Multiple sequence alignment - TraesCS4B01G219900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G219900 chr4B 100.000 3076 0 0 1 3076 462537976 462534901 0.000000e+00 5681.0
1 TraesCS4B01G219900 chr4B 97.712 437 9 1 2641 3076 294746819 294746383 0.000000e+00 750.0
2 TraesCS4B01G219900 chr4B 98.706 309 3 1 2327 2635 462347487 462347180 5.800000e-152 547.0
3 TraesCS4B01G219900 chr4B 97.411 309 6 2 2324 2632 411687410 411687716 2.720000e-145 525.0
4 TraesCS4B01G219900 chr4B 92.836 335 17 5 2302 2635 543390610 543390282 2.150000e-131 479.0
5 TraesCS4B01G219900 chr4D 93.476 1119 49 13 781 1886 375389230 375388123 0.000000e+00 1640.0
6 TraesCS4B01G219900 chr4D 94.237 642 33 4 82 721 375395683 375395044 0.000000e+00 977.0
7 TraesCS4B01G219900 chr4D 90.566 159 13 2 2014 2171 7101660 7101817 3.110000e-50 209.0
8 TraesCS4B01G219900 chr4D 90.625 160 12 3 2024 2183 486790943 486790787 3.110000e-50 209.0
9 TraesCS4B01G219900 chr4D 97.468 79 2 0 1 79 375399292 375399214 5.350000e-28 135.0
10 TraesCS4B01G219900 chr4D 95.556 45 1 1 736 780 375394978 375394935 1.530000e-08 71.3
11 TraesCS4B01G219900 chr4A 93.964 878 33 4 1015 1886 88772512 88773375 0.000000e+00 1310.0
12 TraesCS4B01G219900 chr4A 93.243 518 16 5 6 519 88770387 88770889 0.000000e+00 745.0
13 TraesCS4B01G219900 chr4A 92.941 255 11 6 736 985 88772265 88772517 6.270000e-97 364.0
14 TraesCS4B01G219900 chr2A 86.728 761 86 15 2324 3076 645269 646022 0.000000e+00 832.0
15 TraesCS4B01G219900 chr6B 97.712 437 9 1 2641 3076 44673810 44673374 0.000000e+00 750.0
16 TraesCS4B01G219900 chr6B 97.483 437 10 1 2641 3076 57765015 57765451 0.000000e+00 745.0
17 TraesCS4B01G219900 chr6B 97.436 312 7 1 2324 2635 491995577 491995887 5.840000e-147 531.0
18 TraesCS4B01G219900 chr2B 97.712 437 9 1 2641 3076 82335584 82335148 0.000000e+00 750.0
19 TraesCS4B01G219900 chr2B 97.115 312 8 1 2324 2635 126664642 126664952 2.720000e-145 525.0
20 TraesCS4B01G219900 chr2B 96.519 316 10 1 2320 2635 486893405 486893719 3.510000e-144 521.0
21 TraesCS4B01G219900 chr1B 97.712 437 9 1 2641 3076 132009897 132010333 0.000000e+00 750.0
22 TraesCS4B01G219900 chr1B 92.492 333 18 6 2307 2635 157914294 157914623 1.290000e-128 470.0
23 TraesCS4B01G219900 chr1B 92.145 331 18 6 2308 2635 62581138 62580813 7.770000e-126 460.0
24 TraesCS4B01G219900 chr1B 94.488 127 7 0 2197 2323 515051878 515052004 2.420000e-46 196.0
25 TraesCS4B01G219900 chr7B 97.483 437 10 1 2641 3076 522578254 522578690 0.000000e+00 745.0
26 TraesCS4B01G219900 chr7B 93.155 336 17 4 2305 2635 729034387 729034721 3.560000e-134 488.0
27 TraesCS4B01G219900 chr3B 97.483 437 10 1 2641 3076 138926253 138926689 0.000000e+00 745.0
28 TraesCS4B01G219900 chr3B 97.483 437 10 1 2641 3076 760695710 760696146 0.000000e+00 745.0
29 TraesCS4B01G219900 chr3B 87.560 209 19 5 1967 2171 691354110 691353905 5.130000e-58 235.0
30 TraesCS4B01G219900 chrUn 97.411 309 7 1 2327 2635 220842476 220842783 2.720000e-145 525.0
31 TraesCS4B01G219900 chrUn 91.195 159 12 2 2014 2171 92186769 92186926 6.680000e-52 215.0
32 TraesCS4B01G219900 chr5B 97.411 309 7 1 2327 2635 419262143 419261836 2.720000e-145 525.0
33 TraesCS4B01G219900 chr5B 97.115 312 8 1 2324 2635 703315298 703315608 2.720000e-145 525.0
34 TraesCS4B01G219900 chr5B 93.030 330 20 3 2306 2635 246532584 246532910 2.150000e-131 479.0
35 TraesCS4B01G219900 chr5B 91.710 193 8 5 1996 2183 387158426 387158615 8.460000e-66 261.0
36 TraesCS4B01G219900 chr6D 92.705 329 20 4 2307 2635 329476605 329476281 3.590000e-129 472.0
37 TraesCS4B01G219900 chr6D 91.534 189 10 4 1995 2178 12824375 12824562 3.940000e-64 255.0
38 TraesCS4B01G219900 chr6D 92.398 171 10 3 2013 2183 441641638 441641471 1.100000e-59 241.0
39 TraesCS4B01G219900 chr6D 89.474 171 15 3 2014 2183 143085275 143085107 2.400000e-51 213.0
40 TraesCS4B01G219900 chr6D 87.978 183 14 5 2024 2199 300325822 300325641 3.110000e-50 209.0
41 TraesCS4B01G219900 chr6D 96.063 127 5 0 2197 2323 311819280 311819406 1.120000e-49 207.0
42 TraesCS4B01G219900 chr6D 95.238 126 6 0 2197 2322 458536381 458536256 1.870000e-47 200.0
43 TraesCS4B01G219900 chr6D 91.156 147 12 1 2025 2171 412057853 412057708 6.730000e-47 198.0
44 TraesCS4B01G219900 chr6D 86.413 184 16 6 1995 2171 411994710 411994891 3.130000e-45 193.0
45 TraesCS4B01G219900 chr6D 90.210 143 13 1 2024 2166 417885398 417885257 5.240000e-43 185.0
46 TraesCS4B01G219900 chr6D 86.550 171 17 5 2024 2192 345291614 345291780 1.880000e-42 183.0
47 TraesCS4B01G219900 chr6D 89.706 136 7 5 1995 2125 311814447 311814580 1.900000e-37 167.0
48 TraesCS4B01G219900 chr7A 91.892 333 18 7 2307 2635 64511346 64511019 1.010000e-124 457.0
49 TraesCS4B01G219900 chr7A 91.489 329 23 5 2304 2631 80907887 80907563 6.050000e-122 448.0
50 TraesCS4B01G219900 chr7A 84.483 232 22 11 1970 2192 719929922 719929696 1.860000e-52 217.0
51 TraesCS4B01G219900 chr1A 92.880 309 18 4 2327 2635 489968135 489967831 2.180000e-121 446.0
52 TraesCS4B01G219900 chr1A 90.710 183 10 5 1995 2171 408483614 408483433 1.430000e-58 237.0
53 TraesCS4B01G219900 chr1A 93.082 159 9 2 2013 2171 535551329 535551485 6.630000e-57 231.0
54 TraesCS4B01G219900 chr1A 88.021 192 19 4 1995 2184 372467226 372467037 1.110000e-54 224.0
55 TraesCS4B01G219900 chr1A 85.514 214 20 7 1996 2202 592142790 592142999 2.400000e-51 213.0
56 TraesCS4B01G219900 chr1A 95.276 127 5 1 2198 2323 372466980 372466854 1.870000e-47 200.0
57 TraesCS4B01G219900 chr3A 90.476 210 14 5 1995 2199 594035506 594035714 3.910000e-69 272.0
58 TraesCS4B01G219900 chr3A 91.257 183 12 4 1999 2178 644833850 644834031 2.370000e-61 246.0
59 TraesCS4B01G219900 chr3A 89.231 195 12 6 1995 2183 729702662 729702853 5.130000e-58 235.0
60 TraesCS4B01G219900 chr3A 87.923 207 10 9 1995 2196 697755831 697756027 2.390000e-56 230.0
61 TraesCS4B01G219900 chr3A 94.488 127 7 0 2197 2323 534198576 534198450 2.420000e-46 196.0
62 TraesCS4B01G219900 chr3A 94.488 127 7 0 2197 2323 697756083 697756209 2.420000e-46 196.0
63 TraesCS4B01G219900 chr7D 92.308 182 8 3 1995 2171 154399929 154400109 1.420000e-63 254.0
64 TraesCS4B01G219900 chr7D 85.990 207 18 7 1984 2183 104361707 104361505 8.640000e-51 211.0
65 TraesCS4B01G219900 chr7D 93.750 128 8 0 2197 2324 401784268 401784395 3.130000e-45 193.0
66 TraesCS4B01G219900 chr5D 90.722 194 11 6 1995 2183 417609190 417609381 5.090000e-63 252.0
67 TraesCS4B01G219900 chr5D 89.418 189 14 5 1999 2183 486863648 486863462 1.840000e-57 233.0
68 TraesCS4B01G219900 chr5D 89.385 179 12 5 1999 2171 188387881 188387704 5.160000e-53 219.0
69 TraesCS4B01G219900 chr5D 86.735 196 14 9 1996 2183 117766504 117766695 1.120000e-49 207.0
70 TraesCS4B01G219900 chr5D 95.276 127 6 0 2197 2323 474817512 474817638 5.200000e-48 202.0
71 TraesCS4B01G219900 chr6A 91.160 181 11 5 1995 2171 459842340 459842519 1.100000e-59 241.0
72 TraesCS4B01G219900 chr6A 89.474 190 12 6 2000 2183 224609696 224609509 1.840000e-57 233.0
73 TraesCS4B01G219900 chr6A 87.629 194 15 7 1996 2183 615125244 615125434 1.860000e-52 217.0
74 TraesCS4B01G219900 chr2D 92.000 175 9 3 2026 2199 29187197 29187027 1.100000e-59 241.0
75 TraesCS4B01G219900 chr2D 94.488 127 7 0 2197 2323 651565290 651565164 2.420000e-46 196.0
76 TraesCS4B01G219900 chr3D 91.250 160 12 2 2013 2171 482492017 482491859 1.860000e-52 217.0
77 TraesCS4B01G219900 chr3D 87.778 180 19 3 2000 2178 565711582 565711405 1.120000e-49 207.0
78 TraesCS4B01G219900 chr1D 85.326 184 17 6 2024 2199 398950322 398950141 6.780000e-42 182.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G219900 chr4B 462534901 462537976 3075 True 5681.000000 5681 100.000000 1 3076 1 chr4B.!!$R3 3075
1 TraesCS4B01G219900 chr4D 375388123 375389230 1107 True 1640.000000 1640 93.476000 781 1886 1 chr4D.!!$R1 1105
2 TraesCS4B01G219900 chr4D 375394935 375399292 4357 True 394.433333 977 95.753667 1 780 3 chr4D.!!$R3 779
3 TraesCS4B01G219900 chr4A 88770387 88773375 2988 False 806.333333 1310 93.382667 6 1886 3 chr4A.!!$F1 1880
4 TraesCS4B01G219900 chr2A 645269 646022 753 False 832.000000 832 86.728000 2324 3076 1 chr2A.!!$F1 752

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
302 3835 0.040958 CGTGTTTGAGTGCAGGCTTC 60.041 55.0 0.0 0.0 0.0 3.86 F
1774 6632 0.106708 GCTGATGGCGGTGGAAGATA 59.893 55.0 0.0 0.0 0.0 1.98 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1959 6817 0.097674 GACGCGCAAAAGCTCATGAT 59.902 50.0 5.73 0.0 34.4 2.45 R
2795 7656 0.035881 ATGCATGATCCCGCTACCAG 59.964 55.0 0.00 0.0 0.0 4.00 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 6.177610 TGGTAGTCCTTGGAATATTGTTGTC 58.822 40.000 0.00 0.00 34.23 3.18
101 3630 7.362574 GGTTATGTACTTATGTGTTTGGCATGT 60.363 37.037 0.00 0.00 0.00 3.21
283 3815 9.766277 CTCTTCTTTGTTGAATTACATCTTAGC 57.234 33.333 0.00 0.00 0.00 3.09
302 3835 0.040958 CGTGTTTGAGTGCAGGCTTC 60.041 55.000 0.00 0.00 0.00 3.86
433 3966 9.590451 CAATTTCAGTTTTACTATCATGGCAAT 57.410 29.630 0.00 0.00 0.00 3.56
571 5355 9.866655 TTTTTCTACTAATCAATATGGCATCCT 57.133 29.630 1.65 0.00 0.00 3.24
594 5378 6.265422 CCTTTAGTTTTTCATTCCCTGACACT 59.735 38.462 0.00 0.00 32.17 3.55
606 5390 8.869109 TCATTCCCTGACACTTCAAAATTTATT 58.131 29.630 0.00 0.00 0.00 1.40
610 5394 8.147704 TCCCTGACACTTCAAAATTTATTTTCC 58.852 33.333 0.00 0.00 37.86 3.13
626 5410 4.634184 TTTTCCGTTTTTCGAACCATGA 57.366 36.364 0.00 0.00 42.86 3.07
679 5463 8.630054 ACAGGTTTTATTAGTCATAGCAAACA 57.370 30.769 0.00 0.00 0.00 2.83
692 5476 6.873605 GTCATAGCAAACAGGGCTTTATTTTT 59.126 34.615 0.00 0.00 42.62 1.94
695 5479 3.120683 GCAAACAGGGCTTTATTTTTCGC 60.121 43.478 0.00 0.00 0.00 4.70
721 5507 0.752054 TTCACAGCAAAAAGGCCTGG 59.248 50.000 5.69 0.00 0.00 4.45
732 5531 3.726144 GGCCTGGGCTTCTGCTCT 61.726 66.667 13.80 0.00 41.13 4.09
814 5650 6.594159 TCATCGATCTGTTCCTTTTAAACTCC 59.406 38.462 0.00 0.00 0.00 3.85
815 5651 4.927425 TCGATCTGTTCCTTTTAAACTCCG 59.073 41.667 0.00 0.00 0.00 4.63
839 5675 3.621268 TCTGTGTTGAATATGTAAGGCGC 59.379 43.478 0.00 0.00 0.00 6.53
1007 5852 0.548989 TGCGGCCTGTACCCATAAAT 59.451 50.000 0.00 0.00 0.00 1.40
1008 5853 1.769465 TGCGGCCTGTACCCATAAATA 59.231 47.619 0.00 0.00 0.00 1.40
1009 5854 2.172930 TGCGGCCTGTACCCATAAATAA 59.827 45.455 0.00 0.00 0.00 1.40
1061 5910 2.361992 CATTGAGCCCCTGCAGCA 60.362 61.111 8.66 0.00 41.13 4.41
1062 5911 2.044252 ATTGAGCCCCTGCAGCAG 60.044 61.111 16.23 16.23 41.13 4.24
1484 6333 4.742201 GCGCTGGTGCTCGGAGAA 62.742 66.667 9.69 0.00 34.09 2.87
1532 6381 0.530288 AGAAGAAGAGTCGCCTGAGC 59.470 55.000 0.00 0.00 0.00 4.26
1620 6469 2.875188 GAGAGGGTCGAGCTTCAGA 58.125 57.895 25.80 0.00 0.00 3.27
1666 6515 2.485122 CCGAAAGCCGACCAATGC 59.515 61.111 0.00 0.00 41.76 3.56
1742 6598 0.317603 GCCGATGATCTGTGCATTGC 60.318 55.000 0.46 0.46 0.00 3.56
1774 6632 0.106708 GCTGATGGCGGTGGAAGATA 59.893 55.000 0.00 0.00 0.00 1.98
1787 6645 3.071602 GTGGAAGATAGCCTGCCTGATTA 59.928 47.826 0.00 0.00 41.61 1.75
1886 6744 8.248945 ACTCTTATCAGCCAGAAATTTGATTTG 58.751 33.333 0.00 0.00 32.83 2.32
1887 6745 8.352137 TCTTATCAGCCAGAAATTTGATTTGA 57.648 30.769 0.00 0.00 32.83 2.69
1888 6746 8.974238 TCTTATCAGCCAGAAATTTGATTTGAT 58.026 29.630 0.00 1.75 32.83 2.57
1889 6747 8.936070 TTATCAGCCAGAAATTTGATTTGATG 57.064 30.769 0.00 0.00 32.83 3.07
1890 6748 5.726397 TCAGCCAGAAATTTGATTTGATGG 58.274 37.500 0.00 8.71 38.12 3.51
1891 6749 4.873827 CAGCCAGAAATTTGATTTGATGGG 59.126 41.667 0.00 0.00 36.73 4.00
1892 6750 3.624410 GCCAGAAATTTGATTTGATGGGC 59.376 43.478 0.00 0.00 36.73 5.36
1893 6751 3.866910 CCAGAAATTTGATTTGATGGGCG 59.133 43.478 0.00 0.00 34.45 6.13
1894 6752 3.866910 CAGAAATTTGATTTGATGGGCGG 59.133 43.478 0.00 0.00 31.47 6.13
1895 6753 2.314323 AATTTGATTTGATGGGCGGC 57.686 45.000 0.00 0.00 0.00 6.53
1896 6754 1.488390 ATTTGATTTGATGGGCGGCT 58.512 45.000 9.56 0.00 0.00 5.52
1897 6755 1.265236 TTTGATTTGATGGGCGGCTT 58.735 45.000 9.56 0.00 0.00 4.35
1898 6756 1.265236 TTGATTTGATGGGCGGCTTT 58.735 45.000 9.56 0.00 0.00 3.51
1899 6757 0.817013 TGATTTGATGGGCGGCTTTC 59.183 50.000 9.56 6.84 0.00 2.62
1900 6758 1.106285 GATTTGATGGGCGGCTTTCT 58.894 50.000 9.56 0.00 0.00 2.52
1901 6759 1.066152 GATTTGATGGGCGGCTTTCTC 59.934 52.381 9.56 1.36 0.00 2.87
1902 6760 0.965363 TTTGATGGGCGGCTTTCTCC 60.965 55.000 9.56 0.00 0.00 3.71
1903 6761 1.852157 TTGATGGGCGGCTTTCTCCT 61.852 55.000 9.56 0.00 0.00 3.69
1904 6762 1.821332 GATGGGCGGCTTTCTCCTG 60.821 63.158 9.56 0.00 0.00 3.86
1905 6763 3.350031 ATGGGCGGCTTTCTCCTGG 62.350 63.158 9.56 0.00 0.00 4.45
1907 6765 4.722700 GGCGGCTTTCTCCTGGCA 62.723 66.667 0.00 0.00 0.00 4.92
1908 6766 2.672996 GCGGCTTTCTCCTGGCAA 60.673 61.111 0.00 0.00 0.00 4.52
1909 6767 2.694760 GCGGCTTTCTCCTGGCAAG 61.695 63.158 0.00 0.00 0.00 4.01
1910 6768 2.042831 CGGCTTTCTCCTGGCAAGG 61.043 63.158 0.00 0.00 46.06 3.61
1911 6769 2.346541 GGCTTTCTCCTGGCAAGGC 61.347 63.158 0.56 9.72 44.11 4.35
1912 6770 1.303970 GCTTTCTCCTGGCAAGGCT 60.304 57.895 0.56 0.00 44.11 4.58
1913 6771 0.897401 GCTTTCTCCTGGCAAGGCTT 60.897 55.000 0.56 0.00 44.11 4.35
1914 6772 1.614317 GCTTTCTCCTGGCAAGGCTTA 60.614 52.381 0.56 0.00 44.11 3.09
1915 6773 2.363683 CTTTCTCCTGGCAAGGCTTAG 58.636 52.381 0.56 0.00 44.11 2.18
1916 6774 1.656587 TTCTCCTGGCAAGGCTTAGA 58.343 50.000 0.56 0.00 44.11 2.10
1917 6775 1.198713 TCTCCTGGCAAGGCTTAGAG 58.801 55.000 0.56 0.00 44.11 2.43
1918 6776 0.463474 CTCCTGGCAAGGCTTAGAGC 60.463 60.000 0.56 0.00 44.11 4.09
1919 6777 1.200760 TCCTGGCAAGGCTTAGAGCA 61.201 55.000 0.56 0.00 44.75 4.26
1920 6778 0.106819 CCTGGCAAGGCTTAGAGCAT 60.107 55.000 0.00 0.00 44.75 3.79
1921 6779 1.307097 CTGGCAAGGCTTAGAGCATC 58.693 55.000 0.00 0.00 44.75 3.91
1922 6780 4.397061 CCTGGCAAGGCTTAGAGCATCT 62.397 54.545 0.00 0.00 44.75 2.90
1934 6792 1.927895 GAGCATCTCCAACTACCACG 58.072 55.000 0.00 0.00 0.00 4.94
1935 6793 0.108138 AGCATCTCCAACTACCACGC 60.108 55.000 0.00 0.00 0.00 5.34
1936 6794 0.108138 GCATCTCCAACTACCACGCT 60.108 55.000 0.00 0.00 0.00 5.07
1937 6795 1.136305 GCATCTCCAACTACCACGCTA 59.864 52.381 0.00 0.00 0.00 4.26
1938 6796 2.418197 GCATCTCCAACTACCACGCTAA 60.418 50.000 0.00 0.00 0.00 3.09
1939 6797 3.857052 CATCTCCAACTACCACGCTAAA 58.143 45.455 0.00 0.00 0.00 1.85
1940 6798 4.250464 CATCTCCAACTACCACGCTAAAA 58.750 43.478 0.00 0.00 0.00 1.52
1941 6799 4.339872 TCTCCAACTACCACGCTAAAAA 57.660 40.909 0.00 0.00 0.00 1.94
1962 6820 6.642707 AAAAGTGTTTACATTCCGGAATCA 57.357 33.333 26.95 17.93 0.00 2.57
1963 6821 6.834168 AAAGTGTTTACATTCCGGAATCAT 57.166 33.333 26.95 19.42 0.00 2.45
1964 6822 5.818136 AGTGTTTACATTCCGGAATCATG 57.182 39.130 26.95 19.67 0.00 3.07
1965 6823 5.496556 AGTGTTTACATTCCGGAATCATGA 58.503 37.500 26.95 12.05 0.00 3.07
1966 6824 5.586243 AGTGTTTACATTCCGGAATCATGAG 59.414 40.000 26.95 17.22 0.00 2.90
1967 6825 4.335315 TGTTTACATTCCGGAATCATGAGC 59.665 41.667 26.95 16.04 0.00 4.26
1968 6826 4.422073 TTACATTCCGGAATCATGAGCT 57.578 40.909 26.95 1.19 0.00 4.09
1969 6827 3.287867 ACATTCCGGAATCATGAGCTT 57.712 42.857 26.95 0.36 0.00 3.74
1970 6828 3.624777 ACATTCCGGAATCATGAGCTTT 58.375 40.909 26.95 0.00 0.00 3.51
1971 6829 4.019174 ACATTCCGGAATCATGAGCTTTT 58.981 39.130 26.95 0.00 0.00 2.27
1972 6830 4.142315 ACATTCCGGAATCATGAGCTTTTG 60.142 41.667 26.95 14.78 0.00 2.44
1983 6841 3.411351 GCTTTTGCGCGTCTCGGA 61.411 61.111 8.43 0.00 38.94 4.55
1984 6842 2.772189 CTTTTGCGCGTCTCGGAG 59.228 61.111 8.43 0.00 40.33 4.63
1985 6843 3.354499 CTTTTGCGCGTCTCGGAGC 62.354 63.158 8.43 0.00 40.33 4.70
2005 6863 4.953010 TGGCTTCAGGCGCTGCAA 62.953 61.111 7.64 0.00 44.42 4.08
2006 6864 3.673484 GGCTTCAGGCGCTGCAAA 61.673 61.111 7.64 0.00 42.94 3.68
2007 6865 2.336088 GCTTCAGGCGCTGCAAAA 59.664 55.556 7.64 0.00 0.00 2.44
2008 6866 1.300080 GCTTCAGGCGCTGCAAAAA 60.300 52.632 7.64 0.00 0.00 1.94
2025 6883 2.427232 AAAACTACGCGCTCAGTACA 57.573 45.000 5.73 0.00 0.00 2.90
2026 6884 2.427232 AAACTACGCGCTCAGTACAA 57.573 45.000 5.73 0.00 0.00 2.41
2027 6885 2.427232 AACTACGCGCTCAGTACAAA 57.573 45.000 5.73 0.00 0.00 2.83
2028 6886 1.694639 ACTACGCGCTCAGTACAAAC 58.305 50.000 5.73 0.00 0.00 2.93
2029 6887 1.001048 ACTACGCGCTCAGTACAAACA 60.001 47.619 5.73 0.00 0.00 2.83
2030 6888 2.055838 CTACGCGCTCAGTACAAACAA 58.944 47.619 5.73 0.00 0.00 2.83
2031 6889 0.580104 ACGCGCTCAGTACAAACAAC 59.420 50.000 5.73 0.00 0.00 3.32
2032 6890 0.579630 CGCGCTCAGTACAAACAACA 59.420 50.000 5.56 0.00 0.00 3.33
2033 6891 1.194547 CGCGCTCAGTACAAACAACAT 59.805 47.619 5.56 0.00 0.00 2.71
2034 6892 2.410392 CGCGCTCAGTACAAACAACATA 59.590 45.455 5.56 0.00 0.00 2.29
2035 6893 3.062099 CGCGCTCAGTACAAACAACATAT 59.938 43.478 5.56 0.00 0.00 1.78
2036 6894 4.334443 GCGCTCAGTACAAACAACATATG 58.666 43.478 0.00 0.00 0.00 1.78
2037 6895 4.334443 CGCTCAGTACAAACAACATATGC 58.666 43.478 1.58 0.00 0.00 3.14
2038 6896 4.142924 CGCTCAGTACAAACAACATATGCA 60.143 41.667 1.58 0.00 0.00 3.96
2039 6897 5.088739 GCTCAGTACAAACAACATATGCAC 58.911 41.667 1.58 0.00 0.00 4.57
2040 6898 5.106555 GCTCAGTACAAACAACATATGCACT 60.107 40.000 1.58 0.00 0.00 4.40
2041 6899 6.480524 TCAGTACAAACAACATATGCACTC 57.519 37.500 1.58 0.00 0.00 3.51
2042 6900 5.411361 TCAGTACAAACAACATATGCACTCC 59.589 40.000 1.58 0.00 0.00 3.85
2043 6901 5.181056 CAGTACAAACAACATATGCACTCCA 59.819 40.000 1.58 0.00 0.00 3.86
2044 6902 5.767665 AGTACAAACAACATATGCACTCCAA 59.232 36.000 1.58 0.00 0.00 3.53
2045 6903 5.528043 ACAAACAACATATGCACTCCAAA 57.472 34.783 1.58 0.00 0.00 3.28
2046 6904 5.288804 ACAAACAACATATGCACTCCAAAC 58.711 37.500 1.58 0.00 0.00 2.93
2047 6905 5.163468 ACAAACAACATATGCACTCCAAACA 60.163 36.000 1.58 0.00 0.00 2.83
2048 6906 4.503741 ACAACATATGCACTCCAAACAC 57.496 40.909 1.58 0.00 0.00 3.32
2049 6907 3.888323 ACAACATATGCACTCCAAACACA 59.112 39.130 1.58 0.00 0.00 3.72
2050 6908 4.340666 ACAACATATGCACTCCAAACACAA 59.659 37.500 1.58 0.00 0.00 3.33
2051 6909 4.503741 ACATATGCACTCCAAACACAAC 57.496 40.909 1.58 0.00 0.00 3.32
2052 6910 3.255642 ACATATGCACTCCAAACACAACC 59.744 43.478 1.58 0.00 0.00 3.77
2053 6911 1.039856 ATGCACTCCAAACACAACCC 58.960 50.000 0.00 0.00 0.00 4.11
2054 6912 0.323816 TGCACTCCAAACACAACCCA 60.324 50.000 0.00 0.00 0.00 4.51
2055 6913 0.102300 GCACTCCAAACACAACCCAC 59.898 55.000 0.00 0.00 0.00 4.61
2056 6914 0.380378 CACTCCAAACACAACCCACG 59.620 55.000 0.00 0.00 0.00 4.94
2057 6915 0.253610 ACTCCAAACACAACCCACGA 59.746 50.000 0.00 0.00 0.00 4.35
2058 6916 1.340211 ACTCCAAACACAACCCACGAA 60.340 47.619 0.00 0.00 0.00 3.85
2059 6917 1.333619 CTCCAAACACAACCCACGAAG 59.666 52.381 0.00 0.00 0.00 3.79
2060 6918 1.065345 TCCAAACACAACCCACGAAGA 60.065 47.619 0.00 0.00 0.00 2.87
2061 6919 1.953686 CCAAACACAACCCACGAAGAT 59.046 47.619 0.00 0.00 0.00 2.40
2062 6920 2.031157 CCAAACACAACCCACGAAGATC 60.031 50.000 0.00 0.00 0.00 2.75
2063 6921 2.616376 CAAACACAACCCACGAAGATCA 59.384 45.455 0.00 0.00 0.00 2.92
2064 6922 2.631160 ACACAACCCACGAAGATCAA 57.369 45.000 0.00 0.00 0.00 2.57
2065 6923 2.925724 ACACAACCCACGAAGATCAAA 58.074 42.857 0.00 0.00 0.00 2.69
2066 6924 2.616842 ACACAACCCACGAAGATCAAAC 59.383 45.455 0.00 0.00 0.00 2.93
2067 6925 2.616376 CACAACCCACGAAGATCAAACA 59.384 45.455 0.00 0.00 0.00 2.83
2068 6926 3.253188 CACAACCCACGAAGATCAAACAT 59.747 43.478 0.00 0.00 0.00 2.71
2069 6927 4.454161 CACAACCCACGAAGATCAAACATA 59.546 41.667 0.00 0.00 0.00 2.29
2070 6928 5.049060 CACAACCCACGAAGATCAAACATAA 60.049 40.000 0.00 0.00 0.00 1.90
2071 6929 5.533154 ACAACCCACGAAGATCAAACATAAA 59.467 36.000 0.00 0.00 0.00 1.40
2072 6930 5.622770 ACCCACGAAGATCAAACATAAAC 57.377 39.130 0.00 0.00 0.00 2.01
2073 6931 5.067273 ACCCACGAAGATCAAACATAAACA 58.933 37.500 0.00 0.00 0.00 2.83
2074 6932 5.533154 ACCCACGAAGATCAAACATAAACAA 59.467 36.000 0.00 0.00 0.00 2.83
2075 6933 6.039941 ACCCACGAAGATCAAACATAAACAAA 59.960 34.615 0.00 0.00 0.00 2.83
2076 6934 6.920758 CCCACGAAGATCAAACATAAACAAAA 59.079 34.615 0.00 0.00 0.00 2.44
2077 6935 7.598493 CCCACGAAGATCAAACATAAACAAAAT 59.402 33.333 0.00 0.00 0.00 1.82
2078 6936 9.619316 CCACGAAGATCAAACATAAACAAAATA 57.381 29.630 0.00 0.00 0.00 1.40
2156 7014 8.795786 TCTTGCAATACAACAAATAGTTCAAC 57.204 30.769 0.00 0.00 38.74 3.18
2157 7015 8.409371 TCTTGCAATACAACAAATAGTTCAACA 58.591 29.630 0.00 0.00 38.74 3.33
2158 7016 8.932945 TTGCAATACAACAAATAGTTCAACAA 57.067 26.923 0.00 0.00 38.74 2.83
2159 7017 9.539825 TTGCAATACAACAAATAGTTCAACAAT 57.460 25.926 0.00 0.00 38.74 2.71
2200 7058 8.745590 ACAAGATCAAACATCAAATCATGATCA 58.254 29.630 9.06 0.00 45.91 2.92
2201 7059 9.750125 CAAGATCAAACATCAAATCATGATCAT 57.250 29.630 9.06 1.18 45.91 2.45
2202 7060 9.967346 AAGATCAAACATCAAATCATGATCATC 57.033 29.630 9.06 0.00 45.91 2.92
2203 7061 9.131791 AGATCAAACATCAAATCATGATCATCA 57.868 29.630 9.06 0.00 45.91 3.07
2204 7062 9.914131 GATCAAACATCAAATCATGATCATCAT 57.086 29.630 9.06 0.00 45.91 2.45
2214 7072 3.624900 CATGATCATCATGTGTTTCGGC 58.375 45.455 18.31 0.00 46.80 5.54
2215 7073 2.709213 TGATCATCATGTGTTTCGGCA 58.291 42.857 0.00 0.00 0.00 5.69
2216 7074 2.419673 TGATCATCATGTGTTTCGGCAC 59.580 45.455 0.00 0.00 39.65 5.01
2217 7075 6.259134 ATGATCATCATGTGTTTCGGCACG 62.259 45.833 1.18 0.00 45.20 5.34
2229 7087 2.404789 GGCACGTCGAATGGCATG 59.595 61.111 16.84 0.00 42.03 4.06
2230 7088 2.106074 GGCACGTCGAATGGCATGA 61.106 57.895 16.84 0.00 42.03 3.07
2231 7089 1.439353 GGCACGTCGAATGGCATGAT 61.439 55.000 16.84 0.00 42.03 2.45
2232 7090 1.217001 GCACGTCGAATGGCATGATA 58.783 50.000 0.00 0.00 0.00 2.15
2233 7091 1.070577 GCACGTCGAATGGCATGATAC 60.071 52.381 0.00 0.00 0.00 2.24
2234 7092 1.190103 CACGTCGAATGGCATGATACG 59.810 52.381 20.38 20.38 35.17 3.06
2235 7093 1.066454 ACGTCGAATGGCATGATACGA 59.934 47.619 25.68 19.33 33.40 3.43
2236 7094 1.716050 CGTCGAATGGCATGATACGAG 59.284 52.381 18.39 10.19 0.00 4.18
2237 7095 2.061773 GTCGAATGGCATGATACGAGG 58.938 52.381 15.49 0.00 0.00 4.63
2238 7096 1.000843 TCGAATGGCATGATACGAGGG 59.999 52.381 0.00 0.00 0.00 4.30
2239 7097 1.000843 CGAATGGCATGATACGAGGGA 59.999 52.381 0.00 0.00 0.00 4.20
2240 7098 2.547855 CGAATGGCATGATACGAGGGAA 60.548 50.000 0.00 0.00 0.00 3.97
2241 7099 2.550830 ATGGCATGATACGAGGGAAC 57.449 50.000 0.00 0.00 0.00 3.62
2242 7100 1.199615 TGGCATGATACGAGGGAACA 58.800 50.000 0.00 0.00 0.00 3.18
2243 7101 1.557371 TGGCATGATACGAGGGAACAA 59.443 47.619 0.00 0.00 0.00 2.83
2244 7102 2.026729 TGGCATGATACGAGGGAACAAA 60.027 45.455 0.00 0.00 0.00 2.83
2245 7103 3.214328 GGCATGATACGAGGGAACAAAT 58.786 45.455 0.00 0.00 0.00 2.32
2246 7104 3.251004 GGCATGATACGAGGGAACAAATC 59.749 47.826 0.00 0.00 0.00 2.17
2247 7105 3.059597 GCATGATACGAGGGAACAAATCG 60.060 47.826 0.00 0.00 42.04 3.34
2248 7106 3.173668 TGATACGAGGGAACAAATCGG 57.826 47.619 0.00 0.00 40.67 4.18
2249 7107 2.159014 TGATACGAGGGAACAAATCGGG 60.159 50.000 0.00 0.00 40.67 5.14
2250 7108 0.108041 TACGAGGGAACAAATCGGGC 60.108 55.000 0.00 0.00 40.67 6.13
2251 7109 2.112815 CGAGGGAACAAATCGGGCC 61.113 63.158 0.00 0.00 32.93 5.80
2252 7110 1.001393 GAGGGAACAAATCGGGCCA 60.001 57.895 4.39 0.00 0.00 5.36
2253 7111 1.304134 AGGGAACAAATCGGGCCAC 60.304 57.895 4.39 0.00 0.00 5.01
2254 7112 1.304134 GGGAACAAATCGGGCCACT 60.304 57.895 4.39 0.00 0.00 4.00
2255 7113 1.313091 GGGAACAAATCGGGCCACTC 61.313 60.000 4.39 0.00 0.00 3.51
2256 7114 0.322546 GGAACAAATCGGGCCACTCT 60.323 55.000 4.39 0.00 0.00 3.24
2257 7115 1.087501 GAACAAATCGGGCCACTCTC 58.912 55.000 4.39 0.00 0.00 3.20
2258 7116 0.673644 AACAAATCGGGCCACTCTCG 60.674 55.000 4.39 0.00 0.00 4.04
2259 7117 2.125106 AAATCGGGCCACTCTCGC 60.125 61.111 4.39 0.00 0.00 5.03
2260 7118 2.954684 AAATCGGGCCACTCTCGCA 61.955 57.895 4.39 0.00 0.00 5.10
2261 7119 2.859273 AAATCGGGCCACTCTCGCAG 62.859 60.000 4.39 0.00 0.00 5.18
2266 7124 4.828925 GCCACTCTCGCAGCCCTC 62.829 72.222 0.00 0.00 0.00 4.30
2267 7125 4.154347 CCACTCTCGCAGCCCTCC 62.154 72.222 0.00 0.00 0.00 4.30
2268 7126 4.504916 CACTCTCGCAGCCCTCCG 62.505 72.222 0.00 0.00 0.00 4.63
2288 7146 3.188786 GCACTCGCACGGGATGTC 61.189 66.667 0.00 0.00 38.36 3.06
2289 7147 2.509336 CACTCGCACGGGATGTCC 60.509 66.667 0.00 0.00 0.00 4.02
2302 7160 3.118905 GGATGTCCCAAGAGCTCATAC 57.881 52.381 17.77 6.73 34.14 2.39
2303 7161 2.703007 GGATGTCCCAAGAGCTCATACT 59.297 50.000 17.77 0.00 34.14 2.12
2304 7162 3.494048 GGATGTCCCAAGAGCTCATACTG 60.494 52.174 17.77 7.28 34.14 2.74
2305 7163 2.820178 TGTCCCAAGAGCTCATACTGA 58.180 47.619 17.77 2.66 0.00 3.41
2306 7164 2.762887 TGTCCCAAGAGCTCATACTGAG 59.237 50.000 17.77 0.00 46.90 3.35
2325 7183 9.854668 ATACTGAGAGTAGTCTAAATCTTGCTA 57.145 33.333 0.00 0.00 33.66 3.49
2331 7189 8.637986 AGAGTAGTCTAAATCTTGCTATTGGAG 58.362 37.037 0.00 0.00 0.00 3.86
2444 7302 4.324135 CGGAAATCGTAAATACACGTGTGA 59.676 41.667 30.83 18.15 42.51 3.58
2455 7313 7.766219 AAATACACGTGTGAATACATAGACC 57.234 36.000 30.83 0.00 39.39 3.85
2459 7317 4.926832 CACGTGTGAATACATAGACCACAA 59.073 41.667 7.58 0.00 39.13 3.33
2472 7330 2.303022 AGACCACAACATGTCCCTAGTG 59.697 50.000 0.00 3.77 31.76 2.74
2479 7337 1.007721 ACATGTCCCTAGTGAGCCTCT 59.992 52.381 0.00 0.00 0.00 3.69
2480 7338 2.245028 ACATGTCCCTAGTGAGCCTCTA 59.755 50.000 0.00 0.00 0.00 2.43
2507 7365 7.745620 TGACTAGCTCGTTGATCAATAGATA 57.254 36.000 19.51 16.84 33.72 1.98
2510 7368 7.812648 ACTAGCTCGTTGATCAATAGATAGTC 58.187 38.462 28.30 15.07 35.44 2.59
2512 7370 7.225784 AGCTCGTTGATCAATAGATAGTCAT 57.774 36.000 19.51 2.79 33.72 3.06
2534 7392 7.552687 GTCATGGTTTCCTGACTATGAACATTA 59.447 37.037 5.77 0.00 45.25 1.90
2551 7409 7.630026 TGAACATTAGATGTCATTGATAACGC 58.370 34.615 0.00 0.00 44.07 4.84
2556 7414 3.670523 AGATGTCATTGATAACGCGATCG 59.329 43.478 15.93 11.69 42.43 3.69
2601 7459 2.026262 GGACAAGACCCAATCCTAAGCA 60.026 50.000 0.00 0.00 0.00 3.91
2607 7465 3.142174 GACCCAATCCTAAGCATAGCAC 58.858 50.000 0.00 0.00 0.00 4.40
2619 7478 3.711086 AGCATAGCACAAGATCGTGTAG 58.289 45.455 14.10 9.78 39.19 2.74
2625 7484 2.729882 GCACAAGATCGTGTAGTTCGTT 59.270 45.455 14.10 0.00 39.19 3.85
2627 7486 4.318546 GCACAAGATCGTGTAGTTCGTTTT 60.319 41.667 14.10 0.00 39.19 2.43
2628 7487 5.130519 CACAAGATCGTGTAGTTCGTTTTG 58.869 41.667 14.10 0.00 32.00 2.44
2629 7488 4.141680 CAAGATCGTGTAGTTCGTTTTGC 58.858 43.478 0.00 0.00 0.00 3.68
2630 7489 3.650139 AGATCGTGTAGTTCGTTTTGCT 58.350 40.909 0.00 0.00 0.00 3.91
2632 7491 4.857588 AGATCGTGTAGTTCGTTTTGCTAG 59.142 41.667 0.00 0.00 0.00 3.42
2633 7492 4.227512 TCGTGTAGTTCGTTTTGCTAGA 57.772 40.909 0.00 0.00 0.00 2.43
2634 7493 4.224433 TCGTGTAGTTCGTTTTGCTAGAG 58.776 43.478 0.00 0.00 0.00 2.43
2635 7494 3.364023 CGTGTAGTTCGTTTTGCTAGAGG 59.636 47.826 0.00 0.00 0.00 3.69
2637 7496 5.464168 GTGTAGTTCGTTTTGCTAGAGGTA 58.536 41.667 0.00 0.00 0.00 3.08
2640 7499 5.401531 AGTTCGTTTTGCTAGAGGTATCA 57.598 39.130 0.00 0.00 0.00 2.15
2641 7500 5.169295 AGTTCGTTTTGCTAGAGGTATCAC 58.831 41.667 0.00 0.00 0.00 3.06
2642 7501 5.047235 AGTTCGTTTTGCTAGAGGTATCACT 60.047 40.000 0.00 0.00 0.00 3.41
2643 7502 4.744570 TCGTTTTGCTAGAGGTATCACTG 58.255 43.478 0.00 0.00 0.00 3.66
2645 7504 4.192317 GTTTTGCTAGAGGTATCACTGGG 58.808 47.826 0.00 0.00 0.00 4.45
2646 7505 2.848678 TGCTAGAGGTATCACTGGGT 57.151 50.000 0.00 0.00 0.00 4.51
2647 7506 2.388735 TGCTAGAGGTATCACTGGGTG 58.611 52.381 0.00 0.00 34.45 4.61
2682 7541 4.381718 GCACTACAGGTATCTCCGAAAGTT 60.382 45.833 0.00 0.00 41.99 2.66
2684 7543 5.805994 CACTACAGGTATCTCCGAAAGTTTC 59.194 44.000 5.47 5.47 41.99 2.78
2695 7554 2.685897 CCGAAAGTTTCTGTTGGGTTGA 59.314 45.455 13.56 0.00 0.00 3.18
2700 7559 1.064952 GTTTCTGTTGGGTTGACACGG 59.935 52.381 0.00 0.00 0.00 4.94
2708 7567 0.458025 GGGTTGACACGGATCGAGAC 60.458 60.000 0.00 0.00 0.00 3.36
2729 7588 1.142060 TGGGATTTGTCACTCCGTGTT 59.858 47.619 0.00 0.00 34.79 3.32
2730 7589 2.369203 TGGGATTTGTCACTCCGTGTTA 59.631 45.455 0.00 0.00 34.79 2.41
2731 7590 2.740447 GGGATTTGTCACTCCGTGTTAC 59.260 50.000 0.00 0.00 34.79 2.50
2732 7591 3.395639 GGATTTGTCACTCCGTGTTACA 58.604 45.455 0.00 0.00 34.79 2.41
2743 7603 3.945921 CTCCGTGTTACAGAGAGGTATCA 59.054 47.826 4.22 0.00 0.00 2.15
2761 7621 2.683933 CTGGGCCCACTCGGTAGT 60.684 66.667 24.45 0.00 35.91 2.73
2776 7636 5.011023 ACTCGGTAGTGCATCATCATAATGA 59.989 40.000 0.00 0.00 39.33 2.57
2779 7639 5.243981 GGTAGTGCATCATCATAATGAGCT 58.756 41.667 0.00 0.00 44.90 4.09
2783 7643 5.826208 AGTGCATCATCATAATGAGCTCAAA 59.174 36.000 22.50 12.67 44.90 2.69
2792 7653 6.233434 TCATAATGAGCTCAAAGTGACAAGT 58.767 36.000 22.50 0.00 0.00 3.16
2793 7654 4.825546 AATGAGCTCAAAGTGACAAGTG 57.174 40.909 22.50 0.00 0.00 3.16
2794 7655 3.266510 TGAGCTCAAAGTGACAAGTGT 57.733 42.857 15.67 0.00 0.00 3.55
2795 7656 3.198068 TGAGCTCAAAGTGACAAGTGTC 58.802 45.455 15.67 4.43 44.97 3.67
2798 7659 2.289002 GCTCAAAGTGACAAGTGTCTGG 59.711 50.000 12.43 0.00 44.99 3.86
2800 7661 4.693283 CTCAAAGTGACAAGTGTCTGGTA 58.307 43.478 12.43 0.00 44.99 3.25
2801 7662 4.693283 TCAAAGTGACAAGTGTCTGGTAG 58.307 43.478 12.43 1.32 44.99 3.18
2808 7669 0.824759 AAGTGTCTGGTAGCGGGATC 59.175 55.000 0.00 0.00 0.00 3.36
2812 7673 0.601311 GTCTGGTAGCGGGATCATGC 60.601 60.000 0.00 0.00 0.00 4.06
2813 7674 1.048160 TCTGGTAGCGGGATCATGCA 61.048 55.000 10.56 0.00 0.00 3.96
2818 7679 1.726791 GTAGCGGGATCATGCATTACG 59.273 52.381 0.00 0.00 0.00 3.18
2820 7681 0.884704 GCGGGATCATGCATTACGGT 60.885 55.000 0.00 0.00 0.00 4.83
2863 7724 4.142513 GGTAACGAGACTGAACGAGGTATT 60.143 45.833 0.00 0.00 0.00 1.89
2894 7755 1.022735 GATCGAGTCTCGGGCAAGTA 58.977 55.000 21.63 1.13 40.88 2.24
2895 7756 1.404391 GATCGAGTCTCGGGCAAGTAA 59.596 52.381 21.63 0.37 40.88 2.24
2897 7758 0.242825 CGAGTCTCGGGCAAGTAACA 59.757 55.000 14.68 0.00 36.00 2.41
2903 7764 0.896923 TCGGGCAAGTAACATACCGT 59.103 50.000 0.00 0.00 41.82 4.83
2904 7765 1.135024 TCGGGCAAGTAACATACCGTC 60.135 52.381 0.00 0.00 41.82 4.79
2905 7766 1.134907 CGGGCAAGTAACATACCGTCT 60.135 52.381 0.00 0.00 36.78 4.18
2918 7779 4.468510 ACATACCGTCTGACAAAGGGAATA 59.531 41.667 8.73 0.00 0.00 1.75
2928 7789 4.345837 TGACAAAGGGAATAGTATACGGGG 59.654 45.833 0.00 0.00 0.00 5.73
2932 7793 2.636403 AGGGAATAGTATACGGGGTTGC 59.364 50.000 0.00 0.00 0.00 4.17
2935 7796 4.062991 GGAATAGTATACGGGGTTGCTTG 58.937 47.826 0.00 0.00 0.00 4.01
2937 7798 5.362105 AATAGTATACGGGGTTGCTTGAA 57.638 39.130 0.00 0.00 0.00 2.69
2938 7799 2.981898 AGTATACGGGGTTGCTTGAAC 58.018 47.619 0.00 0.00 0.00 3.18
2986 7847 4.420206 AGATCATCGAGGAATATGTGGGA 58.580 43.478 2.91 0.00 0.00 4.37
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
43 44 1.429148 GCCTACAAATCACCGCTCCG 61.429 60.000 0.00 0.00 0.00 4.63
195 3727 2.110213 GTGCAACTCACCCCGTCA 59.890 61.111 0.00 0.00 39.79 4.35
283 3815 0.040958 GAAGCCTGCACTCAAACACG 60.041 55.000 0.00 0.00 0.00 4.49
302 3835 5.164215 CGTAGTAACACTAGCAACGAACTTG 60.164 44.000 0.00 0.00 30.45 3.16
550 5334 9.950496 ACTAAAGGATGCCATATTGATTAGTAG 57.050 33.333 0.00 0.00 31.39 2.57
571 5355 7.340743 TGAAGTGTCAGGGAATGAAAAACTAAA 59.659 33.333 0.00 0.00 40.43 1.85
574 5358 5.200483 TGAAGTGTCAGGGAATGAAAAACT 58.800 37.500 0.00 0.00 40.43 2.66
606 5390 3.377485 TGTCATGGTTCGAAAAACGGAAA 59.623 39.130 0.00 0.00 42.82 3.13
610 5394 4.286910 ACATTGTCATGGTTCGAAAAACG 58.713 39.130 0.00 0.00 37.80 3.60
616 5400 5.506686 TGAAAAACATTGTCATGGTTCGA 57.493 34.783 0.00 0.00 39.60 3.71
617 5401 6.033831 GCTATGAAAAACATTGTCATGGTTCG 59.966 38.462 6.11 0.00 39.60 3.95
626 5410 8.674263 TTTTTCCATGCTATGAAAAACATTGT 57.326 26.923 13.17 0.00 40.07 2.71
654 5438 8.630054 TGTTTGCTATGACTAATAAAACCTGT 57.370 30.769 0.00 0.00 0.00 4.00
659 5443 6.889722 AGCCCTGTTTGCTATGACTAATAAAA 59.110 34.615 0.00 0.00 37.28 1.52
679 5463 5.853936 AGAAAAAGCGAAAAATAAAGCCCT 58.146 33.333 0.00 0.00 0.00 5.19
692 5476 3.773860 TTTGCTGTGAAGAAAAAGCGA 57.226 38.095 0.00 0.00 38.53 4.93
695 5479 4.034394 GGCCTTTTTGCTGTGAAGAAAAAG 59.966 41.667 0.00 0.00 42.46 2.27
721 5507 0.800300 CTCGTTCGAGAGCAGAAGCC 60.800 60.000 15.87 0.00 43.56 4.35
814 5650 4.034048 GCCTTACATATTCAACACAGACCG 59.966 45.833 0.00 0.00 0.00 4.79
815 5651 4.034048 CGCCTTACATATTCAACACAGACC 59.966 45.833 0.00 0.00 0.00 3.85
1007 5852 7.201207 CGACGATCGATGCGTTATTAGATTTTA 60.201 37.037 24.34 0.00 43.74 1.52
1008 5853 6.398621 CGACGATCGATGCGTTATTAGATTTT 60.399 38.462 24.34 0.00 43.74 1.82
1009 5854 5.059343 CGACGATCGATGCGTTATTAGATTT 59.941 40.000 24.34 0.00 43.74 2.17
1068 5917 4.789075 CATGTTGGCTGCGGCTGC 62.789 66.667 21.78 21.78 43.20 5.25
1069 5918 4.124351 CCATGTTGGCTGCGGCTG 62.124 66.667 18.85 7.13 38.73 4.85
1070 5919 4.349503 TCCATGTTGGCTGCGGCT 62.350 61.111 18.85 0.00 37.47 5.52
1071 5920 3.818787 CTCCATGTTGGCTGCGGC 61.819 66.667 9.72 9.72 37.47 6.53
1072 5921 3.136123 CCTCCATGTTGGCTGCGG 61.136 66.667 0.00 0.00 37.47 5.69
1185 6034 2.296471 AGTACACTTCGAGGAAGGTGTG 59.704 50.000 0.00 8.37 43.25 3.82
1484 6333 3.012936 CTCGTCGTCGCTGTCGTCT 62.013 63.158 0.00 0.00 36.96 4.18
1532 6381 3.068691 TTCTGGAGGTCGAGGCGG 61.069 66.667 0.00 0.00 0.00 6.13
1541 6390 7.677892 TCAGATCATCATTATTCTTCTGGAGG 58.322 38.462 0.00 0.00 32.10 4.30
1666 6515 4.326766 CCACGGTGCCGCAAACAG 62.327 66.667 10.87 0.00 44.19 3.16
1692 6541 2.890371 GCCCTCGGTCACGTACAT 59.110 61.111 0.00 0.00 41.85 2.29
1742 6598 2.416431 GCCATCAGCAAACCAAGCTTAG 60.416 50.000 0.00 0.00 41.14 2.18
1774 6632 0.921896 ATGTGGTAATCAGGCAGGCT 59.078 50.000 0.00 0.00 0.00 4.58
1787 6645 7.009179 TCTCTTTGAGTTCTTCATATGTGGT 57.991 36.000 1.90 0.00 35.27 4.16
1886 6744 1.821332 CAGGAGAAAGCCGCCCATC 60.821 63.158 0.00 0.00 35.03 3.51
1887 6745 2.273449 CAGGAGAAAGCCGCCCAT 59.727 61.111 0.00 0.00 35.03 4.00
1888 6746 4.033776 CCAGGAGAAAGCCGCCCA 62.034 66.667 0.00 0.00 35.03 5.36
1890 6748 4.722700 TGCCAGGAGAAAGCCGCC 62.723 66.667 0.00 0.00 34.63 6.13
1891 6749 2.672996 TTGCCAGGAGAAAGCCGC 60.673 61.111 0.00 0.00 0.00 6.53
1892 6750 2.042831 CCTTGCCAGGAGAAAGCCG 61.043 63.158 0.00 0.00 44.19 5.52
1893 6751 2.346541 GCCTTGCCAGGAGAAAGCC 61.347 63.158 8.31 0.00 44.19 4.35
1894 6752 0.897401 AAGCCTTGCCAGGAGAAAGC 60.897 55.000 8.31 0.00 44.19 3.51
1895 6753 2.026822 TCTAAGCCTTGCCAGGAGAAAG 60.027 50.000 8.31 0.00 44.19 2.62
1896 6754 1.985159 TCTAAGCCTTGCCAGGAGAAA 59.015 47.619 8.31 0.00 44.19 2.52
1897 6755 1.556911 CTCTAAGCCTTGCCAGGAGAA 59.443 52.381 8.31 0.00 44.19 2.87
1898 6756 1.198713 CTCTAAGCCTTGCCAGGAGA 58.801 55.000 8.31 0.70 44.19 3.71
1899 6757 0.463474 GCTCTAAGCCTTGCCAGGAG 60.463 60.000 8.31 0.00 44.19 3.69
1900 6758 1.200760 TGCTCTAAGCCTTGCCAGGA 61.201 55.000 8.31 0.00 44.19 3.86
1901 6759 0.106819 ATGCTCTAAGCCTTGCCAGG 60.107 55.000 0.00 0.00 41.51 4.45
1902 6760 1.134159 AGATGCTCTAAGCCTTGCCAG 60.134 52.381 0.00 0.00 41.51 4.85
1903 6761 0.914644 AGATGCTCTAAGCCTTGCCA 59.085 50.000 0.00 0.00 41.51 4.92
1904 6762 1.592064 GAGATGCTCTAAGCCTTGCC 58.408 55.000 0.00 0.00 41.51 4.52
1905 6763 1.134280 TGGAGATGCTCTAAGCCTTGC 60.134 52.381 0.00 0.00 41.51 4.01
1906 6764 2.941720 GTTGGAGATGCTCTAAGCCTTG 59.058 50.000 0.00 0.00 41.51 3.61
1907 6765 2.843113 AGTTGGAGATGCTCTAAGCCTT 59.157 45.455 0.00 0.00 41.51 4.35
1908 6766 2.476199 AGTTGGAGATGCTCTAAGCCT 58.524 47.619 0.00 0.00 41.51 4.58
1909 6767 2.998316 AGTTGGAGATGCTCTAAGCC 57.002 50.000 0.00 0.00 41.51 4.35
1910 6768 3.133003 TGGTAGTTGGAGATGCTCTAAGC 59.867 47.826 0.00 0.00 42.82 3.09
1911 6769 4.688021 GTGGTAGTTGGAGATGCTCTAAG 58.312 47.826 0.00 0.00 31.92 2.18
1912 6770 3.130516 CGTGGTAGTTGGAGATGCTCTAA 59.869 47.826 0.00 0.00 0.00 2.10
1913 6771 2.688446 CGTGGTAGTTGGAGATGCTCTA 59.312 50.000 0.00 0.00 0.00 2.43
1914 6772 1.478510 CGTGGTAGTTGGAGATGCTCT 59.521 52.381 0.00 0.00 0.00 4.09
1915 6773 1.927895 CGTGGTAGTTGGAGATGCTC 58.072 55.000 0.00 0.00 0.00 4.26
1916 6774 0.108138 GCGTGGTAGTTGGAGATGCT 60.108 55.000 0.00 0.00 0.00 3.79
1917 6775 0.108138 AGCGTGGTAGTTGGAGATGC 60.108 55.000 0.00 0.00 0.00 3.91
1918 6776 3.520290 TTAGCGTGGTAGTTGGAGATG 57.480 47.619 0.00 0.00 0.00 2.90
1919 6777 4.546829 TTTTAGCGTGGTAGTTGGAGAT 57.453 40.909 0.00 0.00 0.00 2.75
1920 6778 4.339872 TTTTTAGCGTGGTAGTTGGAGA 57.660 40.909 0.00 0.00 0.00 3.71
1938 6796 7.045126 TGATTCCGGAATGTAAACACTTTTT 57.955 32.000 33.84 5.57 0.00 1.94
1939 6797 6.642707 TGATTCCGGAATGTAAACACTTTT 57.357 33.333 33.84 6.07 0.00 2.27
1940 6798 6.432783 TCATGATTCCGGAATGTAAACACTTT 59.567 34.615 33.84 6.30 0.00 2.66
1941 6799 5.943416 TCATGATTCCGGAATGTAAACACTT 59.057 36.000 33.84 12.56 0.00 3.16
1942 6800 5.496556 TCATGATTCCGGAATGTAAACACT 58.503 37.500 33.84 7.73 0.00 3.55
1943 6801 5.730568 GCTCATGATTCCGGAATGTAAACAC 60.731 44.000 33.84 17.42 0.00 3.32
1944 6802 4.335315 GCTCATGATTCCGGAATGTAAACA 59.665 41.667 33.84 23.65 0.00 2.83
1945 6803 4.576463 AGCTCATGATTCCGGAATGTAAAC 59.424 41.667 33.84 18.85 0.00 2.01
1946 6804 4.780815 AGCTCATGATTCCGGAATGTAAA 58.219 39.130 33.84 16.33 0.00 2.01
1947 6805 4.422073 AGCTCATGATTCCGGAATGTAA 57.578 40.909 33.84 18.79 0.00 2.41
1948 6806 4.422073 AAGCTCATGATTCCGGAATGTA 57.578 40.909 33.84 21.72 0.00 2.29
1949 6807 3.287867 AAGCTCATGATTCCGGAATGT 57.712 42.857 33.84 18.89 0.00 2.71
1950 6808 4.357142 CAAAAGCTCATGATTCCGGAATG 58.643 43.478 33.84 21.14 0.00 2.67
1951 6809 3.181483 GCAAAAGCTCATGATTCCGGAAT 60.181 43.478 29.60 29.60 0.00 3.01
1952 6810 2.164219 GCAAAAGCTCATGATTCCGGAA 59.836 45.455 21.37 21.37 0.00 4.30
1953 6811 1.745087 GCAAAAGCTCATGATTCCGGA 59.255 47.619 0.00 0.00 0.00 5.14
1954 6812 1.532505 CGCAAAAGCTCATGATTCCGG 60.533 52.381 0.00 0.00 0.00 5.14
1955 6813 1.818850 CGCAAAAGCTCATGATTCCG 58.181 50.000 0.00 0.00 0.00 4.30
1956 6814 1.553308 GCGCAAAAGCTCATGATTCC 58.447 50.000 0.30 0.00 0.00 3.01
1957 6815 1.186030 CGCGCAAAAGCTCATGATTC 58.814 50.000 8.75 0.00 34.40 2.52
1958 6816 0.523072 ACGCGCAAAAGCTCATGATT 59.477 45.000 5.73 0.00 34.40 2.57
1959 6817 0.097674 GACGCGCAAAAGCTCATGAT 59.902 50.000 5.73 0.00 34.40 2.45
1960 6818 0.950555 AGACGCGCAAAAGCTCATGA 60.951 50.000 5.73 0.00 34.40 3.07
1961 6819 0.519999 GAGACGCGCAAAAGCTCATG 60.520 55.000 5.73 0.00 34.40 3.07
1962 6820 1.790387 GAGACGCGCAAAAGCTCAT 59.210 52.632 5.73 0.00 34.40 2.90
1963 6821 2.657757 CGAGACGCGCAAAAGCTCA 61.658 57.895 5.73 0.00 34.40 4.26
1964 6822 2.094724 CGAGACGCGCAAAAGCTC 59.905 61.111 5.73 5.08 34.40 4.09
1965 6823 3.414700 CCGAGACGCGCAAAAGCT 61.415 61.111 5.73 0.00 39.11 3.74
1966 6824 3.354499 CTCCGAGACGCGCAAAAGC 62.354 63.158 5.73 0.00 39.11 3.51
1967 6825 2.772189 CTCCGAGACGCGCAAAAG 59.228 61.111 5.73 0.00 39.11 2.27
1968 6826 3.411351 GCTCCGAGACGCGCAAAA 61.411 61.111 5.73 0.00 39.11 2.44
1988 6846 4.953010 TTGCAGCGCCTGAAGCCA 62.953 61.111 2.29 0.00 38.78 4.75
1989 6847 2.697992 TTTTTGCAGCGCCTGAAGCC 62.698 55.000 2.29 0.00 38.78 4.35
1990 6848 1.300080 TTTTTGCAGCGCCTGAAGC 60.300 52.632 2.29 1.03 32.44 3.86
2005 6863 2.746269 TGTACTGAGCGCGTAGTTTTT 58.254 42.857 21.44 3.15 0.00 1.94
2006 6864 2.427232 TGTACTGAGCGCGTAGTTTT 57.573 45.000 21.44 3.46 0.00 2.43
2007 6865 2.427232 TTGTACTGAGCGCGTAGTTT 57.573 45.000 21.44 4.09 0.00 2.66
2008 6866 2.056577 GTTTGTACTGAGCGCGTAGTT 58.943 47.619 21.44 8.85 0.00 2.24
2009 6867 1.001048 TGTTTGTACTGAGCGCGTAGT 60.001 47.619 20.39 20.39 0.00 2.73
2010 6868 1.693467 TGTTTGTACTGAGCGCGTAG 58.307 50.000 8.43 7.12 0.00 3.51
2011 6869 1.788308 GTTGTTTGTACTGAGCGCGTA 59.212 47.619 8.43 0.00 0.00 4.42
2012 6870 0.580104 GTTGTTTGTACTGAGCGCGT 59.420 50.000 8.43 0.00 0.00 6.01
2013 6871 0.579630 TGTTGTTTGTACTGAGCGCG 59.420 50.000 0.00 0.00 0.00 6.86
2014 6872 2.969443 ATGTTGTTTGTACTGAGCGC 57.031 45.000 0.00 0.00 0.00 5.92
2015 6873 4.142924 TGCATATGTTGTTTGTACTGAGCG 60.143 41.667 4.29 0.00 0.00 5.03
2016 6874 5.088739 GTGCATATGTTGTTTGTACTGAGC 58.911 41.667 4.29 0.00 0.00 4.26
2017 6875 6.402550 GGAGTGCATATGTTGTTTGTACTGAG 60.403 42.308 4.29 0.00 36.61 3.35
2018 6876 5.411361 GGAGTGCATATGTTGTTTGTACTGA 59.589 40.000 4.29 0.00 36.61 3.41
2019 6877 5.181056 TGGAGTGCATATGTTGTTTGTACTG 59.819 40.000 4.29 0.00 36.61 2.74
2020 6878 5.312895 TGGAGTGCATATGTTGTTTGTACT 58.687 37.500 4.29 0.00 38.72 2.73
2021 6879 5.621197 TGGAGTGCATATGTTGTTTGTAC 57.379 39.130 4.29 0.00 0.00 2.90
2022 6880 6.039829 TGTTTGGAGTGCATATGTTGTTTGTA 59.960 34.615 4.29 0.00 0.00 2.41
2023 6881 5.163468 TGTTTGGAGTGCATATGTTGTTTGT 60.163 36.000 4.29 0.00 0.00 2.83
2024 6882 5.175491 GTGTTTGGAGTGCATATGTTGTTTG 59.825 40.000 4.29 0.00 0.00 2.93
2025 6883 5.163468 TGTGTTTGGAGTGCATATGTTGTTT 60.163 36.000 4.29 0.00 0.00 2.83
2026 6884 4.340666 TGTGTTTGGAGTGCATATGTTGTT 59.659 37.500 4.29 0.00 0.00 2.83
2027 6885 3.888323 TGTGTTTGGAGTGCATATGTTGT 59.112 39.130 4.29 0.00 0.00 3.32
2028 6886 4.502171 TGTGTTTGGAGTGCATATGTTG 57.498 40.909 4.29 0.00 0.00 3.33
2029 6887 4.261994 GGTTGTGTTTGGAGTGCATATGTT 60.262 41.667 4.29 0.00 0.00 2.71
2030 6888 3.255642 GGTTGTGTTTGGAGTGCATATGT 59.744 43.478 4.29 0.00 0.00 2.29
2031 6889 3.367292 GGGTTGTGTTTGGAGTGCATATG 60.367 47.826 0.00 0.00 0.00 1.78
2032 6890 2.825532 GGGTTGTGTTTGGAGTGCATAT 59.174 45.455 0.00 0.00 0.00 1.78
2033 6891 2.235016 GGGTTGTGTTTGGAGTGCATA 58.765 47.619 0.00 0.00 0.00 3.14
2034 6892 1.039856 GGGTTGTGTTTGGAGTGCAT 58.960 50.000 0.00 0.00 0.00 3.96
2035 6893 0.323816 TGGGTTGTGTTTGGAGTGCA 60.324 50.000 0.00 0.00 0.00 4.57
2036 6894 0.102300 GTGGGTTGTGTTTGGAGTGC 59.898 55.000 0.00 0.00 0.00 4.40
2037 6895 0.380378 CGTGGGTTGTGTTTGGAGTG 59.620 55.000 0.00 0.00 0.00 3.51
2038 6896 0.253610 TCGTGGGTTGTGTTTGGAGT 59.746 50.000 0.00 0.00 0.00 3.85
2039 6897 1.333619 CTTCGTGGGTTGTGTTTGGAG 59.666 52.381 0.00 0.00 0.00 3.86
2040 6898 1.065345 TCTTCGTGGGTTGTGTTTGGA 60.065 47.619 0.00 0.00 0.00 3.53
2041 6899 1.384525 TCTTCGTGGGTTGTGTTTGG 58.615 50.000 0.00 0.00 0.00 3.28
2042 6900 2.616376 TGATCTTCGTGGGTTGTGTTTG 59.384 45.455 0.00 0.00 0.00 2.93
2043 6901 2.925724 TGATCTTCGTGGGTTGTGTTT 58.074 42.857 0.00 0.00 0.00 2.83
2044 6902 2.631160 TGATCTTCGTGGGTTGTGTT 57.369 45.000 0.00 0.00 0.00 3.32
2045 6903 2.616842 GTTTGATCTTCGTGGGTTGTGT 59.383 45.455 0.00 0.00 0.00 3.72
2046 6904 2.616376 TGTTTGATCTTCGTGGGTTGTG 59.384 45.455 0.00 0.00 0.00 3.33
2047 6905 2.925724 TGTTTGATCTTCGTGGGTTGT 58.074 42.857 0.00 0.00 0.00 3.32
2048 6906 5.621197 TTATGTTTGATCTTCGTGGGTTG 57.379 39.130 0.00 0.00 0.00 3.77
2049 6907 5.533154 TGTTTATGTTTGATCTTCGTGGGTT 59.467 36.000 0.00 0.00 0.00 4.11
2050 6908 5.067273 TGTTTATGTTTGATCTTCGTGGGT 58.933 37.500 0.00 0.00 0.00 4.51
2051 6909 5.621197 TGTTTATGTTTGATCTTCGTGGG 57.379 39.130 0.00 0.00 0.00 4.61
2052 6910 7.922505 TTTTGTTTATGTTTGATCTTCGTGG 57.077 32.000 0.00 0.00 0.00 4.94
2130 6988 9.410556 GTTGAACTATTTGTTGTATTGCAAGAT 57.589 29.630 4.94 0.00 39.30 2.40
2131 6989 8.409371 TGTTGAACTATTTGTTGTATTGCAAGA 58.591 29.630 4.94 0.00 39.30 3.02
2132 6990 8.572828 TGTTGAACTATTTGTTGTATTGCAAG 57.427 30.769 4.94 0.00 39.30 4.01
2133 6991 8.932945 TTGTTGAACTATTTGTTGTATTGCAA 57.067 26.923 0.00 0.00 39.30 4.08
2174 7032 8.745590 TGATCATGATTTGATGTTTGATCTTGT 58.254 29.630 10.14 0.00 45.29 3.16
2175 7033 9.750125 ATGATCATGATTTGATGTTTGATCTTG 57.250 29.630 10.14 0.00 45.29 3.02
2176 7034 9.967346 GATGATCATGATTTGATGTTTGATCTT 57.033 29.630 14.30 5.79 45.29 2.40
2177 7035 9.131791 TGATGATCATGATTTGATGTTTGATCT 57.868 29.630 14.30 0.00 45.29 2.75
2178 7036 9.914131 ATGATGATCATGATTTGATGTTTGATC 57.086 29.630 14.30 0.00 45.29 2.92
2194 7052 3.065786 GTGCCGAAACACATGATGATCAT 59.934 43.478 8.25 8.25 40.40 2.45
2195 7053 2.419673 GTGCCGAAACACATGATGATCA 59.580 45.455 0.00 0.00 40.40 2.92
2196 7054 2.537529 CGTGCCGAAACACATGATGATC 60.538 50.000 0.00 0.00 40.73 2.92
2197 7055 1.398041 CGTGCCGAAACACATGATGAT 59.602 47.619 0.00 0.00 40.73 2.45
2198 7056 0.795698 CGTGCCGAAACACATGATGA 59.204 50.000 0.00 0.00 40.73 2.92
2199 7057 0.516877 ACGTGCCGAAACACATGATG 59.483 50.000 0.00 0.00 40.73 3.07
2200 7058 0.796312 GACGTGCCGAAACACATGAT 59.204 50.000 0.00 0.00 40.73 2.45
2201 7059 1.553195 CGACGTGCCGAAACACATGA 61.553 55.000 0.00 0.00 40.73 3.07
2202 7060 1.154672 CGACGTGCCGAAACACATG 60.155 57.895 0.00 0.00 40.73 3.21
2203 7061 0.876777 TTCGACGTGCCGAAACACAT 60.877 50.000 9.37 0.00 44.35 3.21
2204 7062 1.518792 TTCGACGTGCCGAAACACA 60.519 52.632 9.37 0.00 44.35 3.72
2205 7063 3.311710 TTCGACGTGCCGAAACAC 58.688 55.556 9.37 0.00 44.35 3.32
2210 7068 3.657448 ATGCCATTCGACGTGCCGA 62.657 57.895 0.00 0.00 36.70 5.54
2211 7069 3.195002 ATGCCATTCGACGTGCCG 61.195 61.111 0.00 0.00 0.00 5.69
2212 7070 1.439353 ATCATGCCATTCGACGTGCC 61.439 55.000 0.00 0.00 0.00 5.01
2213 7071 1.070577 GTATCATGCCATTCGACGTGC 60.071 52.381 0.00 0.00 0.00 5.34
2214 7072 1.190103 CGTATCATGCCATTCGACGTG 59.810 52.381 0.00 0.00 0.00 4.49
2215 7073 1.066454 TCGTATCATGCCATTCGACGT 59.934 47.619 0.00 0.00 0.00 4.34
2216 7074 1.716050 CTCGTATCATGCCATTCGACG 59.284 52.381 0.00 0.00 0.00 5.12
2217 7075 2.061773 CCTCGTATCATGCCATTCGAC 58.938 52.381 0.00 0.00 0.00 4.20
2218 7076 1.000843 CCCTCGTATCATGCCATTCGA 59.999 52.381 0.00 0.00 0.00 3.71
2219 7077 1.000843 TCCCTCGTATCATGCCATTCG 59.999 52.381 0.00 0.00 0.00 3.34
2220 7078 2.808543 GTTCCCTCGTATCATGCCATTC 59.191 50.000 0.00 0.00 0.00 2.67
2221 7079 2.172505 TGTTCCCTCGTATCATGCCATT 59.827 45.455 0.00 0.00 0.00 3.16
2222 7080 1.768275 TGTTCCCTCGTATCATGCCAT 59.232 47.619 0.00 0.00 0.00 4.40
2223 7081 1.199615 TGTTCCCTCGTATCATGCCA 58.800 50.000 0.00 0.00 0.00 4.92
2224 7082 2.325583 TTGTTCCCTCGTATCATGCC 57.674 50.000 0.00 0.00 0.00 4.40
2225 7083 3.059597 CGATTTGTTCCCTCGTATCATGC 60.060 47.826 0.00 0.00 0.00 4.06
2226 7084 3.494626 CCGATTTGTTCCCTCGTATCATG 59.505 47.826 0.00 0.00 0.00 3.07
2227 7085 3.494398 CCCGATTTGTTCCCTCGTATCAT 60.494 47.826 0.00 0.00 0.00 2.45
2228 7086 2.159014 CCCGATTTGTTCCCTCGTATCA 60.159 50.000 0.00 0.00 0.00 2.15
2229 7087 2.480845 CCCGATTTGTTCCCTCGTATC 58.519 52.381 0.00 0.00 0.00 2.24
2230 7088 1.474498 GCCCGATTTGTTCCCTCGTAT 60.474 52.381 0.00 0.00 0.00 3.06
2231 7089 0.108041 GCCCGATTTGTTCCCTCGTA 60.108 55.000 0.00 0.00 0.00 3.43
2232 7090 1.376812 GCCCGATTTGTTCCCTCGT 60.377 57.895 0.00 0.00 0.00 4.18
2233 7091 2.112815 GGCCCGATTTGTTCCCTCG 61.113 63.158 0.00 0.00 0.00 4.63
2234 7092 1.001393 TGGCCCGATTTGTTCCCTC 60.001 57.895 0.00 0.00 0.00 4.30
2235 7093 1.304134 GTGGCCCGATTTGTTCCCT 60.304 57.895 0.00 0.00 0.00 4.20
2236 7094 1.304134 AGTGGCCCGATTTGTTCCC 60.304 57.895 0.00 0.00 0.00 3.97
2237 7095 0.322546 AGAGTGGCCCGATTTGTTCC 60.323 55.000 0.00 0.00 0.00 3.62
2238 7096 1.087501 GAGAGTGGCCCGATTTGTTC 58.912 55.000 0.00 0.00 0.00 3.18
2239 7097 0.673644 CGAGAGTGGCCCGATTTGTT 60.674 55.000 0.00 0.00 0.00 2.83
2240 7098 1.079127 CGAGAGTGGCCCGATTTGT 60.079 57.895 0.00 0.00 0.00 2.83
2241 7099 2.464459 GCGAGAGTGGCCCGATTTG 61.464 63.158 0.00 0.00 0.00 2.32
2242 7100 2.125106 GCGAGAGTGGCCCGATTT 60.125 61.111 0.00 0.00 0.00 2.17
2243 7101 3.376935 CTGCGAGAGTGGCCCGATT 62.377 63.158 0.00 0.00 0.00 3.34
2244 7102 3.842923 CTGCGAGAGTGGCCCGAT 61.843 66.667 0.00 0.00 0.00 4.18
2249 7107 4.828925 GAGGGCTGCGAGAGTGGC 62.829 72.222 0.00 0.00 0.00 5.01
2250 7108 4.154347 GGAGGGCTGCGAGAGTGG 62.154 72.222 0.00 0.00 0.00 4.00
2271 7129 3.188786 GACATCCCGTGCGAGTGC 61.189 66.667 0.00 0.00 43.20 4.40
2272 7130 2.509336 GGACATCCCGTGCGAGTG 60.509 66.667 0.00 0.00 0.00 3.51
2282 7140 2.703007 AGTATGAGCTCTTGGGACATCC 59.297 50.000 16.19 0.00 39.30 3.51
2283 7141 3.386078 TCAGTATGAGCTCTTGGGACATC 59.614 47.826 16.19 0.00 42.56 3.06
2284 7142 3.378512 TCAGTATGAGCTCTTGGGACAT 58.621 45.455 16.19 0.90 42.56 3.06
2285 7143 2.820178 TCAGTATGAGCTCTTGGGACA 58.180 47.619 16.19 0.00 42.56 4.02
2298 7156 8.629158 AGCAAGATTTAGACTACTCTCAGTATG 58.371 37.037 0.00 0.00 29.08 2.39
2299 7157 8.760980 AGCAAGATTTAGACTACTCTCAGTAT 57.239 34.615 0.00 0.00 29.08 2.12
2300 7158 9.854668 ATAGCAAGATTTAGACTACTCTCAGTA 57.145 33.333 0.00 0.00 0.00 2.74
2301 7159 8.760980 ATAGCAAGATTTAGACTACTCTCAGT 57.239 34.615 0.00 0.00 0.00 3.41
2302 7160 9.462174 CAATAGCAAGATTTAGACTACTCTCAG 57.538 37.037 0.00 0.00 0.00 3.35
2303 7161 8.417106 CCAATAGCAAGATTTAGACTACTCTCA 58.583 37.037 0.00 0.00 0.00 3.27
2304 7162 8.634444 TCCAATAGCAAGATTTAGACTACTCTC 58.366 37.037 0.00 0.00 0.00 3.20
2305 7163 8.540507 TCCAATAGCAAGATTTAGACTACTCT 57.459 34.615 0.00 0.00 0.00 3.24
2306 7164 8.634444 TCTCCAATAGCAAGATTTAGACTACTC 58.366 37.037 0.00 0.00 0.00 2.59
2307 7165 8.540507 TCTCCAATAGCAAGATTTAGACTACT 57.459 34.615 0.00 0.00 0.00 2.57
2310 7168 9.941325 CATATCTCCAATAGCAAGATTTAGACT 57.059 33.333 0.00 0.00 32.25 3.24
2311 7169 8.663911 GCATATCTCCAATAGCAAGATTTAGAC 58.336 37.037 0.00 0.00 32.25 2.59
2312 7170 7.826252 GGCATATCTCCAATAGCAAGATTTAGA 59.174 37.037 0.00 0.00 32.25 2.10
2313 7171 7.066766 GGGCATATCTCCAATAGCAAGATTTAG 59.933 40.741 0.00 0.00 32.25 1.85
2314 7172 6.886459 GGGCATATCTCCAATAGCAAGATTTA 59.114 38.462 0.00 0.00 32.25 1.40
2315 7173 5.713861 GGGCATATCTCCAATAGCAAGATTT 59.286 40.000 0.00 0.00 32.25 2.17
2316 7174 5.014966 AGGGCATATCTCCAATAGCAAGATT 59.985 40.000 0.00 0.00 32.25 2.40
2317 7175 4.539293 AGGGCATATCTCCAATAGCAAGAT 59.461 41.667 0.00 0.00 34.29 2.40
2318 7176 3.912528 AGGGCATATCTCCAATAGCAAGA 59.087 43.478 0.00 0.00 0.00 3.02
2319 7177 4.298103 AGGGCATATCTCCAATAGCAAG 57.702 45.455 0.00 0.00 0.00 4.01
2320 7178 5.093677 TCTAGGGCATATCTCCAATAGCAA 58.906 41.667 0.00 0.00 0.00 3.91
2321 7179 4.687976 TCTAGGGCATATCTCCAATAGCA 58.312 43.478 0.00 0.00 0.00 3.49
2322 7180 4.100808 CCTCTAGGGCATATCTCCAATAGC 59.899 50.000 0.00 0.00 0.00 2.97
2413 7271 9.079833 CGTGTATTTACGATTTCCGGATAATAT 57.920 33.333 4.15 0.00 46.46 1.28
2418 7276 4.505191 CACGTGTATTTACGATTTCCGGAT 59.495 41.667 4.15 0.00 46.46 4.18
2419 7277 3.858812 CACGTGTATTTACGATTTCCGGA 59.141 43.478 7.58 0.00 46.46 5.14
2420 7278 3.613737 ACACGTGTATTTACGATTTCCGG 59.386 43.478 21.98 0.00 46.46 5.14
2421 7279 4.324135 TCACACGTGTATTTACGATTTCCG 59.676 41.667 22.90 3.60 46.46 4.30
2427 7285 8.397148 TCTATGTATTCACACGTGTATTTACGA 58.603 33.333 22.90 10.59 46.25 3.43
2429 7287 8.749499 GGTCTATGTATTCACACGTGTATTTAC 58.251 37.037 22.90 20.59 37.54 2.01
2430 7288 8.468399 TGGTCTATGTATTCACACGTGTATTTA 58.532 33.333 22.90 10.01 37.54 1.40
2431 7289 7.277098 GTGGTCTATGTATTCACACGTGTATTT 59.723 37.037 22.90 11.05 37.54 1.40
2433 7291 6.127563 TGTGGTCTATGTATTCACACGTGTAT 60.128 38.462 22.90 14.96 37.54 2.29
2434 7292 5.183522 TGTGGTCTATGTATTCACACGTGTA 59.816 40.000 22.90 7.35 37.54 2.90
2435 7293 4.021807 TGTGGTCTATGTATTCACACGTGT 60.022 41.667 17.22 17.22 37.54 4.49
2436 7294 4.490743 TGTGGTCTATGTATTCACACGTG 58.509 43.478 15.48 15.48 37.54 4.49
2437 7295 4.794278 TGTGGTCTATGTATTCACACGT 57.206 40.909 0.00 0.00 37.54 4.49
2438 7296 4.926832 TGTTGTGGTCTATGTATTCACACG 59.073 41.667 0.00 0.00 37.96 4.49
2444 7302 5.191722 AGGGACATGTTGTGGTCTATGTATT 59.808 40.000 0.00 0.00 34.18 1.89
2455 7313 2.350522 GCTCACTAGGGACATGTTGTG 58.649 52.381 0.00 5.31 0.00 3.33
2459 7317 1.007721 AGAGGCTCACTAGGGACATGT 59.992 52.381 18.26 0.00 0.00 3.21
2472 7330 2.289547 CGAGCTAGTCAACTAGAGGCTC 59.710 54.545 19.03 16.73 46.80 4.70
2479 7337 5.638596 TTGATCAACGAGCTAGTCAACTA 57.361 39.130 3.38 0.00 0.00 2.24
2480 7338 4.521130 TTGATCAACGAGCTAGTCAACT 57.479 40.909 3.38 0.00 0.00 3.16
2510 7368 6.764308 AATGTTCATAGTCAGGAAACCATG 57.236 37.500 0.00 0.00 0.00 3.66
2512 7370 7.252612 TCTAATGTTCATAGTCAGGAAACCA 57.747 36.000 0.00 0.00 0.00 3.67
2528 7386 6.478673 TCGCGTTATCAATGACATCTAATGTT 59.521 34.615 5.77 0.00 45.03 2.71
2534 7392 3.670523 CGATCGCGTTATCAATGACATCT 59.329 43.478 5.77 0.00 0.00 2.90
2551 7409 4.488879 TCATTCTCCTAATGATGCGATCG 58.511 43.478 11.69 11.69 32.21 3.69
2601 7459 4.142447 ACGAACTACACGATCTTGTGCTAT 60.142 41.667 14.69 0.00 43.74 2.97
2607 7465 4.084537 AGCAAAACGAACTACACGATCTTG 60.085 41.667 0.00 0.00 34.70 3.02
2619 7478 5.062308 CAGTGATACCTCTAGCAAAACGAAC 59.938 44.000 0.00 0.00 0.00 3.95
2625 7484 3.197766 CACCCAGTGATACCTCTAGCAAA 59.802 47.826 0.00 0.00 35.23 3.68
2627 7486 2.024369 TCACCCAGTGATACCTCTAGCA 60.024 50.000 0.00 0.00 37.67 3.49
2628 7487 2.362717 GTCACCCAGTGATACCTCTAGC 59.637 54.545 0.05 0.00 44.63 3.42
2629 7488 3.904717 AGTCACCCAGTGATACCTCTAG 58.095 50.000 0.05 0.00 44.63 2.43
2630 7489 5.664815 ATAGTCACCCAGTGATACCTCTA 57.335 43.478 0.05 0.00 44.63 2.43
2632 7491 6.239345 CCTTTATAGTCACCCAGTGATACCTC 60.239 46.154 0.05 0.00 44.63 3.85
2633 7492 5.602978 CCTTTATAGTCACCCAGTGATACCT 59.397 44.000 0.05 0.00 44.63 3.08
2634 7493 5.365895 ACCTTTATAGTCACCCAGTGATACC 59.634 44.000 0.05 0.00 44.63 2.73
2635 7494 6.281405 CACCTTTATAGTCACCCAGTGATAC 58.719 44.000 0.05 0.00 44.63 2.24
2637 7496 4.384208 GCACCTTTATAGTCACCCAGTGAT 60.384 45.833 0.05 0.00 44.63 3.06
2640 7499 2.910319 TGCACCTTTATAGTCACCCAGT 59.090 45.455 0.00 0.00 0.00 4.00
2641 7500 3.055094 AGTGCACCTTTATAGTCACCCAG 60.055 47.826 14.63 0.00 0.00 4.45
2642 7501 2.910319 AGTGCACCTTTATAGTCACCCA 59.090 45.455 14.63 0.00 0.00 4.51
2643 7502 3.629142 AGTGCACCTTTATAGTCACCC 57.371 47.619 14.63 0.00 0.00 4.61
2645 7504 5.109903 CCTGTAGTGCACCTTTATAGTCAC 58.890 45.833 14.63 0.00 0.00 3.67
2646 7505 4.775780 ACCTGTAGTGCACCTTTATAGTCA 59.224 41.667 14.63 0.00 0.00 3.41
2647 7506 5.340439 ACCTGTAGTGCACCTTTATAGTC 57.660 43.478 14.63 0.00 0.00 2.59
2682 7541 0.542333 TCCGTGTCAACCCAACAGAA 59.458 50.000 0.00 0.00 0.00 3.02
2684 7543 1.156736 GATCCGTGTCAACCCAACAG 58.843 55.000 0.00 0.00 0.00 3.16
2695 7554 0.395862 ATCCCAGTCTCGATCCGTGT 60.396 55.000 0.00 0.00 0.00 4.49
2700 7559 3.118956 AGTGACAAATCCCAGTCTCGATC 60.119 47.826 0.00 0.00 35.81 3.69
2708 7567 3.935993 ACGGAGTGACAAATCCCAG 57.064 52.632 3.03 0.00 42.51 4.45
2729 7588 2.667470 GCCCAGTGATACCTCTCTGTA 58.333 52.381 0.00 0.00 40.03 2.74
2730 7589 1.490574 GCCCAGTGATACCTCTCTGT 58.509 55.000 0.00 0.00 40.03 3.41
2731 7590 0.755686 GGCCCAGTGATACCTCTCTG 59.244 60.000 0.00 0.00 40.89 3.35
2732 7591 0.399233 GGGCCCAGTGATACCTCTCT 60.399 60.000 19.95 0.00 0.00 3.10
2743 7603 2.683933 CTACCGAGTGGGCCCAGT 60.684 66.667 33.10 33.10 40.62 4.00
2761 7621 5.826208 ACTTTGAGCTCATTATGATGATGCA 59.174 36.000 19.04 0.00 41.28 3.96
2762 7622 6.017357 TCACTTTGAGCTCATTATGATGATGC 60.017 38.462 19.04 7.12 41.28 3.91
2792 7653 0.752658 CATGATCCCGCTACCAGACA 59.247 55.000 0.00 0.00 0.00 3.41
2793 7654 0.601311 GCATGATCCCGCTACCAGAC 60.601 60.000 0.00 0.00 0.00 3.51
2794 7655 1.048160 TGCATGATCCCGCTACCAGA 61.048 55.000 0.00 0.00 0.00 3.86
2795 7656 0.035881 ATGCATGATCCCGCTACCAG 59.964 55.000 0.00 0.00 0.00 4.00
2798 7659 1.726791 CGTAATGCATGATCCCGCTAC 59.273 52.381 0.00 0.00 0.00 3.58
2800 7661 0.603707 CCGTAATGCATGATCCCGCT 60.604 55.000 0.00 0.00 0.00 5.52
2801 7662 0.884704 ACCGTAATGCATGATCCCGC 60.885 55.000 0.00 0.00 0.00 6.13
2808 7669 4.802039 ACTTTACTCGTACCGTAATGCATG 59.198 41.667 0.00 0.00 0.00 4.06
2812 7673 5.634896 AGTCACTTTACTCGTACCGTAATG 58.365 41.667 11.12 11.12 0.00 1.90
2813 7674 5.886960 AGTCACTTTACTCGTACCGTAAT 57.113 39.130 3.96 0.00 0.00 1.89
2818 7679 2.991866 GGCAAGTCACTTTACTCGTACC 59.008 50.000 0.00 0.00 0.00 3.34
2820 7681 2.352030 CCGGCAAGTCACTTTACTCGTA 60.352 50.000 0.00 0.00 0.00 3.43
2831 7692 0.038892 GTCTCGTTACCGGCAAGTCA 60.039 55.000 0.00 0.00 33.95 3.41
2863 7724 0.179037 ACTCGATCGTCGGTATCCCA 60.179 55.000 15.94 0.00 40.88 4.37
2874 7735 1.298713 CTTGCCCGAGACTCGATCG 60.299 63.158 26.11 9.36 43.74 3.69
2881 7742 2.547826 GGTATGTTACTTGCCCGAGAC 58.452 52.381 0.00 0.00 0.00 3.36
2894 7755 2.635915 TCCCTTTGTCAGACGGTATGTT 59.364 45.455 2.34 0.00 0.00 2.71
2895 7756 2.253610 TCCCTTTGTCAGACGGTATGT 58.746 47.619 2.34 0.00 0.00 2.29
2897 7758 4.715297 ACTATTCCCTTTGTCAGACGGTAT 59.285 41.667 0.00 0.00 0.00 2.73
2903 7764 5.303589 CCCGTATACTATTCCCTTTGTCAGA 59.696 44.000 0.56 0.00 0.00 3.27
2904 7765 5.510861 CCCCGTATACTATTCCCTTTGTCAG 60.511 48.000 0.56 0.00 0.00 3.51
2905 7766 4.345837 CCCCGTATACTATTCCCTTTGTCA 59.654 45.833 0.56 0.00 0.00 3.58
2918 7779 2.981898 GTTCAAGCAACCCCGTATACT 58.018 47.619 0.56 0.00 0.00 2.12
2928 7789 1.464997 GATGTCGAGGGTTCAAGCAAC 59.535 52.381 0.00 0.00 0.00 4.17
2932 7793 1.350193 CACGATGTCGAGGGTTCAAG 58.650 55.000 9.67 0.00 43.02 3.02
2935 7796 4.496670 CCACGATGTCGAGGGTTC 57.503 61.111 9.67 0.00 44.52 3.62
2942 7803 0.179148 TCGGATGAACCACGATGTCG 60.179 55.000 0.11 0.11 46.33 4.35
2973 7834 1.922447 TGTTGGCTCCCACATATTCCT 59.078 47.619 0.00 0.00 30.78 3.36
2978 7839 0.258484 CCCATGTTGGCTCCCACATA 59.742 55.000 5.44 0.00 35.79 2.29
2986 7847 1.595311 TCTGGATACCCATGTTGGCT 58.405 50.000 0.00 0.00 42.59 4.75
3033 7894 2.022764 TGCATACATGACCAAGACGG 57.977 50.000 0.00 0.00 42.50 4.79
3048 7909 1.224592 GGGTTCGGGAGACATGCAT 59.775 57.895 0.00 0.00 39.59 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.