Multiple sequence alignment - TraesCS4B01G219600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4B01G219600 chr4B 100.000 5193 0 0 1 5193 462215260 462220452 0.000000e+00 9590.0
1 TraesCS4B01G219600 chr4B 100.000 37 0 0 4342 4378 462219563 462219599 9.330000e-08 69.4
2 TraesCS4B01G219600 chr4B 100.000 37 0 0 4304 4340 462219601 462219637 9.330000e-08 69.4
3 TraesCS4B01G219600 chr4A 92.189 2202 130 24 1 2192 89445385 89443216 0.000000e+00 3075.0
4 TraesCS4B01G219600 chr4A 88.905 694 19 20 2192 2843 89443177 89442500 0.000000e+00 802.0
5 TraesCS4B01G219600 chr4A 93.412 425 15 6 3684 4105 89442032 89441618 7.390000e-173 617.0
6 TraesCS4B01G219600 chr4A 87.104 473 33 12 4351 4809 89441361 89440903 1.290000e-140 510.0
7 TraesCS4B01G219600 chr4A 92.898 352 19 2 2870 3216 89442503 89442153 1.670000e-139 507.0
8 TraesCS4B01G219600 chr4A 93.438 320 8 4 4874 5181 89438611 89438293 3.660000e-126 462.0
9 TraesCS4B01G219600 chr4D 92.440 1336 74 11 1 1329 375122620 375123935 0.000000e+00 1882.0
10 TraesCS4B01G219600 chr4D 89.748 1073 49 24 2187 3216 375125002 375126056 0.000000e+00 1315.0
11 TraesCS4B01G219600 chr4D 93.750 848 41 5 1349 2187 375124120 375124964 0.000000e+00 1262.0
12 TraesCS4B01G219600 chr4D 88.404 664 48 15 3704 4340 375126178 375126839 0.000000e+00 773.0
13 TraesCS4B01G219600 chr4D 94.163 257 13 1 4342 4596 375126803 375127059 1.750000e-104 390.0
14 TraesCS4B01G219600 chr4D 93.991 233 11 2 4855 5084 375128553 375128785 2.980000e-92 350.0
15 TraesCS4B01G219600 chr4D 95.349 172 5 1 4677 4848 375127123 375127291 2.380000e-68 270.0
16 TraesCS4B01G219600 chr4D 96.124 129 1 2 5060 5185 375128811 375128938 1.900000e-49 207.0
17 TraesCS4B01G219600 chr4D 89.062 64 2 4 3639 3701 489181788 489181847 2.010000e-09 75.0
18 TraesCS4B01G219600 chr7A 98.658 298 3 1 3213 3509 94931187 94931484 1.280000e-145 527.0
19 TraesCS4B01G219600 chr7A 94.754 305 14 2 3206 3509 265036817 265037120 1.690000e-129 473.0
20 TraesCS4B01G219600 chr6D 95.738 305 11 2 3206 3509 199150293 199149990 1.680000e-134 490.0
21 TraesCS4B01G219600 chr6D 95.745 47 2 0 3638 3684 105820729 105820683 5.580000e-10 76.8
22 TraesCS4B01G219600 chr2A 95.114 307 13 2 3206 3511 500840943 500841248 2.810000e-132 483.0
23 TraesCS4B01G219600 chr2A 95.114 307 13 2 3206 3511 538485926 538485621 2.810000e-132 483.0
24 TraesCS4B01G219600 chr3D 95.960 297 10 2 3214 3509 511669001 511669296 1.010000e-131 481.0
25 TraesCS4B01G219600 chr3D 94.516 310 15 2 3200 3508 175434376 175434068 1.310000e-130 477.0
26 TraesCS4B01G219600 chr3D 88.710 62 5 2 3617 3677 527667439 527667499 2.010000e-09 75.0
27 TraesCS4B01G219600 chr3A 94.788 307 14 2 3206 3511 223632382 223632077 1.310000e-130 477.0
28 TraesCS4B01G219600 chr3A 90.323 62 4 2 3617 3677 662396696 662396756 4.310000e-11 80.5
29 TraesCS4B01G219600 chr2D 95.050 303 13 2 3214 3515 488313455 488313756 4.710000e-130 475.0
30 TraesCS4B01G219600 chr2D 92.000 50 3 1 3639 3687 49392827 49392778 9.330000e-08 69.4
31 TraesCS4B01G219600 chr3B 90.000 60 6 0 3618 3677 697901171 697901230 1.550000e-10 78.7
32 TraesCS4B01G219600 chr1B 95.745 47 2 0 3639 3685 621061916 621061962 5.580000e-10 76.8
33 TraesCS4B01G219600 chr6B 100.000 40 0 0 3638 3677 192350314 192350275 2.010000e-09 75.0
34 TraesCS4B01G219600 chr1D 95.455 44 2 0 3634 3677 467523570 467523613 2.590000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4B01G219600 chr4B 462215260 462220452 5192 False 3242.933333 9590 100.000000 1 5193 3 chr4B.!!$F1 5192
1 TraesCS4B01G219600 chr4A 89438293 89445385 7092 True 995.500000 3075 91.324333 1 5181 6 chr4A.!!$R1 5180
2 TraesCS4B01G219600 chr4D 375122620 375128938 6318 False 806.125000 1882 92.996125 1 5185 8 chr4D.!!$F2 5184

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
914 923 0.248990 CTGCGGCAAAGAAAACTGCA 60.249 50.0 3.44 0.0 43.16 4.41 F
2160 2347 0.741915 AAAAACGGTGTGGCGTGATT 59.258 45.0 0.00 0.0 0.00 2.57 F
2944 3240 0.910088 GAGGTACAGGAGGGGCTGTT 60.910 60.0 0.00 0.0 35.26 3.16 F
3238 3539 0.033090 CTCCGTCCGGGTTATTAGGC 59.967 60.0 0.00 0.0 37.00 3.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2544 2773 1.320507 TTTTGGTCGGGCAAACCTAC 58.679 50.0 8.72 0.00 37.69 3.18 R
3222 3523 0.033090 GAGGCCTAATAACCCGGACG 59.967 60.0 4.42 0.00 0.00 4.79 R
4184 4536 0.106708 TGTTTCCGCTCTCAGCTGTT 59.893 50.0 14.67 0.00 39.60 3.16 R
4255 4621 0.111878 CGTTGTAACAGCGACACGTG 60.112 55.0 15.48 15.48 40.32 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 3.827876 ACACATTTGATCATGGTCAGCAA 59.172 39.130 9.00 1.95 0.00 3.91
97 98 1.200483 CAAGTATGGAGTAGCGCACG 58.800 55.000 11.47 0.00 0.00 5.34
128 129 5.163195 ACTGGGATGTAGTAATAGCCAAAGG 60.163 44.000 0.00 0.00 0.00 3.11
136 137 3.521937 AGTAATAGCCAAAGGTAGCACCA 59.478 43.478 7.86 0.00 41.95 4.17
158 159 0.823356 GCAAGAACACCAGGGCAAGA 60.823 55.000 0.00 0.00 0.00 3.02
194 195 6.614694 TCTAAAGCCACAATCAGGTAGTTA 57.385 37.500 0.00 0.00 0.00 2.24
195 196 7.011499 TCTAAAGCCACAATCAGGTAGTTAA 57.989 36.000 0.00 0.00 0.00 2.01
196 197 7.630082 TCTAAAGCCACAATCAGGTAGTTAAT 58.370 34.615 0.00 0.00 0.00 1.40
197 198 8.107095 TCTAAAGCCACAATCAGGTAGTTAATT 58.893 33.333 0.00 0.00 0.00 1.40
282 283 3.531538 ACAATAGCAACCACCGTATCAG 58.468 45.455 0.00 0.00 0.00 2.90
308 309 7.255942 GGGCAATTATCCAGCAAACATAGTAAT 60.256 37.037 0.00 0.00 0.00 1.89
313 314 4.339748 TCCAGCAAACATAGTAATGGCAA 58.660 39.130 0.00 0.00 37.43 4.52
335 337 7.095060 GGCAAAATTCTATTAGCATCAGATCGA 60.095 37.037 0.00 0.00 0.00 3.59
337 339 7.573916 AAATTCTATTAGCATCAGATCGACG 57.426 36.000 0.00 0.00 0.00 5.12
341 343 6.600350 TCTATTAGCATCAGATCGACGTAAC 58.400 40.000 0.00 0.00 0.00 2.50
342 344 2.493713 AGCATCAGATCGACGTAACC 57.506 50.000 0.00 0.00 0.00 2.85
343 345 1.067212 AGCATCAGATCGACGTAACCC 59.933 52.381 0.00 0.00 0.00 4.11
344 346 1.067212 GCATCAGATCGACGTAACCCT 59.933 52.381 0.00 0.00 0.00 4.34
345 347 2.292569 GCATCAGATCGACGTAACCCTA 59.707 50.000 0.00 0.00 0.00 3.53
349 351 4.965814 TCAGATCGACGTAACCCTACTAT 58.034 43.478 0.00 0.00 0.00 2.12
350 352 4.753610 TCAGATCGACGTAACCCTACTATG 59.246 45.833 0.00 0.00 0.00 2.23
680 683 2.526873 AGGGACAGCACCTCCGTT 60.527 61.111 0.00 0.00 31.01 4.44
804 811 4.988065 GCAGGTAGCACAAGTCGA 57.012 55.556 0.00 0.00 44.79 4.20
805 812 2.743195 GCAGGTAGCACAAGTCGAG 58.257 57.895 0.00 0.00 44.79 4.04
806 813 0.737715 GCAGGTAGCACAAGTCGAGG 60.738 60.000 0.00 0.00 44.79 4.63
807 814 0.603569 CAGGTAGCACAAGTCGAGGT 59.396 55.000 0.00 0.00 0.00 3.85
808 815 1.000955 CAGGTAGCACAAGTCGAGGTT 59.999 52.381 0.00 0.00 0.00 3.50
811 818 1.194772 GTAGCACAAGTCGAGGTTTGC 59.805 52.381 4.63 3.19 0.00 3.68
823 830 2.609459 CGAGGTTTGCTTGCTATGGTAG 59.391 50.000 0.00 0.00 0.00 3.18
827 834 4.884164 AGGTTTGCTTGCTATGGTAGATTC 59.116 41.667 0.00 0.00 0.00 2.52
834 841 5.422666 TTGCTATGGTAGATTCGCAAATG 57.577 39.130 0.00 0.00 34.82 2.32
843 851 3.088532 AGATTCGCAAATGCACCCTTTA 58.911 40.909 6.18 0.00 42.21 1.85
858 866 6.542370 TGCACCCTTTACTATGAAGCTTATTC 59.458 38.462 0.00 0.00 0.00 1.75
859 867 6.017026 GCACCCTTTACTATGAAGCTTATTCC 60.017 42.308 0.00 0.00 0.00 3.01
863 871 7.599245 CCCTTTACTATGAAGCTTATTCCGTAG 59.401 40.741 0.00 4.79 0.00 3.51
873 882 4.283722 AGCTTATTCCGTAGATACCCCTTG 59.716 45.833 0.00 0.00 0.00 3.61
874 883 4.040095 GCTTATTCCGTAGATACCCCTTGT 59.960 45.833 0.00 0.00 0.00 3.16
877 886 1.572415 TCCGTAGATACCCCTTGTCCT 59.428 52.381 0.00 0.00 0.00 3.85
889 898 2.159085 CCCTTGTCCTAGTAAAGCCTCG 60.159 54.545 0.00 0.00 0.00 4.63
894 903 0.751452 CCTAGTAAAGCCTCGGGGAC 59.249 60.000 4.80 0.00 33.58 4.46
912 921 0.385390 ACCTGCGGCAAAGAAAACTG 59.615 50.000 3.44 0.00 0.00 3.16
914 923 0.248990 CTGCGGCAAAGAAAACTGCA 60.249 50.000 3.44 0.00 43.16 4.41
945 955 3.672867 GGTTATGTGCAAAACATCCGTTG 59.327 43.478 9.32 0.00 44.51 4.10
946 956 2.437200 ATGTGCAAAACATCCGTTGG 57.563 45.000 0.00 0.00 44.51 3.77
967 977 0.968901 TTCCGCTTTCGCTCCTAGGA 60.969 55.000 11.98 11.98 0.00 2.94
972 982 2.962697 CTTTCGCTCCTAGGAGGCGC 62.963 65.000 34.75 23.01 42.48 6.53
1077 1087 4.802051 GAGGATGCTGGGGCGCAA 62.802 66.667 10.83 0.00 44.06 4.85
1095 1105 2.938838 CAAGTCGAGGAGGGAGATACT 58.061 52.381 0.00 0.00 0.00 2.12
1170 1180 2.044946 GGCCACTTCATCCGCCTT 60.045 61.111 0.00 0.00 38.41 4.35
1262 1272 7.282450 ACTTGTTTATCGATTGACCCCTAATTC 59.718 37.037 1.71 0.00 0.00 2.17
1355 1531 1.067516 CCCTTTGTTCAGCACAAGTGG 59.932 52.381 2.00 1.79 46.37 4.00
1451 1627 7.426929 AGATTGCTAGCATAAAAGTATTCCG 57.573 36.000 20.13 0.00 0.00 4.30
1491 1667 7.092802 TGCCATAACCTGTTACATTAGGAAGTA 60.093 37.037 0.00 0.00 37.52 2.24
1492 1668 7.771826 GCCATAACCTGTTACATTAGGAAGTAA 59.228 37.037 0.00 0.00 37.52 2.24
1494 1670 8.827677 CATAACCTGTTACATTAGGAAGTAAGC 58.172 37.037 0.00 0.00 37.52 3.09
1531 1707 7.783090 TTTCTCTATCTGAAGAATGATGCAC 57.217 36.000 0.00 0.00 0.00 4.57
2033 2220 2.362889 GTGGTGGAATGCAGGGGG 60.363 66.667 0.00 0.00 0.00 5.40
2085 2272 3.763360 CCATTTGCATGGGTAAGTCTTCA 59.237 43.478 0.00 0.00 45.99 3.02
2160 2347 0.741915 AAAAACGGTGTGGCGTGATT 59.258 45.000 0.00 0.00 0.00 2.57
2183 2370 1.609072 CTGATGCTCATGCCCATCAAG 59.391 52.381 20.94 14.42 44.97 3.02
2342 2569 4.461198 GGAATAATCCGATGAAACAGGGT 58.539 43.478 0.00 0.00 35.59 4.34
2343 2570 5.617252 GGAATAATCCGATGAAACAGGGTA 58.383 41.667 0.00 0.00 35.59 3.69
2344 2571 5.469084 GGAATAATCCGATGAAACAGGGTAC 59.531 44.000 0.00 0.00 35.59 3.34
2345 2572 5.888982 ATAATCCGATGAAACAGGGTACT 57.111 39.130 0.00 0.00 0.00 2.73
2346 2573 3.821421 ATCCGATGAAACAGGGTACTC 57.179 47.619 0.00 0.00 0.00 2.59
2347 2574 1.829222 TCCGATGAAACAGGGTACTCC 59.171 52.381 0.00 0.00 0.00 3.85
2520 2749 7.129457 TCTGTAGTATCTCTTTGCCATGATT 57.871 36.000 0.00 0.00 0.00 2.57
2532 2761 9.806203 CTCTTTGCCATGATTTATAAATGTTCA 57.194 29.630 15.39 8.71 0.00 3.18
2535 2764 7.894753 TGCCATGATTTATAAATGTTCAGGA 57.105 32.000 15.39 0.00 0.00 3.86
2536 2765 8.481492 TGCCATGATTTATAAATGTTCAGGAT 57.519 30.769 15.39 0.00 0.00 3.24
2537 2766 8.361889 TGCCATGATTTATAAATGTTCAGGATG 58.638 33.333 15.39 4.44 37.54 3.51
2539 2768 9.687210 CCATGATTTATAAATGTTCAGGATGTG 57.313 33.333 15.39 3.83 37.40 3.21
2564 2809 1.890489 GTAGGTTTGCCCGACCAAAAT 59.110 47.619 2.68 0.00 39.71 1.82
2672 2917 6.128553 GCGACAAGTTTACTTCTTCATCATGA 60.129 38.462 0.00 0.00 33.11 3.07
2696 2941 3.633986 ACTAAGCAGCCATAAATCAAGCC 59.366 43.478 0.00 0.00 0.00 4.35
2700 2945 4.477249 AGCAGCCATAAATCAAGCCTTAT 58.523 39.130 0.00 0.00 0.00 1.73
2709 2972 7.229306 CCATAAATCAAGCCTTATCTGCAACTA 59.771 37.037 0.00 0.00 0.00 2.24
2717 2980 6.292150 AGCCTTATCTGCAACTATTTAGTCC 58.708 40.000 0.00 0.00 34.99 3.85
2747 3010 8.732746 TTGAGTAATTAATGCTTTAGTCCCTC 57.267 34.615 0.00 0.00 30.16 4.30
2843 3139 6.877611 TTCTTTGAACAAAGTAGCCTTAGG 57.122 37.500 21.39 0.00 45.88 2.69
2844 3140 4.760204 TCTTTGAACAAAGTAGCCTTAGGC 59.240 41.667 16.67 16.67 46.72 3.93
2856 3152 3.543680 GCCTTAGGCTGTTAGATGTGA 57.456 47.619 17.16 0.00 46.69 3.58
2857 3153 4.078639 GCCTTAGGCTGTTAGATGTGAT 57.921 45.455 17.16 0.00 46.69 3.06
2858 3154 3.812053 GCCTTAGGCTGTTAGATGTGATG 59.188 47.826 17.16 0.00 46.69 3.07
2859 3155 4.684485 GCCTTAGGCTGTTAGATGTGATGT 60.684 45.833 17.16 0.00 46.69 3.06
2860 3156 5.431765 CCTTAGGCTGTTAGATGTGATGTT 58.568 41.667 0.00 0.00 0.00 2.71
2861 3157 5.882557 CCTTAGGCTGTTAGATGTGATGTTT 59.117 40.000 0.00 0.00 0.00 2.83
2862 3158 6.037610 CCTTAGGCTGTTAGATGTGATGTTTC 59.962 42.308 0.00 0.00 0.00 2.78
2863 3159 4.910195 AGGCTGTTAGATGTGATGTTTCA 58.090 39.130 0.00 0.00 0.00 2.69
2864 3160 5.503927 AGGCTGTTAGATGTGATGTTTCAT 58.496 37.500 0.00 0.00 33.56 2.57
2865 3161 5.948162 AGGCTGTTAGATGTGATGTTTCATT 59.052 36.000 0.00 0.00 33.56 2.57
2866 3162 6.032094 GGCTGTTAGATGTGATGTTTCATTG 58.968 40.000 0.00 0.00 33.56 2.82
2867 3163 6.349611 GGCTGTTAGATGTGATGTTTCATTGT 60.350 38.462 0.00 0.00 33.56 2.71
2868 3164 6.525628 GCTGTTAGATGTGATGTTTCATTGTG 59.474 38.462 0.00 0.00 33.56 3.33
2869 3165 7.509141 TGTTAGATGTGATGTTTCATTGTGT 57.491 32.000 0.00 0.00 33.56 3.72
2870 3166 7.939782 TGTTAGATGTGATGTTTCATTGTGTT 58.060 30.769 0.00 0.00 33.56 3.32
2871 3167 9.061435 TGTTAGATGTGATGTTTCATTGTGTTA 57.939 29.630 0.00 0.00 33.56 2.41
2872 3168 9.891828 GTTAGATGTGATGTTTCATTGTGTTAA 57.108 29.630 0.00 0.00 33.56 2.01
2944 3240 0.910088 GAGGTACAGGAGGGGCTGTT 60.910 60.000 0.00 0.00 35.26 3.16
2996 3297 3.064958 CGTCTATTCTCCTGCTTACGTCA 59.935 47.826 0.00 0.00 0.00 4.35
3004 3305 3.271729 TCCTGCTTACGTCAGAGAGTAG 58.728 50.000 0.00 0.00 33.54 2.57
3074 3375 6.672266 AGACTTGAACTCTCAATCTTACCA 57.328 37.500 0.00 0.00 40.78 3.25
3149 3450 9.622004 GCTTCCAAGTTTAAAGGATAAAACTAC 57.378 33.333 1.26 0.00 43.35 2.73
3175 3476 6.172136 ACTTGAGAGATTATGTGGATCCTG 57.828 41.667 14.23 0.00 0.00 3.86
3186 3487 9.956720 GATTATGTGGATCCTGTTCTTAAATTG 57.043 33.333 14.23 0.00 0.00 2.32
3187 3488 9.699410 ATTATGTGGATCCTGTTCTTAAATTGA 57.301 29.630 14.23 0.00 0.00 2.57
3212 3513 5.939883 TGCTGCATGGGTTATGAACTATATC 59.060 40.000 0.00 0.00 39.21 1.63
3216 3517 8.435931 TGCATGGGTTATGAACTATATCTACT 57.564 34.615 0.00 0.00 39.21 2.57
3217 3518 8.531982 TGCATGGGTTATGAACTATATCTACTC 58.468 37.037 0.00 0.00 39.21 2.59
3218 3519 7.982354 GCATGGGTTATGAACTATATCTACTCC 59.018 40.741 0.00 0.00 39.21 3.85
3220 3521 7.776745 TGGGTTATGAACTATATCTACTCCCT 58.223 38.462 0.00 0.00 0.00 4.20
3221 3522 7.894364 TGGGTTATGAACTATATCTACTCCCTC 59.106 40.741 0.00 0.00 0.00 4.30
3222 3523 7.342541 GGGTTATGAACTATATCTACTCCCTCC 59.657 44.444 0.00 0.00 0.00 4.30
3223 3524 7.067251 GGTTATGAACTATATCTACTCCCTCCG 59.933 44.444 0.00 0.00 0.00 4.63
3224 3525 5.579753 TGAACTATATCTACTCCCTCCGT 57.420 43.478 0.00 0.00 0.00 4.69
3225 3526 5.558818 TGAACTATATCTACTCCCTCCGTC 58.441 45.833 0.00 0.00 0.00 4.79
3226 3527 4.573021 ACTATATCTACTCCCTCCGTCC 57.427 50.000 0.00 0.00 0.00 4.79
3227 3528 2.493414 ATATCTACTCCCTCCGTCCG 57.507 55.000 0.00 0.00 0.00 4.79
3228 3529 0.399454 TATCTACTCCCTCCGTCCGG 59.601 60.000 0.00 0.00 0.00 5.14
3229 3530 2.354755 ATCTACTCCCTCCGTCCGGG 62.355 65.000 0.00 0.00 43.38 5.73
3230 3531 3.341629 TACTCCCTCCGTCCGGGT 61.342 66.667 0.00 0.00 42.56 5.28
3231 3532 2.850828 CTACTCCCTCCGTCCGGGTT 62.851 65.000 0.00 0.00 42.56 4.11
3232 3533 1.570857 TACTCCCTCCGTCCGGGTTA 61.571 60.000 0.00 0.00 42.56 2.85
3233 3534 1.457079 CTCCCTCCGTCCGGGTTAT 60.457 63.158 0.00 0.00 42.56 1.89
3234 3535 1.002017 TCCCTCCGTCCGGGTTATT 59.998 57.895 0.00 0.00 42.56 1.40
3235 3536 0.261402 TCCCTCCGTCCGGGTTATTA 59.739 55.000 0.00 0.00 42.56 0.98
3236 3537 0.677842 CCCTCCGTCCGGGTTATTAG 59.322 60.000 0.00 0.00 36.91 1.73
3237 3538 0.677842 CCTCCGTCCGGGTTATTAGG 59.322 60.000 0.00 0.19 37.00 2.69
3238 3539 0.033090 CTCCGTCCGGGTTATTAGGC 59.967 60.000 0.00 0.00 37.00 3.93
3239 3540 1.070275 CCGTCCGGGTTATTAGGCC 59.930 63.158 0.00 0.00 0.00 5.19
3240 3541 1.405272 CCGTCCGGGTTATTAGGCCT 61.405 60.000 11.78 11.78 0.00 5.19
3241 3542 0.033090 CGTCCGGGTTATTAGGCCTC 59.967 60.000 9.68 0.00 0.00 4.70
3242 3543 1.421480 GTCCGGGTTATTAGGCCTCT 58.579 55.000 9.68 0.00 0.00 3.69
3243 3544 1.767088 GTCCGGGTTATTAGGCCTCTT 59.233 52.381 9.68 0.00 0.00 2.85
3244 3545 2.967887 GTCCGGGTTATTAGGCCTCTTA 59.032 50.000 9.68 0.00 0.00 2.10
3245 3546 3.006644 GTCCGGGTTATTAGGCCTCTTAG 59.993 52.174 9.68 0.00 0.00 2.18
3246 3547 2.289506 CCGGGTTATTAGGCCTCTTAGC 60.290 54.545 9.68 4.19 0.00 3.09
3247 3548 2.367567 CGGGTTATTAGGCCTCTTAGCA 59.632 50.000 9.68 0.00 0.00 3.49
3248 3549 3.008049 CGGGTTATTAGGCCTCTTAGCAT 59.992 47.826 9.68 0.00 0.00 3.79
3249 3550 4.580868 GGGTTATTAGGCCTCTTAGCATC 58.419 47.826 9.68 0.00 0.00 3.91
3250 3551 4.041691 GGGTTATTAGGCCTCTTAGCATCA 59.958 45.833 9.68 0.00 0.00 3.07
3251 3552 4.998033 GGTTATTAGGCCTCTTAGCATCAC 59.002 45.833 9.68 0.00 0.00 3.06
3252 3553 5.454755 GGTTATTAGGCCTCTTAGCATCACA 60.455 44.000 9.68 0.00 0.00 3.58
3253 3554 4.778213 ATTAGGCCTCTTAGCATCACAA 57.222 40.909 9.68 0.00 0.00 3.33
3254 3555 2.706339 AGGCCTCTTAGCATCACAAG 57.294 50.000 0.00 0.00 0.00 3.16
3255 3556 1.020437 GGCCTCTTAGCATCACAAGC 58.980 55.000 0.00 0.00 0.00 4.01
3256 3557 1.679944 GGCCTCTTAGCATCACAAGCA 60.680 52.381 0.00 0.00 0.00 3.91
3257 3558 2.295885 GCCTCTTAGCATCACAAGCAT 58.704 47.619 0.00 0.00 0.00 3.79
3258 3559 2.033049 GCCTCTTAGCATCACAAGCATG 59.967 50.000 0.00 0.00 0.00 4.06
3259 3560 3.276857 CCTCTTAGCATCACAAGCATGT 58.723 45.455 0.00 0.00 41.61 3.21
3260 3561 3.311871 CCTCTTAGCATCACAAGCATGTC 59.688 47.826 0.00 0.00 37.82 3.06
3261 3562 3.273434 TCTTAGCATCACAAGCATGTCC 58.727 45.455 0.00 0.00 37.82 4.02
3262 3563 2.042686 TAGCATCACAAGCATGTCCC 57.957 50.000 0.00 0.00 37.82 4.46
3263 3564 0.330604 AGCATCACAAGCATGTCCCT 59.669 50.000 0.00 0.00 37.82 4.20
3264 3565 1.180029 GCATCACAAGCATGTCCCTT 58.820 50.000 0.00 0.00 37.82 3.95
3265 3566 1.547372 GCATCACAAGCATGTCCCTTT 59.453 47.619 0.00 0.00 37.82 3.11
3266 3567 2.028748 GCATCACAAGCATGTCCCTTTT 60.029 45.455 0.00 0.00 37.82 2.27
3267 3568 3.555586 GCATCACAAGCATGTCCCTTTTT 60.556 43.478 0.00 0.00 37.82 1.94
3268 3569 4.321899 GCATCACAAGCATGTCCCTTTTTA 60.322 41.667 0.00 0.00 37.82 1.52
3269 3570 5.625197 GCATCACAAGCATGTCCCTTTTTAT 60.625 40.000 0.00 0.00 37.82 1.40
3270 3571 6.405731 GCATCACAAGCATGTCCCTTTTTATA 60.406 38.462 0.00 0.00 37.82 0.98
3271 3572 7.546358 CATCACAAGCATGTCCCTTTTTATAA 58.454 34.615 0.00 0.00 37.82 0.98
3272 3573 7.156876 TCACAAGCATGTCCCTTTTTATAAG 57.843 36.000 0.00 0.00 37.82 1.73
3273 3574 6.152661 TCACAAGCATGTCCCTTTTTATAAGG 59.847 38.462 0.00 0.00 37.82 2.69
3274 3575 5.105351 ACAAGCATGTCCCTTTTTATAAGGC 60.105 40.000 0.00 0.00 33.41 4.35
3275 3576 3.960755 AGCATGTCCCTTTTTATAAGGCC 59.039 43.478 0.00 0.00 36.10 5.19
3276 3577 3.960755 GCATGTCCCTTTTTATAAGGCCT 59.039 43.478 0.00 0.00 36.10 5.19
3277 3578 4.038042 GCATGTCCCTTTTTATAAGGCCTC 59.962 45.833 5.23 0.00 36.10 4.70
3278 3579 3.881220 TGTCCCTTTTTATAAGGCCTCG 58.119 45.455 5.23 0.00 36.10 4.63
3279 3580 2.617308 GTCCCTTTTTATAAGGCCTCGC 59.383 50.000 5.23 0.00 36.10 5.03
3280 3581 2.508300 TCCCTTTTTATAAGGCCTCGCT 59.492 45.455 5.23 0.00 36.10 4.93
3281 3582 3.053917 TCCCTTTTTATAAGGCCTCGCTT 60.054 43.478 5.23 0.00 36.10 4.68
3282 3583 3.699538 CCCTTTTTATAAGGCCTCGCTTT 59.300 43.478 5.23 0.00 36.10 3.51
3283 3584 4.440112 CCCTTTTTATAAGGCCTCGCTTTG 60.440 45.833 5.23 0.00 36.10 2.77
3284 3585 4.440112 CCTTTTTATAAGGCCTCGCTTTGG 60.440 45.833 5.23 0.00 0.00 3.28
3285 3586 3.637911 TTTATAAGGCCTCGCTTTGGA 57.362 42.857 5.23 0.00 0.00 3.53
3286 3587 3.637911 TTATAAGGCCTCGCTTTGGAA 57.362 42.857 5.23 0.00 0.00 3.53
3287 3588 2.507407 ATAAGGCCTCGCTTTGGAAA 57.493 45.000 5.23 0.00 0.00 3.13
3288 3589 1.821216 TAAGGCCTCGCTTTGGAAAG 58.179 50.000 5.23 0.00 39.03 2.62
3289 3590 0.895559 AAGGCCTCGCTTTGGAAAGG 60.896 55.000 5.23 0.00 36.53 3.11
3290 3591 1.603739 GGCCTCGCTTTGGAAAGGT 60.604 57.895 0.00 0.00 36.53 3.50
3291 3592 1.581447 GCCTCGCTTTGGAAAGGTG 59.419 57.895 1.45 0.00 36.53 4.00
3292 3593 1.581447 CCTCGCTTTGGAAAGGTGC 59.419 57.895 1.45 0.00 36.53 5.01
3293 3594 1.172180 CCTCGCTTTGGAAAGGTGCA 61.172 55.000 1.45 0.00 36.53 4.57
3294 3595 0.883833 CTCGCTTTGGAAAGGTGCAT 59.116 50.000 0.00 0.00 36.53 3.96
3295 3596 0.597568 TCGCTTTGGAAAGGTGCATG 59.402 50.000 0.00 0.00 36.53 4.06
3296 3597 1.010419 CGCTTTGGAAAGGTGCATGC 61.010 55.000 11.82 11.82 36.53 4.06
3297 3598 0.033781 GCTTTGGAAAGGTGCATGCA 59.966 50.000 18.46 18.46 36.53 3.96
3298 3599 1.338389 GCTTTGGAAAGGTGCATGCAT 60.338 47.619 25.64 7.59 36.53 3.96
3299 3600 2.343101 CTTTGGAAAGGTGCATGCATG 58.657 47.619 25.64 22.70 32.40 4.06
3300 3601 3.502678 CTTTGGAAAGGTGCATGCATGC 61.503 50.000 38.71 38.71 41.84 4.06
3313 3614 4.271590 CATGCATGCAACCATTTCATTG 57.728 40.909 26.68 10.40 0.00 2.82
3314 3615 2.701107 TGCATGCAACCATTTCATTGG 58.299 42.857 20.30 0.00 42.82 3.16
3325 3626 5.943706 CCATTTCATTGGTTGCATTGAAA 57.056 34.783 0.00 0.00 40.99 2.69
3326 3627 5.933790 CCATTTCATTGGTTGCATTGAAAG 58.066 37.500 1.50 0.00 40.32 2.62
3327 3628 5.470777 CCATTTCATTGGTTGCATTGAAAGT 59.529 36.000 1.50 0.00 40.32 2.66
3328 3629 6.347888 CCATTTCATTGGTTGCATTGAAAGTC 60.348 38.462 1.50 0.00 40.32 3.01
3329 3630 4.933505 TCATTGGTTGCATTGAAAGTCA 57.066 36.364 0.00 0.00 0.00 3.41
3330 3631 5.471556 TCATTGGTTGCATTGAAAGTCAT 57.528 34.783 0.00 0.00 0.00 3.06
3331 3632 5.856156 TCATTGGTTGCATTGAAAGTCATT 58.144 33.333 0.00 0.00 0.00 2.57
3332 3633 5.697178 TCATTGGTTGCATTGAAAGTCATTG 59.303 36.000 0.00 0.00 32.57 2.82
3333 3634 4.669206 TGGTTGCATTGAAAGTCATTGT 57.331 36.364 0.00 0.00 32.17 2.71
3334 3635 5.021033 TGGTTGCATTGAAAGTCATTGTT 57.979 34.783 0.00 0.00 32.17 2.83
3335 3636 4.809958 TGGTTGCATTGAAAGTCATTGTTG 59.190 37.500 0.00 0.00 32.17 3.33
3336 3637 4.810491 GGTTGCATTGAAAGTCATTGTTGT 59.190 37.500 0.00 0.00 32.17 3.32
3337 3638 5.294060 GGTTGCATTGAAAGTCATTGTTGTT 59.706 36.000 0.00 0.00 32.17 2.83
3338 3639 5.970140 TGCATTGAAAGTCATTGTTGTTG 57.030 34.783 0.00 0.00 32.17 3.33
3339 3640 4.809958 TGCATTGAAAGTCATTGTTGTTGG 59.190 37.500 0.00 0.00 32.17 3.77
3340 3641 4.810491 GCATTGAAAGTCATTGTTGTTGGT 59.190 37.500 0.00 0.00 32.17 3.67
3341 3642 5.276963 GCATTGAAAGTCATTGTTGTTGGTG 60.277 40.000 0.00 0.00 32.17 4.17
3342 3643 5.398603 TTGAAAGTCATTGTTGTTGGTGT 57.601 34.783 0.00 0.00 0.00 4.16
3343 3644 4.992688 TGAAAGTCATTGTTGTTGGTGTC 58.007 39.130 0.00 0.00 0.00 3.67
3344 3645 4.460731 TGAAAGTCATTGTTGTTGGTGTCA 59.539 37.500 0.00 0.00 0.00 3.58
3345 3646 5.126869 TGAAAGTCATTGTTGTTGGTGTCAT 59.873 36.000 0.00 0.00 0.00 3.06
3346 3647 4.572985 AGTCATTGTTGTTGGTGTCATG 57.427 40.909 0.00 0.00 0.00 3.07
3347 3648 3.318839 AGTCATTGTTGTTGGTGTCATGG 59.681 43.478 0.00 0.00 0.00 3.66
3348 3649 2.035704 TCATTGTTGTTGGTGTCATGGC 59.964 45.455 0.00 0.00 0.00 4.40
3349 3650 1.774110 TTGTTGTTGGTGTCATGGCT 58.226 45.000 0.00 0.00 0.00 4.75
3350 3651 1.031235 TGTTGTTGGTGTCATGGCTG 58.969 50.000 0.00 0.00 0.00 4.85
3351 3652 1.317613 GTTGTTGGTGTCATGGCTGA 58.682 50.000 0.00 0.00 0.00 4.26
3352 3653 1.680735 GTTGTTGGTGTCATGGCTGAA 59.319 47.619 0.00 0.00 31.85 3.02
3353 3654 2.064434 TGTTGGTGTCATGGCTGAAA 57.936 45.000 0.00 0.00 31.85 2.69
3354 3655 2.382882 TGTTGGTGTCATGGCTGAAAA 58.617 42.857 0.00 0.00 31.85 2.29
3355 3656 2.762887 TGTTGGTGTCATGGCTGAAAAA 59.237 40.909 0.00 0.00 31.85 1.94
3356 3657 3.387374 TGTTGGTGTCATGGCTGAAAAAT 59.613 39.130 0.00 0.00 31.85 1.82
3357 3658 4.141756 TGTTGGTGTCATGGCTGAAAAATT 60.142 37.500 0.00 0.00 31.85 1.82
3358 3659 5.069648 TGTTGGTGTCATGGCTGAAAAATTA 59.930 36.000 0.00 0.00 31.85 1.40
3359 3660 5.798125 TGGTGTCATGGCTGAAAAATTAA 57.202 34.783 0.00 0.00 31.85 1.40
3360 3661 6.357579 TGGTGTCATGGCTGAAAAATTAAT 57.642 33.333 0.00 0.00 31.85 1.40
3361 3662 7.473735 TGGTGTCATGGCTGAAAAATTAATA 57.526 32.000 0.00 0.00 31.85 0.98
3362 3663 7.319646 TGGTGTCATGGCTGAAAAATTAATAC 58.680 34.615 0.00 0.00 31.85 1.89
3363 3664 7.039434 TGGTGTCATGGCTGAAAAATTAATACA 60.039 33.333 0.00 0.00 31.85 2.29
3364 3665 7.275560 GGTGTCATGGCTGAAAAATTAATACAC 59.724 37.037 0.00 0.00 31.85 2.90
3365 3666 8.028938 GTGTCATGGCTGAAAAATTAATACACT 58.971 33.333 0.00 0.00 31.85 3.55
3366 3667 8.584157 TGTCATGGCTGAAAAATTAATACACTT 58.416 29.630 0.00 0.00 31.85 3.16
3367 3668 9.076596 GTCATGGCTGAAAAATTAATACACTTC 57.923 33.333 0.00 0.00 31.85 3.01
3368 3669 8.801299 TCATGGCTGAAAAATTAATACACTTCA 58.199 29.630 0.00 0.00 0.00 3.02
3369 3670 9.590451 CATGGCTGAAAAATTAATACACTTCAT 57.410 29.630 0.00 0.00 0.00 2.57
3370 3671 8.984891 TGGCTGAAAAATTAATACACTTCATG 57.015 30.769 0.00 0.00 0.00 3.07
3371 3672 8.584157 TGGCTGAAAAATTAATACACTTCATGT 58.416 29.630 0.00 0.00 46.06 3.21
3385 3686 5.969741 CACTTCATGTGTGCTTTTTCATTG 58.030 37.500 8.22 0.00 41.53 2.82
3386 3687 5.050634 CACTTCATGTGTGCTTTTTCATTGG 60.051 40.000 8.22 0.00 41.53 3.16
3387 3688 4.669206 TCATGTGTGCTTTTTCATTGGT 57.331 36.364 0.00 0.00 0.00 3.67
3388 3689 5.021033 TCATGTGTGCTTTTTCATTGGTT 57.979 34.783 0.00 0.00 0.00 3.67
3389 3690 4.809958 TCATGTGTGCTTTTTCATTGGTTG 59.190 37.500 0.00 0.00 0.00 3.77
3390 3691 2.935201 TGTGTGCTTTTTCATTGGTTGC 59.065 40.909 0.00 0.00 0.00 4.17
3391 3692 2.935201 GTGTGCTTTTTCATTGGTTGCA 59.065 40.909 0.00 0.00 0.00 4.08
3392 3693 3.560896 GTGTGCTTTTTCATTGGTTGCAT 59.439 39.130 0.00 0.00 0.00 3.96
3393 3694 3.560481 TGTGCTTTTTCATTGGTTGCATG 59.440 39.130 0.00 0.00 0.00 4.06
3394 3695 2.548904 TGCTTTTTCATTGGTTGCATGC 59.451 40.909 11.82 11.82 0.00 4.06
3395 3696 2.548904 GCTTTTTCATTGGTTGCATGCA 59.451 40.909 18.46 18.46 0.00 3.96
3396 3697 3.189702 GCTTTTTCATTGGTTGCATGCAT 59.810 39.130 23.37 2.36 0.00 3.96
3397 3698 4.717991 CTTTTTCATTGGTTGCATGCATG 58.282 39.130 23.37 22.70 0.00 4.06
3398 3699 3.404224 TTTCATTGGTTGCATGCATGT 57.596 38.095 26.79 3.11 0.00 3.21
3399 3700 2.371910 TCATTGGTTGCATGCATGTG 57.628 45.000 26.79 15.45 0.00 3.21
3400 3701 1.893801 TCATTGGTTGCATGCATGTGA 59.106 42.857 26.79 17.41 0.00 3.58
3401 3702 2.094442 TCATTGGTTGCATGCATGTGAG 60.094 45.455 26.79 10.45 0.00 3.51
3402 3703 1.618487 TTGGTTGCATGCATGTGAGA 58.382 45.000 26.79 1.46 0.00 3.27
3403 3704 1.170442 TGGTTGCATGCATGTGAGAG 58.830 50.000 26.79 1.59 0.00 3.20
3404 3705 1.271488 TGGTTGCATGCATGTGAGAGA 60.271 47.619 26.79 0.00 0.00 3.10
3405 3706 1.400846 GGTTGCATGCATGTGAGAGAG 59.599 52.381 26.79 0.03 0.00 3.20
3406 3707 2.082231 GTTGCATGCATGTGAGAGAGT 58.918 47.619 26.79 0.00 0.00 3.24
3407 3708 1.734163 TGCATGCATGTGAGAGAGTG 58.266 50.000 26.79 0.05 0.00 3.51
3408 3709 0.377554 GCATGCATGTGAGAGAGTGC 59.622 55.000 26.79 7.20 38.05 4.40
3411 3712 2.484742 TGCATGTGAGAGAGTGCATT 57.515 45.000 0.00 0.00 42.13 3.56
3412 3713 2.081462 TGCATGTGAGAGAGTGCATTG 58.919 47.619 0.00 0.00 42.13 2.82
3413 3714 1.400846 GCATGTGAGAGAGTGCATTGG 59.599 52.381 0.00 0.00 37.52 3.16
3414 3715 2.014857 CATGTGAGAGAGTGCATTGGG 58.985 52.381 0.00 0.00 0.00 4.12
3415 3716 1.351076 TGTGAGAGAGTGCATTGGGA 58.649 50.000 0.00 0.00 0.00 4.37
3416 3717 1.277273 TGTGAGAGAGTGCATTGGGAG 59.723 52.381 0.00 0.00 0.00 4.30
3417 3718 1.277557 GTGAGAGAGTGCATTGGGAGT 59.722 52.381 0.00 0.00 0.00 3.85
3418 3719 1.277273 TGAGAGAGTGCATTGGGAGTG 59.723 52.381 0.00 0.00 0.00 3.51
3419 3720 0.617413 AGAGAGTGCATTGGGAGTGG 59.383 55.000 0.00 0.00 0.00 4.00
3420 3721 0.615331 GAGAGTGCATTGGGAGTGGA 59.385 55.000 0.00 0.00 0.00 4.02
3421 3722 1.003580 GAGAGTGCATTGGGAGTGGAA 59.996 52.381 0.00 0.00 0.00 3.53
3422 3723 1.637553 AGAGTGCATTGGGAGTGGAAT 59.362 47.619 0.00 0.00 0.00 3.01
3423 3724 1.747355 GAGTGCATTGGGAGTGGAATG 59.253 52.381 0.00 0.00 33.46 2.67
3424 3725 0.819582 GTGCATTGGGAGTGGAATGG 59.180 55.000 0.00 0.00 31.38 3.16
3425 3726 0.703488 TGCATTGGGAGTGGAATGGA 59.297 50.000 0.00 0.00 31.38 3.41
3426 3727 1.076841 TGCATTGGGAGTGGAATGGAA 59.923 47.619 0.00 0.00 31.38 3.53
3427 3728 1.753073 GCATTGGGAGTGGAATGGAAG 59.247 52.381 0.00 0.00 31.38 3.46
3428 3729 2.621407 GCATTGGGAGTGGAATGGAAGA 60.621 50.000 0.00 0.00 31.38 2.87
3429 3730 3.700538 CATTGGGAGTGGAATGGAAGAA 58.299 45.455 0.00 0.00 0.00 2.52
3430 3731 4.284178 CATTGGGAGTGGAATGGAAGAAT 58.716 43.478 0.00 0.00 0.00 2.40
3431 3732 4.402616 TTGGGAGTGGAATGGAAGAATT 57.597 40.909 0.00 0.00 0.00 2.17
3432 3733 5.528600 TTGGGAGTGGAATGGAAGAATTA 57.471 39.130 0.00 0.00 0.00 1.40
3433 3734 5.528600 TGGGAGTGGAATGGAAGAATTAA 57.471 39.130 0.00 0.00 0.00 1.40
3434 3735 6.091076 TGGGAGTGGAATGGAAGAATTAAT 57.909 37.500 0.00 0.00 0.00 1.40
3435 3736 5.893255 TGGGAGTGGAATGGAAGAATTAATG 59.107 40.000 0.00 0.00 0.00 1.90
3436 3737 5.893824 GGGAGTGGAATGGAAGAATTAATGT 59.106 40.000 0.00 0.00 0.00 2.71
3437 3738 6.183360 GGGAGTGGAATGGAAGAATTAATGTG 60.183 42.308 0.00 0.00 0.00 3.21
3438 3739 6.603201 GGAGTGGAATGGAAGAATTAATGTGA 59.397 38.462 0.00 0.00 0.00 3.58
3439 3740 7.201767 GGAGTGGAATGGAAGAATTAATGTGAG 60.202 40.741 0.00 0.00 0.00 3.51
3440 3741 6.096001 AGTGGAATGGAAGAATTAATGTGAGC 59.904 38.462 0.00 0.00 0.00 4.26
3441 3742 5.951148 TGGAATGGAAGAATTAATGTGAGCA 59.049 36.000 0.00 0.00 0.00 4.26
3442 3743 6.436847 TGGAATGGAAGAATTAATGTGAGCAA 59.563 34.615 0.00 0.00 0.00 3.91
3443 3744 7.039152 TGGAATGGAAGAATTAATGTGAGCAAA 60.039 33.333 0.00 0.00 0.00 3.68
3444 3745 7.983484 GGAATGGAAGAATTAATGTGAGCAAAT 59.017 33.333 0.00 0.00 0.00 2.32
3445 3746 9.374838 GAATGGAAGAATTAATGTGAGCAAATT 57.625 29.630 0.00 0.00 0.00 1.82
3447 3748 9.807649 ATGGAAGAATTAATGTGAGCAAATTAC 57.192 29.630 0.00 0.00 0.00 1.89
3448 3749 9.023962 TGGAAGAATTAATGTGAGCAAATTACT 57.976 29.630 0.00 0.00 0.00 2.24
3459 3760 8.437360 TGTGAGCAAATTACTATATGTCTTGG 57.563 34.615 0.00 0.00 0.00 3.61
3460 3761 8.046708 TGTGAGCAAATTACTATATGTCTTGGT 58.953 33.333 0.00 0.00 0.00 3.67
3461 3762 9.542462 GTGAGCAAATTACTATATGTCTTGGTA 57.458 33.333 0.00 0.00 0.00 3.25
3476 3777 7.540474 TGTCTTGGTATAAGAGAAGTTGTCT 57.460 36.000 0.00 0.00 40.25 3.41
3477 3778 7.963532 TGTCTTGGTATAAGAGAAGTTGTCTT 58.036 34.615 18.27 18.27 36.41 3.01
3478 3779 8.429641 TGTCTTGGTATAAGAGAAGTTGTCTTT 58.570 33.333 19.27 10.48 36.41 2.52
3479 3780 9.924650 GTCTTGGTATAAGAGAAGTTGTCTTTA 57.075 33.333 19.27 9.64 36.41 1.85
3481 3782 9.372369 CTTGGTATAAGAGAAGTTGTCTTTAGG 57.628 37.037 19.27 2.19 36.41 2.69
3482 3783 7.328737 TGGTATAAGAGAAGTTGTCTTTAGGC 58.671 38.462 19.27 8.56 36.41 3.93
3483 3784 6.762187 GGTATAAGAGAAGTTGTCTTTAGGCC 59.238 42.308 19.27 12.87 36.41 5.19
3484 3785 4.984146 AAGAGAAGTTGTCTTTAGGCCT 57.016 40.909 11.78 11.78 36.41 5.19
3485 3786 7.735326 ATAAGAGAAGTTGTCTTTAGGCCTA 57.265 36.000 19.27 8.91 36.41 3.93
3486 3787 6.435292 AAGAGAAGTTGTCTTTAGGCCTAA 57.565 37.500 21.68 21.68 36.41 2.69
3487 3788 6.628644 AGAGAAGTTGTCTTTAGGCCTAAT 57.371 37.500 25.70 8.38 36.41 1.73
3488 3789 7.735326 AGAGAAGTTGTCTTTAGGCCTAATA 57.265 36.000 25.70 14.28 36.41 0.98
3489 3790 8.147244 AGAGAAGTTGTCTTTAGGCCTAATAA 57.853 34.615 25.70 13.92 36.41 1.40
3490 3791 8.603304 AGAGAAGTTGTCTTTAGGCCTAATAAA 58.397 33.333 25.70 12.32 36.41 1.40
3491 3792 8.563123 AGAAGTTGTCTTTAGGCCTAATAAAC 57.437 34.615 25.70 22.86 29.66 2.01
3492 3793 7.610692 AGAAGTTGTCTTTAGGCCTAATAAACC 59.389 37.037 25.70 12.16 29.66 3.27
3493 3794 6.185511 AGTTGTCTTTAGGCCTAATAAACCC 58.814 40.000 25.70 15.18 0.00 4.11
3494 3795 4.773013 TGTCTTTAGGCCTAATAAACCCG 58.227 43.478 25.70 8.69 0.00 5.28
3495 3796 4.132336 GTCTTTAGGCCTAATAAACCCGG 58.868 47.826 25.70 8.87 0.00 5.73
3496 3797 4.039339 TCTTTAGGCCTAATAAACCCGGA 58.961 43.478 25.70 6.80 0.00 5.14
3497 3798 3.843893 TTAGGCCTAATAAACCCGGAC 57.156 47.619 21.68 0.00 0.00 4.79
3498 3799 0.466963 AGGCCTAATAAACCCGGACG 59.533 55.000 1.29 0.00 0.00 4.79
3499 3800 0.533531 GGCCTAATAAACCCGGACGG 60.534 60.000 0.73 3.25 37.81 4.79
3500 3801 0.465287 GCCTAATAAACCCGGACGGA 59.535 55.000 13.13 0.00 37.50 4.69
3501 3802 1.539712 GCCTAATAAACCCGGACGGAG 60.540 57.143 13.13 5.04 37.50 4.63
3502 3803 1.069668 CCTAATAAACCCGGACGGAGG 59.930 57.143 13.13 5.18 37.50 4.30
3509 3810 3.207669 CCGGACGGAGGGAGTACG 61.208 72.222 4.40 0.00 44.88 3.67
3537 3838 8.137745 ACACATATGGTTGGAATTTGATTCTT 57.862 30.769 7.80 0.00 39.24 2.52
3580 3881 9.552114 CTGTCTTGCTTGATAAAAGATTACTTG 57.448 33.333 0.00 0.00 36.39 3.16
3605 3906 3.618690 AGTTGGTGAAGGATAGTGCTC 57.381 47.619 0.00 0.00 0.00 4.26
3622 3923 2.275318 GCTCCTGATGCTGTGAAGTAC 58.725 52.381 0.00 0.00 0.00 2.73
3623 3924 2.093764 GCTCCTGATGCTGTGAAGTACT 60.094 50.000 0.00 0.00 0.00 2.73
3624 3925 3.779759 CTCCTGATGCTGTGAAGTACTC 58.220 50.000 0.00 0.00 0.00 2.59
3625 3926 2.497675 TCCTGATGCTGTGAAGTACTCC 59.502 50.000 0.00 0.00 0.00 3.85
3626 3927 2.419297 CCTGATGCTGTGAAGTACTCCC 60.419 54.545 0.00 0.00 0.00 4.30
3627 3928 2.499289 CTGATGCTGTGAAGTACTCCCT 59.501 50.000 0.00 0.00 0.00 4.20
3628 3929 2.497675 TGATGCTGTGAAGTACTCCCTC 59.502 50.000 0.00 0.00 0.00 4.30
3629 3930 2.310779 TGCTGTGAAGTACTCCCTCT 57.689 50.000 0.00 0.00 0.00 3.69
3630 3931 1.895798 TGCTGTGAAGTACTCCCTCTG 59.104 52.381 0.00 0.00 0.00 3.35
3631 3932 1.205893 GCTGTGAAGTACTCCCTCTGG 59.794 57.143 0.00 0.00 0.00 3.86
3632 3933 2.808919 CTGTGAAGTACTCCCTCTGGA 58.191 52.381 0.00 0.00 38.75 3.86
3633 3934 2.494073 CTGTGAAGTACTCCCTCTGGAC 59.506 54.545 0.00 0.00 35.03 4.02
3634 3935 2.110188 TGTGAAGTACTCCCTCTGGACT 59.890 50.000 0.00 0.00 35.03 3.85
3635 3936 2.494073 GTGAAGTACTCCCTCTGGACTG 59.506 54.545 0.00 0.00 35.03 3.51
3636 3937 2.110188 TGAAGTACTCCCTCTGGACTGT 59.890 50.000 0.00 0.00 35.03 3.55
3637 3938 2.223803 AGTACTCCCTCTGGACTGTG 57.776 55.000 0.00 0.00 35.03 3.66
3638 3939 1.711375 AGTACTCCCTCTGGACTGTGA 59.289 52.381 0.00 0.00 35.03 3.58
3639 3940 2.110188 AGTACTCCCTCTGGACTGTGAA 59.890 50.000 0.00 0.00 35.03 3.18
3640 3941 1.638529 ACTCCCTCTGGACTGTGAAG 58.361 55.000 0.00 0.00 35.03 3.02
3641 3942 1.133009 ACTCCCTCTGGACTGTGAAGT 60.133 52.381 0.00 0.00 35.03 3.01
3642 3943 2.110188 ACTCCCTCTGGACTGTGAAGTA 59.890 50.000 0.00 0.00 35.03 2.24
3643 3944 2.757868 CTCCCTCTGGACTGTGAAGTAG 59.242 54.545 0.00 0.00 35.03 2.57
3644 3945 2.110188 TCCCTCTGGACTGTGAAGTAGT 59.890 50.000 0.00 0.00 35.03 2.73
3645 3946 2.232452 CCCTCTGGACTGTGAAGTAGTG 59.768 54.545 0.00 0.00 0.00 2.74
3646 3947 3.157881 CCTCTGGACTGTGAAGTAGTGA 58.842 50.000 0.00 0.00 0.00 3.41
3647 3948 3.766591 CCTCTGGACTGTGAAGTAGTGAT 59.233 47.826 0.00 0.00 0.00 3.06
3648 3949 4.142271 CCTCTGGACTGTGAAGTAGTGATC 60.142 50.000 0.00 0.00 0.00 2.92
3649 3950 4.667573 TCTGGACTGTGAAGTAGTGATCT 58.332 43.478 0.00 0.00 0.00 2.75
3650 3951 5.816682 TCTGGACTGTGAAGTAGTGATCTA 58.183 41.667 0.00 0.00 0.00 1.98
3651 3952 6.246163 TCTGGACTGTGAAGTAGTGATCTAA 58.754 40.000 0.00 0.00 0.00 2.10
3652 3953 6.719829 TCTGGACTGTGAAGTAGTGATCTAAA 59.280 38.462 0.00 0.00 0.00 1.85
3653 3954 7.232737 TCTGGACTGTGAAGTAGTGATCTAAAA 59.767 37.037 0.00 0.00 0.00 1.52
3654 3955 7.732025 TGGACTGTGAAGTAGTGATCTAAAAA 58.268 34.615 0.00 0.00 0.00 1.94
3655 3956 7.872993 TGGACTGTGAAGTAGTGATCTAAAAAG 59.127 37.037 0.00 0.00 0.00 2.27
3656 3957 7.873505 GGACTGTGAAGTAGTGATCTAAAAAGT 59.126 37.037 0.00 0.00 0.00 2.66
3657 3958 8.819643 ACTGTGAAGTAGTGATCTAAAAAGTC 57.180 34.615 0.00 0.00 0.00 3.01
3658 3959 8.643324 ACTGTGAAGTAGTGATCTAAAAAGTCT 58.357 33.333 0.00 0.00 0.00 3.24
3659 3960 9.482627 CTGTGAAGTAGTGATCTAAAAAGTCTT 57.517 33.333 0.00 0.00 0.00 3.01
3698 3999 9.972106 AGAGGTTGTACTAGTATTAGTTAGTGT 57.028 33.333 5.75 0.00 40.55 3.55
3738 4039 4.081406 TGCTGTTCTCCTTATGCAAACAT 58.919 39.130 0.00 0.00 40.49 2.71
3936 4238 6.961554 GGAGTACTAAAATTTCTGCGTGAATG 59.038 38.462 0.00 0.00 34.24 2.67
4000 4302 5.121454 GCATTAGTAAGCATGGATAGTGAGC 59.879 44.000 0.00 0.00 0.00 4.26
4032 4340 1.590591 TAGGCTGGCCCAGTATTTCA 58.409 50.000 13.35 0.00 36.58 2.69
4108 4460 2.349886 CCTGTTAGCTCATTCGTTCTGC 59.650 50.000 0.00 0.00 0.00 4.26
4129 4481 2.098934 CCTTTGCACTGCAGTAAACACA 59.901 45.455 21.20 10.35 40.61 3.72
4206 4558 2.157421 GCTGAGAGCGGAAACACTG 58.843 57.895 0.00 0.00 0.00 3.66
4212 4564 0.861837 GAGCGGAAACACTGTGTCAG 59.138 55.000 14.68 4.74 37.52 3.51
4227 4581 1.063806 GTCAGTGTGTTAGCTGCGAG 58.936 55.000 0.00 0.00 33.09 5.03
4228 4582 0.667487 TCAGTGTGTTAGCTGCGAGC 60.667 55.000 0.00 0.47 42.84 5.03
4249 4615 0.165944 GTCAATGCCGTCGACAAAGG 59.834 55.000 17.16 10.00 0.00 3.11
4255 4621 1.080025 CCGTCGACAAAGGAGGACC 60.080 63.158 17.16 0.00 0.00 4.46
4256 4622 1.663739 CGTCGACAAAGGAGGACCA 59.336 57.895 17.16 0.00 38.94 4.02
4257 4623 0.666577 CGTCGACAAAGGAGGACCAC 60.667 60.000 17.16 0.00 38.94 4.16
4271 4637 0.595567 GACCACGTGTCGCTGTTACA 60.596 55.000 15.65 0.00 33.49 2.41
4274 4645 0.111878 CACGTGTCGCTGTTACAACG 60.112 55.000 7.58 1.36 0.00 4.10
4305 4676 4.349791 GCGACAAATCAGCGCTTC 57.650 55.556 7.50 0.00 46.53 3.86
4306 4677 1.790387 GCGACAAATCAGCGCTTCT 59.210 52.632 7.50 0.00 46.53 2.85
4307 4678 0.519999 GCGACAAATCAGCGCTTCTG 60.520 55.000 7.50 5.11 46.53 3.02
4308 4679 0.792640 CGACAAATCAGCGCTTCTGT 59.207 50.000 7.50 8.81 43.32 3.41
4309 4680 1.195448 CGACAAATCAGCGCTTCTGTT 59.805 47.619 7.50 0.00 43.32 3.16
4310 4681 2.349817 CGACAAATCAGCGCTTCTGTTT 60.350 45.455 7.50 3.56 43.32 2.83
4311 4682 3.229552 GACAAATCAGCGCTTCTGTTTC 58.770 45.455 7.50 0.00 43.32 2.78
4312 4683 2.880890 ACAAATCAGCGCTTCTGTTTCT 59.119 40.909 7.50 0.00 43.32 2.52
4313 4684 3.231965 CAAATCAGCGCTTCTGTTTCTG 58.768 45.455 7.50 0.00 43.32 3.02
4314 4685 0.801251 ATCAGCGCTTCTGTTTCTGC 59.199 50.000 7.50 0.00 43.32 4.26
4315 4686 0.532640 TCAGCGCTTCTGTTTCTGCA 60.533 50.000 7.50 0.00 43.32 4.41
4316 4687 0.385223 CAGCGCTTCTGTTTCTGCAC 60.385 55.000 7.50 0.00 38.02 4.57
4317 4688 0.533755 AGCGCTTCTGTTTCTGCACT 60.534 50.000 2.64 0.00 0.00 4.40
4318 4689 0.308993 GCGCTTCTGTTTCTGCACTT 59.691 50.000 0.00 0.00 0.00 3.16
4319 4690 1.923316 GCGCTTCTGTTTCTGCACTTG 60.923 52.381 0.00 0.00 0.00 3.16
4320 4691 1.599071 CGCTTCTGTTTCTGCACTTGA 59.401 47.619 0.00 0.00 0.00 3.02
4321 4692 2.032054 CGCTTCTGTTTCTGCACTTGAA 59.968 45.455 0.00 0.00 0.00 2.69
4322 4693 3.487376 CGCTTCTGTTTCTGCACTTGAAA 60.487 43.478 0.00 0.00 0.00 2.69
4326 4697 2.844122 GTTTCTGCACTTGAAACGGT 57.156 45.000 12.57 0.00 42.16 4.83
4327 4698 2.450160 GTTTCTGCACTTGAAACGGTG 58.550 47.619 12.57 0.00 42.16 4.94
4330 4701 2.725815 GCACTTGAAACGGTGCGC 60.726 61.111 0.00 0.00 46.87 6.09
4331 4702 3.022287 CACTTGAAACGGTGCGCT 58.978 55.556 9.73 0.00 0.00 5.92
4332 4703 1.355210 CACTTGAAACGGTGCGCTT 59.645 52.632 9.73 0.00 0.00 4.68
4333 4704 0.248458 CACTTGAAACGGTGCGCTTT 60.248 50.000 9.73 0.00 0.00 3.51
4334 4705 0.248458 ACTTGAAACGGTGCGCTTTG 60.248 50.000 9.73 0.00 0.00 2.77
4335 4706 0.248458 CTTGAAACGGTGCGCTTTGT 60.248 50.000 9.73 0.24 0.00 2.83
4336 4707 1.003331 CTTGAAACGGTGCGCTTTGTA 60.003 47.619 9.73 0.00 0.00 2.41
4337 4708 0.584396 TGAAACGGTGCGCTTTGTAG 59.416 50.000 9.73 0.00 0.00 2.74
4338 4709 0.724785 GAAACGGTGCGCTTTGTAGC 60.725 55.000 9.73 0.00 44.21 3.58
4411 4786 2.965572 ATGTGTGTTTGCTGTTGCTT 57.034 40.000 0.00 0.00 40.48 3.91
4436 4811 1.062364 GGCATGATCCTGATGAGGGA 58.938 55.000 0.00 0.00 40.25 4.20
4458 4833 5.339695 GGAATTATACACCCTTGGTCTTGGA 60.340 44.000 0.00 0.00 31.02 3.53
4459 4834 4.563140 TTATACACCCTTGGTCTTGGAC 57.437 45.455 0.00 0.00 31.02 4.02
4464 4839 0.251341 CCCTTGGTCTTGGACTTGGG 60.251 60.000 0.00 0.00 33.35 4.12
4582 4959 0.038526 GGTGACTGTCTGTACGTGGG 60.039 60.000 9.51 0.00 0.00 4.61
4598 4981 2.152016 GTGGGCCTTGTGAGTACTTTC 58.848 52.381 4.53 0.00 0.00 2.62
4661 5054 2.121644 AAGGGGGTCCGGGTTCTT 60.122 61.111 0.00 0.00 38.33 2.52
4747 5150 1.202486 GCCATTGCATTGGATCCTGTG 60.202 52.381 27.72 12.48 39.25 3.66
4764 5167 1.277842 TGTGGAGTATCGTTGCCATGT 59.722 47.619 0.00 0.00 34.37 3.21
4765 5168 2.498078 TGTGGAGTATCGTTGCCATGTA 59.502 45.455 0.00 0.00 34.37 2.29
4766 5169 2.864343 GTGGAGTATCGTTGCCATGTAC 59.136 50.000 0.00 0.00 34.37 2.90
4810 5213 2.270205 CCAAGGCCATCAGACGCT 59.730 61.111 5.01 0.00 0.00 5.07
4811 5214 2.110967 CCAAGGCCATCAGACGCTG 61.111 63.158 5.01 1.02 0.00 5.18
4848 5251 4.028131 TCTCACGTTGATGGGGTAGTAAT 58.972 43.478 0.00 0.00 0.00 1.89
4850 5253 5.657745 TCTCACGTTGATGGGGTAGTAATAA 59.342 40.000 0.00 0.00 0.00 1.40
4851 5254 6.325545 TCTCACGTTGATGGGGTAGTAATAAT 59.674 38.462 0.00 0.00 0.00 1.28
4870 7760 7.792374 AATAATAGCATACAACTGTGTCTGG 57.208 36.000 0.00 0.00 39.30 3.86
4906 8102 1.665679 CATTCGTTCCCCAACTGATCG 59.334 52.381 0.00 0.00 0.00 3.69
5057 8259 1.703411 TGCCCAAGGACAAAAGGAAG 58.297 50.000 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 2.100197 TGCGCTACTCCATACTTGTCT 58.900 47.619 9.73 0.00 0.00 3.41
97 98 6.814146 GCTATTACTACATCCCAGTAGCATTC 59.186 42.308 0.00 0.00 44.14 2.67
105 106 5.163195 ACCTTTGGCTATTACTACATCCCAG 60.163 44.000 0.00 0.00 0.00 4.45
136 137 1.529244 GCCCTGGTGTTCTTGCAGT 60.529 57.895 0.00 0.00 0.00 4.40
158 159 9.998106 ATTGTGGCTTTAGAATTATCGTATAGT 57.002 29.630 0.00 0.00 0.00 2.12
194 195 6.690957 CGCATACCGATTTTACATGTGAAATT 59.309 34.615 24.42 14.34 40.02 1.82
195 196 6.037720 TCGCATACCGATTTTACATGTGAAAT 59.962 34.615 24.01 24.01 41.89 2.17
196 197 5.351740 TCGCATACCGATTTTACATGTGAAA 59.648 36.000 17.02 17.02 41.89 2.69
197 198 4.870991 TCGCATACCGATTTTACATGTGAA 59.129 37.500 9.11 3.21 41.89 3.18
282 283 3.825143 ATGTTTGCTGGATAATTGCCC 57.175 42.857 0.00 0.00 0.00 5.36
308 309 7.308169 CGATCTGATGCTAATAGAATTTTGCCA 60.308 37.037 0.00 0.00 0.00 4.92
313 314 7.148641 ACGTCGATCTGATGCTAATAGAATTT 58.851 34.615 0.00 0.00 37.08 1.82
322 324 2.292569 GGGTTACGTCGATCTGATGCTA 59.707 50.000 0.00 0.00 37.08 3.49
326 328 3.818180 AGTAGGGTTACGTCGATCTGAT 58.182 45.455 0.00 0.00 34.88 2.90
335 337 5.500234 TGTACTGTCATAGTAGGGTTACGT 58.500 41.667 0.00 0.00 42.37 3.57
341 343 7.868415 GCTCTTTTATGTACTGTCATAGTAGGG 59.132 40.741 0.00 0.00 42.37 3.53
342 344 8.414003 TGCTCTTTTATGTACTGTCATAGTAGG 58.586 37.037 0.00 0.00 42.37 3.18
343 345 9.239002 GTGCTCTTTTATGTACTGTCATAGTAG 57.761 37.037 0.00 0.00 42.37 2.57
344 346 8.745590 TGTGCTCTTTTATGTACTGTCATAGTA 58.254 33.333 0.00 0.00 40.89 1.82
345 347 7.611770 TGTGCTCTTTTATGTACTGTCATAGT 58.388 34.615 0.00 0.00 43.56 2.12
349 351 5.926542 GTCTGTGCTCTTTTATGTACTGTCA 59.073 40.000 0.00 0.00 0.00 3.58
350 352 5.348997 GGTCTGTGCTCTTTTATGTACTGTC 59.651 44.000 0.00 0.00 0.00 3.51
382 385 0.543749 CGCCATCTCCTCCTTTTCCT 59.456 55.000 0.00 0.00 0.00 3.36
384 387 0.464554 CCCGCCATCTCCTCCTTTTC 60.465 60.000 0.00 0.00 0.00 2.29
716 722 1.150567 CTTCTCCAGCCTTCATCGCG 61.151 60.000 0.00 0.00 0.00 5.87
790 797 1.798813 CAAACCTCGACTTGTGCTACC 59.201 52.381 0.00 0.00 0.00 3.18
791 798 1.194772 GCAAACCTCGACTTGTGCTAC 59.805 52.381 0.00 0.00 0.00 3.58
792 799 1.070134 AGCAAACCTCGACTTGTGCTA 59.930 47.619 4.63 0.00 40.40 3.49
793 800 0.179045 AGCAAACCTCGACTTGTGCT 60.179 50.000 0.98 0.98 37.50 4.40
794 801 0.663153 AAGCAAACCTCGACTTGTGC 59.337 50.000 0.00 0.00 0.00 4.57
796 803 0.663153 GCAAGCAAACCTCGACTTGT 59.337 50.000 11.44 0.00 41.22 3.16
797 804 0.947244 AGCAAGCAAACCTCGACTTG 59.053 50.000 6.79 6.79 41.89 3.16
798 805 2.543777 TAGCAAGCAAACCTCGACTT 57.456 45.000 0.00 0.00 0.00 3.01
799 806 2.350522 CATAGCAAGCAAACCTCGACT 58.649 47.619 0.00 0.00 0.00 4.18
800 807 1.398390 CCATAGCAAGCAAACCTCGAC 59.602 52.381 0.00 0.00 0.00 4.20
801 808 1.003118 ACCATAGCAAGCAAACCTCGA 59.997 47.619 0.00 0.00 0.00 4.04
802 809 1.453155 ACCATAGCAAGCAAACCTCG 58.547 50.000 0.00 0.00 0.00 4.63
803 810 3.873910 TCTACCATAGCAAGCAAACCTC 58.126 45.455 0.00 0.00 0.00 3.85
804 811 4.510167 ATCTACCATAGCAAGCAAACCT 57.490 40.909 0.00 0.00 0.00 3.50
805 812 4.260784 CGAATCTACCATAGCAAGCAAACC 60.261 45.833 0.00 0.00 0.00 3.27
806 813 4.786609 GCGAATCTACCATAGCAAGCAAAC 60.787 45.833 0.00 0.00 0.00 2.93
807 814 3.312421 GCGAATCTACCATAGCAAGCAAA 59.688 43.478 0.00 0.00 0.00 3.68
808 815 2.872245 GCGAATCTACCATAGCAAGCAA 59.128 45.455 0.00 0.00 0.00 3.91
811 818 5.446709 CATTTGCGAATCTACCATAGCAAG 58.553 41.667 0.00 0.00 43.90 4.01
823 830 2.368655 AAAGGGTGCATTTGCGAATC 57.631 45.000 0.00 0.00 45.83 2.52
827 834 3.376859 TCATAGTAAAGGGTGCATTTGCG 59.623 43.478 0.00 0.00 45.83 4.85
834 841 6.017026 GGAATAAGCTTCATAGTAAAGGGTGC 60.017 42.308 0.00 0.00 0.00 5.01
843 851 7.093858 GGGTATCTACGGAATAAGCTTCATAGT 60.094 40.741 0.00 0.83 0.00 2.12
858 866 2.083628 AGGACAAGGGGTATCTACGG 57.916 55.000 0.00 0.00 0.00 4.02
859 867 3.830121 ACTAGGACAAGGGGTATCTACG 58.170 50.000 0.00 0.00 0.00 3.51
863 871 4.202336 GGCTTTACTAGGACAAGGGGTATC 60.202 50.000 0.00 0.00 0.00 2.24
873 882 0.751452 CCCCGAGGCTTTACTAGGAC 59.249 60.000 0.00 0.00 35.51 3.85
874 883 0.632835 TCCCCGAGGCTTTACTAGGA 59.367 55.000 0.00 0.00 35.51 2.94
877 886 0.337428 AGGTCCCCGAGGCTTTACTA 59.663 55.000 0.00 0.00 0.00 1.82
900 909 1.594397 GCCAACTGCAGTTTTCTTTGC 59.406 47.619 29.23 19.04 40.77 3.68
902 911 1.202405 CCGCCAACTGCAGTTTTCTTT 60.202 47.619 29.23 4.82 41.33 2.52
912 921 1.677633 ACATAACCCCGCCAACTGC 60.678 57.895 0.00 0.00 0.00 4.40
914 923 1.677633 GCACATAACCCCGCCAACT 60.678 57.895 0.00 0.00 0.00 3.16
972 982 3.997064 CTCGCCCAAGAGCCGAGTG 62.997 68.421 0.00 0.00 42.41 3.51
989 999 1.194781 AGAGCCCATCGTTCACACCT 61.195 55.000 0.00 0.00 0.00 4.00
1077 1087 1.144093 CCAGTATCTCCCTCCTCGACT 59.856 57.143 0.00 0.00 0.00 4.18
1095 1105 2.735772 GCCCTCCATCTTCTCGCCA 61.736 63.158 0.00 0.00 0.00 5.69
1262 1272 0.531974 ACACAATGCCCGCGTATAGG 60.532 55.000 4.92 0.00 0.00 2.57
1442 1618 3.688694 TTACACAGCACCGGAATACTT 57.311 42.857 9.46 0.00 0.00 2.24
1451 1627 4.023193 GGTTATGGCATATTACACAGCACC 60.023 45.833 8.24 5.79 0.00 5.01
1492 1668 9.688592 CAGATAGAGAAAAAGAACAAAAATGCT 57.311 29.630 0.00 0.00 0.00 3.79
1688 1867 6.481976 TGGTATCGCTTACATGATACAAAAGG 59.518 38.462 0.00 0.00 45.57 3.11
1875 2062 4.464244 TGATAGATCCAAGATAAGCCGAGG 59.536 45.833 0.00 0.00 0.00 4.63
2033 2220 1.869132 TGTAATCGAGCAGCATCATGC 59.131 47.619 0.00 0.00 46.88 4.06
2085 2272 1.628340 TGACGAAATCCACCCATGAGT 59.372 47.619 0.00 0.00 0.00 3.41
2183 2370 5.107453 GGATATGACGTACATGCAGCTAAAC 60.107 44.000 9.77 0.00 39.77 2.01
2342 2569 9.629649 AAGGACCAATAATCCAATATAGGAGTA 57.370 33.333 0.00 0.00 41.85 2.59
2343 2570 8.386264 CAAGGACCAATAATCCAATATAGGAGT 58.614 37.037 0.00 0.00 41.90 3.85
2344 2571 8.386264 ACAAGGACCAATAATCCAATATAGGAG 58.614 37.037 0.00 0.00 41.90 3.69
2345 2572 8.287904 ACAAGGACCAATAATCCAATATAGGA 57.712 34.615 0.00 0.00 43.01 2.94
2346 2573 9.449719 GTACAAGGACCAATAATCCAATATAGG 57.550 37.037 0.00 0.00 38.86 2.57
2347 2574 9.151471 CGTACAAGGACCAATAATCCAATATAG 57.849 37.037 0.00 0.00 38.86 1.31
2532 2761 4.332828 GGCAAACCTACTAAACACATCCT 58.667 43.478 0.00 0.00 0.00 3.24
2535 2764 3.078837 CGGGCAAACCTACTAAACACAT 58.921 45.455 0.00 0.00 36.97 3.21
2536 2765 2.104451 TCGGGCAAACCTACTAAACACA 59.896 45.455 0.00 0.00 36.97 3.72
2537 2766 2.481568 GTCGGGCAAACCTACTAAACAC 59.518 50.000 0.00 0.00 36.97 3.32
2539 2768 2.079158 GGTCGGGCAAACCTACTAAAC 58.921 52.381 0.61 0.00 35.35 2.01
2540 2769 1.698532 TGGTCGGGCAAACCTACTAAA 59.301 47.619 8.72 0.00 37.69 1.85
2541 2770 1.350071 TGGTCGGGCAAACCTACTAA 58.650 50.000 8.72 0.00 37.69 2.24
2542 2771 1.350071 TTGGTCGGGCAAACCTACTA 58.650 50.000 8.72 0.00 37.69 1.82
2544 2773 1.320507 TTTTGGTCGGGCAAACCTAC 58.679 50.000 8.72 0.00 37.69 3.18
2582 2827 5.865552 CCATCTAGACTGCACCAAAATTTTG 59.134 40.000 21.65 21.65 37.90 2.44
2583 2828 5.539955 ACCATCTAGACTGCACCAAAATTTT 59.460 36.000 0.00 0.00 0.00 1.82
2597 2842 7.681939 TTTGACAATACCAAACCATCTAGAC 57.318 36.000 0.00 0.00 0.00 2.59
2672 2917 4.096984 GCTTGATTTATGGCTGCTTAGTGT 59.903 41.667 0.00 0.00 0.00 3.55
2700 2945 9.383519 CTCAATAAAGGACTAAATAGTTGCAGA 57.616 33.333 0.00 0.00 36.50 4.26
2754 3017 5.676811 AGGGGAGGGACTTGAATTTGTATAT 59.323 40.000 0.00 0.00 41.55 0.86
2787 3052 1.645919 ACCCCATAAGTTGGCCTTCAT 59.354 47.619 3.32 0.00 44.97 2.57
2843 3139 6.525628 CACAATGAAACATCACATCTAACAGC 59.474 38.462 0.00 0.00 0.00 4.40
2844 3140 7.587629 ACACAATGAAACATCACATCTAACAG 58.412 34.615 0.00 0.00 0.00 3.16
2845 3141 7.509141 ACACAATGAAACATCACATCTAACA 57.491 32.000 0.00 0.00 0.00 2.41
2846 3142 9.891828 TTAACACAATGAAACATCACATCTAAC 57.108 29.630 0.00 0.00 0.00 2.34
2849 3145 8.795513 TCATTAACACAATGAAACATCACATCT 58.204 29.630 0.00 0.00 34.07 2.90
2850 3146 8.969121 TCATTAACACAATGAAACATCACATC 57.031 30.769 0.00 0.00 34.07 3.06
2851 3147 9.932207 AATCATTAACACAATGAAACATCACAT 57.068 25.926 3.97 0.00 39.75 3.21
2852 3148 9.761504 AAATCATTAACACAATGAAACATCACA 57.238 25.926 3.97 0.00 39.75 3.58
2854 3150 9.978044 TGAAATCATTAACACAATGAAACATCA 57.022 25.926 3.97 4.36 39.75 3.07
2857 3153 9.761504 ACATGAAATCATTAACACAATGAAACA 57.238 25.926 0.00 5.55 39.75 2.83
2860 3156 9.978044 TGAACATGAAATCATTAACACAATGAA 57.022 25.926 0.00 0.00 39.75 2.57
2861 3157 9.978044 TTGAACATGAAATCATTAACACAATGA 57.022 25.926 0.00 2.42 40.50 2.57
2863 3159 9.985730 AGTTGAACATGAAATCATTAACACAAT 57.014 25.926 0.00 0.00 33.61 2.71
2864 3160 9.462174 GAGTTGAACATGAAATCATTAACACAA 57.538 29.630 0.00 0.00 33.61 3.33
2865 3161 8.849168 AGAGTTGAACATGAAATCATTAACACA 58.151 29.630 0.00 0.00 33.61 3.72
2866 3162 9.334693 GAGAGTTGAACATGAAATCATTAACAC 57.665 33.333 0.00 0.00 33.61 3.32
2867 3163 9.065798 TGAGAGTTGAACATGAAATCATTAACA 57.934 29.630 0.00 0.00 33.61 2.41
2868 3164 9.897744 TTGAGAGTTGAACATGAAATCATTAAC 57.102 29.630 0.00 0.00 33.61 2.01
2870 3166 9.288576 ACTTGAGAGTTGAACATGAAATCATTA 57.711 29.630 0.00 0.00 30.13 1.90
2871 3167 8.080417 CACTTGAGAGTTGAACATGAAATCATT 58.920 33.333 0.00 0.00 31.38 2.57
2872 3168 7.230108 ACACTTGAGAGTTGAACATGAAATCAT 59.770 33.333 0.00 0.00 33.10 2.45
2982 3283 2.088423 ACTCTCTGACGTAAGCAGGAG 58.912 52.381 14.26 14.26 45.62 3.69
2985 3286 5.493133 AATCTACTCTCTGACGTAAGCAG 57.507 43.478 0.00 0.00 45.62 4.24
3004 3305 8.762426 GTCGACCAAAATAATAGGACTGTAATC 58.238 37.037 3.51 0.00 0.00 1.75
3023 3324 2.455674 CTTGTGGATCAAGTCGACCA 57.544 50.000 13.01 0.00 45.89 4.02
3149 3450 6.496565 AGGATCCACATAATCTCTCAAGTAGG 59.503 42.308 15.82 0.00 0.00 3.18
3175 3476 4.807304 CCCATGCAGCATCAATTTAAGAAC 59.193 41.667 4.38 0.00 0.00 3.01
3186 3487 2.954318 AGTTCATAACCCATGCAGCATC 59.046 45.455 4.38 0.00 34.35 3.91
3187 3488 3.022557 AGTTCATAACCCATGCAGCAT 57.977 42.857 0.52 0.52 34.35 3.79
3218 3519 0.677842 CCTAATAACCCGGACGGAGG 59.322 60.000 13.13 5.93 37.50 4.30
3220 3521 1.402107 GGCCTAATAACCCGGACGGA 61.402 60.000 13.13 0.00 37.50 4.69
3221 3522 1.070275 GGCCTAATAACCCGGACGG 59.930 63.158 0.73 3.25 37.81 4.79
3222 3523 0.033090 GAGGCCTAATAACCCGGACG 59.967 60.000 4.42 0.00 0.00 4.79
3223 3524 1.421480 AGAGGCCTAATAACCCGGAC 58.579 55.000 4.42 0.00 0.00 4.79
3224 3525 2.185663 AAGAGGCCTAATAACCCGGA 57.814 50.000 4.42 0.00 0.00 5.14
3225 3526 2.289506 GCTAAGAGGCCTAATAACCCGG 60.290 54.545 4.42 0.00 0.00 5.73
3226 3527 2.367567 TGCTAAGAGGCCTAATAACCCG 59.632 50.000 4.42 0.00 0.00 5.28
3227 3528 4.041691 TGATGCTAAGAGGCCTAATAACCC 59.958 45.833 4.42 0.00 0.00 4.11
3228 3529 4.998033 GTGATGCTAAGAGGCCTAATAACC 59.002 45.833 4.42 0.00 0.00 2.85
3229 3530 5.611374 TGTGATGCTAAGAGGCCTAATAAC 58.389 41.667 4.42 0.00 0.00 1.89
3230 3531 5.887214 TGTGATGCTAAGAGGCCTAATAA 57.113 39.130 4.42 0.00 0.00 1.40
3231 3532 5.743130 GCTTGTGATGCTAAGAGGCCTAATA 60.743 44.000 4.42 0.09 0.00 0.98
3232 3533 4.712476 CTTGTGATGCTAAGAGGCCTAAT 58.288 43.478 4.42 0.00 0.00 1.73
3233 3534 3.682718 GCTTGTGATGCTAAGAGGCCTAA 60.683 47.826 4.42 0.00 0.00 2.69
3234 3535 2.158900 GCTTGTGATGCTAAGAGGCCTA 60.159 50.000 4.42 0.00 0.00 3.93
3235 3536 1.407989 GCTTGTGATGCTAAGAGGCCT 60.408 52.381 3.86 3.86 0.00 5.19
3236 3537 1.020437 GCTTGTGATGCTAAGAGGCC 58.980 55.000 0.00 0.00 0.00 5.19
3237 3538 1.742761 TGCTTGTGATGCTAAGAGGC 58.257 50.000 0.00 0.00 0.00 4.70
3238 3539 3.276857 ACATGCTTGTGATGCTAAGAGG 58.723 45.455 4.14 0.00 33.85 3.69
3239 3540 3.311871 GGACATGCTTGTGATGCTAAGAG 59.688 47.826 10.37 0.00 35.79 2.85
3240 3541 3.273434 GGACATGCTTGTGATGCTAAGA 58.727 45.455 10.37 0.00 35.79 2.10
3241 3542 2.357009 GGGACATGCTTGTGATGCTAAG 59.643 50.000 10.37 0.00 35.79 2.18
3242 3543 2.025981 AGGGACATGCTTGTGATGCTAA 60.026 45.455 10.37 0.00 35.79 3.09
3243 3544 1.561076 AGGGACATGCTTGTGATGCTA 59.439 47.619 10.37 0.00 35.79 3.49
3244 3545 0.330604 AGGGACATGCTTGTGATGCT 59.669 50.000 10.37 0.00 35.79 3.79
3245 3546 1.180029 AAGGGACATGCTTGTGATGC 58.820 50.000 10.37 0.00 35.79 3.91
3246 3547 3.947910 AAAAGGGACATGCTTGTGATG 57.052 42.857 10.37 0.00 35.79 3.07
3247 3548 7.147846 CCTTATAAAAAGGGACATGCTTGTGAT 60.148 37.037 10.37 0.00 35.79 3.06
3248 3549 6.152661 CCTTATAAAAAGGGACATGCTTGTGA 59.847 38.462 10.37 0.00 35.79 3.58
3249 3550 6.332630 CCTTATAAAAAGGGACATGCTTGTG 58.667 40.000 10.37 0.00 35.79 3.33
3250 3551 5.105351 GCCTTATAAAAAGGGACATGCTTGT 60.105 40.000 4.68 4.68 37.88 3.16
3251 3552 5.351458 GCCTTATAAAAAGGGACATGCTTG 58.649 41.667 5.96 0.00 37.88 4.01
3252 3553 4.405680 GGCCTTATAAAAAGGGACATGCTT 59.594 41.667 0.00 0.00 37.88 3.91
3253 3554 3.960755 GGCCTTATAAAAAGGGACATGCT 59.039 43.478 0.00 0.00 37.88 3.79
3254 3555 3.960755 AGGCCTTATAAAAAGGGACATGC 59.039 43.478 0.00 0.00 37.88 4.06
3255 3556 4.275936 CGAGGCCTTATAAAAAGGGACATG 59.724 45.833 6.77 0.00 37.88 3.21
3256 3557 4.461198 CGAGGCCTTATAAAAAGGGACAT 58.539 43.478 6.77 0.00 37.88 3.06
3257 3558 3.881220 CGAGGCCTTATAAAAAGGGACA 58.119 45.455 6.77 0.00 37.88 4.02
3258 3559 2.617308 GCGAGGCCTTATAAAAAGGGAC 59.383 50.000 6.77 0.00 37.88 4.46
3259 3560 2.508300 AGCGAGGCCTTATAAAAAGGGA 59.492 45.455 6.77 0.00 37.88 4.20
3260 3561 2.932261 AGCGAGGCCTTATAAAAAGGG 58.068 47.619 6.77 0.00 37.88 3.95
3261 3562 4.440112 CCAAAGCGAGGCCTTATAAAAAGG 60.440 45.833 6.77 0.00 40.39 3.11
3262 3563 4.398044 TCCAAAGCGAGGCCTTATAAAAAG 59.602 41.667 6.77 0.00 0.00 2.27
3263 3564 4.337145 TCCAAAGCGAGGCCTTATAAAAA 58.663 39.130 6.77 0.00 0.00 1.94
3264 3565 3.958018 TCCAAAGCGAGGCCTTATAAAA 58.042 40.909 6.77 0.00 0.00 1.52
3265 3566 3.637911 TCCAAAGCGAGGCCTTATAAA 57.362 42.857 6.77 0.00 0.00 1.40
3266 3567 3.637911 TTCCAAAGCGAGGCCTTATAA 57.362 42.857 6.77 0.00 0.00 0.98
3267 3568 3.541632 CTTTCCAAAGCGAGGCCTTATA 58.458 45.455 6.77 0.00 0.00 0.98
3268 3569 2.369394 CTTTCCAAAGCGAGGCCTTAT 58.631 47.619 6.77 0.00 0.00 1.73
3269 3570 1.613255 CCTTTCCAAAGCGAGGCCTTA 60.613 52.381 6.77 0.00 34.69 2.69
3270 3571 0.895559 CCTTTCCAAAGCGAGGCCTT 60.896 55.000 6.77 0.00 34.69 4.35
3271 3572 1.303643 CCTTTCCAAAGCGAGGCCT 60.304 57.895 3.86 3.86 34.69 5.19
3272 3573 1.603739 ACCTTTCCAAAGCGAGGCC 60.604 57.895 0.00 0.00 34.69 5.19
3273 3574 1.581447 CACCTTTCCAAAGCGAGGC 59.419 57.895 0.00 0.00 34.69 4.70
3274 3575 1.172180 TGCACCTTTCCAAAGCGAGG 61.172 55.000 0.00 0.00 34.69 4.63
3275 3576 0.883833 ATGCACCTTTCCAAAGCGAG 59.116 50.000 0.00 0.00 34.69 5.03
3276 3577 0.597568 CATGCACCTTTCCAAAGCGA 59.402 50.000 0.00 0.00 34.69 4.93
3277 3578 1.010419 GCATGCACCTTTCCAAAGCG 61.010 55.000 14.21 0.00 34.69 4.68
3278 3579 0.033781 TGCATGCACCTTTCCAAAGC 59.966 50.000 18.46 0.00 34.69 3.51
3279 3580 2.343101 CATGCATGCACCTTTCCAAAG 58.657 47.619 25.37 0.00 35.79 2.77
3280 3581 2.459060 CATGCATGCACCTTTCCAAA 57.541 45.000 25.37 0.00 0.00 3.28
3291 3592 6.495892 CCAATGAAATGGTTGCATGCATGC 62.496 45.833 38.71 38.71 43.53 4.06
3292 3593 3.064682 CCAATGAAATGGTTGCATGCATG 59.935 43.478 23.37 22.70 35.65 4.06
3293 3594 3.275143 CCAATGAAATGGTTGCATGCAT 58.725 40.909 23.37 4.78 35.65 3.96
3294 3595 2.701107 CCAATGAAATGGTTGCATGCA 58.299 42.857 18.46 18.46 35.65 3.96
3303 3604 5.470777 ACTTTCAATGCAACCAATGAAATGG 59.529 36.000 12.32 0.00 45.06 3.16
3304 3605 6.203145 TGACTTTCAATGCAACCAATGAAATG 59.797 34.615 12.32 10.12 45.06 2.32
3305 3606 6.289834 TGACTTTCAATGCAACCAATGAAAT 58.710 32.000 12.32 6.35 45.06 2.17
3306 3607 5.668471 TGACTTTCAATGCAACCAATGAAA 58.332 33.333 0.00 2.84 44.40 2.69
3307 3608 5.273674 TGACTTTCAATGCAACCAATGAA 57.726 34.783 0.00 0.00 38.68 2.57
3308 3609 4.933505 TGACTTTCAATGCAACCAATGA 57.066 36.364 0.00 0.00 0.00 2.57
3309 3610 5.467399 ACAATGACTTTCAATGCAACCAATG 59.533 36.000 0.00 0.00 30.64 2.82
3310 3611 5.613329 ACAATGACTTTCAATGCAACCAAT 58.387 33.333 0.00 0.00 30.64 3.16
3311 3612 5.021033 ACAATGACTTTCAATGCAACCAA 57.979 34.783 0.00 0.00 30.64 3.67
3312 3613 4.669206 ACAATGACTTTCAATGCAACCA 57.331 36.364 0.00 0.00 30.64 3.67
3313 3614 4.810491 ACAACAATGACTTTCAATGCAACC 59.190 37.500 0.00 0.00 30.64 3.77
3314 3615 5.971895 ACAACAATGACTTTCAATGCAAC 57.028 34.783 0.00 0.00 30.64 4.17
3315 3616 5.293814 CCAACAACAATGACTTTCAATGCAA 59.706 36.000 0.00 0.00 30.64 4.08
3316 3617 4.809958 CCAACAACAATGACTTTCAATGCA 59.190 37.500 0.00 0.00 30.64 3.96
3317 3618 4.810491 ACCAACAACAATGACTTTCAATGC 59.190 37.500 0.00 0.00 30.64 3.56
3318 3619 5.811613 ACACCAACAACAATGACTTTCAATG 59.188 36.000 0.00 0.00 33.66 2.82
3319 3620 5.976458 ACACCAACAACAATGACTTTCAAT 58.024 33.333 0.00 0.00 0.00 2.57
3320 3621 5.047731 TGACACCAACAACAATGACTTTCAA 60.048 36.000 0.00 0.00 0.00 2.69
3321 3622 4.460731 TGACACCAACAACAATGACTTTCA 59.539 37.500 0.00 0.00 0.00 2.69
3322 3623 4.992688 TGACACCAACAACAATGACTTTC 58.007 39.130 0.00 0.00 0.00 2.62
3323 3624 5.350633 CATGACACCAACAACAATGACTTT 58.649 37.500 0.00 0.00 0.00 2.66
3324 3625 4.202141 CCATGACACCAACAACAATGACTT 60.202 41.667 0.00 0.00 0.00 3.01
3325 3626 3.318839 CCATGACACCAACAACAATGACT 59.681 43.478 0.00 0.00 0.00 3.41
3326 3627 3.641648 CCATGACACCAACAACAATGAC 58.358 45.455 0.00 0.00 0.00 3.06
3327 3628 2.035704 GCCATGACACCAACAACAATGA 59.964 45.455 0.00 0.00 0.00 2.57
3328 3629 2.036217 AGCCATGACACCAACAACAATG 59.964 45.455 0.00 0.00 0.00 2.82
3329 3630 2.036217 CAGCCATGACACCAACAACAAT 59.964 45.455 0.00 0.00 0.00 2.71
3330 3631 1.408340 CAGCCATGACACCAACAACAA 59.592 47.619 0.00 0.00 0.00 2.83
3331 3632 1.031235 CAGCCATGACACCAACAACA 58.969 50.000 0.00 0.00 0.00 3.33
3332 3633 1.317613 TCAGCCATGACACCAACAAC 58.682 50.000 0.00 0.00 0.00 3.32
3333 3634 2.064434 TTCAGCCATGACACCAACAA 57.936 45.000 0.00 0.00 34.35 2.83
3334 3635 2.064434 TTTCAGCCATGACACCAACA 57.936 45.000 0.00 0.00 34.35 3.33
3335 3636 3.451141 TTTTTCAGCCATGACACCAAC 57.549 42.857 0.00 0.00 34.35 3.77
3336 3637 4.686191 AATTTTTCAGCCATGACACCAA 57.314 36.364 0.00 0.00 34.35 3.67
3337 3638 5.798125 TTAATTTTTCAGCCATGACACCA 57.202 34.783 0.00 0.00 34.35 4.17
3338 3639 7.275560 GTGTATTAATTTTTCAGCCATGACACC 59.724 37.037 0.00 0.00 34.35 4.16
3339 3640 8.028938 AGTGTATTAATTTTTCAGCCATGACAC 58.971 33.333 0.00 0.00 34.35 3.67
3340 3641 8.121305 AGTGTATTAATTTTTCAGCCATGACA 57.879 30.769 0.00 0.00 34.35 3.58
3341 3642 8.986477 AAGTGTATTAATTTTTCAGCCATGAC 57.014 30.769 0.00 0.00 34.35 3.06
3342 3643 8.801299 TGAAGTGTATTAATTTTTCAGCCATGA 58.199 29.630 0.00 0.00 0.00 3.07
3343 3644 8.984891 TGAAGTGTATTAATTTTTCAGCCATG 57.015 30.769 0.00 0.00 0.00 3.66
3344 3645 9.590451 CATGAAGTGTATTAATTTTTCAGCCAT 57.410 29.630 0.00 0.00 0.00 4.40
3345 3646 8.584157 ACATGAAGTGTATTAATTTTTCAGCCA 58.416 29.630 0.00 0.00 39.91 4.75
3346 3647 8.863049 CACATGAAGTGTATTAATTTTTCAGCC 58.137 33.333 0.00 0.00 43.40 4.85
3363 3664 5.051816 CCAATGAAAAAGCACACATGAAGT 58.948 37.500 0.00 0.00 0.00 3.01
3364 3665 5.051816 ACCAATGAAAAAGCACACATGAAG 58.948 37.500 0.00 0.00 0.00 3.02
3365 3666 5.021033 ACCAATGAAAAAGCACACATGAA 57.979 34.783 0.00 0.00 0.00 2.57
3366 3667 4.669206 ACCAATGAAAAAGCACACATGA 57.331 36.364 0.00 0.00 0.00 3.07
3367 3668 4.553156 GCAACCAATGAAAAAGCACACATG 60.553 41.667 0.00 0.00 0.00 3.21
3368 3669 3.560896 GCAACCAATGAAAAAGCACACAT 59.439 39.130 0.00 0.00 0.00 3.21
3369 3670 2.935201 GCAACCAATGAAAAAGCACACA 59.065 40.909 0.00 0.00 0.00 3.72
3370 3671 2.935201 TGCAACCAATGAAAAAGCACAC 59.065 40.909 0.00 0.00 0.00 3.82
3371 3672 3.257469 TGCAACCAATGAAAAAGCACA 57.743 38.095 0.00 0.00 0.00 4.57
3372 3673 3.607542 GCATGCAACCAATGAAAAAGCAC 60.608 43.478 14.21 0.00 32.92 4.40
3373 3674 2.548904 GCATGCAACCAATGAAAAAGCA 59.451 40.909 14.21 0.00 34.78 3.91
3374 3675 2.548904 TGCATGCAACCAATGAAAAAGC 59.451 40.909 20.30 0.00 0.00 3.51
3375 3676 4.214545 ACATGCATGCAACCAATGAAAAAG 59.785 37.500 26.68 4.04 0.00 2.27
3376 3677 4.023963 CACATGCATGCAACCAATGAAAAA 60.024 37.500 26.68 0.00 0.00 1.94
3377 3678 3.498777 CACATGCATGCAACCAATGAAAA 59.501 39.130 26.68 0.00 0.00 2.29
3378 3679 3.067833 CACATGCATGCAACCAATGAAA 58.932 40.909 26.68 0.00 0.00 2.69
3379 3680 2.299297 TCACATGCATGCAACCAATGAA 59.701 40.909 26.68 8.95 0.00 2.57
3380 3681 1.893801 TCACATGCATGCAACCAATGA 59.106 42.857 26.68 19.30 0.00 2.57
3381 3682 2.094442 TCTCACATGCATGCAACCAATG 60.094 45.455 26.68 20.00 0.00 2.82
3382 3683 2.165641 CTCTCACATGCATGCAACCAAT 59.834 45.455 26.68 4.34 0.00 3.16
3383 3684 1.542472 CTCTCACATGCATGCAACCAA 59.458 47.619 26.68 10.11 0.00 3.67
3384 3685 1.170442 CTCTCACATGCATGCAACCA 58.830 50.000 26.68 8.12 0.00 3.67
3385 3686 1.400846 CTCTCTCACATGCATGCAACC 59.599 52.381 26.68 0.00 0.00 3.77
3386 3687 2.082231 ACTCTCTCACATGCATGCAAC 58.918 47.619 26.68 0.00 0.00 4.17
3387 3688 2.081462 CACTCTCTCACATGCATGCAA 58.919 47.619 26.68 13.54 0.00 4.08
3388 3689 1.734163 CACTCTCTCACATGCATGCA 58.266 50.000 26.53 25.04 0.00 3.96
3389 3690 0.377554 GCACTCTCTCACATGCATGC 59.622 55.000 26.53 11.82 38.00 4.06
3390 3691 1.734163 TGCACTCTCTCACATGCATG 58.266 50.000 25.09 25.09 42.92 4.06
3393 3694 1.400846 CCAATGCACTCTCTCACATGC 59.599 52.381 0.00 0.00 38.59 4.06
3394 3695 2.014857 CCCAATGCACTCTCTCACATG 58.985 52.381 0.00 0.00 0.00 3.21
3395 3696 1.911357 TCCCAATGCACTCTCTCACAT 59.089 47.619 0.00 0.00 0.00 3.21
3396 3697 1.277273 CTCCCAATGCACTCTCTCACA 59.723 52.381 0.00 0.00 0.00 3.58
3397 3698 1.277557 ACTCCCAATGCACTCTCTCAC 59.722 52.381 0.00 0.00 0.00 3.51
3398 3699 1.277273 CACTCCCAATGCACTCTCTCA 59.723 52.381 0.00 0.00 0.00 3.27
3399 3700 1.406614 CCACTCCCAATGCACTCTCTC 60.407 57.143 0.00 0.00 0.00 3.20
3400 3701 0.617413 CCACTCCCAATGCACTCTCT 59.383 55.000 0.00 0.00 0.00 3.10
3401 3702 0.615331 TCCACTCCCAATGCACTCTC 59.385 55.000 0.00 0.00 0.00 3.20
3402 3703 1.067295 TTCCACTCCCAATGCACTCT 58.933 50.000 0.00 0.00 0.00 3.24
3403 3704 1.747355 CATTCCACTCCCAATGCACTC 59.253 52.381 0.00 0.00 0.00 3.51
3404 3705 1.617804 CCATTCCACTCCCAATGCACT 60.618 52.381 0.00 0.00 0.00 4.40
3405 3706 0.819582 CCATTCCACTCCCAATGCAC 59.180 55.000 0.00 0.00 0.00 4.57
3406 3707 0.703488 TCCATTCCACTCCCAATGCA 59.297 50.000 0.00 0.00 0.00 3.96
3407 3708 1.753073 CTTCCATTCCACTCCCAATGC 59.247 52.381 0.00 0.00 0.00 3.56
3408 3709 3.370840 TCTTCCATTCCACTCCCAATG 57.629 47.619 0.00 0.00 0.00 2.82
3409 3710 4.614967 ATTCTTCCATTCCACTCCCAAT 57.385 40.909 0.00 0.00 0.00 3.16
3410 3711 4.402616 AATTCTTCCATTCCACTCCCAA 57.597 40.909 0.00 0.00 0.00 4.12
3411 3712 5.528600 TTAATTCTTCCATTCCACTCCCA 57.471 39.130 0.00 0.00 0.00 4.37
3412 3713 5.893824 ACATTAATTCTTCCATTCCACTCCC 59.106 40.000 0.00 0.00 0.00 4.30
3413 3714 6.603201 TCACATTAATTCTTCCATTCCACTCC 59.397 38.462 0.00 0.00 0.00 3.85
3414 3715 7.630242 TCACATTAATTCTTCCATTCCACTC 57.370 36.000 0.00 0.00 0.00 3.51
3415 3716 6.096001 GCTCACATTAATTCTTCCATTCCACT 59.904 38.462 0.00 0.00 0.00 4.00
3416 3717 6.127647 TGCTCACATTAATTCTTCCATTCCAC 60.128 38.462 0.00 0.00 0.00 4.02
3417 3718 5.951148 TGCTCACATTAATTCTTCCATTCCA 59.049 36.000 0.00 0.00 0.00 3.53
3418 3719 6.455360 TGCTCACATTAATTCTTCCATTCC 57.545 37.500 0.00 0.00 0.00 3.01
3419 3720 8.937634 ATTTGCTCACATTAATTCTTCCATTC 57.062 30.769 0.00 0.00 0.00 2.67
3421 3722 9.807649 GTAATTTGCTCACATTAATTCTTCCAT 57.192 29.630 0.00 0.00 0.00 3.41
3422 3723 9.023962 AGTAATTTGCTCACATTAATTCTTCCA 57.976 29.630 0.00 0.00 0.00 3.53
3433 3734 9.060347 CCAAGACATATAGTAATTTGCTCACAT 57.940 33.333 0.00 0.00 0.00 3.21
3434 3735 8.046708 ACCAAGACATATAGTAATTTGCTCACA 58.953 33.333 0.00 0.00 0.00 3.58
3435 3736 8.438676 ACCAAGACATATAGTAATTTGCTCAC 57.561 34.615 0.00 0.00 0.00 3.51
3450 3751 9.256228 AGACAACTTCTCTTATACCAAGACATA 57.744 33.333 0.00 0.00 0.00 2.29
3451 3752 8.140112 AGACAACTTCTCTTATACCAAGACAT 57.860 34.615 0.00 0.00 0.00 3.06
3452 3753 7.540474 AGACAACTTCTCTTATACCAAGACA 57.460 36.000 0.00 0.00 0.00 3.41
3453 3754 8.834749 AAAGACAACTTCTCTTATACCAAGAC 57.165 34.615 0.00 0.00 35.05 3.01
3455 3756 9.372369 CCTAAAGACAACTTCTCTTATACCAAG 57.628 37.037 0.00 0.00 35.05 3.61
3456 3757 7.822822 GCCTAAAGACAACTTCTCTTATACCAA 59.177 37.037 0.00 0.00 35.05 3.67
3457 3758 7.328737 GCCTAAAGACAACTTCTCTTATACCA 58.671 38.462 0.00 0.00 35.05 3.25
3458 3759 6.762187 GGCCTAAAGACAACTTCTCTTATACC 59.238 42.308 0.00 0.00 35.05 2.73
3459 3760 7.557724 AGGCCTAAAGACAACTTCTCTTATAC 58.442 38.462 1.29 0.00 35.05 1.47
3460 3761 7.735326 AGGCCTAAAGACAACTTCTCTTATA 57.265 36.000 1.29 0.00 35.05 0.98
3461 3762 6.628644 AGGCCTAAAGACAACTTCTCTTAT 57.371 37.500 1.29 0.00 35.05 1.73
3462 3763 7.549147 TTAGGCCTAAAGACAACTTCTCTTA 57.451 36.000 23.21 0.00 35.05 2.10
3463 3764 4.984146 AGGCCTAAAGACAACTTCTCTT 57.016 40.909 1.29 0.00 35.05 2.85
3464 3765 6.628644 ATTAGGCCTAAAGACAACTTCTCT 57.371 37.500 28.50 4.96 35.05 3.10
3465 3766 8.666573 GTTTATTAGGCCTAAAGACAACTTCTC 58.333 37.037 28.50 6.62 35.05 2.87
3466 3767 7.610692 GGTTTATTAGGCCTAAAGACAACTTCT 59.389 37.037 28.50 10.86 35.05 2.85
3467 3768 7.148120 GGGTTTATTAGGCCTAAAGACAACTTC 60.148 40.741 28.50 17.62 35.05 3.01
3468 3769 6.662234 GGGTTTATTAGGCCTAAAGACAACTT 59.338 38.462 28.50 12.30 38.05 2.66
3469 3770 6.185511 GGGTTTATTAGGCCTAAAGACAACT 58.814 40.000 28.50 13.03 0.00 3.16
3470 3771 5.065602 CGGGTTTATTAGGCCTAAAGACAAC 59.934 44.000 28.50 23.66 0.00 3.32
3471 3772 5.187687 CGGGTTTATTAGGCCTAAAGACAA 58.812 41.667 28.50 16.49 0.00 3.18
3472 3773 4.384427 CCGGGTTTATTAGGCCTAAAGACA 60.384 45.833 28.50 10.52 0.00 3.41
3473 3774 4.132336 CCGGGTTTATTAGGCCTAAAGAC 58.868 47.826 28.50 23.35 0.00 3.01
3474 3775 4.039339 TCCGGGTTTATTAGGCCTAAAGA 58.961 43.478 28.50 16.79 0.00 2.52
3475 3776 4.132336 GTCCGGGTTTATTAGGCCTAAAG 58.868 47.826 28.50 13.19 0.00 1.85
3476 3777 3.432046 CGTCCGGGTTTATTAGGCCTAAA 60.432 47.826 28.50 12.25 0.00 1.85
3477 3778 2.102925 CGTCCGGGTTTATTAGGCCTAA 59.897 50.000 27.11 27.11 0.00 2.69
3478 3779 1.688197 CGTCCGGGTTTATTAGGCCTA 59.312 52.381 8.91 8.91 0.00 3.93
3479 3780 0.466963 CGTCCGGGTTTATTAGGCCT 59.533 55.000 11.78 11.78 0.00 5.19
3480 3781 0.533531 CCGTCCGGGTTTATTAGGCC 60.534 60.000 0.00 0.00 0.00 5.19
3481 3782 0.465287 TCCGTCCGGGTTTATTAGGC 59.535 55.000 0.00 0.00 37.00 3.93
3482 3783 1.069668 CCTCCGTCCGGGTTTATTAGG 59.930 57.143 0.00 0.00 37.00 2.69
3483 3784 1.069668 CCCTCCGTCCGGGTTTATTAG 59.930 57.143 0.00 0.00 36.91 1.73
3484 3785 1.122227 CCCTCCGTCCGGGTTTATTA 58.878 55.000 0.00 0.00 36.91 0.98
3485 3786 0.618393 TCCCTCCGTCCGGGTTTATT 60.618 55.000 0.00 0.00 42.56 1.40
3486 3787 1.002017 TCCCTCCGTCCGGGTTTAT 59.998 57.895 0.00 0.00 42.56 1.40
3487 3788 1.683365 CTCCCTCCGTCCGGGTTTA 60.683 63.158 0.00 0.00 42.56 2.01
3488 3789 2.445492 TACTCCCTCCGTCCGGGTTT 62.445 60.000 0.00 0.00 42.56 3.27
3489 3790 2.922704 TACTCCCTCCGTCCGGGTT 61.923 63.158 0.00 0.00 42.56 4.11
3490 3791 3.341629 TACTCCCTCCGTCCGGGT 61.342 66.667 0.00 0.00 42.56 5.28
3491 3792 2.832201 GTACTCCCTCCGTCCGGG 60.832 72.222 0.00 0.00 43.38 5.73
3492 3793 2.593468 TACGTACTCCCTCCGTCCGG 62.593 65.000 0.00 0.00 36.12 5.14
3493 3794 0.744414 TTACGTACTCCCTCCGTCCG 60.744 60.000 0.00 0.00 36.12 4.79
3494 3795 0.735471 GTTACGTACTCCCTCCGTCC 59.265 60.000 0.00 0.00 36.12 4.79
3495 3796 1.131315 GTGTTACGTACTCCCTCCGTC 59.869 57.143 0.00 0.00 36.12 4.79
3496 3797 1.168714 GTGTTACGTACTCCCTCCGT 58.831 55.000 0.00 0.00 38.53 4.69
3497 3798 1.167851 TGTGTTACGTACTCCCTCCG 58.832 55.000 0.00 0.00 0.00 4.63
3498 3799 4.261909 CCATATGTGTTACGTACTCCCTCC 60.262 50.000 1.24 0.00 0.00 4.30
3499 3800 4.340381 ACCATATGTGTTACGTACTCCCTC 59.660 45.833 1.24 0.00 0.00 4.30
3500 3801 4.284178 ACCATATGTGTTACGTACTCCCT 58.716 43.478 1.24 0.00 0.00 4.20
3501 3802 4.660789 ACCATATGTGTTACGTACTCCC 57.339 45.455 1.24 0.00 0.00 4.30
3502 3803 4.807304 CCAACCATATGTGTTACGTACTCC 59.193 45.833 1.24 0.00 0.00 3.85
3503 3804 5.653507 TCCAACCATATGTGTTACGTACTC 58.346 41.667 1.24 0.00 0.00 2.59
3504 3805 5.664294 TCCAACCATATGTGTTACGTACT 57.336 39.130 1.24 0.00 0.00 2.73
3505 3806 6.913873 ATTCCAACCATATGTGTTACGTAC 57.086 37.500 1.24 0.00 0.00 3.67
3506 3807 7.606839 TCAAATTCCAACCATATGTGTTACGTA 59.393 33.333 1.24 0.00 0.00 3.57
3507 3808 6.431543 TCAAATTCCAACCATATGTGTTACGT 59.568 34.615 1.24 0.00 0.00 3.57
3508 3809 6.847400 TCAAATTCCAACCATATGTGTTACG 58.153 36.000 1.24 0.84 0.00 3.18
3509 3810 9.301153 GAATCAAATTCCAACCATATGTGTTAC 57.699 33.333 1.24 0.00 33.17 2.50
3537 3838 9.066892 AGCAAGACAGTAAATTCTAAACAATCA 57.933 29.630 0.00 0.00 0.00 2.57
3558 3859 8.025445 AGTGCAAGTAATCTTTTATCAAGCAAG 58.975 33.333 0.00 0.00 0.00 4.01
3580 3881 4.184629 CACTATCCTTCACCAACTAGTGC 58.815 47.826 0.00 0.00 37.68 4.40
3605 3906 2.419297 GGGAGTACTTCACAGCATCAGG 60.419 54.545 2.92 0.00 0.00 3.86
3622 3923 1.638529 ACTTCACAGTCCAGAGGGAG 58.361 55.000 0.00 0.00 46.12 4.30
3623 3924 2.110188 ACTACTTCACAGTCCAGAGGGA 59.890 50.000 0.00 0.00 42.29 4.20
3624 3925 2.232452 CACTACTTCACAGTCCAGAGGG 59.768 54.545 0.00 0.00 34.06 4.30
3625 3926 3.157881 TCACTACTTCACAGTCCAGAGG 58.842 50.000 0.00 0.00 34.06 3.69
3626 3927 4.704540 AGATCACTACTTCACAGTCCAGAG 59.295 45.833 0.00 0.00 34.06 3.35
3627 3928 4.667573 AGATCACTACTTCACAGTCCAGA 58.332 43.478 0.00 0.00 34.06 3.86
3628 3929 6.516739 TTAGATCACTACTTCACAGTCCAG 57.483 41.667 0.00 0.00 34.06 3.86
3629 3930 6.911250 TTTAGATCACTACTTCACAGTCCA 57.089 37.500 0.00 0.00 34.06 4.02
3630 3931 7.873505 ACTTTTTAGATCACTACTTCACAGTCC 59.126 37.037 0.00 0.00 34.06 3.85
3631 3932 8.819643 ACTTTTTAGATCACTACTTCACAGTC 57.180 34.615 0.00 0.00 34.06 3.51
3632 3933 8.643324 AGACTTTTTAGATCACTACTTCACAGT 58.357 33.333 0.00 0.00 36.99 3.55
3633 3934 9.482627 AAGACTTTTTAGATCACTACTTCACAG 57.517 33.333 0.00 0.00 0.00 3.66
3670 3971 9.972106 ACTAACTAATACTAGTACAACCTCTGT 57.028 33.333 4.31 0.00 37.39 3.41
3672 3973 9.972106 ACACTAACTAATACTAGTACAACCTCT 57.028 33.333 4.31 0.00 37.39 3.69
3695 3996 8.599774 ACAGCACAAAACAACATTATAAAACAC 58.400 29.630 0.00 0.00 0.00 3.32
3698 3999 9.593134 AGAACAGCACAAAACAACATTATAAAA 57.407 25.926 0.00 0.00 0.00 1.52
3936 4238 3.067106 TCGTGATCAAGGCTTCTTGTTC 58.933 45.455 8.84 7.78 45.92 3.18
4000 4302 1.474677 CCAGCCTATTGGTGCTCAGAG 60.475 57.143 0.00 0.00 41.21 3.35
4032 4340 3.030291 AGTGCAGACTAGCTAGCAGATT 58.970 45.455 20.91 0.00 37.72 2.40
4108 4460 2.098934 TGTGTTTACTGCAGTGCAAAGG 59.901 45.455 29.57 10.33 38.41 3.11
4183 4535 1.343142 TGTTTCCGCTCTCAGCTGTTA 59.657 47.619 14.67 1.91 39.60 2.41
4184 4536 0.106708 TGTTTCCGCTCTCAGCTGTT 59.893 50.000 14.67 0.00 39.60 3.16
4206 4558 0.508641 CGCAGCTAACACACTGACAC 59.491 55.000 0.00 0.00 35.90 3.67
4212 4564 2.730672 CGGCTCGCAGCTAACACAC 61.731 63.158 7.85 0.00 41.99 3.82
4227 4581 3.849953 GTCGACGGCATTGACGGC 61.850 66.667 17.60 13.22 39.67 5.68
4228 4582 1.561717 TTTGTCGACGGCATTGACGG 61.562 55.000 17.60 0.00 43.96 4.79
4249 4615 2.430921 CAGCGACACGTGGTCCTC 60.431 66.667 21.57 7.18 43.95 3.71
4255 4621 0.111878 CGTTGTAACAGCGACACGTG 60.112 55.000 15.48 15.48 40.32 4.49
4256 4622 1.210545 CCGTTGTAACAGCGACACGT 61.211 55.000 0.00 0.00 40.32 4.49
4257 4623 1.485514 CCGTTGTAACAGCGACACG 59.514 57.895 0.00 0.00 40.32 4.49
4271 4637 2.080693 TCGCATAAAACTCATGCCGTT 58.919 42.857 1.99 0.00 44.81 4.44
4274 4645 3.485947 TTGTCGCATAAAACTCATGCC 57.514 42.857 1.99 0.00 44.81 4.40
4307 4678 2.450160 CACCGTTTCAAGTGCAGAAAC 58.550 47.619 16.22 16.22 46.98 2.78
4308 4679 2.842208 CACCGTTTCAAGTGCAGAAA 57.158 45.000 0.00 0.00 32.93 2.52
4314 4685 0.248458 AAAGCGCACCGTTTCAAGTG 60.248 50.000 11.47 0.00 37.05 3.16
4315 4686 0.248458 CAAAGCGCACCGTTTCAAGT 60.248 50.000 11.47 0.00 28.83 3.16
4316 4687 0.248458 ACAAAGCGCACCGTTTCAAG 60.248 50.000 11.47 0.00 28.83 3.02
4317 4688 1.003331 CTACAAAGCGCACCGTTTCAA 60.003 47.619 11.47 0.00 28.83 2.69
4318 4689 0.584396 CTACAAAGCGCACCGTTTCA 59.416 50.000 11.47 0.00 28.83 2.69
4319 4690 0.724785 GCTACAAAGCGCACCGTTTC 60.725 55.000 11.47 0.00 39.39 2.78
4320 4691 1.281656 GCTACAAAGCGCACCGTTT 59.718 52.632 11.47 0.00 39.39 3.60
4321 4692 2.943653 GCTACAAAGCGCACCGTT 59.056 55.556 11.47 0.00 39.39 4.44
4338 4709 4.621068 TTCAAGTGCAGAAACAGAACTG 57.379 40.909 0.00 0.00 37.22 3.16
4436 4811 5.253096 AGTCCAAGACCAAGGGTGTATAATT 59.747 40.000 0.00 0.00 35.25 1.40
4452 4827 0.187361 CCAAACCCCCAAGTCCAAGA 59.813 55.000 0.00 0.00 0.00 3.02
4458 4833 2.612251 CCCACCAAACCCCCAAGT 59.388 61.111 0.00 0.00 0.00 3.16
4459 4834 2.922503 GCCCACCAAACCCCCAAG 60.923 66.667 0.00 0.00 0.00 3.61
4479 4854 3.718480 GAAGATTTGCGCCGCCGAC 62.718 63.158 6.63 0.00 36.29 4.79
4582 4959 5.281727 CCAAAAAGAAAGTACTCACAAGGC 58.718 41.667 0.00 0.00 0.00 4.35
4598 4981 3.005791 ACCCTTTTGATCTCGCCAAAAAG 59.994 43.478 0.00 6.69 41.28 2.27
4661 5054 4.439280 CTCCATAGGAGCCATGTGCGAA 62.439 54.545 0.00 0.00 43.29 4.70
4687 5090 5.386924 GAGTCCTAGATAAGCCAACTCCTA 58.613 45.833 0.00 0.00 0.00 2.94
4747 5150 3.454371 AGTACATGGCAACGATACTCC 57.546 47.619 0.00 0.00 42.51 3.85
4764 5167 5.868454 TGGTGCCGATACATAGTAGTAGTA 58.132 41.667 0.00 0.00 0.00 1.82
4765 5168 4.722220 TGGTGCCGATACATAGTAGTAGT 58.278 43.478 0.00 0.00 0.00 2.73
4766 5169 5.700722 TTGGTGCCGATACATAGTAGTAG 57.299 43.478 0.00 0.00 0.00 2.57
4848 5251 6.294361 ACCAGACACAGTTGTATGCTATTA 57.706 37.500 0.00 0.00 42.61 0.98
4850 5253 4.826274 ACCAGACACAGTTGTATGCTAT 57.174 40.909 0.00 0.00 42.61 2.97
4851 5254 4.314961 CAACCAGACACAGTTGTATGCTA 58.685 43.478 0.00 0.00 42.61 3.49
4867 7757 2.044946 GCTACCCCAGCCAACCAG 60.045 66.667 0.00 0.00 45.23 4.00
4906 8102 2.001812 TCAGAGCGAAAGAGCATCAC 57.998 50.000 0.00 0.00 40.15 3.06
5057 8259 7.071014 TGTGCTTGGAAATTTTGTTTTCTTC 57.929 32.000 0.00 0.00 36.17 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.