4.36 40.64 4.85
137 138 1.072489 CTGGATCATGCATGAGAGCCT 59.928 52.381 31.36 16.71 40.64 4.58
138 139 1.524848 CTGGATCATGCATGAGAGCC 58.475 55.000 31.36 28.73 40.64 4.70
139 140 0.875728 GCTGGATCATGCATGAGAGC 59.124 55.000 31.36 29.64 40.64 4.09
140 141 2.147150 CAGCTGGATCATGCATGAGAG 58.853 52.381 31.36 25.43 40.64 3.20
141 142 1.814248 GCAGCTGGATCATGCATGAGA 60.814 52.381 31.36 17.96 40.64 3.27
142 143 0.593618 GCAGCTGGATCATGCATGAG 59.406 55.000 31.36 19.93 40.64 2.90
143 144 0.106918 TGCAGCTGGATCATGCATGA 60.107 50.000 30.47 30.47 44.56 3.07
144 145 2.414750 TGCAGCTGGATCATGCATG 58.585 52.632 21.07 21.07 44.56 4.06
147 148 1.636988 GTTTTGCAGCTGGATCATGC 58.363 50.000 17.12 0.00 40.40 4.06
148 149 1.200716 ACGTTTTGCAGCTGGATCATG 59.799 47.619 17.12 10.09 0.00 3.07
149 150 1.200716 CACGTTTTGCAGCTGGATCAT 59.799 47.619 17.12 0.00 0.00 2.45
150 151 0.592637 CACGTTTTGCAGCTGGATCA 59.407 50.000 17.12 1.56 0.00 2.92
151 152 0.874390 TCACGTTTTGCAGCTGGATC 59.126 50.000 17.12 5.73 0.00 3.36
152 153 1.470098 GATCACGTTTTGCAGCTGGAT 59.530 47.619 17.12 6.70 0.00 3.41
153 154 0.874390 GATCACGTTTTGCAGCTGGA 59.126 50.000 17.12 10.66 0.00 3.86
154 155 0.453282 CGATCACGTTTTGCAGCTGG 60.453 55.000 17.12 0.00 34.56 4.85
155 156 2.991728 CGATCACGTTTTGCAGCTG 58.008 52.632 10.11 10.11 34.56 4.24
162 163 8.719053 TCACATAGTGCCTACGATCACGTTTT 62.719 42.308 0.00 0.00 42.13 2.43
163 164 7.340709 TCACATAGTGCCTACGATCACGTTT 62.341 44.000 0.00 0.00 42.13 3.60
164 165 5.931412 TCACATAGTGCCTACGATCACGTT 61.931 45.833 0.00 0.00 42.13 3.99
165 166 4.487201 TCACATAGTGCCTACGATCACGT 61.487 47.826 0.00 0.00 43.38 4.49
166 167 2.032924 TCACATAGTGCCTACGATCACG 59.967 50.000 0.00 0.00 38.19 4.35
167 168 3.315470 TCTCACATAGTGCCTACGATCAC 59.685 47.826 0.00 0.00 32.98 3.06
168 169 3.551846 TCTCACATAGTGCCTACGATCA 58.448 45.455 0.00 0.00 32.98 2.92
169 170 3.566322 ACTCTCACATAGTGCCTACGATC 59.434 47.826 0.00 0.00 32.98 3.69
170 171 3.316588 CACTCTCACATAGTGCCTACGAT 59.683 47.826 0.00 0.00 38.08 3.73
171 172 2.683362 CACTCTCACATAGTGCCTACGA 59.317 50.000 0.00 0.00 38.08 3.43
172 173 2.683362 TCACTCTCACATAGTGCCTACG 59.317 50.000 0.00 0.00 43.30 3.51
173 174 4.720649 TTCACTCTCACATAGTGCCTAC 57.279 45.455 0.00 0.00 43.30 3.18
174 175 5.738619 TTTTCACTCTCACATAGTGCCTA 57.261 39.130 0.00 0.00 43.30 3.93
175 176 4.623932 TTTTCACTCTCACATAGTGCCT 57.376 40.909 0.00 0.00 43.30 4.75
176 177 5.886960 ATTTTTCACTCTCACATAGTGCC 57.113 39.130 0.00 0.00 43.30 5.01
177 178 6.090898 ACGTATTTTTCACTCTCACATAGTGC 59.909 38.462 0.00 0.00 43.30 4.40
178 179 7.328493 TGACGTATTTTTCACTCTCACATAGTG 59.672 37.037 0.00 0.00 44.66 2.74
179 180 7.375834 TGACGTATTTTTCACTCTCACATAGT 58.624 34.615 0.00 0.00 0.00 2.12
180 181 7.812309 TGACGTATTTTTCACTCTCACATAG 57.188 36.000 0.00 0.00 0.00 2.23
181 182 7.201522 GCATGACGTATTTTTCACTCTCACATA 60.202 37.037 0.00 0.00 0.00 2.29
182 183 6.402550 GCATGACGTATTTTTCACTCTCACAT 60.403 38.462 0.00 0.00 0.00 3.21
183 184 5.107104 GCATGACGTATTTTTCACTCTCACA 60.107 40.000 0.00 0.00 0.00 3.58
184 185 5.107104 TGCATGACGTATTTTTCACTCTCAC 60.107 40.000 0.00 0.00 0.00 3.51
185 186 4.994217 TGCATGACGTATTTTTCACTCTCA 59.006 37.500 0.00 0.00 0.00 3.27
186 187 5.530519 TGCATGACGTATTTTTCACTCTC 57.469 39.130 0.00 0.00 0.00 3.20
187 188 6.500684 AATGCATGACGTATTTTTCACTCT 57.499 33.333 0.00 0.00 0.00 3.24
188 189 8.841444 ATTAATGCATGACGTATTTTTCACTC 57.159 30.769 0.00 0.00 31.71 3.51
195 196 9.878599 GCTACTTTATTAATGCATGACGTATTT 57.121 29.630 0.00 0.00 31.71 1.40
196 197 9.051679 TGCTACTTTATTAATGCATGACGTATT 57.948 29.630 0.00 0.00 34.03 1.89
197 198 8.495949 GTGCTACTTTATTAATGCATGACGTAT 58.504 33.333 0.00 0.00 32.98 3.06
198 199 7.492994 TGTGCTACTTTATTAATGCATGACGTA 59.507 33.333 0.00 0.00 32.98 3.57
199 200 6.315144 TGTGCTACTTTATTAATGCATGACGT 59.685 34.615 0.00 0.00 32.98 4.34
200 201 6.714492 TGTGCTACTTTATTAATGCATGACG 58.286 36.000 0.00 0.00 32.98 4.35
218 219 6.075315 TGGAGGAAGTAGCTATTATGTGCTA 58.925 40.000 0.00 0.00 40.35 3.49
219 220 4.901849 TGGAGGAAGTAGCTATTATGTGCT 59.098 41.667 0.00 0.00 42.67 4.40
220 221 5.215252 TGGAGGAAGTAGCTATTATGTGC 57.785 43.478 0.00 0.00 0.00 4.57
221 222 7.675062 AGAATGGAGGAAGTAGCTATTATGTG 58.325 38.462 0.00 0.00 0.00 3.21
222 223 7.863901 AGAATGGAGGAAGTAGCTATTATGT 57.136 36.000 0.00 0.00 0.00 2.29
236 237 8.877195 GGGTACACTATATTTTAGAATGGAGGA 58.123 37.037 0.00 0.00 0.00 3.71
237 238 7.817962 CGGGTACACTATATTTTAGAATGGAGG 59.182 40.741 0.00 0.00 0.00 4.30
238 239 7.331193 GCGGGTACACTATATTTTAGAATGGAG 59.669 40.741 0.00 0.00 0.00 3.86
239 240 7.156673 GCGGGTACACTATATTTTAGAATGGA 58.843 38.462 0.00 0.00 0.00 3.41
240 241 6.090358 CGCGGGTACACTATATTTTAGAATGG 59.910 42.308 0.00 0.00 0.00 3.16
241 242 6.400727 GCGCGGGTACACTATATTTTAGAATG 60.401 42.308 8.83 0.00 0.00 2.67
242 243 5.636543 GCGCGGGTACACTATATTTTAGAAT 59.363 40.000 8.83 0.00 0.00 2.40
243 244 4.984161 GCGCGGGTACACTATATTTTAGAA 59.016 41.667 8.83 0.00 0.00 2.10
244 245 4.279169 AGCGCGGGTACACTATATTTTAGA 59.721 41.667 8.83 0.00 0.00 2.10
245 246 4.553323 AGCGCGGGTACACTATATTTTAG 58.447 43.478 8.83 0.00 0.00 1.85
246 247 4.589216 AGCGCGGGTACACTATATTTTA 57.411 40.909 8.83 0.00 0.00 1.52
247 248 3.464111 AGCGCGGGTACACTATATTTT 57.536 42.857 8.83 0.00 0.00 1.82
248 249 3.464111 AAGCGCGGGTACACTATATTT 57.536 42.857 8.83 0.00 0.00 1.40
249 250 3.464111 AAAGCGCGGGTACACTATATT 57.536 42.857 8.83 0.00 0.00 1.28
250 251 3.387397 GAAAAGCGCGGGTACACTATAT 58.613 45.455 8.83 0.00 0.00 0.86
251 252 2.795681 CGAAAAGCGCGGGTACACTATA 60.796 50.000 8.83 0.00 0.00 1.31
252 253 1.648504 GAAAAGCGCGGGTACACTAT 58.351 50.000 8.83 0.00 0.00 2.12
253 254 0.733566 CGAAAAGCGCGGGTACACTA 60.734 55.000 8.83 0.00 0.00 2.74
254 255 2.025418 CGAAAAGCGCGGGTACACT 61.025 57.895 8.83 0.00 0.00 3.55
255 256 1.952266 CTCGAAAAGCGCGGGTACAC 61.952 60.000 8.83 0.00 40.61 2.90
256 257 1.735198 CTCGAAAAGCGCGGGTACA 60.735 57.895 8.83 0.00 40.61 2.90
257 258 2.450345 CCTCGAAAAGCGCGGGTAC 61.450 63.158 8.83 0.00 41.10 3.34
258 259 2.125832 CCTCGAAAAGCGCGGGTA 60.126 61.111 8.83 0.00 41.10 3.69
262 263 1.635663 ATTGGACCTCGAAAAGCGCG 61.636 55.000 0.00 0.00 40.61 6.86
263 264 0.521735 AATTGGACCTCGAAAAGCGC 59.478 50.000 0.00 0.00 40.61 5.92
264 265 2.979813 CAAAATTGGACCTCGAAAAGCG 59.020 45.455 0.00 0.00 42.69 4.68
265 266 3.981416 GTCAAAATTGGACCTCGAAAAGC 59.019 43.478 0.00 0.00 0.00 3.51
266 267 5.438761 AGTCAAAATTGGACCTCGAAAAG 57.561 39.130 0.00 0.00 35.89 2.27
267 268 8.624367 TTATAGTCAAAATTGGACCTCGAAAA 57.376 30.769 0.00 0.00 35.89 2.29
268 269 8.624367 TTTATAGTCAAAATTGGACCTCGAAA 57.376 30.769 0.00 0.00 35.89 3.46
269 270 8.801882 ATTTATAGTCAAAATTGGACCTCGAA 57.198 30.769 0.00 0.00 35.89 3.71
270 271 8.801882 AATTTATAGTCAAAATTGGACCTCGA 57.198 30.769 0.00 0.00 35.69 4.04
271 272 9.289303 CAAATTTATAGTCAAAATTGGACCTCG 57.711 33.333 0.00 0.00 36.81 4.63
283 284 9.959749 GGTCTTGTTGTTCAAATTTATAGTCAA 57.040 29.630 0.00 0.00 35.48 3.18
284 285 8.573035 GGGTCTTGTTGTTCAAATTTATAGTCA 58.427 33.333 0.00 0.00 35.48 3.41
285 286 8.573035 TGGGTCTTGTTGTTCAAATTTATAGTC 58.427 33.333 0.00 0.00 35.48 2.59
286 287 8.472007 TGGGTCTTGTTGTTCAAATTTATAGT 57.528 30.769 0.00 0.00 35.48 2.12
287 288 9.927668 AATGGGTCTTGTTGTTCAAATTTATAG 57.072 29.630 0.00 0.00 35.48 1.31
288 289 9.703892 CAATGGGTCTTGTTGTTCAAATTTATA 57.296 29.630 0.00 0.00 35.48 0.98
289 290 7.173047 GCAATGGGTCTTGTTGTTCAAATTTAT 59.827 33.333 0.00 0.00 35.48 1.40
290 291 6.481644 GCAATGGGTCTTGTTGTTCAAATTTA 59.518 34.615 0.00 0.00 35.48 1.40
291 292 5.296531 GCAATGGGTCTTGTTGTTCAAATTT 59.703 36.000 0.00 0.00 35.48 1.82
292 293 4.815846 GCAATGGGTCTTGTTGTTCAAATT 59.184 37.500 0.00 0.00 35.48 1.82
293 294 4.379652 GCAATGGGTCTTGTTGTTCAAAT 58.620 39.130 0.00 0.00 35.48 2.32
294 295 3.736433 CGCAATGGGTCTTGTTGTTCAAA 60.736 43.478 0.00 0.00 35.48 2.69
295 296 2.223688 CGCAATGGGTCTTGTTGTTCAA 60.224 45.455 0.00 0.00 34.61 2.69
296 297 1.336440 CGCAATGGGTCTTGTTGTTCA 59.664 47.619 0.00 0.00 0.00 3.18
297 298 1.606668 TCGCAATGGGTCTTGTTGTTC 59.393 47.619 0.00 0.00 0.00 3.18
298 299 1.336755 GTCGCAATGGGTCTTGTTGTT 59.663 47.619 0.00 0.00 0.00 2.83
299 300 0.951558 GTCGCAATGGGTCTTGTTGT 59.048 50.000 0.00 0.00 0.00 3.32
300 301 0.110238 CGTCGCAATGGGTCTTGTTG 60.110 55.000 0.00 0.00 0.00 3.33
301 302 1.234615 CCGTCGCAATGGGTCTTGTT 61.235 55.000 0.00 0.00 0.00 2.83
302 303 1.671054 CCGTCGCAATGGGTCTTGT 60.671 57.895 0.00 0.00 0.00 3.16
303 304 2.398554 CCCGTCGCAATGGGTCTTG 61.399 63.158 0.00 0.00 45.60 3.02
304 305 2.046314 CCCGTCGCAATGGGTCTT 60.046 61.111 0.00 0.00 45.60 3.01
309 310 0.878416 TTTTTCTCCCGTCGCAATGG 59.122 50.000 0.00 0.00 0.00 3.16
355 356 9.769093 GCAAAAGTTATACAAGTGAATTCGTAT 57.231 29.630 0.04 5.16 0.00 3.06
356 357 8.995220 AGCAAAAGTTATACAAGTGAATTCGTA 58.005 29.630 0.04 0.00 0.00 3.43
357 358 7.871853 AGCAAAAGTTATACAAGTGAATTCGT 58.128 30.769 0.04 0.00 0.00 3.85
358 359 7.481798 GGAGCAAAAGTTATACAAGTGAATTCG 59.518 37.037 0.04 0.00 0.00 3.34
359 360 7.755373 GGGAGCAAAAGTTATACAAGTGAATTC 59.245 37.037 0.00 0.00 0.00 2.17
360 361 7.574967 CGGGAGCAAAAGTTATACAAGTGAATT 60.575 37.037 0.00 0.00 0.00 2.17
361 362 6.128007 CGGGAGCAAAAGTTATACAAGTGAAT 60.128 38.462 0.00 0.00 0.00 2.57
362 363 5.180492 CGGGAGCAAAAGTTATACAAGTGAA 59.820 40.000 0.00 0.00 0.00 3.18
363 364 4.693566 CGGGAGCAAAAGTTATACAAGTGA 59.306 41.667 0.00 0.00 0.00 3.41
364 365 4.969816 CGGGAGCAAAAGTTATACAAGTG 58.030 43.478 0.00 0.00 0.00 3.16
381 382 0.173255 AAAATTGATTGCGGCGGGAG 59.827 50.000 9.78 0.00 0.00 4.30
382 383 0.108898 CAAAATTGATTGCGGCGGGA 60.109 50.000 9.78 0.00 0.00 5.14
383 384 0.389687 ACAAAATTGATTGCGGCGGG 60.390 50.000 9.78 0.00 33.52 6.13
384 385 1.126479 CAACAAAATTGATTGCGGCGG 59.874 47.619 9.78 0.00 33.52 6.13
385 386 1.126479 CCAACAAAATTGATTGCGGCG 59.874 47.619 0.51 0.51 33.52 6.46
386 387 2.142319 ACCAACAAAATTGATTGCGGC 58.858 42.857 0.00 0.00 32.21 6.53
387 388 5.914085 TTAACCAACAAAATTGATTGCGG 57.086 34.783 0.00 0.00 33.52 5.69
388 389 8.779603 AAATTTAACCAACAAAATTGATTGCG 57.220 26.923 0.00 0.00 35.89 4.85
457 458 9.941325 TGTATAACAATTAGTCCCTTCGTTTTA 57.059 29.630 0.00 0.00 0.00 1.52
458 459 8.851541 TGTATAACAATTAGTCCCTTCGTTTT 57.148 30.769 0.00 0.00 0.00 2.43
459 460 8.889717 CATGTATAACAATTAGTCCCTTCGTTT 58.110 33.333 0.00 0.00 0.00 3.60
460 461 8.044908 ACATGTATAACAATTAGTCCCTTCGTT 58.955 33.333 0.00 0.00 0.00 3.85
461 462 7.562135 ACATGTATAACAATTAGTCCCTTCGT 58.438 34.615 0.00 0.00 0.00 3.85
462 463 7.096189 CGACATGTATAACAATTAGTCCCTTCG 60.096 40.741 0.00 0.00 0.00 3.79
463 464 7.170998 CCGACATGTATAACAATTAGTCCCTTC 59.829 40.741 0.00 0.00 0.00 3.46
464 465 6.990349 CCGACATGTATAACAATTAGTCCCTT 59.010 38.462 0.00 0.00 0.00 3.95
465 466 6.522054 CCGACATGTATAACAATTAGTCCCT 58.478 40.000 0.00 0.00 0.00 4.20
466 467 5.178809 GCCGACATGTATAACAATTAGTCCC 59.821 44.000 0.00 0.00 0.00 4.46
467 468 5.989777 AGCCGACATGTATAACAATTAGTCC 59.010 40.000 0.00 0.00 0.00 3.85
468 469 8.758633 ATAGCCGACATGTATAACAATTAGTC 57.241 34.615 0.00 0.00 0.00 2.59
472 473 8.450964 GCATTATAGCCGACATGTATAACAATT 58.549 33.333 0.00 0.00 0.00 2.32
473 474 7.824289 AGCATTATAGCCGACATGTATAACAAT 59.176 33.333 0.00 0.00 34.23 2.71
474 475 7.117667 CAGCATTATAGCCGACATGTATAACAA 59.882 37.037 0.00 0.00 34.23 2.83
475 476 6.589907 CAGCATTATAGCCGACATGTATAACA 59.410 38.462 0.00 0.00 34.23 2.41
476 477 6.036083 CCAGCATTATAGCCGACATGTATAAC 59.964 42.308 0.00 0.00 34.23 1.89
477 478 6.106003 CCAGCATTATAGCCGACATGTATAA 58.894 40.000 0.00 0.00 34.23 0.98
478 479 5.186992 ACCAGCATTATAGCCGACATGTATA 59.813 40.000 0.00 0.00 34.23 1.47
479 480 4.020218 ACCAGCATTATAGCCGACATGTAT 60.020 41.667 0.00 0.00 34.23 2.29
480 481 3.323691 ACCAGCATTATAGCCGACATGTA 59.676 43.478 0.00 0.00 34.23 2.29
481 482 2.104792 ACCAGCATTATAGCCGACATGT 59.895 45.455 0.00 0.00 34.23 3.21
482 483 2.771089 ACCAGCATTATAGCCGACATG 58.229 47.619 0.00 0.00 34.23 3.21
483 484 3.492102 AACCAGCATTATAGCCGACAT 57.508 42.857 0.00 0.00 34.23 3.06
484 485 4.617253 ATAACCAGCATTATAGCCGACA 57.383 40.909 0.00 0.00 34.23 4.35
485 486 5.805994 GTCTATAACCAGCATTATAGCCGAC 59.194 44.000 13.58 7.18 41.77 4.79
486 487 5.479027 TGTCTATAACCAGCATTATAGCCGA 59.521 40.000 13.58 0.98 41.77 5.54
487 488 5.720202 TGTCTATAACCAGCATTATAGCCG 58.280 41.667 13.58 0.00 41.77 5.52
488 489 6.540189 CCATGTCTATAACCAGCATTATAGCC 59.460 42.308 13.58 6.89 41.77 3.93
489 490 6.037610 GCCATGTCTATAACCAGCATTATAGC 59.962 42.308 13.58 10.72 41.77 2.97
490 491 7.065085 GTGCCATGTCTATAACCAGCATTATAG 59.935 40.741 12.73 12.73 42.71 1.31
491 492 6.878923 GTGCCATGTCTATAACCAGCATTATA 59.121 38.462 0.00 0.00 31.44 0.98
492 493 5.707298 GTGCCATGTCTATAACCAGCATTAT 59.293 40.000 0.00 0.00 31.44 1.28
493 494 5.063204 GTGCCATGTCTATAACCAGCATTA 58.937 41.667 0.00 0.00 31.44 1.90
494 495 3.885297 GTGCCATGTCTATAACCAGCATT 59.115 43.478 0.00 0.00 31.44 3.56
495 496 3.137176 AGTGCCATGTCTATAACCAGCAT 59.863 43.478 0.00 0.00 31.44 3.79
496 497 2.505407 AGTGCCATGTCTATAACCAGCA 59.495 45.455 0.00 0.00 0.00 4.41
497 498 3.199880 AGTGCCATGTCTATAACCAGC 57.800 47.619 0.00 0.00 0.00 4.85
498 499 5.431765 AGAAAGTGCCATGTCTATAACCAG 58.568 41.667 0.00 0.00 0.00 4.00
499 500 5.435686 AGAAAGTGCCATGTCTATAACCA 57.564 39.130 0.00 0.00 0.00 3.67
500 501 9.209175 CTATAAGAAAGTGCCATGTCTATAACC 57.791 37.037 0.00 0.00 0.00 2.85
501 502 8.713271 GCTATAAGAAAGTGCCATGTCTATAAC 58.287 37.037 0.00 0.00 0.00 1.89
502 503 7.878127 GGCTATAAGAAAGTGCCATGTCTATAA 59.122 37.037 0.00 0.00 42.79 0.98
503 504 7.386851 GGCTATAAGAAAGTGCCATGTCTATA 58.613 38.462 0.00 0.00 42.79 1.31
504 505 6.234177 GGCTATAAGAAAGTGCCATGTCTAT 58.766 40.000 0.00 0.00 42.79 1.98
505 506 5.611374 GGCTATAAGAAAGTGCCATGTCTA 58.389 41.667 0.00 0.00 42.79 2.59
506 507 4.455606 GGCTATAAGAAAGTGCCATGTCT 58.544 43.478 0.00 0.00 42.79 3.41
507 508 4.820284 GGCTATAAGAAAGTGCCATGTC 57.180 45.455 0.00 0.00 42.79 3.06
512 513 6.729187 CAACTATTGGCTATAAGAAAGTGCC 58.271 40.000 0.00 0.00 43.49 5.01
513 514 6.038714 AGCAACTATTGGCTATAAGAAAGTGC 59.961 38.462 0.00 0.00 38.90 4.40
514 515 7.559590 AGCAACTATTGGCTATAAGAAAGTG 57.440 36.000 0.00 0.00 38.90 3.16
524 525 7.969004 TGGTTGTATATAGCAACTATTGGCTA 58.031 34.615 18.94 0.00 45.75 3.93
525 526 6.837312 TGGTTGTATATAGCAACTATTGGCT 58.163 36.000 18.94 0.00 43.93 4.75
526 527 7.530010 CATGGTTGTATATAGCAACTATTGGC 58.470 38.462 18.94 8.86 42.59 4.52
527 528 7.391554 AGCATGGTTGTATATAGCAACTATTGG 59.608 37.037 18.94 12.70 42.59 3.16
528 529 8.327941 AGCATGGTTGTATATAGCAACTATTG 57.672 34.615 18.94 15.81 42.59 1.90
529 530 8.378565 AGAGCATGGTTGTATATAGCAACTATT 58.621 33.333 18.94 10.47 42.59 1.73
530 531 7.911651 AGAGCATGGTTGTATATAGCAACTAT 58.088 34.615 18.94 17.00 44.83 2.12
531 532 7.303182 AGAGCATGGTTGTATATAGCAACTA 57.697 36.000 18.94 16.01 43.93 2.24
532 533 6.179906 AGAGCATGGTTGTATATAGCAACT 57.820 37.500 18.94 5.49 43.93 3.16
533 534 7.962964 TTAGAGCATGGTTGTATATAGCAAC 57.037 36.000 14.66 14.66 43.78 4.17
534 535 8.607441 CTTTAGAGCATGGTTGTATATAGCAA 57.393 34.615 0.00 0.00 0.00 3.91
552 553 1.097547 CACATGGCCCCGCTTTAGAG 61.098 60.000 0.00 0.00 0.00 2.43
554 555 1.376609 GACACATGGCCCCGCTTTAG 61.377 60.000 0.00 0.00 0.00 1.85
558 559 4.415150 CTGACACATGGCCCCGCT 62.415 66.667 0.00 0.00 0.00 5.52
624 626 0.681564 TCTGGACTCCGGAGAGAAGC 60.682 60.000 37.69 18.96 43.39 3.86
666 668 4.475381 GGAAGGAGGAGGAGGATAGTTTTT 59.525 45.833 0.00 0.00 0.00 1.94
678 680 1.957877 GATGAGTACGGAAGGAGGAGG 59.042 57.143 0.00 0.00 0.00 4.30
1043 1047 1.675641 CAGCTAGGGTTTTGCGCCT 60.676 57.895 4.18 0.00 0.00 5.52
1152 1165 1.229336 CTCCACCACCACCTCCTCT 60.229 63.158 0.00 0.00 0.00 3.69
1451 1464 1.153429 GAATCTTCCGACGGGGTGG 60.153 63.158 15.25 2.15 37.00 4.61
1452 1465 0.460284 CTGAATCTTCCGACGGGGTG 60.460 60.000 15.25 4.73 37.00 4.61
1453 1466 1.614241 CCTGAATCTTCCGACGGGGT 61.614 60.000 15.25 0.00 37.00 4.95
1719 1732 2.302445 CTCCACCATCTCATCCATCTCC 59.698 54.545 0.00 0.00 0.00 3.71
1797 1810 2.046507 GCAGCTCCACCACTGAGG 60.047 66.667 0.00 0.00 45.67 3.86
1798 1811 1.375652 CAGCAGCTCCACCACTGAG 60.376 63.158 0.00 0.00 35.90 3.35
2233 2246 2.104859 CAGCCTCTGCCACGACATG 61.105 63.158 0.00 0.00 38.69 3.21
2433 2446 8.218338 ACCATTCATTATCTTTCAGCTTGTAG 57.782 34.615 0.00 0.00 0.00 2.74
2442 2455 7.066766 AGTGCAGAGAACCATTCATTATCTTTC 59.933 37.037 0.00 0.00 0.00 2.62
3083 3096 5.193216 CGTACAGATCATCAAAAATGCTCG 58.807 41.667 0.00 0.00 0.00 5.03
3372 3385 2.237143 CTCATGAACCAGGGCTCTTGTA 59.763 50.000 0.00 0.00 0.00 2.41
3771 3784 4.202161 ACCATGTTCATATCCACTCTCGTC 60.202 45.833 0.00 0.00 0.00 4.20
4185 4198 1.734465 GTAGCTAACTGCAACTGCCAG 59.266 52.381 0.00 0.00 45.94 4.85
4217 4230 5.872635 ACAATCAACAATATGCAGAGAACG 58.127 37.500 0.00 0.00 0.00 3.95
4254 4267 5.127519 TGCAATTACCAGATGGAAAGGATTG 59.872 40.000 5.72 8.81 38.94 2.67
4405 4425 9.656040 GACATCTAGAACGTCCTATATTAGAGA 57.344 37.037 12.53 0.00 0.00 3.10
4406 4426 9.438228 TGACATCTAGAACGTCCTATATTAGAG 57.562 37.037 18.19 0.00 0.00 2.43
4423 4462 8.037758 AGGATGTTTTAGACACTTGACATCTAG 58.962 37.037 12.33 0.00 42.04 2.43
4431 4470 9.877178 ACTAAGATAGGATGTTTTAGACACTTG 57.123 33.333 0.00 0.00 42.04 3.16
4445 4484 5.145564 TCCCGCTGTAAACTAAGATAGGAT 58.854 41.667 0.00 0.00 0.00 3.24
4452 4491 8.658499 AATAATTACTCCCGCTGTAAACTAAG 57.342 34.615 0.00 0.00 34.20 2.18
4472 4511 8.677148 AGCCACGAAGTTGTAATCATAATAAT 57.323 30.769 0.00 0.00 41.61 1.28
4622 4671 9.765795 CTCTACCTTAACCCTGAAATATAACAG 57.234 37.037 0.00 0.00 0.00 3.16
4667 4839 2.435741 CGTGAGGACGTGAAGCTTC 58.564 57.895 19.89 19.89 40.91 3.86
4851 5072 3.632145 AGGCAGTTCGAATCAAACAAAGT 59.368 39.130 0.00 0.00 0.00 2.66
4900 5121 3.576550 TCCAAAATGCCTCCTTAAACACC 59.423 43.478 0.00 0.00 0.00 4.16
4944 5165 1.688772 CAAAGCTGCATCCAGGCTAT 58.311 50.000 1.02 0.00 39.54 2.97
4979 5200 7.200434 AGAATCTCTACCAATTTGAGGCTTA 57.800 36.000 0.00 0.00 0.00 3.09
5031 5263 1.750193 TCCATCGATTTGGAGGCAAC 58.250 50.000 3.55 0.00 40.90 4.17
5076 5308 0.463654 GAACATACCCTGCATGCCGA 60.464 55.000 16.68 0.00 0.00 5.54
5077 5309 0.747644 TGAACATACCCTGCATGCCG 60.748 55.000 16.68 9.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.